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source: palm/trunk/SOURCE/data_output_3d.f90 @ 3045

Last change on this file since 3045 was 3045, checked in by Giersch, 6 years ago
Code adjusted according to coding standards, renamed namelists, error messages revised until PA0347, output CASE 108 disabled
Property svn:keywords set to `Id`
File size: 32.9 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 3045 2018-05-28 07:55:41Z Giersch $
[3045]	27	! Error message revised
	28	!
	29	! 3014 2018-05-09 08:42:38Z maronga
[3014]	30	! Added nzb_do and nzt_do for some modules for 3d output
	31	!
	32	! 3004 2018-04-27 12:33:25Z Giersch
[3004]	33	! Allocation checks implemented (averaged data will be assigned to fill values
	34	! if no allocation happened so far)
	35	!
	36	! 2967 2018-04-13 11:22:08Z raasch
[2967]	37	! bugfix: missing parallel cpp-directives added
	38	!
	39	! 2817 2018-02-19 16:32:21Z knoop
[2817]	40	! Preliminary gust module interface implemented
	41	!
	42	! 2766 2018-01-22 17:17:47Z kanani
[2766]	43	! Removed preprocessor directive __chem
	44	!
	45	! 2756 2018-01-16 18:11:14Z suehring
[2756]	46	! Fill values for 3D output of chemical species introduced.
	47	!
	48	! 2746 2018-01-15 12:06:04Z suehring
[2746]	49	! Move flag plant canopy to modules
	50	!
	51	! 2718 2018-01-02 08:49:38Z maronga
[2716]	52	! Corrected "Former revisions" section
	53	!
	54	! 2696 2017-12-14 17:12:51Z kanani
	55	! Change in file header (GPL part)
[2696]	56	! Implementation of turbulence_closure_mod (TG)
	57	! Implementation of chemistry module (FK)
	58	! Set fill values at topography grid points or e.g. non-natural-type surface
	59	! in case of LSM output (MS)
	60	!
	61	! 2512 2017-10-04 08:26:59Z raasch
[2512]	62	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	63	! no output of ghost layer data
	64	!
	65	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	66	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	67	! includes two more prognostic equations for cloud drop concentration (nc)
	68	! and cloud water content (qc).
	69	!
	70	! 2233 2017-05-30 18:08:54Z suehring
[1552]	71	!
[2233]	72	! 2232 2017-05-30 17:47:52Z suehring
	73	! Adjustments to new topography concept
	74	!
[2210]	75	! 2209 2017-04-19 09:34:46Z kanani
	76	! Added plant canopy model output
	77	!
[2032]	78	! 2031 2016-10-21 15:11:58Z knoop
	79	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	80	!
[2012]	81	! 2011 2016-09-19 17:29:57Z kanani
	82	! Flag urban_surface is now defined in module control_parameters,
	83	! changed prefix for urban surface model output to "usm_",
	84	! introduced control parameter varnamelength for LEN of trimvar.
	85	!
[2008]	86	! 2007 2016-08-24 15:47:17Z kanani
	87	! Added support for new urban surface model (temporary modifications of
	88	! SELECT CASE ( ) necessary, see variable trimvar)
	89	!
[2001]	90	! 2000 2016-08-20 18:09:15Z knoop
	91	! Forced header and separation lines into 80 columns
	92	!
[1981]	93	! 1980 2016-07-29 15:51:57Z suehring
	94	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	95	! to .F.
	96	!
[1977]	97	! 1976 2016-07-27 13:28:04Z maronga
	98	! Output of radiation quantities is now done directly in the respective module
	99	!
[1973]	100	! 1972 2016-07-26 07:52:02Z maronga
	101	! Output of land surface quantities is now done directly in the respective module.
	102	! Unnecessary directive __parallel removed.
	103	!
[1961]	104	! 1960 2016-07-12 16:34:24Z suehring
	105	! Scalar surface flux added
	106	!
[1851]	107	! 1849 2016-04-08 11:33:18Z hoffmann
	108	! prr moved to arrays_3d
	109	!
[1823]	110	! 1822 2016-04-07 07:49:42Z hoffmann
	111	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	112	!
[1809]	113	! 1808 2016-04-05 19:44:00Z raasch
	114	! test output removed
	115	!
