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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2798

Last change on this file since 2798 was 2766, checked in by kanani, 6 years ago
Removal of chem directive, plus minor changes
Property svn:keywords set to `Id`
File size: 27.2 KB

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1	!> @file data_output_3d.f90
2	!------------------------------------------------------------------------------!
3	! This file is part of the PALM model system.
4	!
5	! PALM is free software: you can redistribute it and/or modify it under the
6	! terms of the GNU General Public License as published by the Free Software
7	! Foundation, either version 3 of the License, or (at your option) any later
8	! version.
9	!
10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	!
14	! You should have received a copy of the GNU General Public License along with
15	! PALM. If not, see <http://www.gnu.org/licenses/>.
16	!
17	! Copyright 1997-2018 Leibniz Universitaet Hannover
18	!------------------------------------------------------------------------------!
19	!
20	! Current revisions:
21	! ------------------
22	!
23	!
24	! Former revisions:
25	! -----------------
26	! $Id: data_output_3d.f90 2766 2018-01-22 17:17:47Z suehring $
27	! Removed preprocessor directive __chem
28	!
29	! 2756 2018-01-16 18:11:14Z suehring
30	! Fill values for 3D output of chemical species introduced.
31	!
32	! 2746 2018-01-15 12:06:04Z suehring
33	! Move flag plant canopy to modules
34	!
35	! 2718 2018-01-02 08:49:38Z maronga
36	! Corrected "Former revisions" section
37	!
38	! 2696 2017-12-14 17:12:51Z kanani
39	! Change in file header (GPL part)
40	! Implementation of turbulence_closure_mod (TG)
41	! Implementation of chemistry module (FK)
42	! Set fill values at topography grid points or e.g. non-natural-type surface
43	! in case of LSM output (MS)
44	!
45	! 2512 2017-10-04 08:26:59Z raasch
46	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
47	! no output of ghost layer data
48	!
49	! 2292 2017-06-20 09:51:42Z schwenkel
50	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
51	! includes two more prognostic equations for cloud drop concentration (nc)
52	! and cloud water content (qc).
53	!
54	! 2233 2017-05-30 18:08:54Z suehring
55	!
56	! 2232 2017-05-30 17:47:52Z suehring
57	! Adjustments to new topography concept
58	!
59	! 2209 2017-04-19 09:34:46Z kanani
60	! Added plant canopy model output
61	!
62	! 2031 2016-10-21 15:11:58Z knoop
63	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
64	!
65	! 2011 2016-09-19 17:29:57Z kanani
66	! Flag urban_surface is now defined in module control_parameters,
67	! changed prefix for urban surface model output to "usm_",
68	! introduced control parameter varnamelength for LEN of trimvar.
69	!
70	! 2007 2016-08-24 15:47:17Z kanani
71	! Added support for new urban surface model (temporary modifications of
72	! SELECT CASE ( ) necessary, see variable trimvar)
73	!
74	! 2000 2016-08-20 18:09:15Z knoop
75	! Forced header and separation lines into 80 columns
76	!
77	! 1980 2016-07-29 15:51:57Z suehring
78	! Bugfix, in order to steer user-defined output, setting flag found explicitly
79	! to .F.
80	!
81	! 1976 2016-07-27 13:28:04Z maronga
82	! Output of radiation quantities is now done directly in the respective module
83	!
84	! 1972 2016-07-26 07:52:02Z maronga
85	! Output of land surface quantities is now done directly in the respective module.
86	! Unnecessary directive __parallel removed.
87	!
88	! 1960 2016-07-12 16:34:24Z suehring
89	! Scalar surface flux added
90	!
91	! 1849 2016-04-08 11:33:18Z hoffmann
92	! prr moved to arrays_3d
93	!
94	! 1822 2016-04-07 07:49:42Z hoffmann
95	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
96	!
97	! 1808 2016-04-05 19:44:00Z raasch
98	! test output removed
99	!
100	! 1783 2016-03-06 18:36:17Z raasch
101	! name change of netcdf routines and module + related changes
102	!
103	! 1745 2016-02-05 13:06:51Z gronemeier
104	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
105	!
