!> @file data_output_3d.f90 !--------------------------------------------------------------------------------! ! This file is part of PALM. ! ! PALM is free software: you can redistribute it and/or modify it under the terms ! of the GNU General Public License as published by the Free Software Foundation, ! either version 3 of the License, or (at your option) any later version. ! ! PALM is distributed in the hope that it will be useful, but WITHOUT ANY ! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR ! A PARTICULAR PURPOSE. See the GNU General Public License for more details. ! ! You should have received a copy of the GNU General Public License along with ! PALM. If not, see . ! ! Copyright 1997-2015 Leibniz Universitaet Hannover !--------------------------------------------------------------------------------! ! ! Current revisions: ! ------------------ ! Bugfix: test if time axis limit exceeds moved to point after call of check_open ! ! Former revisions: ! ----------------- ! $Id: data_output_3d.f90 1745 2016-02-05 13:06:51Z gronemeier $ ! ! 1691 2015-10-26 16:17:44Z maronga ! Added output of radiative heating rates for RRTMG ! ! 1682 2015-10-07 23:56:08Z knoop ! Code annotations made doxygen readable ! ! 1585 2015-04-30 07:05:52Z maronga ! Added support for RRTMG ! ! 1551 2015-03-03 14:18:16Z maronga ! Added suppport for land surface model and radiation model output. In the course ! of this action, the limits for vertical loops have been changed (from nzb and ! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output). ! Moreover, a new vertical grid zs was introduced. ! ! 1359 2014-04-11 17:15:14Z hoffmann ! New particle structure integrated. ! ! 1353 2014-04-08 15:21:23Z heinze ! REAL constants provided with KIND-attribute ! ! 1327 2014-03-21 11:00:16Z raasch ! parts concerning avs output removed, ! -netcdf output queries ! ! 1320 2014-03-20 08:40:49Z raasch ! ONLY-attribute added to USE-statements, ! kind-parameters added to all INTEGER and REAL declaration statements, ! kinds are defined in new module kinds, ! old module precision_kind is removed, ! revision history before 2012 removed, ! comment fields (!:) to be used for variable explanations added to ! all variable declaration statements ! ! 1318 2014-03-17 13:35:16Z raasch ! barrier argument removed from cpu_log, ! module interfaces removed ! ! 1308 2014-03-13 14:58:42Z fricke ! Check, if the limit of the time dimension is exceeded for parallel output ! To increase the performance for parallel output, the following is done: ! - Update of time axis is only done by PE0 ! ! 1244 2013-10-31 08:16:56Z raasch ! Bugfix for index bounds in case of 3d-parallel output ! ! 1115 2013-03-26 18:16:16Z hoffmann ! ql is calculated by calc_liquid_water_content ! ! 1106 2013-03-04 05:31:38Z raasch ! array_kind renamed precision_kind ! ! 1076 2012-12-05 08:30:18Z hoffmann ! Bugfix in output of ql ! ! 1053 2012-11-13 17:11:03Z hoffmann ! +nr, qr, prr, qc and averaged quantities ! ! 1036 2012-10-22 13:43:42Z raasch ! code put under GPL (PALM 3.9) ! ! 1031 2012-10-19 14:35:30Z raasch ! netCDF4 without parallel file support implemented ! ! 1007 2012-09-19 14:30:36Z franke ! Bugfix: missing calculation of ql_vp added ! ! Revision 1.1 1997/09/03 06:29:36 raasch ! Initial revision ! ! ! Description: ! ------------ !> Output of the 3D-arrays in netCDF and/or AVS format. !------------------------------------------------------------------------------! SUBROUTINE data_output_3d( av ) USE arrays_3d, & ONLY: e, nr, p, pt, q, qc, ql, ql_c, ql_v, qr, rho, sa, tend, u, v, & vpt, w USE averaging USE cloud_parameters, & ONLY: l_d_cp, prr, pt_d_t USE control_parameters, & ONLY: avs_data_file, cloud_physics, do3d, do3d_avs_n, & do3d_no, do3d_time_count, io_blocks, io_group, & message_string, netcdf_data_format, ntdim_3d, & nz_do3d, plot_3d_precision, psolver, simulated_time, & simulated_time_chr, skip_do_avs, time_since_reference_point USE cpulog, & ONLY: log_point, cpu_log USE indices, & ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzt, & nzb USE kinds USE land_surface_model_mod, & ONLY: m_soil, m_soil_av, nzb_soil, nzt_soil, t_soil, t_soil_av USE netcdf_control USE particle_attributes, & ONLY: grid_particles, number_of_particles, particles, & particle_advection_start, prt_count USE pegrid USE radiation_model_mod, & ONLY: rad_lw_in, rad_lw_in_av, rad_lw_out, rad_lw_out_av, & rad_lw_cs_hr, rad_lw_cs_hr_av, rad_lw_hr, rad_lw_hr_av, & rad_sw_in, rad_sw_in_av, rad_sw_out, rad_sw_out_av, & rad_sw_cs_hr, rad_sw_cs_hr_av, rad_sw_hr, rad_sw_hr_av IMPLICIT NONE CHARACTER (LEN=9) :: simulated_time_mod !< INTEGER(iwp) :: av !< INTEGER(iwp) :: i !< INTEGER(iwp) :: if !< INTEGER(iwp) :: j !< INTEGER(iwp) :: k !< INTEGER(iwp) :: n !< INTEGER(iwp) :: nzb_do !< vertical lower limit for data output INTEGER(iwp) :: nzt_do !< vertical upper limit for data output INTEGER(iwp) :: pos !< INTEGER(iwp) :: prec !< INTEGER(iwp) :: psi !< LOGICAL :: found !< LOGICAL :: resorted !< REAL(wp) :: mean_r !< REAL(wp) :: s_r2 !< REAL(wp) :: s_r3 !< REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< ! !-- Return, if nothing to output IF ( do3d_no(av) == 0 ) RETURN CALL cpu_log (log_point(14),'data_output_3d','start') ! !-- Open output file. !-- Also creates coordinate and fld-file for AVS. !-- For classic or 64bit netCDF output or output of other (old) data formats, !-- for a run on more than one PE, each PE opens its own file and !-- writes the data of its subdomain in binary format (regardless of the format !-- the user has requested). After the run, these files are combined to one !-- file by combine_plot_fields in the format requested by the user (netcdf !-- and/or avs). !-- For netCDF4/HDF5 output, data is written in parallel into one file. IF ( netcdf_data_format < 5 ) THEN CALL check_open( 30 ) IF ( myid == 0 ) CALL check_open( 106+av*10 ) ELSE CALL check_open( 106+av*10 ) ENDIF ! !-- For parallel netcdf output the time axis must be limited. Return, if this !-- limit is exceeded. This could be the case, if the simulated time exceeds !-- the given end time by the length of the given output interval. IF ( netcdf_data_format > 4 ) THEN IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN WRITE ( message_string, * ) 'Output of 3d data is not given at t=', & simulated_time, '&because the maximum ', & 'number of output time levels is ', & 'exceeded.' CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 ) CALL cpu_log( log_point(14), 'data_output_3d', 'stop' ) RETURN ENDIF ENDIF WRITE(9,*) '___hier4' CALL local_flush(9) ! !-- Update the netCDF time axis !-- In case of parallel output, this is only done by PE0 to increase the !-- performance. #if defined( __netcdf ) do3d_time_count(av) = do3d_time_count(av) + 1 IF ( myid == 0 ) THEN nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), & (/ time_since_reference_point /), & start = (/ do3d_time_count(av) /), & count = (/ 1 /) ) CALL handle_netcdf_error( 'data_output_3d', 376 ) ENDIF #endif ! !-- Loop over all variables to be written. if = 1 DO WHILE ( do3d(av,if)(1:1) /= ' ' ) ! !-- Store the array chosen on the temporary array. resorted = .FALSE. nzb_do = nzb nzt_do = nz_do3d ! !-- Allocate a temporary array with the desired output dimensions. ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) ) SELECT CASE ( TRIM( do3d(av,if) ) ) CASE ( 'e' ) IF ( av == 0 ) THEN to_be_resorted => e ELSE to_be_resorted => e_av ENDIF CASE ( 'lpt' ) IF ( av == 0 ) THEN to_be_resorted => pt ELSE to_be_resorted => lpt_av ENDIF CASE ( 'm_soil' ) nzb_do = nzb_soil nzt_do = nzt_soil ! !