[1784]	116	! 1783 2016-03-06 18:36:17Z raasch
	117	! name change of netcdf routines and module + related changes
	118	!
[1746]	119	! 1745 2016-02-05 13:06:51Z gronemeier
	120	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	121	!
[1692]	122	! 1691 2015-10-26 16:17:44Z maronga
	123	! Added output of radiative heating rates for RRTMG
	124	!
[1683]	125	! 1682 2015-10-07 23:56:08Z knoop
	126	! Code annotations made doxygen readable
	127	!
[1586]	128	! 1585 2015-04-30 07:05:52Z maronga
	129	! Added support for RRTMG
	130	!
[1552]	131	! 1551 2015-03-03 14:18:16Z maronga
[1551]	132	! Added suppport for land surface model and radiation model output. In the course
	133	! of this action, the limits for vertical loops have been changed (from nzb and
	134	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	135	! Moreover, a new vertical grid zs was introduced.
[1329]	136	!
[1360]	137	! 1359 2014-04-11 17:15:14Z hoffmann
	138	! New particle structure integrated.
	139	!
[1354]	140	! 1353 2014-04-08 15:21:23Z heinze
	141	! REAL constants provided with KIND-attribute
	142	!
[1329]	143	! 1327 2014-03-21 11:00:16Z raasch
	144	! parts concerning avs output removed,
	145	! -netcdf output queries
	146	!
[1321]	147	! 1320 2014-03-20 08:40:49Z raasch
[1320]	148	! ONLY-attribute added to USE-statements,
	149	! kind-parameters added to all INTEGER and REAL declaration statements,
	150	! kinds are defined in new module kinds,
	151	! old module precision_kind is removed,
	152	! revision history before 2012 removed,
	153	! comment fields (!:) to be used for variable explanations added to
	154	! all variable declaration statements
[674]	155	!
[1319]	156	! 1318 2014-03-17 13:35:16Z raasch
	157	! barrier argument removed from cpu_log,
	158	! module interfaces removed
	159	!
[1309]	160	! 1308 2014-03-13 14:58:42Z fricke
	161	! Check, if the limit of the time dimension is exceeded for parallel output
	162	! To increase the performance for parallel output, the following is done:
	163	! - Update of time axis is only done by PE0
	164	!
[1245]	165	! 1244 2013-10-31 08:16:56Z raasch
	166	! Bugfix for index bounds in case of 3d-parallel output
	167	!
[1116]	168	! 1115 2013-03-26 18:16:16Z hoffmann
	169	! ql is calculated by calc_liquid_water_content
	170	!
[1107]	171	! 1106 2013-03-04 05:31:38Z raasch
	172	! array_kind renamed precision_kind
	173	!
[1077]	174	! 1076 2012-12-05 08:30:18Z hoffmann
	175	! Bugfix in output of ql
	176	!
[1054]	177	! 1053 2012-11-13 17:11:03Z hoffmann
	178	! +nr, qr, prr, qc and averaged quantities
	179	!
[1037]	180	! 1036 2012-10-22 13:43:42Z raasch
	181	! code put under GPL (PALM 3.9)
	182	!
[1035]	183	! 1031 2012-10-19 14:35:30Z raasch
	184	! netCDF4 without parallel file support implemented
	185	!
[1008]	186	! 1007 2012-09-19 14:30:36Z franke
	187	! Bugfix: missing calculation of ql_vp added
	188	!
[1]	189	! Revision 1.1 1997/09/03 06:29:36 raasch
	190	! Initial revision
	191	!
	192	!
	193	! Description:
	194	! ------------
[1682]	195	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	196	!------------------------------------------------------------------------------!
