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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2766

Last change on this file since 2766 was 2766, checked in by kanani, 6 years ago
Removal of chem directive, plus minor changes
Property svn:keywords set to `Id`
File size: 27.2 KB

Rev	Line
[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2766 2018-01-22 17:17:47Z kanani $
[2766]	27	! Removed preprocessor directive __chem
	28	!
	29	! 2756 2018-01-16 18:11:14Z suehring
[2756]	30	! Fill values for 3D output of chemical species introduced.
	31	!
	32	! 2746 2018-01-15 12:06:04Z suehring
[2746]	33	! Move flag plant canopy to modules
	34	!
	35	! 2718 2018-01-02 08:49:38Z maronga
[2716]	36	! Corrected "Former revisions" section
	37	!
	38	! 2696 2017-12-14 17:12:51Z kanani
	39	! Change in file header (GPL part)
[2696]	40	! Implementation of turbulence_closure_mod (TG)
	41	! Implementation of chemistry module (FK)
	42	! Set fill values at topography grid points or e.g. non-natural-type surface
	43	! in case of LSM output (MS)
	44	!
	45	! 2512 2017-10-04 08:26:59Z raasch
[2512]	46	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	47	! no output of ghost layer data
	48	!
	49	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	50	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	51	! includes two more prognostic equations for cloud drop concentration (nc)
	52	! and cloud water content (qc).
	53	!
	54	! 2233 2017-05-30 18:08:54Z suehring
[1552]	55	!
[2233]	56	! 2232 2017-05-30 17:47:52Z suehring
	57	! Adjustments to new topography concept
	58	!
[2210]	59	! 2209 2017-04-19 09:34:46Z kanani
	60	! Added plant canopy model output
	61	!
[2032]	62	! 2031 2016-10-21 15:11:58Z knoop
	63	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	64	!
[2012]	65	! 2011 2016-09-19 17:29:57Z kanani
	66	! Flag urban_surface is now defined in module control_parameters,
	67	! changed prefix for urban surface model output to "usm_",
	68	! introduced control parameter varnamelength for LEN of trimvar.
	69	!
[2008]	70	! 2007 2016-08-24 15:47:17Z kanani
	71	! Added support for new urban surface model (temporary modifications of
	72	! SELECT CASE ( ) necessary, see variable trimvar)
	73	!
[2001]	74	! 2000 2016-08-20 18:09:15Z knoop
	75	! Forced header and separation lines into 80 columns
	76	!
[1981]	77	! 1980 2016-07-29 15:51:57Z suehring
	78	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	79	! to .F.
	80	!
[1977]	81	! 1976 2016-07-27 13:28:04Z maronga
	82	! Output of radiation quantities is now done directly in the respective module
	83	!
[1973]	84	! 1972 2016-07-26 07:52:02Z maronga
	85	! Output of land surface quantities is now done directly in the respective module.
	86	! Unnecessary directive __parallel removed.
	87	!
[1961]	88	! 1960 2016-07-12 16:34:24Z suehring
	89	! Scalar surface flux added
	90	!
[1851]	91	! 1849 2016-04-08 11:33:18Z hoffmann
	92	! prr moved to arrays_3d
	93	!
[1823]	94	! 1822 2016-04-07 07:49:42Z hoffmann
	95	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	96	!
[1809]	97	! 1808 2016-04-05 19:44:00Z raasch
	98	! test output removed
	99	!
[1784]	100	! 1783 2016-03-06 18:36:17Z raasch
	101	! name change of netcdf routines and module + related changes
	102	!
[1746]	103	! 1745 2016-02-05 13:06:51Z gronemeier
	104	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	105	!
[1692]	106	! 1691 2015-10-26 16:17:44Z maronga
	107	! Added output of radiative heating rates for RRTMG
	108	!
[1683]	109	! 1682 2015-10-07 23:56:08Z knoop
	110	! Code annotations made doxygen readable
	111	!
[1586]	112	! 1585 2015-04-30 07:05:52Z maronga
	113	! Added support for RRTMG
	114	!
[1552]	115	! 1551 2015-03-03 14:18:16Z maronga
[1551]	116	! Added suppport for land surface model and radiation model output. In the course
	117	! of this action, the limits for vertical loops have been changed (from nzb and
	118	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	119	! Moreover, a new vertical grid zs was introduced.
[1329]	120	!
[1360]	121	! 1359 2014-04-11 17:15:14Z hoffmann
	122	! New particle structure integrated.
	123	!
