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subjob @ 516

Last change on this file since 516 was 493, checked in by raasch, 14 years ago

New:
---
Output in NetCDF4-format. New d3par-parameter netcdf_data_format.

(check_open, check_parameters, close_file, data_output_2d, data_output_3d, header, modules, netcdf, parin)

Modules to be loaded for compilation (mbuild) or job execution (mrun)
can be given in the configuration file using variable modules. Example:

%modules ifort/11.0.069:netcdf lcsgih parallel

This method replaces the (undocumented) mpilib-variable.

WARNING: All fixed settings of modules in the scripts mbuild, mrun, and subjob
have been removed! Please set the modules variable appropriately in your
configuration file. (mbuild, mrun, subjob)

Changed:

Parameters netcdf_64bit and netcdf_64bit_3d have been removed. Use
netcdf_data_format = 2 for choosing the classic 64bit-offset format (this is
the default). The offset-format can not be set independently for the
3d-output-data any more.

Parameters netcdf_format_mask, netcdf_format_mask_av, and variables
nc_format_mask, format_parallel_io removed. They are replaced by the new
parameter netcdf_data_format. (check_open, close_file,
data_output_mask, header, init_masks, modules, parin)

Errors:

bugfix in trunk/UTIL/Makefile: forgot to compile for interpret_config

Bugfix: timeseries data have to be collected by PE0 (user_statistics)