[1682]	197	SUBROUTINE data_output_3d( av )
	198
[1]	199
[1320]	200	USE arrays_3d, &
[2292]	201	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	202	sa, tend, u, v, vpt, w
[1320]	203
[1]	204	USE averaging
[1320]	205
[2696]	206	USE chemistry_model_mod, &
	207	ONLY: chem_data_output_3d
	208
[1320]	209	USE cloud_parameters, &
[1849]	210	ONLY: l_d_cp, pt_d_t
[1320]	211
	212	USE control_parameters, &
[2696]	213	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	214	io_blocks, io_group, land_surface, message_string, &
[2746]	215	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	216	psolver, simulated_time, time_since_reference_point, &
	217	urban_surface, varnamelength
[1320]	218
	219	USE cpulog, &
	220	ONLY: log_point, cpu_log
[2817]	221
	222	USE gust_mod, &
	223	ONLY: gust_data_output_3d, gust_module_enabled
[1320]	224
	225	USE indices, &
[3004]	226	ONLY: nbgp, nx, nxl, nxlg, nxr, nxrg, ny, nyn, nyng, nys, nysg, nzb, &
	227	nzt, wall_flags_0
[1320]	228
	229	USE kinds
	230
[1551]	231	USE land_surface_model_mod, &
[2232]	232	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	233
[1783]	234	#if defined( __netcdf )
	235	USE NETCDF
	236	#endif
	237
	238	USE netcdf_interface, &
[2696]	239	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	240	netcdf_data_format, netcdf_handle_error
[1320]	241
	242	USE particle_attributes, &
[1359]	243	ONLY: grid_particles, number_of_particles, particles, &
	244	particle_advection_start, prt_count
[1320]	245
[1]	246	USE pegrid
	247
[2209]	248	USE plant_canopy_model_mod, &
[2746]	249	ONLY: pcm_data_output_3d
[2209]	250
[1585]	251	USE radiation_model_mod, &
[2696]	252	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	253
[2696]	254	USE turbulence_closure_mod, &
	255	ONLY: tcm_data_output_3d
	256
[2007]	257	USE urban_surface_mod, &
[2696]	258	ONLY: usm_data_output_3d
[1585]	259
[2007]	260
[1]	261	IMPLICIT NONE
	262
[1682]	263	INTEGER(iwp) :: av !<
[2696]	264	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	265	INTEGER(iwp) :: i !<
	266	INTEGER(iwp) :: if !<
	267	INTEGER(iwp) :: j !<
	268	INTEGER(iwp) :: k !<
	269	INTEGER(iwp) :: n !<
	270	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	271	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	272
[1682]	273	LOGICAL :: found !<
	274	LOGICAL :: resorted !<
[1]	275
[1682]	276	REAL(wp) :: mean_r !<
	277	REAL(wp) :: s_r2 !<
	278	REAL(wp) :: s_r3 !<
[1]	279
[1682]	280	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	281
[1682]	282	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	283
[2011]	284	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	285
[1]	286	!
	287	!-- Return, if nothing to output
	288	IF ( do3d_no(av) == 0 ) RETURN
	289
	290	CALL cpu_log (log_point(14),'data_output_3d','start')
	291
	292	!
	293	!-- Open output file.
[2512]	294	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	295	!-- own file and writes the data of its subdomain in binary format. After the
	296	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	297	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	298	IF ( netcdf_data_format < 5 ) THEN
[2967]	299	#if defined( __parallel )
[1327]	300	CALL check_open( 30 )
[2967]	301	#endif
[1327]	302	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	303	ELSE
[1327]	304	CALL check_open( 106+av*10 )
[493]	305	ENDIF
[1]	306
	307	!
[1745]	308	!-- For parallel netcdf output the time axis must be limited. Return, if this
	309	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	310	!-- the given end time by the length of the given output interval.
	311	IF ( netcdf_data_format > 4 ) THEN
	312	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	313	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
[3045]	314	simulated_time, ' because the maximum ', &
[1745]	315	'number of output time levels is ', &
	316	'exceeded.'
	317	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	318	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	319	RETURN
	320	ENDIF
	321	ENDIF
	322
	323	!
[1031]	324	!-- Update the netCDF time axis
[1308]	325	!-- In case of parallel output, this is only done by PE0 to increase the
	326	!-- performance.
[1]	327	#if defined( __netcdf )
[1308]	328	do3d_time_count(av) = do3d_time_count(av) + 1
	329	IF ( myid == 0 ) THEN
[1327]	330	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	331	(/ time_since_reference_point /), &
	332	start = (/ do3d_time_count(av) /), &
	333	count = (/ 1 /) )
[1783]	334	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	335	ENDIF
	336	#endif
	337
	338	!
	339	!-- Loop over all variables to be written.
	340	if = 1
	341
	342	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	343
[1]	344	!
[2007]	345	!-- Temporary solution to account for data output within the new urban
	346	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	347	!-- Store the array chosen on the temporary array.
