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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3582

Last change on this file since 3582 was 3582, checked in by suehring, 5 years ago
Merge branch salsa with trunk
Property svn:keywords set to `Id`
File size: 32.7 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[3582]	22	! Move the control parameter "salsa" from salsa_mod to control_parameters
	23	! (M. Kurppa)
	24	!
[1552]	25	! Former revisions:
	26	! -----------------
	27	! $Id: data_output_3d.f90 3582 2018-11-29 19:16:36Z suehring $
[3554]	28	! add variable description; rename variable 'if' into 'ivar'
	29	!
	30	! 3525 2018-11-14 16:06:14Z kanani
[3525]	31	! Changes related to clean-up of biometeorology (dom_dwd_user)
	32	!
	33	! 3467 2018-10-30 19:05:21Z suehring
[3467]	34	! Implementation of a new aerosol module salsa.
	35	!
	36	! 3448 2018-10-29 18:14:31Z kanani
[3448]	37	! Adjustment of biometeorology calls
	38	!
	39	! 3421 2018-10-24 18:39:32Z gronemeier
[3421]	40	! Renamed output variables
	41	!
	42	! 3419 2018-10-24 17:27:31Z gronemeier
[3405]	43	! bugfix: nx, ny are required in non-parallel case
	44	!
	45	! 3337 2018-10-12 15:17:09Z kanani
[3337]	46	! (from branch resler)
	47	! Add Biometeorology
	48	!
	49	! 3294 2018-10-01 02:37:10Z raasch
[3294]	50	! changes concerning modularization of ocean option
	51	!
	52	! 3274 2018-09-24 15:42:55Z knoop
[3274]	53	! Modularization of all bulk cloud physics code components
	54	!
	55	! 3241 2018-09-12 15:02:00Z raasch
[3241]	56	! unused variables and format statements removed
	57	!
	58	! 3049 2018-05-29 13:52:36Z Giersch
[3049]	59	! Error messages revised
	60	!
	61	! 3045 2018-05-28 07:55:41Z Giersch
[3045]	62	! Error message revised
	63	!
	64	! 3014 2018-05-09 08:42:38Z maronga
[3014]	65	! Added nzb_do and nzt_do for some modules for 3d output
	66	!
	67	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	68	! Allocation checks implemented (averaged data will be assigned to fill values
	69	! if no allocation happened so far)
	70	!
	71	! 2967 2018-04-13 11:22:08Z raasch
[2967]	72	! bugfix: missing parallel cpp-directives added
	73	!
	74	! 2817 2018-02-19 16:32:21Z knoop
[2817]	75	! Preliminary gust module interface implemented
	76	!
	77	! 2766 2018-01-22 17:17:47Z kanani
[2766]	78	! Removed preprocessor directive __chem
	79	!
	80	! 2756 2018-01-16 18:11:14Z suehring
[2756]	81	! Fill values for 3D output of chemical species introduced.
	82	!
	83	! 2746 2018-01-15 12:06:04Z suehring
[2746]	84	! Move flag plant canopy to modules
	85	!
	86	! 2718 2018-01-02 08:49:38Z maronga
[2716]	87	! Corrected "Former revisions" section
	88	!
	89	! 2696 2017-12-14 17:12:51Z kanani
	90	! Change in file header (GPL part)
[2696]	91	! Implementation of turbulence_closure_mod (TG)
	92	! Implementation of chemistry module (FK)
	93	! Set fill values at topography grid points or e.g. non-natural-type surface
	94	! in case of LSM output (MS)
	95	!
	96	! 2512 2017-10-04 08:26:59Z raasch
[2512]	97	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	98	! no output of ghost layer data
	99	!
	100	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	101	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	102	! includes two more prognostic equations for cloud drop concentration (nc)
	103	! and cloud water content (qc).
	104	!
	105	! 2233 2017-05-30 18:08:54Z suehring
[1552]	106	!
[2233]	107	! 2232 2017-05-30 17:47:52Z suehring
	108	! Adjustments to new topography concept
	109	!
[2210]	110	! 2209 2017-04-19 09:34:46Z kanani
	111	! Added plant canopy model output
	112	!
