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source: palm/trunk/SOURCE/data_output_3d.f90 @ 2756

Last change on this file since 2756 was 2756, checked in by suehring, 6 years ago
Fill values for 3D data output of chemical species introduced
Property svn:keywords set to `Id`
File size: 27.1 KB

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[1682]	1	!> @file data_output_3d.f90
[2000]	2	!------------------------------------------------------------------------------!
[2696]	3	! This file is part of the PALM model system.
[1036]	4	!
[2000]	5	! PALM is free software: you can redistribute it and/or modify it under the
	6	! terms of the GNU General Public License as published by the Free Software
	7	! Foundation, either version 3 of the License, or (at your option) any later
	8	! version.
[1036]	9	!
	10	! PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	11	! WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	12	! A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	13	!
	14	! You should have received a copy of the GNU General Public License along with
	15	! PALM. If not, see <http://www.gnu.org/licenses/>.
	16	!
[2718]	17	! Copyright 1997-2018 Leibniz Universitaet Hannover
[2000]	18	!------------------------------------------------------------------------------!
[1036]	19	!
[254]	20	! Current revisions:
[1106]	21	! ------------------
[1961]	22	!
[2233]	23	!
[1552]	24	! Former revisions:
	25	! -----------------
	26	! $Id: data_output_3d.f90 2756 2018-01-16 18:11:14Z suehring $
[2756]	27	! Fill values for 3D output of chemical species introduced.
	28	!
	29	! 2746 2018-01-15 12:06:04Z suehring
[2746]	30	! Move flag plant canopy to modules
	31	!
	32	! 2718 2018-01-02 08:49:38Z maronga
[2716]	33	! Corrected "Former revisions" section
	34	!
	35	! 2696 2017-12-14 17:12:51Z kanani
	36	! Change in file header (GPL part)
[2696]	37	! Implementation of turbulence_closure_mod (TG)
	38	! Implementation of chemistry module (FK)
	39	! Set fill values at topography grid points or e.g. non-natural-type surface
	40	! in case of LSM output (MS)
	41	!
	42	! 2512 2017-10-04 08:26:59Z raasch
[2512]	43	! upper bounds of 3d output changed from nx+1,ny+1 to nx,ny
	44	! no output of ghost layer data
	45	!
	46	! 2292 2017-06-20 09:51:42Z schwenkel
[2292]	47	! Implementation of new microphysic scheme: cloud_scheme = 'morrison'
	48	! includes two more prognostic equations for cloud drop concentration (nc)
	49	! and cloud water content (qc).
	50	!
	51	! 2233 2017-05-30 18:08:54Z suehring
[1552]	52	!
[2233]	53	! 2232 2017-05-30 17:47:52Z suehring
	54	! Adjustments to new topography concept
	55	!
[2210]	56	! 2209 2017-04-19 09:34:46Z kanani
	57	! Added plant canopy model output
	58	!
[2032]	59	! 2031 2016-10-21 15:11:58Z knoop
	60	! renamed variable rho to rho_ocean and rho_av to rho_ocean_av
	61	!
[2012]	62	! 2011 2016-09-19 17:29:57Z kanani
	63	! Flag urban_surface is now defined in module control_parameters,
	64	! changed prefix for urban surface model output to "usm_",
	65	! introduced control parameter varnamelength for LEN of trimvar.
	66	!
[2008]	67	! 2007 2016-08-24 15:47:17Z kanani
	68	! Added support for new urban surface model (temporary modifications of
	69	! SELECT CASE ( ) necessary, see variable trimvar)
	70	!
[2001]	71	! 2000 2016-08-20 18:09:15Z knoop
	72	! Forced header and separation lines into 80 columns
	73	!
[1981]	74	! 1980 2016-07-29 15:51:57Z suehring
	75	! Bugfix, in order to steer user-defined output, setting flag found explicitly
	76	! to .F.
	77	!
[1977]	78	! 1976 2016-07-27 13:28:04Z maronga
	79	! Output of radiation quantities is now done directly in the respective module
	80	!
[1973]	81	! 1972 2016-07-26 07:52:02Z maronga
	82	! Output of land surface quantities is now done directly in the respective module.
	83	! Unnecessary directive __parallel removed.
	84	!
