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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3421

Last change on this file since 3421 was 3421, checked in by gronemeier, 6 years ago
new surface-data output; renamed output variables (pt to theta, rho_air to rho, rho_ocean to rho_sea_water)
Property svn:keywords set to `Id`
File size: 31.6 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 3421 2018-10-24 18:39:32Z gronemeier $
27	! Renamed output variables
28	!
29	! 3419 2018-10-24 17:27:31Z gronemeier
30	! bugfix: nx, ny are required in non-parallel case
31	!
32	! 3337 2018-10-12 15:17:09Z kanani
33	! (from branch resler)
34	! Add Biometeorology
35	!
36	! 3294 2018-10-01 02:37:10Z raasch
37	! changes concerning modularization of ocean option
38	!
39	! 3274 2018-09-24 15:42:55Z knoop
40	! Modularization of all bulk cloud physics code components
41	!
42	! 3241 2018-09-12 15:02:00Z raasch
43	! unused variables and format statements removed
44	!
45	! 3049 2018-05-29 13:52:36Z Giersch
46	! Error messages revised
47	!
48	! 3045 2018-05-28 07:55:41Z Giersch
49	! Error message revised
50	!
51	! 3014 2018-05-09 08:42:38Z maronga
52	! Added nzb_do and nzt_do for some modules for 3d output
53	!
54	! 3004 2018-04-27 12:33:25Z Giersch
55	! Allocation checks implemented (averaged data will be assigned to fill values
56	! if no allocation happened so far)
57	!
58	! 2967 2018-04-13 11:22:08Z raasch
59	! bugfix: missing parallel cpp-directives added
60	!
61	! 2817 2018-02-19 16:32:21Z knoop
62	! Preliminary gust module interface implemented
63	!
64	! 2766 2018-01-22 17:17:47Z kanani
65	! Removed preprocessor directive __chem
66	!
67	! 2756 2018-01-16 18:11:14Z suehring
68	! Fill values for 3D output of chemical species introduced.
69	!
70	! 2746 2018-01-15 12:06:04Z suehring
71	! Move flag plant canopy to modules
72	!
73	! 2718 2018-01-02 08:49:38Z maronga
74	! Corrected "Former revisions" section
75	!
76	! 2696 2017-12-14 17:12:51Z kanani
77	! Change in file header (GPL part)
78	! Implementation of turbulence_closure_mod (TG)
79	! Implementation of chemistry module (FK)
80	! Set fill values at topography grid points or e.g. non-natural-type surface
81	! in case of LSM output (MS)
82	!
83	! 2512 2017-10-04 08:26:59Z raasch
84	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
85	! no output of ghost layer data
86	!
87	! 2292 2017-06-20 09:51:42Z schwenkel
88	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
89	! includes two more prognostic equations for cloud drop concentration (nc)
90	! and cloud water content (qc).
91	!
92	! 2233 2017-05-30 18:08:54Z suehring
93	!
94	! 2232 2017-05-30 17:47:52Z suehring
95	! Adjustments to new topography concept
96	!
97	! 2209 2017-04-19 09:34:46Z kanani
98	! Added plant canopy model output
99	!
100	! 2031 2016-10-21 15:11:58Z knoop
101	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
102	!
103	! 2011 2016-09-19 17:29:57Z kanani
104	! Flag urban_surface is now defined in module control_parameters,
105	! changed prefix for urban surface model output to "usm_",
106	! introduced control parameter varnamelength for LEN of trimvar.
107	!
108	! 2007 2016-08-24 15:47:17Z kanani
109	! Added support for new urban surface model (temporary modifications of
110	! SELECT CASE ( ) necessary, see variable trimvar)
111	!
112	! 2000 2016-08-20 18:09:15Z knoop
113	! Forced header and separation lines into 80 columns
114	!
115	! 1980 2016-07-29 15:51:57Z suehring
116	! Bugfix, in order to steer user-defined output, setting flag found explicitly
117	! to .F.
