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data_output_3d.f90 @ 493

Last change on this file since 493 was 493, checked in by raasch, 14 years ago

New:
---
Output in NetCDF4-format. New d3par-parameter netcdf_data_format.

(check_open, check_parameters, close_file, data_output_2d, data_output_3d, header, modules, netcdf, parin)

Modules to be loaded for compilation (mbuild) or job execution (mrun)
can be given in the configuration file using variable modules. Example:

%modules ifort/11.0.069:netcdf lcsgih parallel

This method replaces the (undocumented) mpilib-variable.

WARNING: All fixed settings of modules in the scripts mbuild, mrun, and subjob
have been removed! Please set the modules variable appropriately in your
configuration file. (mbuild, mrun, subjob)

Changed:

Parameters netcdf_64bit and netcdf_64bit_3d have been removed. Use
netcdf_data_format = 2 for choosing the classic 64bit-offset format (this is
the default). The offset-format can not be set independently for the
3d-output-data any more.

Parameters netcdf_format_mask, netcdf_format_mask_av, and variables
nc_format_mask, format_parallel_io removed. They are replaced by the new
parameter netcdf_data_format. (check_open, close_file,
data_output_mask, header, init_masks, modules, parin)

Errors:

bugfix in trunk/UTIL/Makefile: forgot to compile for interpret_config

Bugfix: timeseries data have to be collected by PE0 (user_statistics)