106	! 1691 2015-10-26 16:17:44Z maronga
107	! Added output of radiative heating rates for RRTMG
108	!
109	! 1682 2015-10-07 23:56:08Z knoop
110	! Code annotations made doxygen readable
111	!
112	! 1585 2015-04-30 07:05:52Z maronga
113	! Added support for RRTMG
114	!
115	! 1551 2015-03-03 14:18:16Z maronga
116	! Added suppport for land surface model and radiation model output. In the course
117	! of this action, the limits for vertical loops have been changed (from nzb and
118	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
119	! Moreover, a new vertical grid zs was introduced.
120	!
121	! 1359 2014-04-11 17:15:14Z hoffmann
122	! New particle structure integrated.
123	!
124	! 1353 2014-04-08 15:21:23Z heinze
125	! REAL constants provided with KIND-attribute
126	!
127	! 1327 2014-03-21 11:00:16Z raasch
128	! parts concerning avs output removed,
129	! -netcdf output queries
130	!
131	! 1320 2014-03-20 08:40:49Z raasch
132	! ONLY-attribute added to USE-statements,
133	! kind-parameters added to all INTEGER and REAL declaration statements,
134	! kinds are defined in new module kinds,
135	! old module precision_kind is removed,
136	! revision history before 2012 removed,
137	! comment fields (!:) to be used for variable explanations added to
138	! all variable declaration statements
139	!
140	! 1318 2014-03-17 13:35:16Z raasch
141	! barrier argument removed from cpu_log,
142	! module interfaces removed
143	!
144	! 1308 2014-03-13 14:58:42Z fricke
145	! Check, if the limit of the time dimension is exceeded for parallel output
146	! To increase the performance for parallel output, the following is done:
147	! - Update of time axis is only done by PE0
148	!
149	! 1244 2013-10-31 08:16:56Z raasch
150	! Bugfix for index bounds in case of 3d-parallel output
151	!
152	! 1115 2013-03-26 18:16:16Z hoffmann
153	! ql is calculated by calc_liquid_water_content
154	!
155	! 1106 2013-03-04 05:31:38Z raasch
156	! array_kind renamed precision_kind
157	!
158	! 1076 2012-12-05 08:30:18Z hoffmann
159	! Bugfix in output of ql
160	!
161	! 1053 2012-11-13 17:11:03Z hoffmann
162	! +nr, qr, prr, qc and averaged quantities
163	!
164	! 1036 2012-10-22 13:43:42Z raasch
165	! code put under GPL (PALM 3.9)
166	!
167	! 1031 2012-10-19 14:35:30Z raasch
168	! netCDF4 without parallel file support implemented
169	!
170	! 1007 2012-09-19 14:30:36Z franke
171	! Bugfix: missing calculation of ql_vp added
172	!
173	! Revision 1.1 1997/09/03 06:29:36 raasch
174	! Initial revision
175	!
176	!
177	! Description:
178	! ------------
179	!> Output of the 3D-arrays in netCDF and/or AVS format.
180	!------------------------------------------------------------------------------!