-- For soil model quantities, it is required to re-allocate local_pf DEALLOCATE ( local_pf ) ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) ) IF ( av == 0 ) THEN to_be_resorted => m_soil ELSE to_be_resorted => m_soil_av ENDIF CASE ( 'nr' ) IF ( av == 0 ) THEN to_be_resorted => nr ELSE to_be_resorted => nr_av ENDIF CASE ( 'p' ) IF ( av == 0 ) THEN IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp ) to_be_resorted => p ELSE IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp ) to_be_resorted => p_av ENDIF CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange) IF ( av == 0 ) THEN IF ( simulated_time >= particle_advection_start ) THEN tend = prt_count CALL exchange_horiz( tend, nbgp ) ELSE tend = 0.0_wp ENDIF DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = tend(k,j,i) ENDDO ENDDO ENDDO resorted = .TRUE. ELSE CALL exchange_horiz( pc_av, nbgp ) to_be_resorted => pc_av ENDIF CASE ( 'pr' ) ! mean particle radius (effective radius) IF ( av == 0 ) THEN IF ( simulated_time >= particle_advection_start ) THEN DO i = nxl, nxr DO j = nys, nyn DO k = nzb_do, nzt_do number_of_particles = prt_count(k,j,i) IF (number_of_particles <= 0) CYCLE particles => grid_particles(k,j,i)%particles(1:number_of_particles) s_r2 = 0.0_wp s_r3 = 0.0_wp DO n = 1, number_of_particles IF ( particles(n)%particle_mask ) THEN s_r2 = s_r2 + particles(n)%radius**2 * & particles(n)%weight_factor s_r3 = s_r3 + particles(n)%radius**3 * & particles(n)%weight_factor ENDIF ENDDO IF ( s_r2 > 0.0_wp ) THEN mean_r = s_r3 / s_r2 ELSE mean_r = 0.0_wp ENDIF tend(k,j,i) = mean_r ENDDO ENDDO ENDDO CALL exchange_horiz( tend, nbgp ) ELSE tend = 0.0_wp ENDIF DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = tend(k,j,i) ENDDO ENDDO ENDDO resorted = .TRUE. ELSE CALL exchange_horiz( pr_av, nbgp ) to_be_resorted => pr_av ENDIF CASE ( 'prr' ) IF ( av == 0 ) THEN CALL exchange_horiz( prr, nbgp ) DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb, nzt+1 local_pf(i,j,k) = prr(k,j,i) ENDDO ENDDO ENDDO ELSE CALL exchange_horiz( prr_av, nbgp ) DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb, nzt+1 local_pf(i,j,k) = prr_av(k,j,i) ENDDO ENDDO ENDDO ENDIF resorted = .TRUE. CASE ( 'pt' ) IF ( av == 0 ) THEN IF ( .NOT. cloud_physics ) THEN to_be_resorted => pt ELSE DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = pt(k,j,i) + l_d_cp * & pt_d_t(k) * & ql(k,j,i) ENDDO ENDDO ENDDO resorted = .TRUE. ENDIF ELSE to_be_resorted => pt_av ENDIF CASE ( 'q' ) IF ( av == 0 ) THEN to_be_resorted => q ELSE to_be_resorted => q_av ENDIF CASE ( 'qc' ) IF ( av == 0 ) THEN to_be_resorted => qc ELSE to_be_resorted => qc_av ENDIF CASE ( 'ql' ) IF ( av == 0 ) THEN to_be_resorted => ql ELSE to_be_resorted => ql_av ENDIF CASE ( 'ql_c' ) IF ( av == 0 ) THEN to_be_resorted => ql_c ELSE to_be_resorted => ql_c_av ENDIF CASE ( 'ql_v' ) IF ( av == 0 ) THEN to_be_resorted => ql_v ELSE to_be_resorted => ql_v_av ENDIF CASE ( 'ql_vp' ) IF ( av == 0 ) THEN IF ( simulated_time >= particle_advection_start ) THEN DO i = nxl, nxr DO j = nys, nyn DO k = nzb_do, nzt_do number_of_particles = prt_count(k,j,i) IF (number_of_particles <= 0) CYCLE particles => grid_particles(k,j,i)%particles(1:number_of_particles) DO n = 1, number_of_particles IF ( particles(n)%particle_mask ) THEN tend(k,j,i) = tend(k,j,i) + & particles(n)%weight_factor / & prt_count(k,j,i) ENDIF ENDDO ENDDO ENDDO ENDDO CALL exchange_horiz( tend, nbgp ) ELSE tend = 0.0_wp ENDIF DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = tend(k,j,i) ENDDO ENDDO ENDDO resorted = .TRUE. ELSE CALL exchange_horiz( ql_vp_av, nbgp ) to_be_resorted => ql_vp_av ENDIF CASE ( 'qr' ) IF ( av == 0 ) THEN to_be_resorted => qr ELSE to_be_resorted => qr_av ENDIF CASE ( 'qv' ) IF ( av == 0 ) THEN DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = q(k,j,i) - ql(k,j,i) ENDDO ENDDO ENDDO resorted = .TRUE. ELSE to_be_resorted => qv_av ENDIF CASE ( 'rad_sw_in' ) IF ( av == 0 ) THEN to_be_resorted => rad_sw_in ELSE to_be_resorted => rad_sw_in_av ENDIF CASE ( 'rad_sw_out' ) IF ( av == 0 ) THEN to_be_resorted => rad_sw_out ELSE to_be_resorted => rad_sw_out_av ENDIF CASE ( 'rad_sw_cs_hr' ) IF ( av == 0 ) THEN to_be_resorted => rad_sw_cs_hr ELSE to_be_resorted => rad_sw_cs_hr_av ENDIF CASE ( 'rad_sw_hr' ) IF ( av == 0 ) THEN to_be_resorted => rad_sw_hr ELSE to_be_resorted => rad_sw_hr_av ENDIF CASE ( 'rad_lw_in' ) IF ( av == 0 ) THEN to_be_resorted => rad_lw_in ELSE