[2007]	348	trimvar = TRIM( do3d(av,if) )
[2011]	349	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	350	trimvar = 'usm_output'
	351	resorted = .TRUE.
	352	nzb_do = nzub
	353	nzt_do = nzut
	354	ELSE
	355	resorted = .FALSE.
	356	nzb_do = nzb
	357	nzt_do = nz_do3d
	358	ENDIF
[1551]	359	!
[1980]	360	!-- Set flag to steer output of radiation, land-surface, or user-defined
	361	!-- quantities
	362	found = .FALSE.
	363	!
[1551]	364	!-- Allocate a temporary array with the desired output dimensions.
[2512]	365	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	366	!
	367	!-- Before each output, set array local_pf to fill value
	368	local_pf = fill_value
	369	!
	370	!-- Set masking flag for topography for not resorted arrays
	371	flag_nr = 0
[1551]	372
[2007]	373	SELECT CASE ( trimvar )
[1]	374
	375	CASE ( 'e' )
	376	IF ( av == 0 ) THEN
	377	to_be_resorted => e
	378	ELSE
[3004]	379	IF ( .NOT. ALLOCATED( e_av ) ) THEN
	380	ALLOCATE( e_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	381	e_av = REAL( fill_value, KIND = wp )
	382	ENDIF
[1]	383	to_be_resorted => e_av
	384	ENDIF
	385
[771]	386	CASE ( 'lpt' )
	387	IF ( av == 0 ) THEN
	388	to_be_resorted => pt
	389	ELSE
[3004]	390	IF ( .NOT. ALLOCATED( lpt_av ) ) THEN
	391	ALLOCATE( lpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	392	lpt_av = REAL( fill_value, KIND = wp )
	393	ENDIF
[771]	394	to_be_resorted => lpt_av
	395	ENDIF
	396
[2292]	397	CASE ( 'nc' )
	398	IF ( av == 0 ) THEN
	399	to_be_resorted => nc
	400	ELSE
[3004]	401	IF ( .NOT. ALLOCATED( nc_av ) ) THEN
	402	ALLOCATE( nc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	403	nc_av = REAL( fill_value, KIND = wp )
	404	ENDIF
[2292]	405	to_be_resorted => nc_av
	406	ENDIF
	407
[1053]	408	CASE ( 'nr' )
	409	IF ( av == 0 ) THEN
	410	to_be_resorted => nr
	411	ELSE
[3004]	412	IF ( .NOT. ALLOCATED( nr_av ) ) THEN
	413	ALLOCATE( nr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	414	nr_av = REAL( fill_value, KIND = wp )
	415	ENDIF
[1053]	416	to_be_resorted => nr_av
	417	ENDIF
	418
[1]	419	CASE ( 'p' )
	420	IF ( av == 0 ) THEN
[727]	421	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	422	to_be_resorted => p
	423	ELSE
[3004]	424	IF ( .NOT. ALLOCATED( p_av ) ) THEN
	425	ALLOCATE( p_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	426	p_av = REAL( fill_value, KIND = wp )
	427	ENDIF
[727]	428	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	429	to_be_resorted => p_av
	430	ENDIF
	431
	432	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	433	IF ( av == 0 ) THEN
[1359]	434	IF ( simulated_time >= particle_advection_start ) THEN
	435	tend = prt_count
	436	ELSE
	437	tend = 0.0_wp
	438	ENDIF
[2512]	439	DO i = nxl, nxr
	440	DO j = nys, nyn
[1551]	441	DO k = nzb_do, nzt_do
[1]	442	local_pf(i,j,k) = tend(k,j,i)
	443	ENDDO
	444	ENDDO
	445	ENDDO
	446	resorted = .TRUE.