118	!
119	! 1976 2016-07-27 13:28:04Z maronga
120	! Output of radiation quantities is now done directly in the respective module
121	!
122	! 1972 2016-07-26 07:52:02Z maronga
123	! Output of land surface quantities is now done directly in the respective module.
124	! Unnecessary directive __parallel removed.
125	!
126	! 1960 2016-07-12 16:34:24Z suehring
127	! Scalar surface flux added
128	!
129	! 1849 2016-04-08 11:33:18Z hoffmann
130	! prr moved to arrays_3d
131	!
132	! 1822 2016-04-07 07:49:42Z hoffmann
133	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
134	!
135	! 1808 2016-04-05 19:44:00Z raasch
136	! test output removed
137	!
138	! 1783 2016-03-06 18:36:17Z raasch
139	! name change of netcdf routines and module + related changes
140	!
141	! 1745 2016-02-05 13:06:51Z gronemeier
142	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
143	!
144	! 1691 2015-10-26 16:17:44Z maronga
145	! Added output of radiative heating rates for RRTMG
146	!
147	! 1682 2015-10-07 23:56:08Z knoop
148	! Code annotations made doxygen readable
149	!
150	! 1585 2015-04-30 07:05:52Z maronga
151	! Added support for RRTMG
152	!
153	! 1551 2015-03-03 14:18:16Z maronga
154	! Added suppport for land surface model and radiation model output. In the course
155	! of this action, the limits for vertical loops have been changed (from nzb and
156	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
157	! Moreover, a new vertical grid zs was introduced.
158	!
159	! 1359 2014-04-11 17:15:14Z hoffmann
160	! New particle structure integrated.
161	!
162	! 1353 2014-04-08 15:21:23Z heinze
163	! REAL constants provided with KIND-attribute
164	!
165	! 1327 2014-03-21 11:00:16Z raasch
166	! parts concerning avs output removed,
167	! -netcdf output queries
168	!
169	! 1320 2014-03-20 08:40:49Z raasch
170	! ONLY-attribute added to USE-statements,
171	! kind-parameters added to all INTEGER and REAL declaration statements,
172	! kinds are defined in new module kinds,
173	! old module precision_kind is removed,
174	! revision history before 2012 removed,
175	! comment fields (!:) to be used for variable explanations added to
176	! all variable declaration statements
177	!
178	! 1318 2014-03-17 13:35:16Z raasch
179	! barrier argument removed from cpu_log,
180	! module interfaces removed
181	!
182	! 1308 2014-03-13 14:58:42Z fricke
183	! Check, if the limit of the time dimension is exceeded for parallel output
184	! To increase the performance for parallel output, the following is done:
185	! - Update of time axis is only done by PE0
186	!
187	! 1244 2013-10-31 08:16:56Z raasch
188	! Bugfix for index bounds in case of 3d-parallel output
189	!
190	! 1115 2013-03-26 18:16:16Z hoffmann
191	! ql is calculated by calc_liquid_water_content
192	!
193	! 1106 2013-03-04 05:31:38Z raasch
194	! array_kind renamed precision_kind
195	!
196	! 1076 2012-12-05 08:30:18Z hoffmann
197	! Bugfix in output of ql
198	!
199	! 1053 2012-11-13 17:11:03Z hoffmann
200	! +nr, qr, prr, qc and averaged quantities
201	!
202	! 1036 2012-10-22 13:43:42Z raasch
203	! code put under GPL (PALM 3.9)
204	!
205	! 1031 2012-10-19 14:35:30Z raasch
206	! netCDF4 without parallel file support implemented
207	!
208	! 1007 2012-09-19 14:30:36Z franke
209	! Bugfix: missing calculation of ql_vp added
210	!
211	! Revision 1.1 1997/09/03 06:29:36 raasch
212	! Initial revision
213	!
214	!
215	! Description:
216	! ------------
217	!> Output of the 3D-arrays in netCDF and/or AVS format.