Property svn:keywords set to Id Rev

File size: 47.0 KB

Line
1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 493 2010-03-01 08:30:24Z raasch $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84	# 27/07/07 - Siggi - autan admitted
85	# 03/08/07 - Marcus- lcfimm admitted
86	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
87	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
88	# suggestions
89	# 19/10/07 - Marcus- add new optional argument -g group_number
90	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
91	# 30/10/07 - Marcus- further adjustments for queues on lctit
92	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
93	# Science)
94	# 14/07/08 - Siggi - adjustments for lcsgih
95	# 23/09/08 - Gerald- paesano admitted
96	# 02/10/08 - Siggi - PBS adjustments for lcxt4
97	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
98	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
99	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
100	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
101	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
102	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
103	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
104	# now run on the data nodes (feature=data)
105	# 25/08/09 - BjornM- adapted for lck
106	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
107	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
108	# set in the config file by the user
109	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
110	# adding special1q
111	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
112	# 16/10/09 - Carolin-adding permq
113	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
114	# 03/02/10 - Siggi - bug in serial jobs removed
115	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
116	# notification)
117	# 01/03/10 - Siggi - loading of modules controlled by environment variable
118	# module_calls
119
120
121
122	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
123	delete_dayfile=false
124	email_notification=none
125	group_number=none
126	locat=normal
127	no_default_queue=none
128	no_submit=false
129	job_catalog="~/job_queue"
130	job_name=none
131	local_user=$LOGNAME
132	node_usage=shared
133	numprocs=0
134	punkte="..........................................................."
135	submcom=qsub
136	queue=default
137	remote_host=none
138	remote_user=""
139	verify=true
140
141	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
142	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
143	typeset -L20 spalte1
144	typeset -R40 spalte2
145	typeset -L60 spalte3
146
147
148
149	# FEHLERBEHANDLUNG
150	# BEI EXIT:
151	trap 'if [[ $locat != normal ]]
152	then
153	case $locat in
154	(option) printf "\n --> available optios can be displayed"
155	printf " by typing:"
156	printf "\n \"subjob ?\" \n";;
157	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
158	(*) printf "\n +++ unknown error"
159	printf "\n please inform S. Raasch!\n"
160	esac
161	[[ -f $job_to_send ]] && rm $job_to_send
162	printf "\n\n+++ SUBJOB killed \n\n"
163	fi' exit
164
165
166	# BEI TERMINAL-BREAK:
167	trap '[[ -f $job_to_send ]] && rm $job_to_send
168	printf "\n\n+++ SUBJOB killed \n\n"
169	exit
170	' 2
171
172
173
174
175	# LOKALEN HOSTNAMEN FESTSTELLEN
176	local_host=$(hostname)
177
178
179
180	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
181	# UEBERHAUPT ZULAESSIG IST
182	case $local_host in
183	(atmos) local_addres=172.20.25.35; local_host=lcide;;
184	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
185	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
186	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
187	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
188	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
189	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
190	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
191	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
192	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
193	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
194	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
195	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
196	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
197	(cs*) local_addres=136.172.44.131; local_host=nech;;
198	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
199	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
200	(node*) local_addres=165.132.26.61 local_host=lck;;
201	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
202	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
203	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
204	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
205	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