[1961]	85	! 1960 2016-07-12 16:34:24Z suehring
	86	! Scalar surface flux added
	87	!
[1851]	88	! 1849 2016-04-08 11:33:18Z hoffmann
	89	! prr moved to arrays_3d
	90	!
[1823]	91	! 1822 2016-04-07 07:49:42Z hoffmann
	92	! prr vertical dimensions set to nzb_do to nzt_do. Unused variables deleted.
	93	!
[1809]	94	! 1808 2016-04-05 19:44:00Z raasch
	95	! test output removed
	96	!
[1784]	97	! 1783 2016-03-06 18:36:17Z raasch
	98	! name change of netcdf routines and module + related changes
	99	!
[1746]	100	! 1745 2016-02-05 13:06:51Z gronemeier
	101	! Bugfix: test if time axis limit exceeds moved to point after call of check_open
	102	!
[1692]	103	! 1691 2015-10-26 16:17:44Z maronga
	104	! Added output of radiative heating rates for RRTMG
	105	!
[1683]	106	! 1682 2015-10-07 23:56:08Z knoop
	107	! Code annotations made doxygen readable
	108	!
[1586]	109	! 1585 2015-04-30 07:05:52Z maronga
	110	! Added support for RRTMG
	111	!
[1552]	112	! 1551 2015-03-03 14:18:16Z maronga
[1551]	113	! Added suppport for land surface model and radiation model output. In the course
	114	! of this action, the limits for vertical loops have been changed (from nzb and
	115	! nzt+1 to nzb_do and nzt_do, respectively in order to allow soil model output).
	116	! Moreover, a new vertical grid zs was introduced.
[1329]	117	!
[1360]	118	! 1359 2014-04-11 17:15:14Z hoffmann
	119	! New particle structure integrated.
	120	!
[1354]	121	! 1353 2014-04-08 15:21:23Z heinze
	122	! REAL constants provided with KIND-attribute
	123	!
[1329]	124	! 1327 2014-03-21 11:00:16Z raasch
	125	! parts concerning avs output removed,
	126	! -netcdf output queries
	127	!
[1321]	128	! 1320 2014-03-20 08:40:49Z raasch
[1320]	129	! ONLY-attribute added to USE-statements,
	130	! kind-parameters added to all INTEGER and REAL declaration statements,
	131	! kinds are defined in new module kinds,
	132	! old module precision_kind is removed,
	133	! revision history before 2012 removed,
	134	! comment fields (!:) to be used for variable explanations added to
	135	! all variable declaration statements
[674]	136	!
[1319]	137	! 1318 2014-03-17 13:35:16Z raasch
	138	! barrier argument removed from cpu_log,
	139	! module interfaces removed
	140	!
[1309]	141	! 1308 2014-03-13 14:58:42Z fricke
	142	! Check, if the limit of the time dimension is exceeded for parallel output
	143	! To increase the performance for parallel output, the following is done:
	144	! - Update of time axis is only done by PE0
	145	!
[1245]	146	! 1244 2013-10-31 08:16:56Z raasch
	147	! Bugfix for index bounds in case of 3d-parallel output
	148	!
[1116]	149	! 1115 2013-03-26 18:16:16Z hoffmann
	150	! ql is calculated by calc_liquid_water_content
	151	!
[1107]	152	! 1106 2013-03-04 05:31:38Z raasch
	153	! array_kind renamed precision_kind
	154	!
[1077]	155	! 1076 2012-12-05 08:30:18Z hoffmann
	156	! Bugfix in output of ql
	157	!
[1054]	158	! 1053 2012-11-13 17:11:03Z hoffmann
	159	! +nr, qr, prr, qc and averaged quantities
	160	!
[1037]	161	! 1036 2012-10-22 13:43:42Z raasch
	162	! code put under GPL (PALM 3.9)
	163	!
[1035]	164	! 1031 2012-10-19 14:35:30Z raasch
	165	! netCDF4 without parallel file support implemented
	166	!
[1008]	167	! 1007 2012-09-19 14:30:36Z franke
	168	! Bugfix: missing calculation of ql_vp added
	169	!
[1]	170	! Revision 1.1 1997/09/03 06:29:36 raasch
	171	! Initial revision
	172	!
	173	!
	174	! Description:
	175	! ------------
[1682]	176	!> Output of the 3D-arrays in netCDF and/or AVS format.