181	SUBROUTINE data_output_3d( av )
182
183
184	USE arrays_3d, &
185	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
186	sa, tend, u, v, vpt, w
187
188	USE averaging
189
190	USE chemistry_model_mod, &
191	ONLY: chem_data_output_3d
192
193	USE cloud_parameters, &
194	ONLY: l_d_cp, pt_d_t
195
196	USE control_parameters, &
197	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
198	io_blocks, io_group, land_surface, message_string, &
199	ntdim_3d, nz_do3d, plant_canopy, &
200	psolver, simulated_time, time_since_reference_point, &
201	urban_surface, varnamelength
202
203	USE cpulog, &
204	ONLY: log_point, cpu_log
205
206	USE indices, &
207	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
208
209	USE kinds
210
211	USE land_surface_model_mod, &
212	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
213
214	#if defined( __netcdf )
215	USE NETCDF
216	#endif
217
218	USE netcdf_interface, &
219	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
220	netcdf_data_format, netcdf_handle_error
221
222	USE particle_attributes, &
223	ONLY: grid_particles, number_of_particles, particles, &
224	particle_advection_start, prt_count
225
226	USE pegrid
227
228	USE plant_canopy_model_mod, &
229	ONLY: pcm_data_output_3d
230
231	USE radiation_model_mod, &
232	ONLY: nzub, nzut, radiation, radiation_data_output_3d
233
234	USE turbulence_closure_mod, &
235	ONLY: tcm_data_output_3d
236
237	USE urban_surface_mod, &
238	ONLY: usm_data_output_3d
239
240
241	IMPLICIT NONE
242
243	INTEGER(iwp) :: av !<
244	INTEGER(iwp) :: flag_nr !< number of masking flag
245	INTEGER(iwp) :: i !<
246	INTEGER(iwp) :: if !<
247	INTEGER(iwp) :: j !<
248	INTEGER(iwp) :: k !<
249	INTEGER(iwp) :: n !<
250	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
251	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
252
253	LOGICAL :: found !<
254	LOGICAL :: resorted !<
255
256	REAL(wp) :: mean_r !<
257	REAL(wp) :: s_r2 !<
258	REAL(wp) :: s_r3 !<
259
260	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
261
262	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
263
264	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
265
266	!
267	!-- Return, if nothing to output
268	IF ( do3d_no(av) == 0 ) RETURN
269
270	CALL cpu_log (log_point(14),'data_output_3d','start')
271
272	!
273	!-- Open output file.
274	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
275	!-- own file and writes the data of its subdomain in binary format. After the
276	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
277	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
278	IF ( netcdf_data_format < 5 ) THEN
279	CALL check_open( 30 )
280	IF ( myid == 0 ) CALL check_open( 106+av*10 )
281	ELSE
282	CALL check_open( 106+av*10 )
283	ENDIF
284
285	!
286	!-- For parallel netcdf output the time axis must be limited. Return, if this
287	!-- limit is exceeded. This could be the case, if the simulated time exceeds
288	!-- the given end time by the length of the given output interval.
289	IF ( netcdf_data_format > 4 ) THEN
290	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
291	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
292	simulated_time, '&because the maximum ', &
293	'number of output time levels is ', &
294	'exceeded.'
295	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
296	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
297	RETURN
298	ENDIF
299	ENDIF
300
301	!
302	!-- Update the netCDF time axis
303	!-- In case of parallel output, this is only done by PE0 to increase the
304	!-- performance.
305	#if defined( __netcdf )
306	do3d_time_count(av) = do3d_time_count(av) + 1
307	IF ( myid == 0 ) THEN
308	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
309	(/ time_since_reference_point /), &
310	start = (/ do3d_time_count(av) /), &
311	count = (/ 1 /) )
312	CALL netcdf_handle_error( 'data_output_3d', 376 )
313	ENDIF
314	#endif
315
316	!
317	!-- Loop over all variables to be written.
318	if = 1
319
320	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
321
322	!
323	!-- Temporary solution to account for data output within the new urban
324	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
325	!-- Store the array chosen on the temporary array.
326	trimvar = TRIM( do3d(av,if) )
327	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
328	trimvar = 'usm_output'
329	resorted = .TRUE.
330	nzb_do = nzub
331	nzt_do = nzut
332	ELSE
333	resorted = .FALSE.
334	nzb_do = nzb
335	nzt_do = nz_do3d
336	ENDIF
337	!
338	!-- Set flag to steer output of radiation, land-surface, or user-defined
339	!-- quantities
340	found = .FALSE.
341	!
342	!-- Allocate a temporary array with the desired output dimensions.
343	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
344	!
345	!-- Before each output, set array local_pf to fill value
346	local_pf = fill_value
347	!