206	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxt4;;
207	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
208	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
209	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
210	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
211	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
212	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
213	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
214	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
215	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
216	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
217	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
218	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
219	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
220	(nid*) local_addres=129.177.20.113; local_host=lcxt4;;
221	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
222	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
223	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
224	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
225	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
226	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
227	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
228	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
229	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
230	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
231	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
232	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
233	(*) printf "\n +++ \"$local_host\" unknown";
234	printf "\n please inform S. Raasch!";
235	locat=parameter; exit;;
236	esac
237
238
239
240	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
241	remote_host=$local_host
242
243
244
245
246	# PROZEDUROPTIONEN EINLESEN
247	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
248	do
249	case $option in
250	(c) job_catalog=$OPTARG;;
251	(d) delete_dayfile=true;;
252	(D) no_submit=true;;
253	(e) email_notification=$OPTARG;;
254	(g) group_number=$OPTARG;;
255	(h) remote_host=$OPTARG;;
256	(m) memory=$OPTARG;;
257	(n) job_name=$OPTARG;;
258	(N) node_usage=$OPTARG;;
259	(O) threads_per_task=$OPTARG;;
260	(q) no_default_queue=$OPTARG;;
261	(t) cputime=$OPTARG;;
262	(T) tasks_per_node=$OPTARG;;
263	(u) remote_user=$OPTARG;;
264	(v) verify=false;;
265	(X) numprocs=$OPTARG;;
266	(\?) printf "\n +++ Option $OPTARG unknown \n";
267	locat=option; exit;;
268	esac
269	done
270
271
272	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
273	shift OPTIND-1; file_to_send=$1
274
275
276	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
277	if [ "$1" = "?" ]
278	then
279	(printf "\n *** subjob can be called as follows:\n"
280	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
281	printf "\n Description of available options:\n"
282	printf "\n Option Description Default-Value"
283	printf "\n -c job-input- and output-catalog ~/job_queue"
284	printf "\n -d no job-protocol will be created ---"
285	printf "\n -D only the job-file will be created ---"
286	printf "\n -h execution host, available hosts: $remote_host"
287	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
288	printf "\n lctit, nech, necriam, unics"
289	printf "\n -m memory demand per process in MByte ---"
290	printf "\n -n jobname <jobdatei>"
291	printf "\n -O threads per task (for OpenMP usage) 1"
292	printf "\n -q job-queue to be used default"
293	printf "\n -t allowed cpu-time in seconds ---"
294	printf "\n -T tasks per node (on parallel hosts) ---"
295	printf "\n -u username on execution host from .netrc"
296	printf "\n -v no prompt for confirmation ---"
297	printf "\n -X # of processors (on parallel hosts) 1"
298	printf "\n "
299	printf "\n The only possible positional parameter is <jobfile>:"
300	printf "\n The complete NQS-job must be provided here."
301	printf "\n <jobfile>=? creates this outline\n\n") \| more
302	exit
303	fi
304
305
306
307	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
308	if [[ "$file_to_send" = "" ]]
309	then
310	printf "\n +++ job-file missing"
311	locat=parameter; exit
312	else
313	if [[ -f $file_to_send ]]
314	then
315	true
316	else
317	printf "\n +++ job-file: "
318	printf "\n $file_to_send"
319	printf "\n does not exist"
320	locat=parameter; exit
321	fi
322	fi
323
324
325
326	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
327	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
328	if [[ $job_name = none ]]
329	then
330	job_name=$file_to_send
331	fi
332	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
333	then
334	printf "\n +++ job-file name: "
335	printf "\n $job_name"
336	printf "\n must not contain \"/\"-characters"
337	locat=parameter; exit
338	fi
339
340
341
342