[2032]	113	! 2031 2016-10-21 15:11:58Z knoop
	114	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	115	!
[2012]	116	! 2011 2016-09-19 17:29:57Z kanani
	117	! Flag urban_surface is now defined in module control_parameters,
	118	! changed prefix for urban surface model output to "usm_",
	119	! introduced control parameter varnamelength for LEN of trimvar.
	120	!
[2008]	121	! 2007 2016-08-24 15:47:17Z kanani
	122	! Added support for new urban surface model (temporary modifications of
	123	! SELECT CASE ( ) necessary, see variable trimvar)
	124	!
[2001]	125	! 2000 2016-08-20 18:09:15Z knoop
	126	! Forced header and separation lines into 80 columns
	127	!
[1981]	128	! 1980 2016-07-29 15:51:57Z suehring
	129	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	130	! to .F.
	131	!
[1977]	132	! 1976 2016-07-27 13:28:04Z maronga
	133	! Output of radiation quantities is now done directly in the respective module
	134	!
[1973]	135	! 1972 2016-07-26 07:52:02Z maronga
	136	! Output of land surface quantities is now done directly in the respective module.
	137	! Unnecessary directive __parallel removed.
	138	!
[1961]	139	! 1960 2016-07-12 16:34:24Z suehring
	140	! Scalar surface flux added
	141	!
[1851]	142	! 1849 2016-04-08 11:33:18Z hoffmann
	143	! prr moved to arrays_3d
	144	!
[1823]	145	! 1822 2016-04-07 07:49:42Z hoffmann
	146	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	147	!
[1809]	148	! 1808 2016-04-05 19:44:00Z raasch
	149	! test output removed
	150	!
[1784]	151	! 1783 2016-03-06 18:36:17Z raasch
	152	! name change of netcdf routines and module + related changes
	153	!
[1746]	154	! 1745 2016-02-05 13:06:51Z gronemeier
	155	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	156	!
[1692]	157	! 1691 2015-10-26 16:17:44Z maronga
	158	! Added output of radiative heating rates for RRTMG
	159	!
[1683]	160	! 1682 2015-10-07 23:56:08Z knoop
	161	! Code annotations made doxygen readable
	162	!
[1586]	163	! 1585 2015-04-30 07:05:52Z maronga
	164	! Added support for RRTMG
	165	!
[1552]	166	! 1551 2015-03-03 14:18:16Z maronga
[1551]	167	! Added suppport for land surface model and radiation model output. In the course
	168	! of this action, the limits for vertical loops have been changed (from nzb and
	169	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	170	! Moreover, a new vertical grid zs was introduced.
[1329]	171	!
[1360]	172	! 1359 2014-04-11 17:15:14Z hoffmann
	173	! New particle structure integrated.
	174	!
[1354]	175	! 1353 2014-04-08 15:21:23Z heinze
	176	! REAL constants provided with KIND-attribute
	177	!
[1329]	178	! 1327 2014-03-21 11:00:16Z raasch
	179	! parts concerning avs output removed,
	180	! -netcdf output queries
	181	!
[1321]	182	! 1320 2014-03-20 08:40:49Z raasch
[1320]	183	! ONLY-attribute added to USE-statements,
	184	! kind-parameters added to all INTEGER and REAL declaration statements,
	185	! kinds are defined in new module kinds,
	186	! old module precision_kind is removed,
	187	! revision history before 2012 removed,
	188	! comment fields (!:) to be used for variable explanations added to
	189	! all variable declaration statements
[674]	190	!
[1319]	191	! 1318 2014-03-17 13:35:16Z raasch
	192	! barrier argument removed from cpu_log,
	193	! module interfaces removed
	194	!
[1309]	195	! 1308 2014-03-13 14:58:42Z fricke
	196	! Check, if the limit of the time dimension is exceeded for parallel output
	197	! To increase the performance for parallel output, the following is done:
	198	! - Update of time axis is only done by PE0
	199	!
[1245]	200	! 1244 2013-10-31 08:16:56Z raasch
	201	! Bugfix for index bounds in case of 3d-parallel output
	202	!