[1354]	124	! 1353 2014-04-08 15:21:23Z heinze
	125	! REAL constants provided with KIND-attribute
	126	!
[1329]	127	! 1327 2014-03-21 11:00:16Z raasch
	128	! parts concerning avs output removed,
	129	! -netcdf output queries
	130	!
[1321]	131	! 1320 2014-03-20 08:40:49Z raasch
[1320]	132	! ONLY-attribute added to USE-statements,
	133	! kind-parameters added to all INTEGER and REAL declaration statements,
	134	! kinds are defined in new module kinds,
	135	! old module precision_kind is removed,
	136	! revision history before 2012 removed,
	137	! comment fields (!:) to be used for variable explanations added to
	138	! all variable declaration statements
[674]	139	!
[1319]	140	! 1318 2014-03-17 13:35:16Z raasch
	141	! barrier argument removed from cpu_log,
	142	! module interfaces removed
	143	!
[1309]	144	! 1308 2014-03-13 14:58:42Z fricke
	145	! Check, if the limit of the time dimension is exceeded for parallel output
	146	! To increase the performance for parallel output, the following is done:
	147	! - Update of time axis is only done by PE0
	148	!
[1245]	149	! 1244 2013-10-31 08:16:56Z raasch
	150	! Bugfix for index bounds in case of 3d-parallel output
	151	!
[1116]	152	! 1115 2013-03-26 18:16:16Z hoffmann
	153	! ql is calculated by calc_liquid_water_content
	154	!
[1107]	155	! 1106 2013-03-04 05:31:38Z raasch
	156	! array_kind renamed precision_kind
	157	!
[1077]	158	! 1076 2012-12-05 08:30:18Z hoffmann
	159	! Bugfix in output of ql
	160	!
[1054]	161	! 1053 2012-11-13 17:11:03Z hoffmann
	162	! +nr, qr, prr, qc and averaged quantities
	163	!
[1037]	164	! 1036 2012-10-22 13:43:42Z raasch
	165	! code put under GPL (PALM 3.9)
	166	!
[1035]	167	! 1031 2012-10-19 14:35:30Z raasch
	168	! netCDF4 without parallel file support implemented
	169	!
[1008]	170	! 1007 2012-09-19 14:30:36Z franke
	171	! Bugfix: missing calculation of ql_vp added
	172	!
[1]	173	! Revision 1.1 1997/09/03 06:29:36 raasch
	174	! Initial revision
	175	!
	176	!
	177	! Description:
	178	! ------------
[1682]	179	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	180	!------------------------------------------------------------------------------!
[1682]	181	SUBROUTINE data_output_3d( av )
	182
[1]	183
[1320]	184	USE arrays_3d, &
[2292]	185	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	186	sa, tend, u, v, vpt, w
[1320]	187
[1]	188	USE averaging
[1320]	189
[2696]	190	USE chemistry_model_mod, &
	191	ONLY: chem_data_output_3d
	192
[1320]	193	USE cloud_parameters, &
[1849]	194	ONLY: l_d_cp, pt_d_t
[1320]	195
	196	USE control_parameters, &
[2696]	197	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	198	io_blocks, io_group, land_surface, message_string, &
[2746]	199	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	200	psolver, simulated_time, time_since_reference_point, &
	201	urban_surface, varnamelength
[1320]	202
	203	USE cpulog, &
	204	ONLY: log_point, cpu_log
	205
	206	USE indices, &
[2696]	207	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
[1320]	208
	209	USE kinds
	210
[1551]	211	USE land_surface_model_mod, &
[2232]	212	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	213
[1783]	214	#if defined( __netcdf )
	215	USE NETCDF
	216	#endif
	217
	218	USE netcdf_interface, &
[2696]	219	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	220	netcdf_data_format, netcdf_handle_error
[1320]	221
	222	USE particle_attributes, &
[1359]	223	ONLY: grid_particles, number_of_particles, particles, &
	224	particle_advection_start, prt_count
[1320]	225
[1]	226	USE pegrid
	227
[2209]	228	USE plant_canopy_model_mod, &
[2746]	229	ONLY: pcm_data_output_3d
[2209]	230
[1585]	231	USE radiation_model_mod, &
[2696]	232	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	233
[2696]	234	USE turbulence_closure_mod, &
	235	ONLY: tcm_data_output_3d
	236
[2007]	237	USE urban_surface_mod, &
[2696]	238	ONLY: usm_data_output_3d
[1585]	239
[2007]	240
[1]	241	IMPLICIT NONE
	242
[1682]	243	INTEGER(iwp) :: av !<
[2696]	244	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	245	INTEGER(iwp) :: i !<
	246	INTEGER(iwp) :: if !<
	247	INTEGER(iwp) :: j !<
	248	INTEGER(iwp) :: k !<
	249	INTEGER(iwp) :: n !<
	250	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	251	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	252
[1682]	253	LOGICAL :: found !<
	254	LOGICAL :: resorted !<
[1]	255
[1682]	256	REAL(wp) :: mean_r !<
	257	REAL(wp) :: s_r2 !<
	258	REAL(wp) :: s_r3 !<
[1]	259
[1682]	260	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	261
[1682]	262	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	263
[2011]	264	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	265
[1]	266	!