218	!------------------------------------------------------------------------------!
219	SUBROUTINE data_output_3d( av )
220
221
222	USE arrays_3d, &
223	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
224	tend, u, v, vpt, w
225
226	USE averaging
227
228	USE basic_constants_and_equations_mod, &
229	ONLY: lv_d_cp
230
231	USE bulk_cloud_model_mod, &
232	ONLY: bulk_cloud_model, bcm_data_output_3d
233
234	USE chemistry_model_mod, &
235	ONLY: chem_data_output_3d
236
237	USE control_parameters, &
238	ONLY: air_chemistry, do3d, do3d_no, do3d_time_count, &
239	io_blocks, io_group, land_surface, message_string, &
240	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
241	psolver, simulated_time, time_since_reference_point, &
242	urban_surface, varnamelength
243
244	USE cpulog, &
245	ONLY: log_point, cpu_log
246
247	USE gust_mod, &
248	ONLY: gust_data_output_3d, gust_module_enabled
249
250	#if defined( __parallel )
251	USE indices, &
252	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
253	wall_flags_0
254	#else
255	USE indices, &
256	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
257	nzt, wall_flags_0
258	#endif
259
260	USE kinds
261
262	USE land_surface_model_mod, &
263	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
264
265	#if defined( __netcdf )
266	USE NETCDF
267	#endif
268
269	USE netcdf_interface, &
270	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
271	netcdf_data_format, netcdf_handle_error
272
273	USE ocean_mod, &
274	ONLY: ocean_data_output_3d
275
276	USE particle_attributes, &
277	ONLY: grid_particles, number_of_particles, particles, &
278	particle_advection_start, prt_count
279
280	USE pegrid
281
282	USE plant_canopy_model_mod, &
283	ONLY: pcm_data_output_3d
284
285	USE radiation_model_mod, &
286	ONLY: nzub, nzut, radiation, radiation_data_output_3d
287
288	USE biometeorology_mod, &
289	ONLY: biometeorology_data_output_3d
290
291	USE turbulence_closure_mod, &
292	ONLY: tcm_data_output_3d
293
294	USE urban_surface_mod, &
295	ONLY: usm_data_output_3d
296
297
298	IMPLICIT NONE
299
300	INTEGER(iwp) :: av !<
301	INTEGER(iwp) :: flag_nr !< number of masking flag
302	INTEGER(iwp) :: i !<
303	INTEGER(iwp) :: if !<
304	INTEGER(iwp) :: j !<
305	INTEGER(iwp) :: k !<
306	INTEGER(iwp) :: n !<
307	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
308	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
309
310	LOGICAL :: found !<
311	LOGICAL :: resorted !<
312
313	REAL(wp) :: mean_r !<
314	REAL(wp) :: s_r2 !<
315	REAL(wp) :: s_r3 !<
316
317	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
318
319	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
320
321	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
322
323	!
324	!-- Return, if nothing to output
325	IF ( do3d_no(av) == 0 ) RETURN
326
327	CALL cpu_log (log_point(14),'data_output_3d','start')
328
329	!
330	!-- Open output file.
331	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
332	!-- own file and writes the data of its subdomain in binary format. After the
333	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
334	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
335	IF ( netcdf_data_format < 5 ) THEN
336	#if defined( __parallel )
337	CALL check_open( 30 )
338	#endif
339	IF ( myid == 0 ) CALL check_open( 106+av*10 )
340	ELSE
341	CALL check_open( 106+av*10 )
342	ENDIF
343
344	!
345	!-- For parallel netcdf output the time axis must be limited. Return, if this
346	!-- limit is exceeded. This could be the case, if the simulated time exceeds
347	!-- the given end time by the length of the given output interval.
348	IF ( netcdf_data_format > 4 ) THEN
349	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
350	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
351	simulated_time, '&because the maximum ', &
352	'number of output time levels is ', &
353	'exceeded.'