[1116]	203	! 1115 2013-03-26 18:16:16Z hoffmann
	204	! ql is calculated by calc_liquid_water_content
	205	!
[1107]	206	! 1106 2013-03-04 05:31:38Z raasch
	207	! array_kind renamed precision_kind
	208	!
[1077]	209	! 1076 2012-12-05 08:30:18Z hoffmann
	210	! Bugfix in output of ql
	211	!
[1054]	212	! 1053 2012-11-13 17:11:03Z hoffmann
	213	! +nr, qr, prr, qc and averaged quantities
	214	!
[1037]	215	! 1036 2012-10-22 13:43:42Z raasch
	216	! code put under GPL (PALM 3.9)
	217	!
[1035]	218	! 1031 2012-10-19 14:35:30Z raasch
	219	! netCDF4 without parallel file support implemented
	220	!
[1008]	221	! 1007 2012-09-19 14:30:36Z franke
	222	! Bugfix: missing calculation of ql_vp added
	223	!
[1]	224	! Revision 1.1 1997/09/03 06:29:36 raasch
	225	! Initial revision
	226	!
	227	!
	228	! Description:
	229	! ------------
[1682]	230	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	231	!------------------------------------------------------------------------------!
[1682]	232	SUBROUTINE data_output_3d( av )
	233
[1]	234
[1320]	235	USE arrays_3d, &
[3294]	236	ONLY: d_exner, e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, s, &
	237	tend, u, v, vpt, w
[3274]	238
[1]	239	USE averaging
[3274]	240
	241	USE basic_constants_and_equations_mod, &
	242	ONLY: lv_d_cp
	243
[3448]	244	USE biometeorology_mod, &
[3525]	245	ONLY: bio_data_output_3d
[3448]	246
[3274]	247	USE bulk_cloud_model_mod, &
	248	ONLY: bulk_cloud_model, bcm_data_output_3d
	249
[2696]	250	USE chemistry_model_mod, &
	251	ONLY: chem_data_output_3d
	252
[1320]	253	USE control_parameters, &
[3448]	254	ONLY: air_chemistry, biometeorology, do3d, do3d_no, do3d_time_count, &
[2696]	255	io_blocks, io_group, land_surface, message_string, &
[3294]	256	ntdim_3d, nz_do3d, ocean_mode, plant_canopy, &
[3582]	257	psolver, salsa, simulated_time, time_since_reference_point, &
[2232]	258	urban_surface, varnamelength
[3274]	259
[1320]	260	USE cpulog, &
	261	ONLY: log_point, cpu_log
[2817]	262
	263	USE gust_mod, &
	264	ONLY: gust_data_output_3d, gust_module_enabled
[3274]	265
[3405]	266	#if defined( __parallel )
[1320]	267	USE indices, &
[3241]	268	ONLY: nbgp, nxl, nxlg, nxr, nxrg, nyn, nyng, nys, nysg, nzb, nzt, &
	269	wall_flags_0
[3405]	270	#else
	271	USE indices, &
	272	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	273	nzt, wall_flags_0
	274	#endif
[3274]	275
[1320]	276	USE kinds
[3274]	277
[1551]	278	USE land_surface_model_mod, &
[2232]	279	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	280
[1783]	281	#if defined( __netcdf )
	282	USE NETCDF
	283	#endif
	284
	285	USE netcdf_interface, &
[2696]	286	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	287	netcdf_data_format, netcdf_handle_error
[1320]	288
[3294]	289	USE ocean_mod, &
	290	ONLY: ocean_data_output_3d
	291
[1320]	292	USE particle_attributes, &
[1359]	293	ONLY: grid_particles, number_of_particles, particles, &
	294	particle_advection_start, prt_count
[1320]	295
[1]	296	USE pegrid
	297
[2209]	298	USE plant_canopy_model_mod, &
[2746]	299	ONLY: pcm_data_output_3d
[2209]	300
[1585]	301	USE radiation_model_mod, &
[2696]	302	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[3467]	303
	304	USE salsa_mod, &
[3582]	305	ONLY: salsa_data_output_3d
[1585]	306
[2696]	307	USE turbulence_closure_mod, &
	308	ONLY: tcm_data_output_3d
	309
[2007]	310	USE urban_surface_mod, &
[2696]	311	ONLY: usm_data_output_3d
[1585]	312
[2007]	313
[1]	314	IMPLICIT NONE
	315
[3554]	316	INTEGER(iwp) :: av !< flag for (non-)average output
[2696]	317	INTEGER(iwp) :: flag_nr !< number of masking flag
[3554]	318	INTEGER(iwp) :: i !< loop index
	319	INTEGER(iwp) :: ivar !< variable index
	320	INTEGER(iwp) :: j !< loop index