[1]	177	!------------------------------------------------------------------------------!
[1682]	178	SUBROUTINE data_output_3d( av )
	179
[1]	180
[1320]	181	USE arrays_3d, &
[2292]	182	ONLY: e, nc, nr, p, pt, prr, q, qc, ql, ql_c, ql_v, qr, rho_ocean, s, &
	183	sa, tend, u, v, vpt, w
[1320]	184
[1]	185	USE averaging
[1320]	186
[2696]	187	#if defined( __chem )
	188	USE chemistry_model_mod, &
	189	ONLY: chem_data_output_3d
	190	#endif
	191
[1320]	192	USE cloud_parameters, &
[1849]	193	ONLY: l_d_cp, pt_d_t
[1320]	194
	195	USE control_parameters, &
[2696]	196	ONLY: air_chemistry, cloud_physics, do3d, do3d_no, do3d_time_count, &
	197	io_blocks, io_group, land_surface, message_string, &
[2746]	198	ntdim_3d, nz_do3d, plant_canopy, &
[2232]	199	psolver, simulated_time, time_since_reference_point, &
	200	urban_surface, varnamelength
[1320]	201
	202	USE cpulog, &
	203	ONLY: log_point, cpu_log
	204
	205	USE indices, &
[2696]	206	ONLY: nbgp, nx, nxl, nxr, ny, nyn, nys, nzb, wall_flags_0
[1320]	207
	208	USE kinds
	209
[1551]	210	USE land_surface_model_mod, &
[2232]	211	ONLY: lsm_data_output_3d, nzb_soil, nzt_soil
[1551]	212
[1783]	213	#if defined( __netcdf )
	214	USE NETCDF
	215	#endif
	216
	217	USE netcdf_interface, &
[2696]	218	ONLY: fill_value, id_set_3d, id_var_do3d, id_var_time_3d, nc_stat, &
[1783]	219	netcdf_data_format, netcdf_handle_error
[1320]	220
	221	USE particle_attributes, &
[1359]	222	ONLY: grid_particles, number_of_particles, particles, &
	223	particle_advection_start, prt_count
[1320]	224
[1]	225	USE pegrid
	226
[2209]	227	USE plant_canopy_model_mod, &
[2746]	228	ONLY: pcm_data_output_3d
[2209]	229
[1585]	230	USE radiation_model_mod, &
[2696]	231	ONLY: nzub, nzut, radiation, radiation_data_output_3d
[1585]	232
[2696]	233	USE turbulence_closure_mod, &
	234	ONLY: tcm_data_output_3d
	235
[2007]	236	USE urban_surface_mod, &
[2696]	237	ONLY: usm_data_output_3d
[1585]	238
[2007]	239
[1]	240	IMPLICIT NONE
	241
[1682]	242	INTEGER(iwp) :: av !<
[2696]	243	INTEGER(iwp) :: flag_nr !< number of masking flag
[1682]	244	INTEGER(iwp) :: i !<
	245	INTEGER(iwp) :: if !<
	246	INTEGER(iwp) :: j !<
	247	INTEGER(iwp) :: k !<
	248	INTEGER(iwp) :: n !<
	249	INTEGER(iwp) :: nzb_do !< vertical lower limit for data output
	250	INTEGER(iwp) :: nzt_do !< vertical upper limit for data output
[1]	251
[1682]	252	LOGICAL :: found !<
	253	LOGICAL :: resorted !<
[1]	254
[1682]	255	REAL(wp) :: mean_r !<
	256	REAL(wp) :: s_r2 !<
	257	REAL(wp) :: s_r3 !<
[1]	258
[1682]	259	REAL(sp), DIMENSION(:,:,:), ALLOCATABLE :: local_pf !<
[1]	260
[1682]	261	REAL(wp), DIMENSION(:,:,:), POINTER :: to_be_resorted !<
[1]	262
[2011]	263	CHARACTER (LEN=varnamelength) :: trimvar !< TRIM of output-variable string
[2007]	264
[1]	265	!
	266	!-- Return, if nothing to output
	267	IF ( do3d_no(av) == 0 ) RETURN
	268
	269	CALL cpu_log (log_point(14),'data_output_3d','start')
	270
	271	!
	272	!-- Open output file.