	267	!-- Return, if nothing to output
	268	IF ( do3d_no(av) == 0 ) RETURN
	269
	270	CALL cpu_log (log_point(14),'data_output_3d','start')
	271
	272	!
	273	!-- Open output file.
[2512]	274	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	275	!-- own file and writes the data of its subdomain in binary format. After the
	276	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	277	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	278	IF ( netcdf_data_format < 5 ) THEN
	279	CALL check_open( 30 )
	280	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	281	ELSE
[1327]	282	CALL check_open( 106+av*10 )
[493]	283	ENDIF
[1]	284
	285	!
[1745]	286	!-- For parallel netcdf output the time axis must be limited. Return, if this
	287	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	288	!-- the given end time by the length of the given output interval.
	289	IF ( netcdf_data_format > 4 ) THEN
	290	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	291	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	292	simulated_time, '&because the maximum ', &
	293	'number of output time levels is ', &
	294	'exceeded.'
	295	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	296	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	297	RETURN
	298	ENDIF
	299	ENDIF
	300
	301	!
[1031]	302	!-- Update the netCDF time axis
[1308]	303	!-- In case of parallel output, this is only done by PE0 to increase the
	304	!-- performance.
[1]	305	#if defined( __netcdf )
[1308]	306	do3d_time_count(av) = do3d_time_count(av) + 1
	307	IF ( myid == 0 ) THEN
[1327]	308	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	309	(/ time_since_reference_point /), &
	310	start = (/ do3d_time_count(av) /), &
	311	count = (/ 1 /) )
[1783]	312	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	313	ENDIF
	314	#endif
	315
	316	!
	317	!-- Loop over all variables to be written.
	318	if = 1
	319
	320	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	321
[1]	322	!
[2007]	323	!-- Temporary solution to account for data output within the new urban
	324	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	325	!-- Store the array chosen on the temporary array.
[2007]	326	trimvar = TRIM( do3d(av,if) )
[2011]	327	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	328	trimvar = 'usm_output'
	329	resorted = .TRUE.
	330	nzb_do = nzub
	331	nzt_do = nzut
	332	ELSE
	333	resorted = .FALSE.
	334	nzb_do = nzb
	335	nzt_do = nz_do3d
	336	ENDIF
[1551]	337	!
[1980]	338	!-- Set flag to steer output of radiation, land-surface, or user-defined
	339	!-- quantities
	340	found = .FALSE.
	341	!
[1551]	342	!-- Allocate a temporary array with the desired output dimensions.
[2512]	343	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	344	!
	345	!-- Before each output, set array local_pf to fill value
	346	local_pf = fill_value
	347	!
	348	!-- Set masking flag for topography for not resorted arrays
	349	flag_nr = 0
[1551]	350
[2007]	351	SELECT CASE ( trimvar )
[1]	352
	353	CASE ( 'e' )
	354	IF ( av == 0 ) THEN
	355	to_be_resorted => e
	356	ELSE
	357	to_be_resorted => e_av
	358	ENDIF
	359
[771]	360	CASE ( 'lpt' )
	361	IF ( av == 0 ) THEN
	362	to_be_resorted => pt
	363	ELSE
	364	to_be_resorted => lpt_av
	365	ENDIF
	366
[2292]	367	CASE ( 'nc' )
	368	IF ( av == 0 ) THEN
	369	to_be_resorted => nc
	370	ELSE
	371	to_be_resorted => nc_av
	372	ENDIF
	373
[1053]	374	CASE ( 'nr' )
	375	IF ( av == 0 ) THEN
	376	to_be_resorted => nr
	377	ELSE
	378	to_be_resorted => nr_av
	379	ENDIF
	380
[1]	381	CASE ( 'p' )
	382	IF ( av == 0 ) THEN
[727]	383	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	384	to_be_resorted => p
	385	ELSE
[727]	386	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	387	to_be_resorted => p_av
	388	ENDIF
	389
	390	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	391	IF ( av == 0 ) THEN
[1359]	392	IF ( simulated_time >= particle_advection_start ) THEN
	393	tend = prt_count
	394	ELSE
	395	tend = 0.0_wp
	396	ENDIF
[2512]	397	DO i = nxl, nxr
	398	DO j = nys, nyn
[1551]	399	DO k = nzb_do, nzt_do
[1]	400	local_pf(i,j,k) = tend(k,j,i)
	401	ENDDO
	402	ENDDO
	403	ENDDO
	404	resorted = .TRUE.