348	!-- Set masking flag for topography for not resorted arrays
349	flag_nr = 0
350
351	SELECT CASE ( trimvar )
352
353	CASE ( 'e' )
354	IF ( av == 0 ) THEN
355	to_be_resorted => e
356	ELSE
357	to_be_resorted => e_av
358	ENDIF
359
360	CASE ( 'lpt' )
361	IF ( av == 0 ) THEN
362	to_be_resorted => pt
363	ELSE
364	to_be_resorted => lpt_av
365	ENDIF
366
367	CASE ( 'nc' )
368	IF ( av == 0 ) THEN
369	to_be_resorted => nc
370	ELSE
371	to_be_resorted => nc_av
372	ENDIF
373
374	CASE ( 'nr' )
375	IF ( av == 0 ) THEN
376	to_be_resorted => nr
377	ELSE
378	to_be_resorted => nr_av
379	ENDIF
380
381	CASE ( 'p' )
382	IF ( av == 0 ) THEN
383	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
384	to_be_resorted => p
385	ELSE
386	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
387	to_be_resorted => p_av
388	ENDIF
389
390	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
391	IF ( av == 0 ) THEN
392	IF ( simulated_time >= particle_advection_start ) THEN
393	tend = prt_count
394	ELSE
395	tend = 0.0_wp
396	ENDIF
397	DO i = nxl, nxr
398	DO j = nys, nyn
399	DO k = nzb_do, nzt_do
400	local_pf(i,j,k) = tend(k,j,i)
401	ENDDO
402	ENDDO
403	ENDDO
404	resorted = .TRUE.
405	ELSE
406	to_be_resorted => pc_av
407	ENDIF
408
409	CASE ( 'pr' ) ! mean particle radius (effective radius)
410	IF ( av == 0 ) THEN
411	IF ( simulated_time >= particle_advection_start ) THEN
412	DO i = nxl, nxr
413	DO j = nys, nyn
414	DO k = nzb_do, nzt_do
415	number_of_particles = prt_count(k,j,i)
416	IF (number_of_particles <= 0) CYCLE
417	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
418	s_r2 = 0.0_wp
419	s_r3 = 0.0_wp
420	DO n = 1, number_of_particles
421	IF ( particles(n)%particle_mask ) THEN
422	s_r2 = s_r2 + particles(n)%radius*2 &
423	particles(n)%weight_factor
424	s_r3 = s_r3 + particles(n)%radius*3 &
425	particles(n)%weight_factor
426	ENDIF
427	ENDDO
428	IF ( s_r2 > 0.0_wp ) THEN
429	mean_r = s_r3 / s_r2
430	ELSE
431	mean_r = 0.0_wp
432	ENDIF
433	tend(k,j,i) = mean_r
434	ENDDO
435	ENDDO
436	ENDDO
437	ELSE
438	tend = 0.0_wp
439	ENDIF
440	DO i = nxl, nxr
441	DO j = nys, nyn
442	DO k = nzb_do, nzt_do
443	local_pf(i,j,k) = tend(k,j,i)
444	ENDDO
445	ENDDO
446	ENDDO
447	resorted = .TRUE.
448	ELSE
449	to_be_resorted => pr_av
450	ENDIF
451
452	CASE ( 'prr' )
453	IF ( av == 0 ) THEN
454	DO i = nxl, nxr
455	DO j = nys, nyn
456	DO k = nzb_do, nzt_do
457	local_pf(i,j,k) = prr(k,j,i)
458	ENDDO
459	ENDDO
460	ENDDO
461	ELSE
462	DO i = nxl, nxr
463	DO j = nys, nyn
464	DO k = nzb_do, nzt_do
465	local_pf(i,j,k) = prr_av(k,j,i)
466	ENDDO
467	ENDDO
468	ENDDO
469	ENDIF
470	resorted = .TRUE.
471
472	CASE ( 'pt' )
473	IF ( av == 0 ) THEN
474	IF ( .NOT. cloud_physics ) THEN
475	to_be_resorted => pt
476	ELSE
477	DO i = nxl, nxr
478	DO j = nys, nyn
479	DO k = nzb_do, nzt_do
480	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
481	pt_d_t(k) * &
482	ql(k,j,i)
483	ENDDO
484	ENDDO
485	ENDDO
486	resorted = .TRUE.