	321	INTEGER(iwp) :: k !< loop index
	322	INTEGER(iwp) :: n !< loop index
[1682]	323	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	324	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	325
[3554]	326	LOGICAL :: found !< true if output variable was found
	327	LOGICAL :: resorted !< true if variable is resorted
[1]	328
[3554]	329	REAL(wp) :: mean_r !< mean particle radius
	330	REAL(wp) :: s_r2 !< sum( particle-radius**2 )
	331	REAL(wp) :: s_r3 !< sum( particle-radius**3 )
[1]	332
[3554]	333	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !< output array
[1]	334
[3554]	335	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !< pointer to array which shall be output
[1]	336
[2011]	337	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	338
[1]	339	!
	340	!-- Return, if nothing to output
	341	IF ( do3d_no(av) == 0 ) RETURN
	342
	343	CALL cpu_log (log_point(14),'data_output_3d','start')
	344
	345	!
	346	!-- Open output file.
[2512]	347	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	348	!-- own file and writes the data of its subdomain in binary format. After the
	349	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	350	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	351	IF ( netcdf_data_format < 5 ) THEN
[2967]	352	#if defined( __parallel )
[1327]	353	CALL check_open( 30 )
[2967]	354	#endif
[1327]	355	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	356	ELSE
[1327]	357	CALL check_open( 106+av*10 )
[493]	358	ENDIF
[1]	359
	360	!
[1745]	361	!-- For parallel netcdf output the time axis must be limited. Return, if this
	362	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	363	!-- the given end time by the length of the given output interval.
	364	IF ( netcdf_data_format > 4 ) THEN
	365	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	366	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3046]	367	simulated_time, '&because the maximum ', &
[1745]	368	'number of output time levels is ', &
	369	'exceeded.'
	370	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	371	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	372	RETURN
	373	ENDIF
	374	ENDIF
	375
	376	!
[1031]	377	!-- Update the netCDF time axis
[1308]	378	!-- In case of parallel output, this is only done by PE0 to increase the
	379	!-- performance.
[1]	380	#if defined( __netcdf )
[1308]	381	do3d_time_count(av) = do3d_time_count(av) + 1
	382	IF ( myid == 0 ) THEN
[1327]	383	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	384	(/ time_since_reference_point /), &
	385	start = (/ do3d_time_count(av) /), &
	386	count = (/ 1 /) )
[1783]	387	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	388	ENDIF
	389	#endif
	390
	391	!
	392	!-- Loop over all variables to be written.
[3554]	393	ivar = 1
[1]	394
[3554]	395	DO WHILE ( do3d(av,ivar)(1:1) /= ' ' )
[2007]	396
[1]	397	!
[2007]	398	!-- Temporary solution to account for data output within the new urban
	399	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	400	!-- Store the array chosen on the temporary array.
[3554]	401	trimvar = TRIM( do3d(av,ivar) )
[2011]	402	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	403	trimvar = 'usm_output'
	404	resorted = .TRUE.
	405	nzb_do = nzub
	406	nzt_do = nzut
	407	ELSE
	408	resorted = .FALSE.
	409	nzb_do = nzb
	410	nzt_do = nz_do3d
	411	ENDIF
[1551]	412	!
[1980]	413	!-- Set flag to steer output of radiation, land-surface, or user-defined
	414	!-- quantities
	415	found = .FALSE.
	416	!
[1551]	417	!-- Allocate a temporary array with the desired output dimensions.
[2512]	418	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	419	!
	420	!-- Before each output, set array local_pf to fill value
	421	local_pf = fill_value
	422	!