[2512]	273	!-- For classic or 64bit netCDF output on more than one PE, each PE opens its
	274	!-- own file and writes the data of its subdomain in binary format. After the
	275	!-- run, these files are combined to one NetCDF file by combine_plot_fields.
[1031]	276	!-- For netCDF4/HDF5 output, data is written in parallel into one file.
[1327]	277	IF ( netcdf_data_format < 5 ) THEN
	278	CALL check_open( 30 )
	279	IF ( myid == 0 ) CALL check_open( 106+av*10 )
[493]	280	ELSE
[1327]	281	CALL check_open( 106+av*10 )
[493]	282	ENDIF
[1]	283
	284	!
[1745]	285	!-- For parallel netcdf output the time axis must be limited. Return, if this
	286	!-- limit is exceeded. This could be the case, if the simulated time exceeds
	287	!-- the given end time by the length of the given output interval.
	288	IF ( netcdf_data_format > 4 ) THEN
	289	IF ( do3d_time_count(av) + 1 > ntdim_3d(av) ) THEN
	290	WRITE ( message_string, * ) 'Output of 3d data is not given at t=', &
	291	simulated_time, '&because the maximum ', &
	292	'number of output time levels is ', &
	293	'exceeded.'
	294	CALL message( 'data_output_3d', 'PA0387', 0, 1, 0, 6, 0 )
	295	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
	296	RETURN
	297	ENDIF
	298	ENDIF
	299
	300	!
[1031]	301	!-- Update the netCDF time axis
[1308]	302	!-- In case of parallel output, this is only done by PE0 to increase the
	303	!-- performance.
[1]	304	#if defined( __netcdf )
[1308]	305	do3d_time_count(av) = do3d_time_count(av) + 1
	306	IF ( myid == 0 ) THEN
[1327]	307	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_time_3d(av), &
	308	(/ time_since_reference_point /), &
	309	start = (/ do3d_time_count(av) /), &
	310	count = (/ 1 /) )
[1783]	311	CALL netcdf_handle_error( 'data_output_3d', 376 )
[1]	312	ENDIF
	313	#endif
	314
	315	!
	316	!-- Loop over all variables to be written.
	317	if = 1
	318
	319	DO WHILE ( do3d(av,if)(1:1) /= ' ' )
[2007]	320
[1]	321	!
[2007]	322	!-- Temporary solution to account for data output within the new urban
	323	!-- surface model (urban_surface_mod.f90), see also SELECT CASE ( trimvar ).
[1]	324	!-- Store the array chosen on the temporary array.
[2007]	325	trimvar = TRIM( do3d(av,if) )
[2011]	326	IF ( urban_surface .AND. trimvar(1:4) == 'usm_' ) THEN
[2007]	327	trimvar = 'usm_output'
	328	resorted = .TRUE.
	329	nzb_do = nzub
	330	nzt_do = nzut
	331	ELSE
	332	resorted = .FALSE.
	333	nzb_do = nzb
	334	nzt_do = nz_do3d
	335	ENDIF
[1551]	336	!
[1980]	337	!-- Set flag to steer output of radiation, land-surface, or user-defined
	338	!-- quantities
	339	found = .FALSE.
	340	!
[1551]	341	!-- Allocate a temporary array with the desired output dimensions.
[2512]	342	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	343	!
	344	!-- Before each output, set array local_pf to fill value
	345	local_pf = fill_value
	346	!