487	ENDIF
488	ELSE
489	to_be_resorted => pt_av
490	ENDIF
491
492	CASE ( 'q' )
493	IF ( av == 0 ) THEN
494	to_be_resorted => q
495	ELSE
496	to_be_resorted => q_av
497	ENDIF
498
499	CASE ( 'qc' )
500	IF ( av == 0 ) THEN
501	to_be_resorted => qc
502	ELSE
503	to_be_resorted => qc_av
504	ENDIF
505
506	CASE ( 'ql' )
507	IF ( av == 0 ) THEN
508	to_be_resorted => ql
509	ELSE
510	to_be_resorted => ql_av
511	ENDIF
512
513	CASE ( 'ql_c' )
514	IF ( av == 0 ) THEN
515	to_be_resorted => ql_c
516	ELSE
517	to_be_resorted => ql_c_av
518	ENDIF
519
520	CASE ( 'ql_v' )
521	IF ( av == 0 ) THEN
522	to_be_resorted => ql_v
523	ELSE
524	to_be_resorted => ql_v_av
525	ENDIF
526
527	CASE ( 'ql_vp' )
528	IF ( av == 0 ) THEN
529	IF ( simulated_time >= particle_advection_start ) THEN
530	DO i = nxl, nxr
531	DO j = nys, nyn
532	DO k = nzb_do, nzt_do
533	number_of_particles = prt_count(k,j,i)
534	IF (number_of_particles <= 0) CYCLE
535	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
536	DO n = 1, number_of_particles
537	IF ( particles(n)%particle_mask ) THEN
538	tend(k,j,i) = tend(k,j,i) + &
539	particles(n)%weight_factor / &
540	prt_count(k,j,i)
541	ENDIF
542	ENDDO
543	ENDDO
544	ENDDO
545	ENDDO
546	ELSE
547	tend = 0.0_wp
548	ENDIF
549	DO i = nxl, nxr
550	DO j = nys, nyn
551	DO k = nzb_do, nzt_do
552	local_pf(i,j,k) = tend(k,j,i)
553	ENDDO
554	ENDDO
555	ENDDO
556	resorted = .TRUE.
557	ELSE
558	to_be_resorted => ql_vp_av
559	ENDIF
560
561	CASE ( 'qr' )
562	IF ( av == 0 ) THEN
563	to_be_resorted => qr
564	ELSE
565	to_be_resorted => qr_av
566	ENDIF
567
568	CASE ( 'qv' )
569	IF ( av == 0 ) THEN
570	DO i = nxl, nxr
571	DO j = nys, nyn
572	DO k = nzb_do, nzt_do
573	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
574	ENDDO
575	ENDDO
576	ENDDO
577	resorted = .TRUE.
578	ELSE
579	to_be_resorted => qv_av
580	ENDIF
581
582	CASE ( 'rho_ocean' )
583	IF ( av == 0 ) THEN
584	to_be_resorted => rho_ocean
585	ELSE
586	to_be_resorted => rho_ocean_av
587	ENDIF
588
589	CASE ( 's' )
590	IF ( av == 0 ) THEN
591	to_be_resorted => s
592	ELSE
593	to_be_resorted => s_av
594	ENDIF
595
596	CASE ( 'sa' )
597	IF ( av == 0 ) THEN
598	to_be_resorted => sa
599	ELSE
600	to_be_resorted => sa_av
601	ENDIF
602
603	CASE ( 'u' )
604	flag_nr = 1
605	IF ( av == 0 ) THEN
606	to_be_resorted => u
607	ELSE
608	to_be_resorted => u_av
609	ENDIF
610
611	CASE ( 'v' )
612	flag_nr = 2
613	IF ( av == 0 ) THEN
614	to_be_resorted => v
615	ELSE
616	to_be_resorted => v_av
617	ENDIF
618
619	CASE ( 'vpt' )
620	IF ( av == 0 ) THEN
621	to_be_resorted => vpt
622	ELSE
623	to_be_resorted => vpt_av
624	ENDIF
625
626	CASE ( 'w' )
627	flag_nr = 3
628	IF ( av == 0 ) THEN
629	to_be_resorted => w
630	ELSE
631	to_be_resorted => w_av
632	ENDIF
633	!
634	!-- Block of urban surface model outputs
635	CASE ( 'usm_output' )
636	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
637	nzb_do, nzt_do )
638
639	CASE DEFAULT
640
641	!
642	!-- Land surface quantity
643	IF ( land_surface ) THEN
644	!