	447	ELSE
[3004]	448	IF ( .NOT. ALLOCATED( pc_av ) ) THEN
	449	ALLOCATE( pc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	450	pc_av = REAL( fill_value, KIND = wp )
	451	ENDIF
[1]	452	to_be_resorted => pc_av
	453	ENDIF
	454
[1359]	455	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	456	IF ( av == 0 ) THEN
[1359]	457	IF ( simulated_time >= particle_advection_start ) THEN
	458	DO i = nxl, nxr
	459	DO j = nys, nyn
[1551]	460	DO k = nzb_do, nzt_do
[1359]	461	number_of_particles = prt_count(k,j,i)
	462	IF (number_of_particles <= 0) CYCLE
	463	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	464	s_r2 = 0.0_wp
	465	s_r3 = 0.0_wp
	466	DO n = 1, number_of_particles
	467	IF ( particles(n)%particle_mask ) THEN
	468	s_r2 = s_r2 + particles(n)%radius*2 &
	469	particles(n)%weight_factor
	470	s_r3 = s_r3 + particles(n)%radius*3 &
	471	particles(n)%weight_factor
	472	ENDIF
	473	ENDDO
	474	IF ( s_r2 > 0.0_wp ) THEN
	475	mean_r = s_r3 / s_r2
	476	ELSE
	477	mean_r = 0.0_wp
	478	ENDIF
	479	tend(k,j,i) = mean_r
[1]	480	ENDDO
	481	ENDDO
	482	ENDDO
[1359]	483	ELSE
	484	tend = 0.0_wp
	485	ENDIF
[2512]	486	DO i = nxl, nxr
	487	DO j = nys, nyn
[1551]	488	DO k = nzb_do, nzt_do
[1]	489	local_pf(i,j,k) = tend(k,j,i)
	490	ENDDO
	491	ENDDO
	492	ENDDO
	493	resorted = .TRUE.
	494	ELSE
[3004]	495	IF ( .NOT. ALLOCATED( pr_av ) ) THEN
	496	ALLOCATE( pr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	497	pr_av = REAL( fill_value, KIND = wp )
	498	ENDIF
[1]	499	to_be_resorted => pr_av
	500	ENDIF
	501
[1053]	502	CASE ( 'prr' )
	503	IF ( av == 0 ) THEN
[2512]	504	DO i = nxl, nxr
	505	DO j = nys, nyn
[1822]	506	DO k = nzb_do, nzt_do
[1053]	507	local_pf(i,j,k) = prr(k,j,i)
	508	ENDDO
	509	ENDDO
	510	ENDDO
	511	ELSE
[3004]	512	IF ( .NOT. ALLOCATED( prr_av ) ) THEN
	513	ALLOCATE( prr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	514	prr_av = REAL( fill_value, KIND = wp )
	515	ENDIF
[2512]	516	DO i = nxl, nxr
	517	DO j = nys, nyn
[1822]	518	DO k = nzb_do, nzt_do
[1053]	519	local_pf(i,j,k) = prr_av(k,j,i)
	520	ENDDO
	521	ENDDO
	522	ENDDO
	523	ENDIF
	524	resorted = .TRUE.
	525
[1]	526	CASE ( 'pt' )
	527	IF ( av == 0 ) THEN
	528	IF ( .NOT. cloud_physics ) THEN
	529	to_be_resorted => pt
	530	ELSE
[2512]	531	DO i = nxl, nxr
	532	DO j = nys, nyn
[1551]	533	DO k = nzb_do, nzt_do
[1320]	534	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	535	pt_d_t(k) * &
[1]	536	ql(k,j,i)
	537	ENDDO
	538	ENDDO
	539	ENDDO
	540	resorted = .TRUE.