354	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
355	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
356	RETURN
357	ENDIF
358	ENDIF
359
360	!
361	!-- Update the netCDF time axis
362	!-- In case of parallel output, this is only done by PE0 to increase the
363	!-- performance.
364	#if defined( __netcdf )
365	do3d_time_count(av) = do3d_time_count(av) + 1
366	IF ( myid == 0 ) THEN
367	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
368	(/ time_since_reference_point /), &
369	start = (/ do3d_time_count(av) /), &
370	count = (/ 1 /) )
371	CALL netcdf_handle_error( 'data_output_3d', 376 )
372	ENDIF
373	#endif
374
375	!
376	!-- Loop over all variables to be written.
377	if = 1
378
379	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
380
381	!
382	!-- Temporary solution to account for data output within the new urban
383	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
384	!-- Store the array chosen on the temporary array.
385	trimvar = TRIM( do3d(av,if) )
386	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
387	trimvar = 'usm_output'
388	resorted = .TRUE.
389	nzb_do = nzub
390	nzt_do = nzut
391	ELSE
392	resorted = .FALSE.
393	nzb_do = nzb
394	nzt_do = nz_do3d
395	ENDIF
396	!
397	!-- Set flag to steer output of radiation, land-surface, or user-defined
398	!-- quantities
399	found = .FALSE.
400	!
401	!-- Allocate a temporary array with the desired output dimensions.
402	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
403	!
404	!-- Before each output, set array local_pf to fill value
405	local_pf = fill_value
406	!
407	!-- Set masking flag for topography for not resorted arrays
408	flag_nr = 0
409
410	SELECT CASE ( trimvar )
411
412	CASE ( 'e' )
413	IF ( av == 0 ) THEN
414	to_be_resorted => e
415	ELSE
416	IF ( .NOT. ALLOCATED( e_av ) ) THEN
417	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
418	e_av = REAL( fill_value, KIND = wp )
419	ENDIF
420	to_be_resorted => e_av
421	ENDIF
422
423	CASE ( 'thetal' )
424	IF ( av == 0 ) THEN
425	to_be_resorted => pt
426	ELSE
427	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
428	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
429	lpt_av = REAL( fill_value, KIND = wp )
430	ENDIF
431	to_be_resorted => lpt_av
432	ENDIF
433
434	CASE ( 'p' )
435	IF ( av == 0 ) THEN
436	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
437	to_be_resorted => p
438	ELSE
439	IF ( .NOT. ALLOCATED( p_av ) ) THEN
440	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
441	p_av = REAL( fill_value, KIND = wp )
442	ENDIF
443	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
444	to_be_resorted => p_av
445	ENDIF
446
447	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
448	IF ( av == 0 ) THEN
449	IF ( simulated_time >= particle_advection_start ) THEN
450	tend = prt_count
451	ELSE
452	tend = 0.0_wp
453	ENDIF
454	DO i = nxl, nxr
455	DO j = nys, nyn
456	DO k = nzb_do, nzt_do
457	local_pf(i,j,k) = tend(k,j,i)
458	ENDDO
459	ENDDO
460	ENDDO
461	resorted = .TRUE.