343	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
344	# ODER WENN HOST NICHT ANGEGEBEN WURDE
345	if [[ $remote_host = none ]]
346	then
347	printf "\n +++ host missing"
348	locat=option; exit
349	else
350	case $remote_host in
351	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
352	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
353	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
354	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
355	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
356	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
357	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
358	(lcsgib) queue=smallq; remote_addres=130.73.232.102; submcom=/opt/moab/bin/msub;;
359	(lcsgih) queue=smallq; remote_addres=130.75.4.103; submcom=/opt/moab/bin/msub;;
360	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
361	(lctit) queue=lctit; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
362	(lcxt4) remote_addres=129.177.20.113; submcom=/opt/torque/2.3.0/bin/qsub;;
363	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
364	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
365	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
366	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
367	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
368	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
369	locat=parameter; exit;;
370	esac
371	fi
372
373
374	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
375	if [[ $no_default_queue != none ]]
376	then
377	error=false
378	ndq=$no_default_queue
379	case $remote_host in
380	(ibm) case $ndq in
381	(p690_express\|p690_standard\|p690_long) error=false;;
382	(*) error=true;;
383	esac;;
384	(ibmb) case $ndq in
385	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
386	(*) error=true;;
387	esac;;
388	(ibmh) case $ndq in
389	(no_class) error=false;;
390	(*) error=true;;
391	esac;;
392	(ibms) case $ndq in
393	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
394	(*) error=true;;
395	esac;;
396	(ibmy) case $ndq in
397	(parallel) error=false;;
398	(*) error=true;;
399	esac;;
400	(lckyoto) case $ndq in
401	(eh\|ph) error=false;;
402	(*) error=true;;
403	esac;;
404	(lcsgib\|lcsgih) case $ndq in
405	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
406	(*) error=true;;
407	esac;;
408	(lctit) case $ndq in
409	(novice\|sla1\|sla2\|sla3\|RAM64GB\|RAM128GB) error=false;;
410	(*) error=true;;
411	esac;;
412	(t3eb) case $ndq in
413	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
414	(*) error=true;;
415	esac;;
416	(necriam) case $ndq in
417	(SP\|SS\|P6) error=false;;
418	(*) error=true;;
419	esac;;
420	(t3eh) case $ndq in
421	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
422	(*) error=true;;
423	esac;;
424	(t3ej2\|t3ej5) case $ndq in
425	(low\|normal\|high) error=false;;
426	(*) error=true;;
427	esac;;
428	(t3es) case $ndq in
429	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
430	(*) error=true;;
431	esac;;
432	(unics) case $ndq in
433	(unics\|ht) error=false;;
434	(*) error=true;;
435	esac;;
436	esac
437	if [[ $error = true ]]
438	then
439	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
440	locat=parameter; exit
441	else
442	queue=$no_default_queue
443	fi
444	fi
445
446
447
448	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
449	if [[ $node_usage != shared && $queue = cdev ]]
450	then
451	node_usage=shared
452	fi
453
454
455
456	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
457	# AUFTEILEN
458	done=false
459	while [[ $done = false ]]
460	do
461	if (( $cputime <= 0 ))
462	then
463	printf "\n +++ wrong cpu-time or cpu-time missing"
464	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
465	printf "\n >>> "
466	read cputime 1>/dev/null 2>&1
467	else
468	done=true
469	fi
470	done
471	if [[ $remote_host = nech ]]
472	then
473	if (( tasks_per_node != 0 ))
474	then
475	(( cputime = cputime * tasks_per_node ))
476	elif [[ $numprocs != 0 ]]
477	then
478	(( cputime = cputime * numprocs ))
479	fi
480	fi
481	(( stunden = cputime / 3600 ))
482	(( resttime = cputime - stunden * 3600 ))
483	(( minuten = resttime / 60 ))
484	(( sekunden = resttime - minuten * 60 ))
485	timestring=${stunden}:${minuten}:${sekunden}
486
487
488
489	# PRUEFEN DER KERNSPEICHERANFORDERUNG
490	done=false
491	while [[ $done = false ]]
492	do
493	if (( memory <= 0 ))
494	then
495	printf "\n +++ wrong memory demand or memory demand missing"
496	printf "\n >>> Please type memory in MByte per process as INTEGER:"
497	printf "\n >>> "
498	read memory 1>/dev/null 2>&1
499	else
500	done=true
501	fi
502	done
503
504	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
505	then
506	if (( tasks_per_node != 0 ))
507	then
508	(( Memory = memory * tasks_per_node / 1000 ))
509	elif [[ $numprocs != 0 ]]
510	then