	423	!-- Set masking flag for topography for not resorted arrays
	424	flag_nr = 0
[1551]	425
[2007]	426	SELECT CASE ( trimvar )
[1]	427
	428	CASE ( 'e' )
	429	IF ( av == 0 ) THEN
	430	to_be_resorted => e
	431	ELSE
[3004]	432	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	433	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	434	e_av = REAL( fill_value, KIND = wp )
	435	ENDIF
[1]	436	to_be_resorted => e_av
	437	ENDIF
	438
[3421]	439	CASE ( 'thetal' )
[771]	440	IF ( av == 0 ) THEN
	441	to_be_resorted => pt
	442	ELSE
[3004]	443	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	444	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	445	lpt_av = REAL( fill_value, KIND = wp )
	446	ENDIF
[771]	447	to_be_resorted => lpt_av
	448	ENDIF
	449
[1]	450	CASE ( 'p' )
	451	IF ( av == 0 ) THEN
[727]	452	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	453	to_be_resorted => p
	454	ELSE
[3004]	455	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	456	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	457	p_av = REAL( fill_value, KIND = wp )
	458	ENDIF
[727]	459	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	460	to_be_resorted => p_av
	461	ENDIF
	462
	463	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	464	IF ( av == 0 ) THEN
[1359]	465	IF ( simulated_time >= particle_advection_start ) THEN
	466	tend = prt_count
	467	ELSE
	468	tend = 0.0_wp
	469	ENDIF
[2512]	470	DO i = nxl, nxr
	471	DO j = nys, nyn
[1551]	472	DO k = nzb_do, nzt_do
[1]	473	local_pf(i,j,k) = tend(k,j,i)
	474	ENDDO
	475	ENDDO
	476	ENDDO
	477	resorted = .TRUE.
	478	ELSE
[3004]	479	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	480	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	481	pc_av = REAL( fill_value, KIND = wp )
	482	ENDIF
[1]	483	to_be_resorted => pc_av
	484	ENDIF
	485
[1359]	486	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	487	IF ( av == 0 ) THEN
[1359]	488	IF ( simulated_time >= particle_advection_start ) THEN
	489	DO i = nxl, nxr
	490	DO j = nys, nyn
[1551]	491	DO k = nzb_do, nzt_do
[1359]	492	number_of_particles = prt_count(k,j,i)
	493	IF (number_of_particles <= 0) CYCLE
	494	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	495	s_r2 = 0.0_wp
	496	s_r3 = 0.0_wp
	497	DO n = 1, number_of_particles
	498	IF ( particles(n)%particle_mask ) THEN
	499	s_r2 = s_r2 + particles(n)%radius*2 &
	500	particles(n)%weight_factor
	501	s_r3 = s_r3 + particles(n)%radius*3 &
	502	particles(n)%weight_factor
	503	ENDIF
	504	ENDDO
	505	IF ( s_r2 > 0.0_wp ) THEN
	506	mean_r = s_r3 / s_r2
	507	ELSE
	508	mean_r = 0.0_wp
	509	ENDIF
	510	tend(k,j,i) = mean_r
[1]	511	ENDDO
	512	ENDDO
	513	ENDDO
[1359]	514	ELSE
	515	tend = 0.0_wp
	516	ENDIF
[2512]	517	DO i = nxl, nxr
	518	DO j = nys, nyn
[1551]	519	DO k = nzb_do, nzt_do
[1]	520	local_pf(i,j,k) = tend(k,j,i)
	521	ENDDO
	522	ENDDO
	523	ENDDO
	524	resorted = .TRUE.
	525	ELSE
[3004]	526	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	527	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	528	pr_av = REAL( fill_value, KIND = wp )
	529	ENDIF
[1]	530	to_be_resorted => pr_av
	531	ENDIF
	532
[3421]	533	CASE ( 'theta' )
[1]	534	IF ( av == 0 ) THEN
[3274]	535	IF ( .NOT. bulk_cloud_model ) THEN
[1]	536	to_be_resorted => pt
	537	ELSE
[2512]	538	DO i = nxl, nxr
	539	DO j = nys, nyn
[1551]	540	DO k = nzb_do, nzt_do
[3274]	541	local_pf(i,j,k) = pt(k,j,i) + lv_d_cp * &
	542	d_exner(k) * &
[1]	543	ql(k,j,i)
	544	ENDDO
	545	ENDDO
	546	ENDDO
	547	resorted = .TRUE.