462	ELSE
463	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
464	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
465	pc_av = REAL( fill_value, KIND = wp )
466	ENDIF
467	to_be_resorted => pc_av
468	ENDIF
469
470	CASE ( 'pr' ) ! mean particle radius (effective radius)
471	IF ( av == 0 ) THEN
472	IF ( simulated_time >= particle_advection_start ) THEN
473	DO i = nxl, nxr
474	DO j = nys, nyn
475	DO k = nzb_do, nzt_do
476	number_of_particles = prt_count(k,j,i)
477	IF (number_of_particles <= 0) CYCLE
478	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
479	s_r2 = 0.0_wp
480	s_r3 = 0.0_wp
481	DO n = 1, number_of_particles
482	IF ( particles(n)%particle_mask ) THEN
483	s_r2 = s_r2 + particles(n)%radius*2 &
484	particles(n)%weight_factor
485	s_r3 = s_r3 + particles(n)%radius*3 &
486	particles(n)%weight_factor
487	ENDIF
488	ENDDO
489	IF ( s_r2 > 0.0_wp ) THEN
490	mean_r = s_r3 / s_r2
491	ELSE
492	mean_r = 0.0_wp
493	ENDIF
494	tend(k,j,i) = mean_r
495	ENDDO
496	ENDDO
497	ENDDO
498	ELSE
499	tend = 0.0_wp
500	ENDIF
501	DO i = nxl, nxr
502	DO j = nys, nyn
503	DO k = nzb_do, nzt_do
504	local_pf(i,j,k) = tend(k,j,i)
505	ENDDO
506	ENDDO
507	ENDDO
508	resorted = .TRUE.
509	ELSE
510	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
511	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
512	pr_av = REAL( fill_value, KIND = wp )
513	ENDIF
514	to_be_resorted => pr_av
515	ENDIF
516
517	CASE ( 'theta' )
518	IF ( av == 0 ) THEN
519	IF ( .NOT. bulk_cloud_model ) THEN
520	to_be_resorted => pt
521	ELSE
522	DO i = nxl, nxr
523	DO j = nys, nyn
524	DO k = nzb_do, nzt_do
525	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
526	d_exner(k) * &
527	ql(k,j,i)
528	ENDDO
529	ENDDO
530	ENDDO
531	resorted = .TRUE.
532	ENDIF
533	ELSE
534	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
535	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
536	pt_av = REAL( fill_value, KIND = wp )
537	ENDIF
538	to_be_resorted => pt_av
539	ENDIF
540
541	CASE ( 'q' )
542	IF ( av == 0 ) THEN
543	to_be_resorted => q
544	ELSE
545	IF ( .NOT. ALLOCATED( q_av ) ) THEN
546	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
547	q_av = REAL( fill_value, KIND = wp )
548	ENDIF
549	to_be_resorted => q_av
550	ENDIF
551
552	CASE ( 'ql' )
553	IF ( av == 0 ) THEN
554	to_be_resorted => ql
555	ELSE
556	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
557	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
558	ql_av = REAL( fill_value, KIND = wp )
559	ENDIF
560	to_be_resorted => ql_av
561	ENDIF
562
563	CASE ( 'ql_c' )
564	IF ( av == 0 ) THEN
565	to_be_resorted => ql_c
566	ELSE
567	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
568	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
569	ql_c_av = REAL( fill_value, KIND = wp )
570	ENDIF
571	to_be_resorted => ql_c_av
572	ENDIF
573
574	CASE ( 'ql_v' )
575	IF ( av == 0 ) THEN
576	to_be_resorted => ql_v
577	ELSE
578	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
579	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
580	ql_v_av = REAL( fill_value, KIND = wp )
581	ENDIF
582	to_be_resorted => ql_v_av
583	ENDIF
584
585	CASE ( 'ql_vp' )
586	IF ( av == 0 ) THEN
587	IF ( simulated_time >= particle_advection_start ) THEN
588	DO i = nxl, nxr
589	DO j = nys, nyn
590	DO k = nzb_do, nzt_do
591	number_of_particles = prt_count(k,j,i)
592	IF (number_of_particles <= 0) CYCLE
593	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
594	DO n = 1, number_of_particles
595	IF ( particles(n)%particle_mask ) THEN
596	tend(k,j,i) = tend(k,j,i) + &
597	particles(n)%weight_factor / &
598	prt_count(k,j,i)
599	ENDIF
600	ENDDO
601	ENDDO
602	ENDDO
603	ENDDO
604	ELSE
605	tend = 0.0_wp
606	ENDIF
607	DO i = nxl, nxr
608	DO j = nys, nyn
609	DO k = nzb_do, nzt_do
610	local_pf(i,j,k) = tend(k,j,i)
611	ENDDO
612	ENDDO
613	ENDDO
614	resorted = .TRUE.