	405	ELSE
	406	to_be_resorted => pc_av
	407	ENDIF
	408
[1359]	409	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	410	IF ( av == 0 ) THEN
[1359]	411	IF ( simulated_time >= particle_advection_start ) THEN
	412	DO i = nxl, nxr
	413	DO j = nys, nyn
[1551]	414	DO k = nzb_do, nzt_do
[1359]	415	number_of_particles = prt_count(k,j,i)
	416	IF (number_of_particles <= 0) CYCLE
	417	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	418	s_r2 = 0.0_wp
	419	s_r3 = 0.0_wp
	420	DO n = 1, number_of_particles
	421	IF ( particles(n)%particle_mask ) THEN
	422	s_r2 = s_r2 + particles(n)%radius*2 &
	423	particles(n)%weight_factor
	424	s_r3 = s_r3 + particles(n)%radius*3 &
	425	particles(n)%weight_factor
	426	ENDIF
	427	ENDDO
	428	IF ( s_r2 > 0.0_wp ) THEN
	429	mean_r = s_r3 / s_r2
	430	ELSE
	431	mean_r = 0.0_wp
	432	ENDIF
	433	tend(k,j,i) = mean_r
[1]	434	ENDDO
	435	ENDDO
	436	ENDDO
[1359]	437	ELSE
	438	tend = 0.0_wp
	439	ENDIF
[2512]	440	DO i = nxl, nxr
	441	DO j = nys, nyn
[1551]	442	DO k = nzb_do, nzt_do
[1]	443	local_pf(i,j,k) = tend(k,j,i)
	444	ENDDO
	445	ENDDO
	446	ENDDO
	447	resorted = .TRUE.
	448	ELSE
	449	to_be_resorted => pr_av
	450	ENDIF
	451
[1053]	452	CASE ( 'prr' )
	453	IF ( av == 0 ) THEN
[2512]	454	DO i = nxl, nxr
	455	DO j = nys, nyn
[1822]	456	DO k = nzb_do, nzt_do
[1053]	457	local_pf(i,j,k) = prr(k,j,i)
	458	ENDDO
	459	ENDDO
	460	ENDDO
	461	ELSE
[2512]	462	DO i = nxl, nxr
	463	DO j = nys, nyn
[1822]	464	DO k = nzb_do, nzt_do
[1053]	465	local_pf(i,j,k) = prr_av(k,j,i)
	466	ENDDO
	467	ENDDO
	468	ENDDO
	469	ENDIF
	470	resorted = .TRUE.
	471
[1]	472	CASE ( 'pt' )
	473	IF ( av == 0 ) THEN
	474	IF ( .NOT. cloud_physics ) THEN
	475	to_be_resorted => pt
	476	ELSE
[2512]	477	DO i = nxl, nxr
	478	DO j = nys, nyn
[1551]	479	DO k = nzb_do, nzt_do
[1320]	480	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	481	pt_d_t(k) * &
[1]	482	ql(k,j,i)
	483	ENDDO
	484	ENDDO
	485	ENDDO
	486	resorted = .TRUE.