	548	ENDIF
	549	ELSE
[3004]	550	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	551	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	552	pt_av = REAL( fill_value, KIND = wp )
	553	ENDIF
[1]	554	to_be_resorted => pt_av
	555	ENDIF
	556
	557	CASE ( 'q' )
	558	IF ( av == 0 ) THEN
	559	to_be_resorted => q
	560	ELSE
[3004]	561	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	562	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	563	q_av = REAL( fill_value, KIND = wp )
	564	ENDIF
[1]	565	to_be_resorted => q_av
	566	ENDIF
[691]	567
[1053]	568	CASE ( 'ql' )
	569	IF ( av == 0 ) THEN
[1115]	570	to_be_resorted => ql
[1053]	571	ELSE
[3004]	572	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	573	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	574	ql_av = REAL( fill_value, KIND = wp )
	575	ENDIF
[1115]	576	to_be_resorted => ql_av
[1053]	577	ENDIF
	578
[1]	579	CASE ( 'ql_c' )
	580	IF ( av == 0 ) THEN
	581	to_be_resorted => ql_c
	582	ELSE
[3004]	583	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	584	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	585	ql_c_av = REAL( fill_value, KIND = wp )
	586	ENDIF
[1]	587	to_be_resorted => ql_c_av
	588	ENDIF
	589
	590	CASE ( 'ql_v' )
	591	IF ( av == 0 ) THEN
	592	to_be_resorted => ql_v
	593	ELSE
[3004]	594	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	595	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	596	ql_v_av = REAL( fill_value, KIND = wp )
	597	ENDIF
[1]	598	to_be_resorted => ql_v_av
	599	ENDIF
	600
	601	CASE ( 'ql_vp' )
	602	IF ( av == 0 ) THEN
[1359]	603	IF ( simulated_time >= particle_advection_start ) THEN
	604	DO i = nxl, nxr
	605	DO j = nys, nyn
[1551]	606	DO k = nzb_do, nzt_do
[1359]	607	number_of_particles = prt_count(k,j,i)
	608	IF (number_of_particles <= 0) CYCLE
	609	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	610	DO n = 1, number_of_particles
	611	IF ( particles(n)%particle_mask ) THEN
	612	tend(k,j,i) = tend(k,j,i) + &
	613	particles(n)%weight_factor / &
	614	prt_count(k,j,i)
	615	ENDIF
	616	ENDDO
[1007]	617	ENDDO
	618	ENDDO
	619	ENDDO
[1359]	620	ELSE
	621	tend = 0.0_wp
	622	ENDIF
[2512]	623	DO i = nxl, nxr
	624	DO j = nys, nyn
[1551]	625	DO k = nzb_do, nzt_do
[1007]	626	local_pf(i,j,k) = tend(k,j,i)
	627	ENDDO
	628	ENDDO
	629	ENDDO
	630	resorted = .TRUE.
[1]	631	ELSE
[3004]	632	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	633	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	634	ql_vp_av = REAL( fill_value, KIND = wp )
	635	ENDIF
[1]	636	to_be_resorted => ql_vp_av
	637	ENDIF
	638
	639	CASE ( 'qv' )
	640	IF ( av == 0 ) THEN
[2512]	641	DO i = nxl, nxr
	642	DO j = nys, nyn
[1551]	643	DO k = nzb_do, nzt_do
[1]	644	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	645	ENDDO
	646	ENDDO
	647	ENDDO
	648	resorted = .TRUE.