to_be_resorted => rad_lw_in_av ENDIF CASE ( 'rad_lw_out' ) IF ( av == 0 ) THEN to_be_resorted => rad_lw_out ELSE to_be_resorted => rad_lw_out_av ENDIF CASE ( 'rad_lw_cs_hr' ) IF ( av == 0 ) THEN to_be_resorted => rad_lw_cs_hr ELSE to_be_resorted => rad_lw_cs_hr_av ENDIF CASE ( 'rad_lw_hr' ) IF ( av == 0 ) THEN to_be_resorted => rad_lw_hr ELSE to_be_resorted => rad_lw_hr_av ENDIF CASE ( 'rho' ) IF ( av == 0 ) THEN to_be_resorted => rho ELSE to_be_resorted => rho_av ENDIF CASE ( 's' ) IF ( av == 0 ) THEN to_be_resorted => q ELSE to_be_resorted => s_av ENDIF CASE ( 'sa' ) IF ( av == 0 ) THEN to_be_resorted => sa ELSE to_be_resorted => sa_av ENDIF CASE ( 't_soil' ) nzb_do = nzb_soil nzt_do = nzt_soil ! !-- For soil model quantities, it is required to re-allocate local_pf DEALLOCATE ( local_pf ) ALLOCATE( local_pf(nxlg:nxrg,nysg:nyng,nzb_do:nzt_do) ) IF ( av == 0 ) THEN to_be_resorted => t_soil ELSE to_be_resorted => t_soil_av ENDIF CASE ( 'u' ) IF ( av == 0 ) THEN to_be_resorted => u ELSE to_be_resorted => u_av ENDIF CASE ( 'v' ) IF ( av == 0 ) THEN to_be_resorted => v ELSE to_be_resorted => v_av ENDIF CASE ( 'vpt' ) IF ( av == 0 ) THEN to_be_resorted => vpt ELSE to_be_resorted => vpt_av ENDIF CASE ( 'w' ) IF ( av == 0 ) THEN to_be_resorted => w ELSE to_be_resorted => w_av ENDIF CASE DEFAULT ! !-- User defined quantity CALL user_data_output_3d( av, do3d(av,if), found, local_pf, & nzb_do, nzt_do ) resorted = .TRUE. IF ( .NOT. found ) THEN message_string = 'no output available for: ' // & TRIM( do3d(av,if) ) CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 ) ENDIF END SELECT ! !-- Resort the array to be output, if not done above IF ( .NOT. resorted ) THEN DO i = nxlg, nxrg DO j = nysg, nyng DO k = nzb_do, nzt_do local_pf(i,j,k) = to_be_resorted(k,j,i) ENDDO ENDDO ENDDO ENDIF ! !-- Output of the 3D-array #if defined( __parallel ) IF ( netcdf_data_format < 5 ) THEN ! !-- Non-parallel netCDF output. Data is output in parallel in !-- FORTRAN binary format here, and later collected into one file by !-- combine_plot_fields IF ( myid == 0 ) THEN WRITE ( 30 ) time_since_reference_point, & do3d_time_count(av), av ENDIF DO i = 0, io_blocks-1 IF ( i == io_group ) THEN WRITE ( 30 ) nxlg, nxrg, nysg, nyng, nzb_do, nzt_do WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do) ENDIF #if defined( __parallel ) CALL MPI_BARRIER( comm2d, ierr ) #endif ENDDO ELSE #if defined( __netcdf ) ! !-- Parallel output in netCDF4/HDF5 format. !-- Do not output redundant ghost point data except for the !-- boundaries of the total domain. IF ( nxr == nx .AND. nyn /= ny ) THEN nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), & start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), & count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) ) ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), & start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), & count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) ) ELSEIF ( nxr == nx .AND. nyn == ny ) THEN nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), & start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), & count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) ) ELSE nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), & start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), & count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) ) ENDIF CALL handle_netcdf_error( 'data_output_3d', 386 ) #endif ENDIF #else #if defined( __netcdf ) nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), & local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), & start = (/ 1, 1, 1, do3d_time_count(av) /), & count = (/ nx+2, ny+2, nzt_do-nzb_do+1, 1 /) ) CALL handle_netcdf_error( 'data_output_3d', 446 ) #endif #endif if = if + 1 ! !-- Deallocate temporary array DEALLOCATE ( local_pf ) ENDDO CALL cpu_log( log_point(14), 'data_output_3d', 'stop' ) ! !-- Formats. 3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ & 'label = ',A,A) END SUBROUTINE data_output_3d