645	!-- For soil model quantities, it is required to re-allocate local_pf
646	nzb_do = nzb_soil
647	nzt_do = nzt_soil
648
649	DEALLOCATE ( local_pf )
650	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
651	local_pf = fill_value
652
653	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
654	resorted = .TRUE.
655
656	!
657	!-- If no soil model variable was found, re-allocate local_pf
658	IF ( .NOT. found ) THEN
659	nzb_do = nzb
660	nzt_do = nz_do3d
661
662	DEALLOCATE ( local_pf )
663	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
664	ENDIF
665
666	ENDIF
667
668	IF ( .NOT. found ) THEN
669	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
670	resorted = .TRUE.
671	ENDIF
672
673	!
674	!-- Radiation quantity
675	IF ( .NOT. found .AND. radiation ) THEN
676	CALL radiation_data_output_3d( av, do3d(av,if), found, &
677	local_pf )
678	resorted = .TRUE.
679	ENDIF
680
681	!
682	!-- Chemistry model output
683	IF ( .NOT. found .AND. air_chemistry ) THEN
684	CALL chem_data_output_3d( av, do3d(av,if), found, &
685	local_pf, fill_value )
686	resorted = .TRUE.
687	ENDIF
688
689	!
690	!-- Plant canopy model output
691	IF ( .NOT. found .AND. plant_canopy ) THEN
692	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
693	fill_value )
694	resorted = .TRUE.
695	ENDIF
696
697	!
698	!-- User defined quantity
699	IF ( .NOT. found ) THEN
700	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
701	nzb_do, nzt_do )
702	resorted = .TRUE.
703	ENDIF
704
705	IF ( .NOT. found ) THEN
706	message_string = 'no output available for: ' // &
707	TRIM( do3d(av,if) )
708	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
709	ENDIF
710
711	END SELECT
712
713	!
714	!-- Resort the array to be output, if not done above
715	IF ( .NOT. resorted ) THEN
716	DO i = nxl, nxr
717	DO j = nys, nyn
718	DO k = nzb_do, nzt_do
719	local_pf(i,j,k) = MERGE( &
720	to_be_resorted(k,j,i), &
721	REAL( fill_value, KIND = wp ), &
722	BTEST( wall_flags_0(k,j,i), flag_nr ) )
723	ENDDO
724	ENDDO
725	ENDDO
726	ENDIF
727
728	!
729	!-- Output of the 3D-array
730	#if defined( __parallel )
731	IF ( netcdf_data_format < 5 ) THEN
732	!
733	!-- Non-parallel netCDF output. Data is output in parallel in
734	!-- FORTRAN binary format here, and later collected into one file by
735	!-- combine_plot_fields
736	IF ( myid == 0 ) THEN
737	WRITE ( 30 ) time_since_reference_point, &
738	do3d_time_count(av), av
739	ENDIF
740	DO i = 0, io_blocks-1
741	IF ( i == io_group ) THEN
742	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
743	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
744	ENDIF
745
746	CALL MPI_BARRIER( comm2d, ierr )
747
748	ENDDO
749
750	ELSE
751	#if defined( __netcdf )
752	!
753	!-- Parallel output in netCDF4/HDF5 format.
754	! IF ( nxr == nx .AND. nyn /= ny ) THEN
755	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
756	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
757	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
758	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
759	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
760	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
761	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
762	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
763	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
764	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
765	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
766	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
767	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
768	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
769	! ELSE
770	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
771	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
772	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
773	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
774	! ENDIF
775	CALL netcdf_handle_error( 'data_output_3d', 386 )
776	#endif
777	ENDIF
778	#else
779	#if defined( __netcdf )
780	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
781	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
782	start = (/ 1, 1, 1, do3d_time_count(av) /), &
783	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
784	CALL netcdf_handle_error( 'data_output_3d', 446 )
785	#endif
786	#endif
787
788	if = if + 1
789
790	!
791	!-- Deallocate temporary array
792	DEALLOCATE ( local_pf )
793
794	ENDDO
795
796	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
797
798	!
799	!-- Formats.
800	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
801	'label = ',A,A)
802
803	END SUBROUTINE data_output_3d

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