	649	ELSE
[3004]	650	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	651	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	652	qv_av = REAL( fill_value, KIND = wp )
	653	ENDIF
[1]	654	to_be_resorted => qv_av
	655	ENDIF
	656
	657	CASE ( 's' )
	658	IF ( av == 0 ) THEN
[1960]	659	to_be_resorted => s
[1]	660	ELSE
[3004]	661	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	662	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	663	s_av = REAL( fill_value, KIND = wp )
	664	ENDIF
[355]	665	to_be_resorted => s_av
[1]	666	ENDIF
[691]	667
[1]	668	CASE ( 'u' )
[2696]	669	flag_nr = 1
[1]	670	IF ( av == 0 ) THEN
	671	to_be_resorted => u
	672	ELSE
[3004]	673	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	674	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	675	u_av = REAL( fill_value, KIND = wp )
	676	ENDIF
[1]	677	to_be_resorted => u_av
	678	ENDIF
	679
	680	CASE ( 'v' )
[2696]	681	flag_nr = 2
[1]	682	IF ( av == 0 ) THEN
	683	to_be_resorted => v
	684	ELSE
[3004]	685	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	686	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	687	v_av = REAL( fill_value, KIND = wp )
	688	ENDIF
[1]	689	to_be_resorted => v_av
	690	ENDIF
	691
[3421]	692	CASE ( 'thetav' )
[1]	693	IF ( av == 0 ) THEN
	694	to_be_resorted => vpt
	695	ELSE
[3004]	696	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	697	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	698	vpt_av = REAL( fill_value, KIND = wp )
	699	ENDIF
[1]	700	to_be_resorted => vpt_av
	701	ENDIF
	702
	703	CASE ( 'w' )
[2696]	704	flag_nr = 3
[1]	705	IF ( av == 0 ) THEN
	706	to_be_resorted => w
	707	ELSE
[3004]	708	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	709	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	710	w_av = REAL( fill_value, KIND = wp )
	711	ENDIF
[1]	712	to_be_resorted => w_av
	713	ENDIF
[2007]	714	!
	715	!-- Block of urban surface model outputs
	716	CASE ( 'usm_output' )
[3554]	717	CALL usm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[2007]	718	nzb_do, nzt_do )
[1]	719
	720	CASE DEFAULT
[1972]	721
[1]	722	!
[3294]	723	!-- Quantities of other modules
[3274]	724	IF ( .NOT. found .AND. bulk_cloud_model ) THEN
[3554]	725	CALL bcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3274]	726	nzb_do, nzt_do )
	727	resorted = .TRUE.
	728	ENDIF
	729
[3294]	730	IF ( .NOT. found .AND. air_chemistry ) THEN
[3554]	731	CALL chem_data_output_3d( av, do3d(av,ivar), found, &
[3294]	732	local_pf, fill_value, nzb_do, nzt_do )
	733	resorted = .TRUE.
	734	ENDIF
	735
	736	IF ( .NOT. found .AND. gust_module_enabled ) THEN
[3554]	737	CALL gust_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	738	nzb_do, nzt_do )
	739	resorted = .TRUE.
	740	ENDIF
	741
[3274]	742	IF ( .NOT. found .AND. land_surface ) THEN
[1972]	743	!
	744	!-- For soil model quantities, it is required to re-allocate local_pf
	745	nzb_do = nzb_soil
	746	nzt_do = nzt_soil
	747
	748	DEALLOCATE ( local_pf )
[2512]	749	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	750	local_pf = fill_value
[1972]	751
[3554]	752	CALL lsm_data_output_3d( av, do3d(av,ivar), found, local_pf )
[1972]	753	resorted = .TRUE.
[1976]	754
	755	!
	756	!-- If no soil model variable was found, re-allocate local_pf
	757	IF ( .NOT. found ) THEN
	758	nzb_do = nzb
	759	nzt_do = nz_do3d
	760
	761	DEALLOCATE ( local_pf )
[2512]	762	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	763	ENDIF
	764
[1972]	765	ENDIF
	766
[3294]	767	IF ( .NOT. found .AND. ocean_mode ) THEN
[3554]	768	CALL ocean_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	769	nzb_do, nzt_do )
[1976]	770	resorted = .TRUE.
	771	ENDIF
	772
[3294]	773	IF ( .NOT. found .AND. plant_canopy ) THEN
[3554]	774	CALL pcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	775	fill_value, nzb_do, nzt_do )
[2817]	776	resorted = .TRUE.