	347	!-- Set masking flag for topography for not resorted arrays
	348	flag_nr = 0
[1551]	349
[2007]	350	SELECT CASE ( trimvar )
[1]	351
	352	CASE ( 'e' )
	353	IF ( av == 0 ) THEN
	354	to_be_resorted => e
	355	ELSE
	356	to_be_resorted => e_av
	357	ENDIF
	358
[771]	359	CASE ( 'lpt' )
	360	IF ( av == 0 ) THEN
	361	to_be_resorted => pt
	362	ELSE
	363	to_be_resorted => lpt_av
	364	ENDIF
	365
[2292]	366	CASE ( 'nc' )
	367	IF ( av == 0 ) THEN
	368	to_be_resorted => nc
	369	ELSE
	370	to_be_resorted => nc_av
	371	ENDIF
	372
[1053]	373	CASE ( 'nr' )
	374	IF ( av == 0 ) THEN
	375	to_be_resorted => nr
	376	ELSE
	377	to_be_resorted => nr_av
	378	ENDIF
	379
[1]	380	CASE ( 'p' )
	381	IF ( av == 0 ) THEN
[727]	382	IF ( psolver /= 'sor' ) CALL exchange_horiz( p, nbgp )
[1]	383	to_be_resorted => p
	384	ELSE
[727]	385	IF ( psolver /= 'sor' ) CALL exchange_horiz( p_av, nbgp )
[1]	386	to_be_resorted => p_av
	387	ENDIF
	388
	389	CASE ( 'pc' ) ! particle concentration (requires ghostpoint exchange)
	390	IF ( av == 0 ) THEN
[1359]	391	IF ( simulated_time >= particle_advection_start ) THEN
	392	tend = prt_count
	393	ELSE
	394	tend = 0.0_wp
	395	ENDIF
[2512]	396	DO i = nxl, nxr
	397	DO j = nys, nyn
[1551]	398	DO k = nzb_do, nzt_do
[1]	399	local_pf(i,j,k) = tend(k,j,i)
	400	ENDDO
	401	ENDDO
	402	ENDDO
	403	resorted = .TRUE.
	404	ELSE
	405	to_be_resorted => pc_av
	406	ENDIF
	407
[1359]	408	CASE ( 'pr' ) ! mean particle radius (effective radius)
[1]	409	IF ( av == 0 ) THEN
[1359]	410	IF ( simulated_time >= particle_advection_start ) THEN
	411	DO i = nxl, nxr
	412	DO j = nys, nyn
[1551]	413	DO k = nzb_do, nzt_do
[1359]	414	number_of_particles = prt_count(k,j,i)
	415	IF (number_of_particles <= 0) CYCLE
	416	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	417	s_r2 = 0.0_wp
	418	s_r3 = 0.0_wp
	419	DO n = 1, number_of_particles
	420	IF ( particles(n)%particle_mask ) THEN
	421	s_r2 = s_r2 + particles(n)%radius*2 &
	422	particles(n)%weight_factor
	423	s_r3 = s_r3 + particles(n)%radius*3 &
	424	particles(n)%weight_factor
	425	ENDIF
	426	ENDDO
	427	IF ( s_r2 > 0.0_wp ) THEN
	428	mean_r = s_r3 / s_r2
	429	ELSE
	430	mean_r = 0.0_wp
	431	ENDIF
	432	tend(k,j,i) = mean_r
[1]	433	ENDDO
	434	ENDDO
	435	ENDDO
[1359]	436	ELSE
	437	tend = 0.0_wp
	438	ENDIF
[2512]	439	DO i = nxl, nxr
	440	DO j = nys, nyn
[1551]	441	DO k = nzb_do, nzt_do
[1]	442	local_pf(i,j,k) = tend(k,j,i)
	443	ENDDO
	444	ENDDO
	445	ENDDO
	446	resorted = .TRUE.
	447	ELSE
	448	to_be_resorted => pr_av
	449	ENDIF
	450
[1053]	451	CASE ( 'prr' )
	452	IF ( av == 0 ) THEN
[2512]	453	DO i = nxl, nxr
	454	DO j = nys, nyn
[1822]	455	DO k = nzb_do, nzt_do
[1053]	456	local_pf(i,j,k) = prr(k,j,i)
	457	ENDDO
	458	ENDDO
	459	ENDDO
	460	ELSE
[2512]	461	DO i = nxl, nxr
	462	DO j = nys, nyn
[1822]	463	DO k = nzb_do, nzt_do
[1053]	464	local_pf(i,j,k) = prr_av(k,j,i)
	465	ENDDO
	466	ENDDO
	467	ENDDO
	468	ENDIF
	469	resorted = .TRUE.
	470
[1]	471	CASE ( 'pt' )
	472	IF ( av == 0 ) THEN
	473	IF ( .NOT. cloud_physics ) THEN
	474	to_be_resorted => pt
	475	ELSE
[2512]	476	DO i = nxl, nxr
	477	DO j = nys, nyn
[1551]	478	DO k = nzb_do, nzt_do
[1320]	479	local_pf(i,j,k) = pt(k,j,i) + l_d_cp * &
	480	pt_d_t(k) * &
[1]	481	ql(k,j,i)
	482	ENDDO
	483	ENDDO
	484	ENDDO
	485	resorted = .TRUE.