615	ELSE
616	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
617	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
618	ql_vp_av = REAL( fill_value, KIND = wp )
619	ENDIF
620	to_be_resorted => ql_vp_av
621	ENDIF
622
623	CASE ( 'qv' )
624	IF ( av == 0 ) THEN
625	DO i = nxl, nxr
626	DO j = nys, nyn
627	DO k = nzb_do, nzt_do
628	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
629	ENDDO
630	ENDDO
631	ENDDO
632	resorted = .TRUE.
633	ELSE
634	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
635	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
636	qv_av = REAL( fill_value, KIND = wp )
637	ENDIF
638	to_be_resorted => qv_av
639	ENDIF
640
641	CASE ( 's' )
642	IF ( av == 0 ) THEN
643	to_be_resorted => s
644	ELSE
645	IF ( .NOT. ALLOCATED( s_av ) ) THEN
646	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
647	s_av = REAL( fill_value, KIND = wp )
648	ENDIF
649	to_be_resorted => s_av
650	ENDIF
651
652	CASE ( 'u' )
653	flag_nr = 1
654	IF ( av == 0 ) THEN
655	to_be_resorted => u
656	ELSE
657	IF ( .NOT. ALLOCATED( u_av ) ) THEN
658	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
659	u_av = REAL( fill_value, KIND = wp )
660	ENDIF
661	to_be_resorted => u_av
662	ENDIF
663
664	CASE ( 'v' )
665	flag_nr = 2
666	IF ( av == 0 ) THEN
667	to_be_resorted => v
668	ELSE
669	IF ( .NOT. ALLOCATED( v_av ) ) THEN
670	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
671	v_av = REAL( fill_value, KIND = wp )
672	ENDIF
673	to_be_resorted => v_av
674	ENDIF
675
676	CASE ( 'thetav' )
677	IF ( av == 0 ) THEN
678	to_be_resorted => vpt
679	ELSE
680	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
681	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
682	vpt_av = REAL( fill_value, KIND = wp )
683	ENDIF
684	to_be_resorted => vpt_av
685	ENDIF
686
687	CASE ( 'w' )
688	flag_nr = 3
689	IF ( av == 0 ) THEN
690	to_be_resorted => w
691	ELSE
692	IF ( .NOT. ALLOCATED( w_av ) ) THEN
693	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
694	w_av = REAL( fill_value, KIND = wp )
695	ENDIF
696	to_be_resorted => w_av
697	ENDIF
698	!
699	!-- Block of urban surface model outputs
700	CASE ( 'usm_output' )
701	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
702	nzb_do, nzt_do )
703
704	CASE DEFAULT
705
706	!
707	!-- Quantities of other modules
708	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
709	CALL bcm_data_output_3d( av, do3d(av,if), found, local_pf, &
710	nzb_do, nzt_do )
711	resorted = .TRUE.
712	ENDIF
713
714	IF ( .NOT. found .AND. air_chemistry ) THEN
715	CALL chem_data_output_3d( av, do3d(av,if), found, &
716	local_pf, fill_value, nzb_do, nzt_do )
717	resorted = .TRUE.
718	ENDIF
719
720	IF ( .NOT. found .AND. gust_module_enabled ) THEN
721	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
722	nzb_do, nzt_do )
723	resorted = .TRUE.
724	ENDIF
725
726	IF ( .NOT. found .AND. land_surface ) THEN
727	!
728	!-- For soil model quantities, it is required to re-allocate local_pf
729	nzb_do = nzb_soil
730	nzt_do = nzt_soil
731
732	DEALLOCATE ( local_pf )
733	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
734	local_pf = fill_value
735
736	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
737	resorted = .TRUE.
738
739	!