	777	ENDIF
	778
[3294]	779	IF ( .NOT. found .AND. radiation ) THEN
[3554]	780	CALL radiation_data_output_3d( av, do3d(av,ivar), found, &
[3294]	781	local_pf, nzb_do, nzt_do )
[2696]	782	resorted = .TRUE.
	783	ENDIF
	784
[3294]	785	IF ( .NOT. found ) THEN
[3554]	786	CALL tcm_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3294]	787	nzb_do, nzt_do )
[2209]	788	resorted = .TRUE.
	789	ENDIF
[3467]	790
	791	!
	792	!-- SALSA output
	793	IF ( .NOT. found .AND. salsa ) THEN
[3582]	794	CALL salsa_data_output_3d( av, do3d(av,ivar), found, local_pf, &
	795	nzb_do, nzt_do )
[3467]	796	resorted = .TRUE.
	797	ENDIF
[2209]	798
[3448]	799	IF ( .NOT. found .AND. biometeorology ) THEN
[3554]	800	CALL bio_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[3525]	801	nzb_do, nzt_do )
[3448]	802	ENDIF
	803
[2209]	804	!
[3294]	805	!-- User defined quantities
[1972]	806	IF ( .NOT. found ) THEN
[3554]	807	CALL user_data_output_3d( av, do3d(av,ivar), found, local_pf, &
[1972]	808	nzb_do, nzt_do )
	809	resorted = .TRUE.
	810	ENDIF
[1]	811
[254]	812	IF ( .NOT. found ) THEN
[1320]	813	message_string = 'no output available for: ' // &
[3554]	814	TRIM( do3d(av,ivar) )
[254]	815	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	816	ENDIF
	817
	818	END SELECT
	819
	820	!
	821	!-- Resort the array to be output, if not done above
	822	IF ( .NOT. resorted ) THEN
[2512]	823	DO i = nxl, nxr
	824	DO j = nys, nyn
[1551]	825	DO k = nzb_do, nzt_do
[2696]	826	local_pf(i,j,k) = MERGE( &
	827	to_be_resorted(k,j,i), &
	828	REAL( fill_value, KIND = wp ), &
	829	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	830	ENDDO
	831	ENDDO
	832	ENDDO
	833	ENDIF
	834
	835	!
[1327]	836	!-- Output of the 3D-array
	837	#if defined( __parallel )
	838	IF ( netcdf_data_format < 5 ) THEN
[1]	839	!
[1327]	840	!-- Non-parallel netCDF output. Data is output in parallel in
	841	!-- FORTRAN binary format here, and later collected into one file by
	842	!-- combine_plot_fields
	843	IF ( myid == 0 ) THEN
	844	WRITE ( 30 ) time_since_reference_point, &
	845	do3d_time_count(av), av
[1]	846	ENDIF
[1327]	847	DO i = 0, io_blocks-1
	848	IF ( i == io_group ) THEN
[2512]	849	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	850	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	851	ENDIF
[1972]	852
[1327]	853	CALL MPI_BARRIER( comm2d, ierr )
[1972]	854
[1327]	855	ENDDO
[559]	856
[1327]	857	ELSE
[646]	858	#if defined( __netcdf )
[493]	859	!
[1327]	860	!-- Parallel output in netCDF4/HDF5 format.
[2512]	861	! IF ( nxr == nx .AND. nyn /= ny ) THEN
[3554]	862	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	863	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	864	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	865	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	866	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
[3554]	867	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	868	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	869	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	870	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	871	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
[3554]	872	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[2512]	873	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	874	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	875	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	876	! ELSE
[3554]	877	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	878	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	879	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	880	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	881	! ENDIF
[1783]	882	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	883	#endif
[1327]	884	ENDIF
[1]	885	#else
	886	#if defined( __netcdf )
[3554]	887	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,ivar), &
[1551]	888	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	889	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	890	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	891	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	892	#endif
	893	#endif
	894
[3554]	895	ivar = ivar + 1
[1]	896
	897	!
[1551]	898	!-- Deallocate temporary array
	899	DEALLOCATE ( local_pf )
[1]	900
[1551]	901	ENDDO
[1]	902
[1318]	903	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	904
	905	END SUBROUTINE data_output_3d

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