	486	ENDIF
	487	ELSE
	488	to_be_resorted => pt_av
	489	ENDIF
	490
	491	CASE ( 'q' )
	492	IF ( av == 0 ) THEN
	493	to_be_resorted => q
	494	ELSE
	495	to_be_resorted => q_av
	496	ENDIF
[691]	497
[1053]	498	CASE ( 'qc' )
[1]	499	IF ( av == 0 ) THEN
[1115]	500	to_be_resorted => qc
[1]	501	ELSE
[1115]	502	to_be_resorted => qc_av
[1]	503	ENDIF
	504
[1053]	505	CASE ( 'ql' )
	506	IF ( av == 0 ) THEN
[1115]	507	to_be_resorted => ql
[1053]	508	ELSE
[1115]	509	to_be_resorted => ql_av
[1053]	510	ENDIF
	511
[1]	512	CASE ( 'ql_c' )
	513	IF ( av == 0 ) THEN
	514	to_be_resorted => ql_c
	515	ELSE
	516	to_be_resorted => ql_c_av
	517	ENDIF
	518
	519	CASE ( 'ql_v' )
	520	IF ( av == 0 ) THEN
	521	to_be_resorted => ql_v
	522	ELSE
	523	to_be_resorted => ql_v_av
	524	ENDIF
	525
	526	CASE ( 'ql_vp' )
	527	IF ( av == 0 ) THEN
[1359]	528	IF ( simulated_time >= particle_advection_start ) THEN
	529	DO i = nxl, nxr
	530	DO j = nys, nyn
[1551]	531	DO k = nzb_do, nzt_do
[1359]	532	number_of_particles = prt_count(k,j,i)
	533	IF (number_of_particles <= 0) CYCLE
	534	particles => grid_particles(k,j,i)%particles(1:number_of_particles)
	535	DO n = 1, number_of_particles
	536	IF ( particles(n)%particle_mask ) THEN
	537	tend(k,j,i) = tend(k,j,i) + &
	538	particles(n)%weight_factor / &
	539	prt_count(k,j,i)
	540	ENDIF
	541	ENDDO
[1007]	542	ENDDO
	543	ENDDO
	544	ENDDO
[1359]	545	ELSE
	546	tend = 0.0_wp
	547	ENDIF
[2512]	548	DO i = nxl, nxr
	549	DO j = nys, nyn
[1551]	550	DO k = nzb_do, nzt_do
[1007]	551	local_pf(i,j,k) = tend(k,j,i)
	552	ENDDO
	553	ENDDO
	554	ENDDO
	555	resorted = .TRUE.
[1]	556	ELSE
	557	to_be_resorted => ql_vp_av
	558	ENDIF
	559
[1053]	560	CASE ( 'qr' )
	561	IF ( av == 0 ) THEN
	562	to_be_resorted => qr
	563	ELSE
	564	to_be_resorted => qr_av
	565	ENDIF
	566
[1]	567	CASE ( 'qv' )
	568	IF ( av == 0 ) THEN
[2512]	569	DO i = nxl, nxr
	570	DO j = nys, nyn
[1551]	571	DO k = nzb_do, nzt_do
[1]	572	local_pf(i,j,k) = q(k,j,i) - ql(k,j,i)
	573	ENDDO
	574	ENDDO
	575	ENDDO
	576	resorted = .TRUE.