	541	ENDIF
	542	ELSE
[3004]	543	IF ( .NOT. ALLOCATED( pt_av ) ) THEN
	544	ALLOCATE( pt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	545	pt_av = REAL( fill_value, KIND = wp )
	546	ENDIF
[1]	547	to_be_resorted => pt_av
	548	ENDIF
	549
	550	CASE ( 'q' )
	551	IF ( av == 0 ) THEN
	552	to_be_resorted => q
	553	ELSE
[3004]	554	IF ( .NOT. ALLOCATED( q_av ) ) THEN
	555	ALLOCATE( q_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	556	q_av = REAL( fill_value, KIND = wp )
	557	ENDIF
[1]	558	to_be_resorted => q_av
	559	ENDIF
[691]	560
[1053]	561	CASE ( 'qc' )
[1]	562	IF ( av == 0 ) THEN
[1115]	563	to_be_resorted => qc
[1]	564	ELSE
[3004]	565	IF ( .NOT. ALLOCATED( qc_av ) ) THEN
	566	ALLOCATE( qc_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	567	qc_av = REAL( fill_value, KIND = wp )
	568	ENDIF
[1115]	569	to_be_resorted => qc_av
[1]	570	ENDIF
	571
[1053]	572	CASE ( 'ql' )
	573	IF ( av == 0 ) THEN
[1115]	574	to_be_resorted => ql
[1053]	575	ELSE
[3004]	576	IF ( .NOT. ALLOCATED( ql_av ) ) THEN
	577	ALLOCATE( ql_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	578	ql_av = REAL( fill_value, KIND = wp )
	579	ENDIF
[1115]	580	to_be_resorted => ql_av
[1053]	581	ENDIF
	582
[1]	583	CASE ( 'ql_c' )
	584	IF ( av == 0 ) THEN
	585	to_be_resorted => ql_c
	586	ELSE
[3004]	587	IF ( .NOT. ALLOCATED( ql_c_av ) ) THEN
	588	ALLOCATE( ql_c_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	589	ql_c_av = REAL( fill_value, KIND = wp )
	590	ENDIF
[1]	591	to_be_resorted => ql_c_av
	592	ENDIF
	593
	594	CASE ( 'ql_v' )
	595	IF ( av == 0 ) THEN
	596	to_be_resorted => ql_v
	597	ELSE
[3004]	598	IF ( .NOT. ALLOCATED( ql_v_av ) ) THEN
	599	ALLOCATE( ql_v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	600	ql_v_av = REAL( fill_value, KIND = wp )
	601	ENDIF
[1]	602	to_be_resorted => ql_v_av
	603	ENDIF
	604
	605	CASE ( 'ql_vp' )
	606	IF ( av == 0 ) THEN
[1359]	607	IF ( simulated_time >= particle_advection_start ) THEN
	608	DO i = nxl, nxr
	609	DO j = nys, nyn
[1551]	610	DO k = nzb_do, nzt_do
[1359]	611	number_of_particles = prt_count(k,j,i)
	612	IF (number_of_particles <= 0) CYCLE
	613	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	614	DO n = 1, number_of_particles
	615	IF ( particles(n)%particle_mask ) THEN
	616	tend(k,j,i) = tend(k,j,i) + &
	617	particles(n)%weight_factor / &
	618	prt_count(k,j,i)
	619	ENDIF
	620	ENDDO
[1007]	621	ENDDO
	622	ENDDO
	623	ENDDO
[1359]	624	ELSE
	625	tend = 0.0_wp
	626	ENDIF
[2512]	627	DO i = nxl, nxr
	628	DO j = nys, nyn
[1551]	629	DO k = nzb_do, nzt_do
[1007]	630	local_pf(i,j,k) = tend(k,j,i)
	631	ENDDO
	632	ENDDO
	633	ENDDO
	634	resorted = .TRUE.
[1]	635	ELSE
[3004]	636	IF ( .NOT. ALLOCATED( ql_vp_av ) ) THEN
	637	ALLOCATE( ql_vp_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	638	ql_vp_av = REAL( fill_value, KIND = wp )
	639	ENDIF
[1]	640	to_be_resorted => ql_vp_av
	641	ENDIF
	642
[1053]	643	CASE ( 'qr' )
	644	IF ( av == 0 ) THEN
	645	to_be_resorted => qr
	646	ELSE
[3004]	647	IF ( .NOT. ALLOCATED( qr_av ) ) THEN
	648	ALLOCATE( qr_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	649	qr_av = REAL( fill_value, KIND = wp )
	650	ENDIF
[1053]	651	to_be_resorted => qr_av
	652	ENDIF
	653
[1]	654	CASE ( 'qv' )
	655	IF ( av == 0 ) THEN
[2512]	656	DO i = nxl, nxr
	657	DO j = nys, nyn
[1551]	658	DO k = nzb_do, nzt_do
[1]	659	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	660	ENDDO
	661	ENDDO
	662	ENDDO
	663	resorted = .TRUE.