740	!-- If no soil model variable was found, re-allocate local_pf
741	IF ( .NOT. found ) THEN
742	nzb_do = nzb
743	nzt_do = nz_do3d
744
745	DEALLOCATE ( local_pf )
746	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
747	ENDIF
748
749	ENDIF
750
751	IF ( .NOT. found .AND. ocean_mode ) THEN
752	CALL ocean_data_output_3d( av, do3d(av,if), found, local_pf, &
753	nzb_do, nzt_do )
754	resorted = .TRUE.
755	ENDIF
756
757	IF ( .NOT. found .AND. plant_canopy ) THEN
758	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
759	fill_value, nzb_do, nzt_do )
760	resorted = .TRUE.
761	ENDIF
762
763	IF ( .NOT. found .AND. radiation ) THEN
764	CALL radiation_data_output_3d( av, do3d(av,if), found, &
765	local_pf, nzb_do, nzt_do )
766	resorted = .TRUE.
767	ENDIF
768
769	!
770	!-- Biometeorology quantity
771	IF ( .NOT. found .AND. radiation ) THEN
772	CALL biometeorology_data_output_3d( av, do3d(av,if), found, &
773	local_pf, nzb_do, nzt_do )
774	resorted = .TRUE.
775	ENDIF
776
777	IF ( .NOT. found ) THEN
778	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
779	nzb_do, nzt_do )
780	resorted = .TRUE.
781	ENDIF
782
783	!
784	!-- User defined quantities
785	IF ( .NOT. found ) THEN
786	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
787	nzb_do, nzt_do )
788	resorted = .TRUE.
789	ENDIF
790
791	IF ( .NOT. found ) THEN
792	message_string = 'no output available for: ' // &
793	TRIM( do3d(av,if) )
794	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
795	ENDIF
796
797	END SELECT
798
799	!
800	!-- Resort the array to be output, if not done above
801	IF ( .NOT. resorted ) THEN
802	DO i = nxl, nxr
803	DO j = nys, nyn
804	DO k = nzb_do, nzt_do
805	local_pf(i,j,k) = MERGE( &
806	to_be_resorted(k,j,i), &
807	REAL( fill_value, KIND = wp ), &
808	BTEST( wall_flags_0(k,j,i), flag_nr ) )
809	ENDDO
810	ENDDO
811	ENDDO
812	ENDIF
813
814	!
815	!-- Output of the 3D-array
816	#if defined( __parallel )
817	IF ( netcdf_data_format < 5 ) THEN
818	!
819	!-- Non-parallel netCDF output. Data is output in parallel in
820	!-- FORTRAN binary format here, and later collected into one file by
821	!-- combine_plot_fields
822	IF ( myid == 0 ) THEN
823	WRITE ( 30 ) time_since_reference_point, &
824	do3d_time_count(av), av
825	ENDIF
826	DO i = 0, io_blocks-1
827	IF ( i == io_group ) THEN
828	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
829	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
830	ENDIF
831
832	CALL MPI_BARRIER( comm2d, ierr )
833
834	ENDDO
835
836	ELSE
837	#if defined( __netcdf )
838	!
839	!-- Parallel output in netCDF4/HDF5 format.
840	! IF ( nxr == nx .AND. nyn /= ny ) THEN
841	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
842	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
843	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
844	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
845	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
846	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
847	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
848	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
849	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
850	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
851	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
852	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
853	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
854	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
855	! ELSE
856	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
857	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
858	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
859	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
860	! ENDIF
861	CALL netcdf_handle_error( 'data_output_3d', 386 )
862	#endif
863	ENDIF
864	#else
865	#if defined( __netcdf )
866	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
867	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
868	start = (/ 1, 1, 1, do3d_time_count(av) /), &
869	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
870	CALL netcdf_handle_error( 'data_output_3d', 446 )
871	#endif
872	#endif
873
874	if = if + 1
875
876	!
877	!-- Deallocate temporary array
878	DEALLOCATE ( local_pf )
879
880	ENDDO
881
882	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
883
884	END SUBROUTINE data_output_3d

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