	577	ELSE
	578	to_be_resorted => qv_av
	579	ENDIF
	580
[2031]	581	CASE ( 'rho_ocean' )
[96]	582	IF ( av == 0 ) THEN
[2031]	583	to_be_resorted => rho_ocean
[96]	584	ELSE
[2031]	585	to_be_resorted => rho_ocean_av
[96]	586	ENDIF
[691]	587
[1]	588	CASE ( 's' )
	589	IF ( av == 0 ) THEN
[1960]	590	to_be_resorted => s
[1]	591	ELSE
[355]	592	to_be_resorted => s_av
[1]	593	ENDIF
[691]	594
[96]	595	CASE ( 'sa' )
	596	IF ( av == 0 ) THEN
	597	to_be_resorted => sa
	598	ELSE
	599	to_be_resorted => sa_av
	600	ENDIF
[691]	601
[1]	602	CASE ( 'u' )
[2696]	603	flag_nr = 1
[1]	604	IF ( av == 0 ) THEN
	605	to_be_resorted => u
	606	ELSE
	607	to_be_resorted => u_av
	608	ENDIF
	609
	610	CASE ( 'v' )
[2696]	611	flag_nr = 2
[1]	612	IF ( av == 0 ) THEN
	613	to_be_resorted => v
	614	ELSE
	615	to_be_resorted => v_av
	616	ENDIF
	617
	618	CASE ( 'vpt' )
	619	IF ( av == 0 ) THEN
	620	to_be_resorted => vpt
	621	ELSE
	622	to_be_resorted => vpt_av
	623	ENDIF
	624
	625	CASE ( 'w' )
[2696]	626	flag_nr = 3
[1]	627	IF ( av == 0 ) THEN
	628	to_be_resorted => w
	629	ELSE
	630	to_be_resorted => w_av
	631	ENDIF
[2007]	632	!
	633	!-- Block of urban surface model outputs
	634	CASE ( 'usm_output' )
	635	CALL usm_data_output_3d( av, do3d(av,if), found, local_pf, &
	636	nzb_do, nzt_do )
[1]	637
	638	CASE DEFAULT
[1972]	639
[1]	640	!
[1972]	641	!-- Land surface quantity
	642	IF ( land_surface ) THEN
	643	!
	644	!-- For soil model quantities, it is required to re-allocate local_pf
	645	nzb_do = nzb_soil
	646	nzt_do = nzt_soil
	647
	648	DEALLOCATE ( local_pf )
[2512]	649	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[2696]	650	local_pf = fill_value
[1972]	651
	652	CALL lsm_data_output_3d( av, do3d(av,if), found, local_pf )
	653	resorted = .TRUE.
[1976]	654
	655	!
	656	!-- If no soil model variable was found, re-allocate local_pf
	657	IF ( .NOT. found ) THEN
	658	nzb_do = nzb
	659	nzt_do = nz_do3d
	660
	661	DEALLOCATE ( local_pf )
[2512]	662	ALLOCATE( local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do) )
[1976]	663	ENDIF
	664
[1972]	665	ENDIF
	666
[2696]	667	IF ( .NOT. found ) THEN
	668	CALL tcm_data_output_3d( av, do3d(av,if), found, local_pf )
	669	resorted = .TRUE.
	670	ENDIF
	671
[1972]	672	!
[1976]	673	!-- Radiation quantity
	674	IF ( .NOT. found .AND. radiation ) THEN
	675	CALL radiation_data_output_3d( av, do3d(av,if), found, &
	676	local_pf )
	677	resorted = .TRUE.
	678	ENDIF
	679
	680	!
[2696]	681	!-- Chemistry model output
	682	#if defined( __chem )
	683	IF ( .NOT. found .AND. air_chemistry ) THEN
	684	CALL chem_data_output_3d( av, do3d(av,if), found, &
[2756]	685	local_pf, fill_value )
[2696]	686	resorted = .TRUE.
	687	ENDIF
	688	#endif
	689
	690	!
[2209]	691	!-- Plant canopy model output
	692	IF ( .NOT. found .AND. plant_canopy ) THEN
[2696]	693	CALL pcm_data_output_3d( av, do3d(av,if), found, local_pf, &
	694	fill_value )
[2209]	695	resorted = .TRUE.
	696	ENDIF
	697
	698	!
[1]	699	!-- User defined quantity
[1972]	700	IF ( .NOT. found ) THEN
	701	CALL user_data_output_3d( av, do3d(av,if), found, local_pf, &
	702	nzb_do, nzt_do )
	703	resorted = .TRUE.
	704	ENDIF
[1]	705
[254]	706	IF ( .NOT. found ) THEN
[1320]	707	message_string = 'no output available for: ' // &
[274]	708	TRIM( do3d(av,if) )
[254]	709	CALL message( 'data_output_3d', 'PA0182', 0, 0, 0, 6, 0 )
[1]	710	ENDIF
	711
	712	END SELECT
	713
	714	!