Property svn:keywords set to Id

File size: 14.9 KB

Rev	Line
[1]	1	SUBROUTINE data_output_3d( av )
	2
	3	!------------------------------------------------------------------------------!
[254]	4	! Current revisions:
[1]	5	! -----------------
[392]	6	!
	7	!
	8	! Former revisions:
	9	! -----------------
	10	! $Id: data_output_3d.f90 493 2010-03-01 08:30:24Z raasch $
	11	!
	12	! 355 2009-07-17 01:03:01Z letzel
[291]	13	! simulated_time in NetCDF output replaced by time_since_reference_point.
[263]	14	! Output of NetCDF messages with aid of message handling routine.
[254]	15	! Output of messages replaced by message handling routine.
[355]	16	! Bugfix: to_be_resorted => s_av for time-averaged scalars
[1]	17	!
[98]	18	! 96 2007-06-04 08:07:41Z raasch
	19	! Output of density and salinity
	20	!
[77]	21	! 75 2007-03-22 09:54:05Z raasch
	22	! 2nd+3rd argument removed from exchange horiz
	23	!
[3]	24	! RCS Log replace by Id keyword, revision history cleaned up
	25	!
[1]	26	! Revision 1.3 2006/06/02 15:18:59 raasch
	27	! +argument "found", -argument grid in call of routine user_data_output_3d
	28	!
	29	! Revision 1.2 2006/02/23 10:23:07 raasch
	30	! Former subroutine plot_3d renamed data_output_3d, pl.. renamed do..,
	31	! .._anz renamed .._n,
	32	! output extended to (almost) all quantities, output of user-defined quantities
	33	!
	34	! Revision 1.1 1997/09/03 06:29:36 raasch
	35	! Initial revision
	36	!
	37	!
	38	! Description:
	39	! ------------
	40	! Output of the 3D-arrays in NetCDF and/or AVS format.
	41	!------------------------------------------------------------------------------!
	42
	43	USE array_kind
	44	USE arrays_3d
	45	USE averaging
	46	USE cloud_parameters
	47	USE control_parameters
	48	USE cpulog
	49	USE indices
	50	USE interfaces
	51	USE netcdf_control
	52	USE particle_attributes
	53	USE pegrid
	54
	55	IMPLICIT NONE
	56
	57	CHARACTER (LEN=9) :: simulated_time_mod
	58
	59	INTEGER :: av, i, if, j, k, n, pos, prec, psi
	60
	61	LOGICAL :: found, resorted
	62
	63	REAL :: mean_r, s_r3, s_r4
	64
	65	REAL(spk), DIMENSION(:,:,:), ALLOCATABLE :: local_pf
	66
	67	REAL, DIMENSION(:,:,:), POINTER :: to_be_resorted
	68
	69	!
	70	!-- Return, if nothing to output
	71	IF ( do3d_no(av) == 0 ) RETURN
	72
	73	CALL cpu_log (log_point(14),'data_output_3d','start')
	74
	75	!
	76	!-- Open output file.
	77	!-- Also creates coordinate and fld-file for AVS.
[493]	78	!-- For classic or 64bit NetCDF output or output of other (old) data formats,
	79	!-- for a run on more than one PE, each PE opens its own file and
[1]	80	!-- writes the data of its subdomain in binary format (regardless of the format
	81	!-- the user has requested). After the run, these files are combined to one
	82	!-- file by combine_plot_fields in the format requested by the user (netcdf
[493]	83	!-- and/or avs).
	84	!-- For NetCDF4/HDF5 output, data is written in parallel into one file.
	85	IF ( netcdf_output ) THEN
	86	IF ( netcdf_data_format < 3 ) THEN
	87	CALL check_open( 30 )
	88	IF ( myid == 0 ) CALL check_open( 106+av*10 )
	89	ELSE
	90	CALL check_open( 106+av*10 )
	91	ENDIF
	92	ELSE
	93	IF ( avs_output .OR. ( numprocs > 1 ) ) CALL check_open( 30 )
	94	ENDIF
[1]	95
	96	!
	97	!-- Allocate a temporary array with the desired output dimensions.
	98	ALLOCATE( local_pf(nxl-1:nxr+1,nys-1:nyn+1,nzb:nz_do3d) )
	99
	100	!
	101	!-- Update the NetCDF time axis
	102	#if defined( __netcdf )
[493]	103	IF ( myid == 0 .OR. netcdf_data_format > 2 ) THEN
	104	do3d_time_count(av) = do3d_time_count(av) + 1
	105	IF ( netcdf_output ) THEN
	106	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	107	(/ time_since_reference_point /), &
	108	start = (/ do3d_time_count(av) /), &
	109	count = (/ 1 /) )
	110	CALL handle_netcdf_error( 'data_output_3d', 376 )
	111	ENDIF
[1]	112	ENDIF
	113	#endif
	114
	115	!
	116	!-- Loop over all variables to be written.
	117	if = 1
	118
	119	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
	120	!
	121	!-- Set the precision for data compression.
	122	IF ( do3d_compress ) THEN
	123	DO i = 1, 100
	124	IF ( plot_3d_precision(i)%variable == do3d(av,if) ) THEN
	125	prec = plot_3d_precision(i)%precision
	126	EXIT
	127	ENDIF
	128	ENDDO
	129	ENDIF
	130
	131	!
	132	!-- Store the array chosen on the temporary array.