511	(( Memory = memory * numprocs / 1000 ))
512	else
513	(( Memory = memory / 1000 ))
514	fi
515	fi
516
517
518	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
519	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
520	then
521	(( memory = memory * threads_per_task ))
522	fi
523
524
525	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
526	if (( tasks_per_node != 0 ))
527	then
528	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
529	then
530	(( nodes = numprocs / tasks_per_node ))
531	else
532	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
533	fi
534	fi
535
536
537
538	# HEADER-AUSGABE
539	if [[ $verify = true ]]
540	then
541	printf "\n\n"
542	printf "#--------------------------------------------------------------# \n"
543	spalte1=SUBJOB;spalte2=$(date)
544	printf "\| $spalte1$spalte2 \| \n"
545	printf "\| \| \n"
546	printf "\| values of parameters/options: \| \n"
547	spalte1=local_host$punkte; spalte2=$punkte$local_host
548	printf "\| $spalte1$spalte2 \| \n"
549	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
550	printf "\| $spalte1$spalte2 \| \n"
551	spalte1=queue$punkte; spalte2=$punkte$queue
552	printf "\| $spalte1$spalte2 \| \n"
553	spalte1=memory$punkte; spalte2="$punkte$memory mb"
554	printf "\| $spalte1$spalte2 \| \n"
555	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
556	printf "\| $spalte1$spalte2 \| \n"
557	spalte1=job_name$punkte; spalte2="$punkte$job_name"
558	printf "\| $spalte1$spalte2 \| \n"
559	printf "#--------------------------------------------------------------# \n\n"
560
561
562	# KONTROLLABFRAGE, OB ALLES O.K.
563	antwort="dummy"
564	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
565	do
566	read antwort?" >>> continue (y/n) ? "
567	done
568	if [[ $antwort = n \|\| $antwort = N ]]
569	then
570	locat=verify; exit
571	fi
572	printf "\n"
573	fi
574
575
576
577	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
578	kennung=$RANDOM
579	job_on_remhost=${job_name}_${kennung}_$local_host
580	job_to_send=job_to_send_$kennung
581	if [[ $delete_dayfile = false ]]
582	then
583	remote_dayfile=${local_host}_${job_name}_result_$kennung
584	local_dayfile=${remote_host}_${job_name}
585	else
586	remote_dayfile=/dev/null
587	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
588	then
589	notification='# @ notification = never'
590	fi
591	fi
592
593
594
595	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
596	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
597	then
598
599	if [[ $remote_host = ibmy ]]
600	then
601	consumable_memory=""
602	else
603	consumable_memory="ConsumableMemory($memory mb)"
604	fi
605
606	if [[ $remote_host = ibmh ]]
607	then
608	data_limit=""
609	network_to_use=""
610	class=""
611	environment=""
612	else
613	class="# @ class = $queue"
614	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
615	if [[ $queue = cdev ]]
616	then
617	data_limit="# @ data_limit = 1.76gb"
618	network_to_use="# @ network.mpi = sn_all,shared,ip"
619	else
620	if [[ $remote_host = ibms ]]
621	then
622	network_to_use="# @ network.mpi = csss,shared,us"
623	elif [[ $remote_host = ibmy ]]
624	then
625	network_to_use=""
626	else
627	network_to_use="# @ network.mpi = sn_all,shared,us"
628	data_limit="# @ data_limit = 1.76gb"
629	fi
630	fi
631	fi
632
633	cat > $job_to_send << %%END%%
634	#!/bin/ksh
635	# @ shell = /bin/ksh
636
637	# @ job_type = parallel
638	# @ job_name = palm
639	# @ wall_clock_limit = ${timestring},$timestring
640	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
641	# @ output = $remote_dayfile
642	# @ error = $remote_dayfile
643	# @ image_size = 50
644	$class
645	$environment
646	$network_to_use
647	$data_limit
648	$notification
649
650	%%END%%
651
652	if (( nodes > 0 ))
653	then
654
655	cat >> $job_to_send << %%END%%
656	# @ node = $nodes
657	# @ tasks_per_node = $tasks_per_node
658	# @ node_usage = $node_usage
659	# @ queue
660
661	%%END%%
662
663	else
664
665	if [[ $remote_host != ibmy ]]
666	then
667
668	cat >> $job_to_send << %%END%%
669	# @ blocking = unlimited
670	# @ total_tasks = $numprocs
671	# @ node_usage = $node_usage
672	# @ queue
673
674	%%END%%
675
676	else
677
678	cat >> $job_to_send << %%END%%
679	# @ node = 1
680	# @ total_tasks = $numprocs
681	# @ queue
682
683	%%END%%
684
685	fi
686
687	fi
688
689	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
690	then
691
692	cat > $job_to_send << %%END%%
693	#!/bin/ksh
694
695	# @ job_type = serial
696	# @ node_usage = $node_usage
697	# @ job_name = palm
698	# @ wall_clock_limit = ${timestring},$timestring
699	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
700	# @ output = $remote_dayfile
701	# @ error = $remote_dayfile
702	$class
703	$notification
704
705	# @ queue
706
707	%%END%%
708
709	elif [[ $remote_host = lcfimm ]]
710	then