	487	ENDIF
	488	ELSE
	489	to_be_resorted => pt_av
	490	ENDIF
	491
	492	CASE ( 'q' )
	493	IF ( av == 0 ) THEN
	494	to_be_resorted => q
	495	ELSE
	496	to_be_resorted => q_av
	497	ENDIF
[691]	498
[1053]	499	CASE ( 'qc' )
[1]	500	IF ( av == 0 ) THEN
[1115]	501	to_be_resorted => qc
[1]	502	ELSE
[1115]	503	to_be_resorted => qc_av
[1]	504	ENDIF
	505
[1053]	506	CASE ( 'ql' )
	507	IF ( av == 0 ) THEN
[1115]	508	to_be_resorted => ql
[1053]	509	ELSE
[1115]	510	to_be_resorted => ql_av
[1053]	511	ENDIF
	512
[1]	513	CASE ( 'ql_c' )
	514	IF ( av == 0 ) THEN
	515	to_be_resorted => ql_c
	516	ELSE
	517	to_be_resorted => ql_c_av
	518	ENDIF
	519
	520	CASE ( 'ql_v' )
	521	IF ( av == 0 ) THEN
	522	to_be_resorted => ql_v
	523	ELSE
	524	to_be_resorted => ql_v_av
	525	ENDIF
	526
	527	CASE ( 'ql_vp' )
	528	IF ( av == 0 ) THEN
[1359]	529	IF ( simulated_time >= particle_advection_start ) THEN
	530	DO i = nxl, nxr
	531	DO j = nys, nyn
[1551]	532	DO k = nzb_do, nzt_do
[1359]	533	number_of_particles = prt_count(k,j,i)
	534	IF (number_of_particles <= 0) CYCLE
	535	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	536	DO n = 1, number_of_particles
	537	IF ( particles(n)%particle_mask ) THEN
	538	tend(k,j,i) = tend(k,j,i) + &
	539	particles(n)%weight_factor / &
	540	prt_count(k,j,i)
	541	ENDIF
	542	ENDDO
[1007]	543	ENDDO
	544	ENDDO
	545	ENDDO
[1359]	546	ELSE
	547	tend = 0.0_wp
	548	ENDIF
[2512]	549	DO i = nxl, nxr
	550	DO j = nys, nyn
[1551]	551	DO k = nzb_do, nzt_do
[1007]	552	local_pf(i,j,k) = tend(k,j,i)
	553	ENDDO
	554	ENDDO
	555	ENDDO
	556	resorted = .TRUE.
[1]	557	ELSE
	558	to_be_resorted => ql_vp_av
	559	ENDIF
	560
[1053]	561	CASE ( 'qr' )
	562	IF ( av == 0 ) THEN
	563	to_be_resorted => qr
	564	ELSE
	565	to_be_resorted => qr_av
	566	ENDIF
	567
[1]	568	CASE ( 'qv' )
	569	IF ( av == 0 ) THEN
[2512]	570	DO i = nxl, nxr
	571	DO j = nys, nyn
[1551]	572	DO k = nzb_do, nzt_do
[1]	573	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	574	ENDDO
	575	ENDDO
	576	ENDDO
	577	resorted = .TRUE.
	578	ELSE
	579	to_be_resorted => qv_av
	580	ENDIF
	581
[2031]	582	CASE ( 'rho_ocean' )
[96]	583	IF ( av == 0 ) THEN
[2031]	584	to_be_resorted => rho_ocean
[96]	585	ELSE
[2031]	586	to_be_resorted => rho_ocean_av
[96]	587	ENDIF
[691]	588
[1]	589	CASE ( 's' )
	590	IF ( av == 0 ) THEN
[1960]	591	to_be_resorted => s
[1]	592	ELSE
[355]	593	to_be_resorted => s_av
[1]	594	ENDIF
[691]	595
[96]	596	CASE ( 'sa' )
	597	IF ( av == 0 ) THEN
	598	to_be_resorted => sa
	599	ELSE
	600	to_be_resorted => sa_av
	601	ENDIF
[691]	602
[1]	603	CASE ( 'u' )
[2696]	604	flag_nr = 1
[1]	605	IF ( av == 0 ) THEN
	606	to_be_resorted => u
	607	ELSE
	608	to_be_resorted => u_av
	609	ENDIF
	610
	611	CASE ( 'v' )
[2696]	612	flag_nr = 2
[1]	613	IF ( av == 0 ) THEN
	614	to_be_resorted => v
	615	ELSE
	616	to_be_resorted => v_av
	617	ENDIF
	618
	619	CASE ( 'vpt' )
	620	IF ( av == 0 ) THEN
	621	to_be_resorted => vpt
	622	ELSE
	623	to_be_resorted => vpt_av
	624	ENDIF
	625
	626	CASE ( 'w' )
[2696]	627	flag_nr = 3
[1]	628	IF ( av == 0 ) THEN
	629	to_be_resorted => w
	630	ELSE
	631	to_be_resorted => w_av
	632	ENDIF
[2007]	633	!
	634	!-- Block of urban surface model outputs
	635	CASE ( 'usm_output' )
	636	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	637	nzb_do, nzt_do )
[1]	638
	639	CASE DEFAULT
[1972]	640
[1]	641	!
[1972]	642	!-- Land surface quantity
	643	IF ( land_surface ) THEN
	644	!