	664	ELSE
[3004]	665	IF ( .NOT. ALLOCATED( qv_av ) ) THEN
	666	ALLOCATE( qv_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	667	qv_av = REAL( fill_value, KIND = wp )
	668	ENDIF
[1]	669	to_be_resorted => qv_av
	670	ENDIF
	671
[2031]	672	CASE ( 'rho_ocean' )
[96]	673	IF ( av == 0 ) THEN
[2031]	674	to_be_resorted => rho_ocean
[96]	675	ELSE
[3004]	676	IF ( .NOT. ALLOCATED( rho_ocean_av ) ) THEN
	677	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	678	u_av = REAL( fill_value, KIND = wp )
	679	ENDIF
[2031]	680	to_be_resorted => rho_ocean_av
[96]	681	ENDIF
[691]	682
[1]	683	CASE ( 's' )
	684	IF ( av == 0 ) THEN
[1960]	685	to_be_resorted => s
[1]	686	ELSE
[3004]	687	IF ( .NOT. ALLOCATED( s_av ) ) THEN
	688	ALLOCATE( s_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	689	s_av = REAL( fill_value, KIND = wp )
	690	ENDIF
[355]	691	to_be_resorted => s_av
[1]	692	ENDIF
[691]	693
[96]	694	CASE ( 'sa' )
	695	IF ( av == 0 ) THEN
	696	to_be_resorted => sa
	697	ELSE
[3004]	698	IF ( .NOT. ALLOCATED( sa_av ) ) THEN
	699	ALLOCATE( sa_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	700	sa_av = REAL( fill_value, KIND = wp )
	701	ENDIF
[96]	702	to_be_resorted => sa_av
	703	ENDIF
[691]	704
[1]	705	CASE ( 'u' )
[2696]	706	flag_nr = 1
[1]	707	IF ( av == 0 ) THEN
	708	to_be_resorted => u
	709	ELSE
[3004]	710	IF ( .NOT. ALLOCATED( u_av ) ) THEN
	711	ALLOCATE( u_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	712	u_av = REAL( fill_value, KIND = wp )
	713	ENDIF
[1]	714	to_be_resorted => u_av
	715	ENDIF
	716
	717	CASE ( 'v' )
[2696]	718	flag_nr = 2
[1]	719	IF ( av == 0 ) THEN
	720	to_be_resorted => v
	721	ELSE
[3004]	722	IF ( .NOT. ALLOCATED( v_av ) ) THEN
	723	ALLOCATE( v_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	724	v_av = REAL( fill_value, KIND = wp )
	725	ENDIF
[1]	726	to_be_resorted => v_av
	727	ENDIF
	728
	729	CASE ( 'vpt' )
	730	IF ( av == 0 ) THEN
	731	to_be_resorted => vpt
	732	ELSE
[3004]	733	IF ( .NOT. ALLOCATED( vpt_av ) ) THEN
	734	ALLOCATE( vpt_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	735	vpt_av = REAL( fill_value, KIND = wp )
	736	ENDIF
[1]	737	to_be_resorted => vpt_av
	738	ENDIF
	739
	740	CASE ( 'w' )
[2696]	741	flag_nr = 3
[1]	742	IF ( av == 0 ) THEN
	743	to_be_resorted => w
	744	ELSE
[3004]	745	IF ( .NOT. ALLOCATED( w_av ) ) THEN
	746	ALLOCATE( w_av(nzb:nzt+1,nysg:nyng,nxlg:nxrg) )
	747	w_av = REAL( fill_value, KIND = wp )
	748	ENDIF
[1]	749	to_be_resorted => w_av
	750	ENDIF
[2007]	751	!
	752	!-- Block of urban surface model outputs
	753	CASE ( 'usm_output' )
	754	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	755	nzb_do, nzt_do )
[1]	756
	757	CASE DEFAULT
[1972]	758
[1]	759	!
[1972]	760	!-- Land surface quantity
	761	IF ( land_surface ) THEN
	762	!
	763	!-- For soil model quantities, it is required to re-allocate local_pf
	764	nzb_do = nzb_soil
	765	nzt_do = nzt_soil
	766
	767	DEALLOCATE ( local_pf )
[2512]	768	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	769	local_pf = fill_value
[1972]	770
	771	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	772	resorted = .TRUE.
[1976]	773
	774	!
	775	!-- If no soil model variable was found, re-allocate local_pf
	776	IF ( .NOT. found ) THEN
	777	nzb_do = nzb
	778	nzt_do = nz_do3d
	779
	780	DEALLOCATE ( local_pf )
[2512]	781	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	782	ENDIF
	783
[1972]	784	ENDIF
	785
[2696]	786	IF ( .NOT. found ) THEN
[3014]	787	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	788	nzb_do, nzt_do )
[2696]	789	resorted = .TRUE.