	715	!-- Resort the array to be output, if not done above
	716	IF ( .NOT. resorted ) THEN
[2512]	717	DO i = nxl, nxr
	718	DO j = nys, nyn
[1551]	719	DO k = nzb_do, nzt_do
[2696]	720	local_pf(i,j,k) = MERGE( &
	721	to_be_resorted(k,j,i), &
	722	REAL( fill_value, KIND = wp ), &
	723	BTEST( wall_flags_0(k,j,i), flag_nr ) )
[1]	724	ENDDO
	725	ENDDO
	726	ENDDO
	727	ENDIF
	728
	729	!
[1327]	730	!-- Output of the 3D-array
	731	#if defined( __parallel )
	732	IF ( netcdf_data_format < 5 ) THEN
[1]	733	!
[1327]	734	!-- Non-parallel netCDF output. Data is output in parallel in
	735	!-- FORTRAN binary format here, and later collected into one file by
	736	!-- combine_plot_fields
	737	IF ( myid == 0 ) THEN
	738	WRITE ( 30 ) time_since_reference_point, &
	739	do3d_time_count(av), av
[1]	740	ENDIF
[1327]	741	DO i = 0, io_blocks-1
	742	IF ( i == io_group ) THEN
[2512]	743	WRITE ( 30 ) nxl, nxr, nys, nyn, nzb_do, nzt_do
[1551]	744	WRITE ( 30 ) local_pf(:,:,nzb_do:nzt_do)
[1327]	745	ENDIF
[1972]	746
[1327]	747	CALL MPI_BARRIER( comm2d, ierr )
[1972]	748
[1327]	749	ENDDO
[559]	750
[1327]	751	ELSE
[646]	752	#if defined( __netcdf )
[493]	753	!
[1327]	754	!-- Parallel output in netCDF4/HDF5 format.
[2512]	755	! IF ( nxr == nx .AND. nyn /= ny ) THEN
	756	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	757	! local_pf(nxl:nxr+1,nys:nyn,nzb_do:nzt_do), &
	758	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	759	! count = (/ nxr-nxl+2, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
	760	! ELSEIF ( nxr /= nx .AND. nyn == ny ) THEN
	761	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	762	! local_pf(nxl:nxr,nys:nyn+1,nzb_do:nzt_do), &
	763	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	764	! count = (/ nxr-nxl+1, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	765	! ELSEIF ( nxr == nx .AND. nyn == ny ) THEN
	766	! nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
	767	! local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do ), &
	768	! start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	769	! count = (/ nxr-nxl+2, nyn-nys+2, nzt_do-nzb_do+1, 1 /) )
	770	! ELSE
[1327]	771	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	772	local_pf(nxl:nxr,nys:nyn,nzb_do:nzt_do), &
	773	start = (/ nxl+1, nys+1, nzb_do+1, do3d_time_count(av) /), &
	774	count = (/ nxr-nxl+1, nyn-nys+1, nzt_do-nzb_do+1, 1 /) )
[2512]	775	! ENDIF
[1783]	776	CALL netcdf_handle_error( 'data_output_3d', 386 )
[646]	777	#endif
[1327]	778	ENDIF
[1]	779	#else
	780	#if defined( __netcdf )
[1327]	781	nc_stat = NF90_PUT_VAR( id_set_3d(av), id_var_do3d(av,if), &
[1551]	782	local_pf(nxl:nxr+1,nys:nyn+1,nzb_do:nzt_do), &
[1327]	783	start = (/ 1, 1, 1, do3d_time_count(av) /), &
[2512]	784	count = (/ nx+1, ny+1, nzt_do-nzb_do+1, 1 /) )
[1783]	785	CALL netcdf_handle_error( 'data_output_3d', 446 )
[1]	786	#endif
	787	#endif
	788
	789	if = if + 1
	790
	791	!
[1551]	792	!-- Deallocate temporary array
	793	DEALLOCATE ( local_pf )
[1]	794
[1551]	795	ENDDO
[1]	796
[1318]	797	CALL cpu_log( log_point(14), 'data_output_3d', 'stop' )
[1]	798
	799	!
	800	!-- Formats.
[1320]	801	3300 FORMAT ('variable ',I4,' file=',A,' filetype=unformatted skip=',I12/ &
[1]	802	'label = ',A,A)
	803
	804	END SUBROUTINE data_output_3d

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