	645	!-- For soil model quantities, it is required to re-allocate local_pf
	646	nzb_do = nzb_soil
	647	nzt_do = nzt_soil
	648
	649	DEALLOCATE ( local_pf )
[2512]	650	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	651	local_pf = fill_value
[1972]	652
	653	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	654	resorted = .TRUE.
[1976]	655
	656	!
	657	!-- If no soil model variable was found, re-allocate local_pf
	658	IF ( .NOT. found ) THEN
	659	nzb_do = nzb
	660	nzt_do = nz_do3d
	661
	662	DEALLOCATE ( local_pf )
[2512]	663	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	664	ENDIF
	665
[1972]	666	ENDIF
	667
[2696]	668	IF ( .NOT. found ) THEN
	669	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
	670	resorted = .TRUE.
	671	ENDIF
	672
[1972]	673	!
[1976]	674	!-- Radiation quantity
	675	IF ( .NOT. found .AND. radiation ) THEN
	676	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	677	local_pf )
	678	resorted = .TRUE.
	679	ENDIF
	680
	681	!
[2696]	682	!-- Chemistry model output
	683	IF ( .NOT. found .AND. air_chemistry ) THEN
	684	CALL chem_data_output_3d( av, do3d(av,if), found, &
[2756]	685	local_pf, fill_value )
[2696]	686	resorted = .TRUE.
	687	ENDIF
	688
	689	!
[2209]	690	!-- Plant canopy model output
	691	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	692	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	693	fill_value )
[2209]	694	resorted = .TRUE.
	695	ENDIF
	696
	697	!
[1]	698	!-- User defined quantity
[1972]	699	IF ( .NOT. found ) THEN
	700	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	701	nzb_do, nzt_do )
	702	resorted = .TRUE.
	703	ENDIF
[1]	704
[254]	705	IF ( .NOT. found ) THEN
[1320]	706	message_string = 'no output available for: ' // &
[274]	707	TRIM( do3d(av,if) )
[254]	708	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	709	ENDIF
	710
	711	END SELECT
	712
	713	!
	714	!-- Resort the array to be output, if not done above
	715	IF ( .NOT. resorted ) THEN
[2512]	716	DO i = nxl, nxr
	717	DO j = nys, nyn
[1551]	718	DO k = nzb_do, nzt_do
[2696]	719	local_pf(i,j,k) = MERGE( &
	720	to_be_resorted(k,j,i), &
	721	REAL( fill_value, KIND = wp ), &
	722	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	723	ENDDO
	724	ENDDO
	725	ENDDO
	726	ENDIF
	727
	728	!
[1327]	729	!-- Output of the 3D-array
	730	#if defined( __parallel )
	731	IF ( netcdf_data_format < 5 ) THEN
[1]	732	!
[1327]	733	!-- Non-parallel netCDF output. Data is output in parallel in
	734	!-- FORTRAN binary format here, and later collected into one file by
	735	!-- combine_plot_fields
	736	IF ( myid == 0 ) THEN
	737	WRITE ( 30 ) time_since_reference_point, &
	738	do3d_time_count(av), av
[1]	739	ENDIF
[1327]	740	DO i = 0, io_blocks-1
	741	IF ( i == io_group ) THEN
[2512]	742	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	743	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	744	ENDIF
[1972]	745
[1327]	746	CALL MPI_BARRIER( comm2d, ierr )
[1972]	747
[1327]	748	ENDDO
[559]	749
[1327]	750	ELSE
[646]	751	#if defined( __netcdf )
[493]	752	!
[1327]	753	!-- Parallel output in netCDF4/HDF5 format.
[2512]	754	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	755	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	756	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	757	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	758	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	759	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	760	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	761	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	762	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	763	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	764	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	765	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	766	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	767	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	768	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	769	! ELSE
[1327]	770	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	771	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	772	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	773	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	774	! ENDIF
[1783]	775	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	776	#endif
[1327]	777	ENDIF
[1]	778	#else
	779	#if defined( __netcdf )
[1327]	780	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	781	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	782	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	783	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	784	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	785	#endif
	786	#endif
	787
	788	if = if + 1
	789
	790	!
[1551]	791	!-- Deallocate temporary array
	792	DEALLOCATE ( local_pf )
[1]	793
[1551]	794	ENDDO
[1]	795
[1318]	796	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	797
	798	!
	799	!-- Formats.
[1320]	800	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	801	'label = ',A,A)
	802
	803	END SUBROUTINE data_output_3d

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