	133	resorted = .FALSE.
	134	SELECT CASE ( TRIM( do3d(av,if) ) )
	135
	136	CASE ( 'e' )
	137	IF ( av == 0 ) THEN
	138	to_be_resorted => e
	139	ELSE
	140	to_be_resorted => e_av
	141	ENDIF
	142
	143	CASE ( 'p' )
	144	IF ( av == 0 ) THEN
	145	to_be_resorted => p
	146	ELSE
	147	to_be_resorted => p_av
	148	ENDIF
	149
	150	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	151	IF ( av == 0 ) THEN
	152	tend = prt_count
[75]	153	CALL exchange_horiz( tend )
[1]	154	DO i = nxl-1, nxr+1
	155	DO j = nys-1, nyn+1
	156	DO k = nzb, nz_do3d
	157	local_pf(i,j,k) = tend(k,j,i)
	158	ENDDO
	159	ENDDO
	160	ENDDO
	161	resorted = .TRUE.
	162	ELSE
[75]	163	CALL exchange_horiz( pc_av )
[1]	164	to_be_resorted => pc_av
	165	ENDIF
	166
	167	CASE ( 'pr' ) ! mean particle radius
	168	IF ( av == 0 ) THEN
	169	DO i = nxl, nxr
	170	DO j = nys, nyn
	171	DO k = nzb, nzt+1
	172	psi = prt_start_index(k,j,i)
	173	s_r3 = 0.0
	174	s_r4 = 0.0
	175	DO n = psi, psi+prt_count(k,j,i)-1
	176	s_r3 = s_r3 + particles(n)%radius**3
	177	s_r4 = s_r4 + particles(n)%radius**4
	178	ENDDO
	179	IF ( s_r3 /= 0.0 ) THEN
	180	mean_r = s_r4 / s_r3
	181	ELSE
	182	mean_r = 0.0
	183	ENDIF
	184	tend(k,j,i) = mean_r
	185	ENDDO
	186	ENDDO
	187	ENDDO
[75]	188	CALL exchange_horiz( tend )
[1]	189	DO i = nxl-1, nxr+1
	190	DO j = nys-1, nyn+1
	191	DO k = nzb, nzt+1
	192	local_pf(i,j,k) = tend(k,j,i)
	193	ENDDO
	194	ENDDO
	195	ENDDO
	196	resorted = .TRUE.
	197	ELSE
[75]	198	CALL exchange_horiz( pr_av )
[1]	199	to_be_resorted => pr_av
	200	ENDIF
	201
	202	CASE ( 'pt' )
	203	IF ( av == 0 ) THEN
	204	IF ( .NOT. cloud_physics ) THEN
	205	to_be_resorted => pt
	206	ELSE
	207	DO i = nxl-1, nxr+1
	208	DO j = nys-1, nyn+1
	209	DO k = nzb, nz_do3d
	210	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	211	pt_d_t(k) * &
	212	ql(k,j,i)
	213	ENDDO
	214	ENDDO
	215	ENDDO
	216	resorted = .TRUE.
	217	ENDIF
	218	ELSE
	219	to_be_resorted => pt_av
	220	ENDIF
	221
	222	CASE ( 'q' )
	223	IF ( av == 0 ) THEN
	224	to_be_resorted => q
	225	ELSE
	226	to_be_resorted => q_av
	227	ENDIF
	228
	229	CASE ( 'ql' )
	230	IF ( av == 0 ) THEN
	231	to_be_resorted => ql
	232	ELSE
	233	to_be_resorted => ql_av
	234	ENDIF
	235
	236	CASE ( 'ql_c' )
	237	IF ( av == 0 ) THEN
	238	to_be_resorted => ql_c
	239	ELSE
	240	to_be_resorted => ql_c_av
	241	ENDIF
	242
	243	CASE ( 'ql_v' )
	244	IF ( av == 0 ) THEN
	245	to_be_resorted => ql_v
	246	ELSE
	247	to_be_resorted => ql_v_av
	248	ENDIF
	249
	250	CASE ( 'ql_vp' )
	251	IF ( av == 0 ) THEN
	252	to_be_resorted => ql_vp
	253	ELSE
	254	to_be_resorted => ql_vp_av
	255	ENDIF
	256
	257	CASE ( 'qv' )
	258	IF ( av == 0 ) THEN
	259	DO i = nxl-1, nxr+1
	260	DO j = nys-1, nyn+1
	261	DO k = nzb, nz_do3d
	262	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	263	ENDDO
	264	ENDDO
	265	ENDDO
	266	resorted = .TRUE.
	267	ELSE
	268	to_be_resorted => qv_av
	269	ENDIF
	270
[96]	271	CASE ( 'rho' )
	272	IF ( av == 0 ) THEN
	273	to_be_resorted => rho
	274	ELSE
	275	to_be_resorted => rho_av
	276	ENDIF
	277
[1]	278	CASE ( 's' )
	279	IF ( av == 0 ) THEN
	280	to_be_resorted => q
	281	ELSE
[355]	282	to_be_resorted => s_av
[1]	283	ENDIF
	284
[96]	285	CASE ( 'sa' )
	286	IF ( av == 0 ) THEN
	287	to_be_resorted => sa
	288	ELSE
	289	to_be_resorted => sa_av
	290	ENDIF
	291
[1]	292	CASE ( 'u' )
	293	IF ( av == 0 ) THEN
	294	to_be_resorted => u
	295	ELSE
	296	to_be_resorted => u_av
	297	ENDIF
	298
	299	CASE ( 'v' )
	300	IF ( av == 0 ) THEN
	301	to_be_resorted => v
	302	ELSE
	303	to_be_resorted => v_av
	304	ENDIF
	305
	306	CASE ( 'vpt' )
	307	IF ( av == 0 ) THEN
	308	to_be_resorted => vpt
	309	ELSE
	310	to_be_resorted => vpt_av
	311	ENDIF
	312
	313	CASE ( 'w' )
	314	IF ( av == 0 ) THEN
	315	to_be_resorted => w
	316	ELSE
	317	to_be_resorted => w_av
	318	ENDIF
	319
	320	CASE DEFAULT
	321	!
	322	!-- User defined quantity
	323	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	324	nz_do3d )
	325	resorted = .TRUE.
	326
[254]	327	IF ( .NOT. found ) THEN
[274]	328	message_string = 'no output available for: ' // &
	329	TRIM( do3d(av,if) )
[254]	330	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	331	ENDIF
	332
	333	END SELECT
	334
	335	!
	336	!-- Resort the array to be output, if not done above
	337	IF ( .NOT. resorted ) THEN