	790	ENDIF
	791
[1972]	792	!
[1976]	793	!-- Radiation quantity
	794	IF ( .NOT. found .AND. radiation ) THEN
	795	CALL radiation_data_output_3d( av, do3d(av,if), found, &
[3014]	796	local_pf, nzb_do, nzt_do )
[1976]	797	resorted = .TRUE.
	798	ENDIF
	799
	800	!
[2817]	801	!-- Gust module quantities
	802	IF ( .NOT. found .AND. gust_module_enabled ) THEN
	803	CALL gust_data_output_3d( av, do3d(av,if), found, local_pf, &
	804	nzb_do, nzt_do )
	805	resorted = .TRUE.
	806	ENDIF
	807
	808	!
[2696]	809	!-- Chemistry model output
	810	IF ( .NOT. found .AND. air_chemistry ) THEN
	811	CALL chem_data_output_3d( av, do3d(av,if), found, &
[3014]	812	local_pf, fill_value, nzb_do, nzt_do )
[2696]	813	resorted = .TRUE.
	814	ENDIF
	815
	816	!
[2209]	817	!-- Plant canopy model output
	818	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	819	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
[3014]	820	fill_value, nzb_do, nzt_do )
[2209]	821	resorted = .TRUE.
	822	ENDIF
	823
	824	!
[1]	825	!-- User defined quantity
[1972]	826	IF ( .NOT. found ) THEN
	827	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	828	nzb_do, nzt_do )
	829	resorted = .TRUE.
	830	ENDIF
[1]	831
[254]	832	IF ( .NOT. found ) THEN
[1320]	833	message_string = 'no output available for: ' // &
[274]	834	TRIM( do3d(av,if) )
[254]	835	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	836	ENDIF
	837
	838	END SELECT
	839
	840	!
	841	!-- Resort the array to be output, if not done above
	842	IF ( .NOT. resorted ) THEN
[2512]	843	DO i = nxl, nxr
	844	DO j = nys, nyn
[1551]	845	DO k = nzb_do, nzt_do
[2696]	846	local_pf(i,j,k) = MERGE( &
	847	to_be_resorted(k,j,i), &
	848	REAL( fill_value, KIND = wp ), &
	849	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	850	ENDDO
	851	ENDDO
	852	ENDDO
	853	ENDIF
	854
	855	!
[1327]	856	!-- Output of the 3D-array
	857	#if defined( __parallel )
	858	IF ( netcdf_data_format < 5 ) THEN
[1]	859	!
[1327]	860	!-- Non-parallel netCDF output. Data is output in parallel in
	861	!-- FORTRAN binary format here, and later collected into one file by
	862	!-- combine_plot_fields
	863	IF ( myid == 0 ) THEN
	864	WRITE ( 30 ) time_since_reference_point, &
	865	do3d_time_count(av), av
[1]	866	ENDIF
[1327]	867	DO i = 0, io_blocks-1
	868	IF ( i == io_group ) THEN
[2512]	869	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	870	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	871	ENDIF
[1972]	872
[1327]	873	CALL MPI_BARRIER( comm2d, ierr )
[1972]	874
[1327]	875	ENDDO
[559]	876
[1327]	877	ELSE
[646]	878	#if defined( __netcdf )
[493]	879	!
[1327]	880	!-- Parallel output in netCDF4/HDF5 format.
[2512]	881	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	882	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	883	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	884	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	885	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	886	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	887	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	888	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	889	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	890	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	891	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	892	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	893	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	894	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	895	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	896	! ELSE
[1327]	897	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	898	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	899	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	900	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	901	! ENDIF
[1783]	902	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	903	#endif
[1327]	904	ENDIF
[1]	905	#else
	906	#if defined( __netcdf )
[1327]	907	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	908	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	909	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	910	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	911	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	912	#endif
	913	#endif
	914
	915	if = if + 1
	916
	917	!
[1551]	918	!-- Deallocate temporary array
	919	DEALLOCATE ( local_pf )
[1]	920
[1551]	921	ENDDO
[1]	922
[1318]	923	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	924
	925	!
	926	!-- Formats.
[1320]	927	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	928	'label = ',A,A)
	929
	930	END SUBROUTINE data_output_3d

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