	338	DO i = nxl-1, nxr+1
	339	DO j = nys-1, nyn+1
	340	DO k = nzb, nz_do3d
	341	local_pf(i,j,k) = to_be_resorted(k,j,i)
	342	ENDDO
	343	ENDDO
	344	ENDDO
	345	ENDIF
	346
	347	!
	348	!-- Output of the volume data information for the AVS-FLD-file.
	349	do3d_avs_n = do3d_avs_n + 1
	350	IF ( myid == 0 .AND. avs_output ) THEN
	351	!
	352	!-- AVS-labels must not contain any colons. Hence they must be removed
	353	!-- from the time character string.
	354	simulated_time_mod = simulated_time_chr
	355	DO WHILE ( SCAN( simulated_time_mod, ':' ) /= 0 )
	356	pos = SCAN( simulated_time_mod, ':' )
	357	simulated_time_mod(pos:pos) = '/'
	358	ENDDO
	359
	360	IF ( av == 0 ) THEN
	361	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	362	skip_do_avs, TRIM( do3d(av,if) ), &
	363	TRIM( simulated_time_mod )
	364	ELSE
	365	WRITE ( 33, 3300 ) do3d_avs_n, TRIM( avs_data_file ), &
	366	skip_do_avs, TRIM( do3d(av,if) ) // &
	367	' averaged', TRIM( simulated_time_mod )
	368	ENDIF
	369	!
	370	!-- Determine the Skip-value for the next array. Record end and start
	371	!-- require 4 byte each.
	372	skip_do_avs = skip_do_avs + ( ((nx+2)(ny+2)(nz_do3d+1)) * 4 + 8 )
	373	ENDIF
	374
	375	!
	376	!-- Output of the 3D-array. (compressed/uncompressed)
	377	IF ( do3d_compress ) THEN
	378	!
	379	!-- Compression, output of compression information on FLD-file and output
	380	!-- of compressed data.
	381	CALL write_compressed( local_pf, 30, 33, myid, nxl, nxr, nyn, nys, &
	382	nzb, nz_do3d, prec )
	383	ELSE
	384	!
	385	!-- Uncompressed output.
	386	#if defined( __parallel )
[493]	387	IF ( netcdf_output ) THEN
	388	IF ( netcdf_data_format < 3 ) THEN
	389	!
	390	!-- Classic or 64bit format. Data is output in parallel in FORTRAN
	391	!-- binary format here, and later collected into one file by
	392	!-- combine_plot_fields
	393	IF ( myid == 0 ) THEN
	394	WRITE ( 30 ) simulated_time, do3d_time_count(av), av
	395	ENDIF
	396	WRITE ( 30 ) nxl-1, nxr+1, nys-1, nyn+1, nzb, nz_do3d
	397	WRITE ( 30 ) local_pf
	398
	399	ELSE
	400	!
	401	!-- Output in NetCDF4/HDF5 format.
	402	!-- Do not output redundant ghost point data except for the
	403	!-- boundaries of the total domain.
	404	IF ( nxr == nx .AND. nyn /= ny ) THEN
	405	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	406	local_pf(nxl:nxr+1,nys:nyn,nzb:nz_do3d), &
	407	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	408	count = (/ nxr-nxl+2, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
	409	ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	410	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	411	local_pf(nxl:nxr,nys:nyn+1,nzb:nz_do3d), &
	412	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	413	count = (/ nxr-nxl+1, nyn-nys+2, nz_do3d-nzb+1, 1 /) )
	414	ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	415	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	416	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
	417	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	418	count = (/ nxr-nxl+2, nyn-nys+2, nz_do3d-nzb+1, 1 /) )
	419	ELSE
	420	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	421	local_pf(nxl:nxr,nys:nyn,nzb:nz_do3d), &
	422	start = (/ nxl+1, nys+1, nzb+1, do3d_time_count(av) /), &
	423	count = (/ nxr-nxl+1, nyn-nys+1, nz_do3d-nzb+1, 1 /) )
	424	ENDIF
	425	CALL handle_netcdf_error( 'data_output_3d', 386 )
	426	ENDIF
[1]	427	ENDIF
	428	#else
	429	IF ( avs_output ) THEN
	430	WRITE ( 30 ) local_pf(nxl:nxr+1,nys:nyn+1,:)
	431	ENDIF
	432	#if defined( __netcdf )
	433	IF ( netcdf_output ) THEN
[493]	434
	435	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	436	local_pf(nxl:nxr+1,nys:nyn+1,nzb:nz_do3d), &
	437	start = (/ 1, 1, 1, do3d_time_count(av) /), &
	438	count = (/ nx+2, ny+2, nz_do3d-nzb+1, 1 /) )
	439	CALL handle_netcdf_error( 'data_output_3d', 446 )
	440
[1]	441	ENDIF
	442	#endif
	443	#endif
	444	ENDIF
	445
	446	if = if + 1
	447
	448	ENDDO
	449
	450	!
	451	!-- Deallocate temporary array.
	452	DEALLOCATE( local_pf )
	453
	454
	455	CALL cpu_log (log_point(14),'data_output_3d','stop','nobarrier')
	456
	457	!
	458	!-- Formats.
	459	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
	460	'label = ',A,A)
	461
	462	END SUBROUTINE data_output_3d

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