711
712	if [[ $numprocs != 0 ]]
713	then
714	cat > $job_to_send << %%END%%
715	#!/bin/ksh
716	#PBS -N $job_name
717	#PBS -A geofysisk
718	#PBS -l walltime=$timestring
719	#PBS -l nodes=${nodes}:ppn=$tasks_per_node
720	#PBS -l pmem=${memory}mb
721	#PBS -m abe
722	#PBS -o $remote_dayfile
723	#PBS -j oe
724	mpd &
725
726	%%END%%
727
728	else
729	cat > $job_to_send << %%END%%
730	#!/bin/ksh
731	#PBS -N $job_name
732	#PBS -A geofysisk
733	#PBS -l walltime=$timestring
734	#PBS -l ncpus=1
735	#PBS -l pmem=${memory}mb
736	#PBS -m abe
737	#PBS -o $remote_dayfile
738	#PBS -j oe
739
740	%%END%%
741
742	fi
743
744	elif [[ $remote_host = lck ]]
745	then
746
747	if [[ $numprocs != 0 ]]
748	then
749	cat > $job_to_send << %%END%%
750	#!/bin/ksh
751	#PBS -N $job_name
752	#PBS -l walltime=$timestring
753	#PBS -l ncpus=$numprocs
754	#PBS -l pmem=${memory}mb
755	#PBS -o $remote_dayfile
756	#PBS -j oe
757
758	mpd &
759
760	%%END%%
761
762	else
763	cat > $job_to_send << %%END%%
764	#!/bin/ksh
765	#PBS -N $job_name
766	#PBS -l walltime=$timestring
767	#PBS -l ncpus=1
768	#PBS -l pmem=${memory}mb
769	#PBS -o $remote_dayfile
770	#PBS -j oe
771
772	%%END%%
773
774	fi
775
776	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
777	then
778
779	if [[ "$sgi_feature" != "" ]]
780	then
781	feature_directive="#PBS -l feature=$sgi_feature"
782	else
783	feature_directive=""
784	fi
785
786	if [[ $queue = dataq \|\| $queue = permq ]]
787	then
788	feature_directive="#PBS -l feature=data"
789	fi
790
791	if [[ $queue = testq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
792	then
793	queue_directive="#PBS -q $queue"
794	else
795	queue_directive=""
796	fi
797
798	if [[ $email_notification = none ]]
799	then
800	email_directive=""
801	else
802	email_directive="#PBS -M $email_notification"
803	fi
804
805	if [[ $numprocs != 0 ]]
806	then
807	cat > $job_to_send << %%END%%
808	#!/bin/bash
809	#PBS -N $job_name
810	#PBS -l walltime=$timestring
811	#PBS -l nodes=$nodes:ppn=${tasks_per_node}
812	#PBS -l naccesspolicy=$node_usage
813	#PBS -o $remote_dayfile
814	#PBS -j oe
815	$feature_directive
816	$queue_directive
817	$email_directive
818
819	. /usr/share/modules/init/bash
820	$module_calls
821
822	echo ld_library_path=\$LD_LIBRARY_PATH
823
824	%%END%%
825
826	else
827	cat > $job_to_send << %%END%%
828	#PBS -S /bin/bash
829	#PBS -N $job_name
830	#PBS -l walltime=$timestring
831	#PBS -l ncpus=1
832	#PBS -o $remote_dayfile
833	#PBS -j oe
834	$queue_directive
835	$email_directive
836
837	. /usr/share/modules/init/bash
838	$module_calls
839
840	%%END%%
841
842	fi
843
844	elif [[ $remote_host = lcxt4 ]]
845	then
846
847	if [[ $numprocs != 0 ]]
848	then
849	cat > $job_to_send << %%END%%
850	#!/bin/ksh
851	#PBS -S /bin/ksh
852	#PBS -N $job_name
853	#PBS -A geofysisk
854	#PBS -j oe
855	#PBS -l walltime=$timestring
856	#PBS -l mppwidth=${numprocs}
857	#PBS -l mppnppn=${tasks_per_node}
858	#PBS -m abe
859	#PBS -o $remote_dayfile
860	$email_directive
861
862	. /opt/modules/default/init/ksh
863	$module_calls
864
865	%%END%%
866
867	else
868	cat > $job_to_send << %%END%%
869	#!/bin/ksh
870	#PBS -S /bin/ksh
871	#PBS -N $job_name
872	#PBS -A geofysisk
873	#PBS -j oe
874	#PBS -l walltime=$timestring
875	#PBS -l ncpus=1
876	#PBS -l pmem=${memory}mb
877	#PBS -m abe
878	$email_directive
879	#PBS -o $remote_dayfile
880
881	. /opt/modules/default/init/ksh
882	$module_calls
883
884	%%END%%
885
886	fi
887
888	elif [[ $remote_host = lckyoto ]]
889	then
890
891	cat > $job_to_send << %%END%%
892	#!/bin/ksh
893	# @\$-o $remote_dayfile
894	# @\$-eo -oi
895	# @\$-lP 16
896	# @\$-lp 1
897	# @\$-lm 28gb -llm unlimited -ls unlimited
898	# @\$-q $queue
899	# @\$-Pvn abs_pack
900	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
901	#. /thin/local/etc/setprofile/intel-11.0.sh
902	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
903	. ~/.myprofile
904	#. /home2/t/t51254/palm/current_version/myprofile
905	#. /thin/apps/pgi/mpi.sh
906	#
907	env
908	#
909	set -x
910
911	%%END%%
912
913	elif [[ $remote_host = lcxt5m ]]
914	then
915
916	if [[ $numprocs != 0 ]]
917	then
918	cat > $job_to_send << %%END%%
919	#!/bin/ksh
920	#PBS -S /bin/ksh
921	#PBS -N $job_name
922	#PBS -j oe
923	#PBS -l walltime=$timestring
924	#PBS -l mppwidth=${numprocs}
925	#PBS -l mppnppn=${tasks_per_node}
926	#PBS -m abe
927	#PBS -o $remote_dayfile
928
929	. /opt/modules/default/init/ksh
930	$module_calls
931
932	%%END%%
933
934	else
935	cat > $job_to_send << %%END%%
936	#!/bin/ksh
937	#PBS -S /bin/ksh
938	#PBS -N $job_name
939	#PBS -j oe
940	#PBS -l walltime=$timestring
941	#PBS -l ncpus=1
942	#PBS -l pmem=${memory}mb
943	#PBS -m abe
944	#PBS -o $remote_dayfile
945
946	. /opt/modules/default/init/ksh
947	$module_calls
948
949	%%END%%
950
951	fi
952
953	elif [[ $remote_host = nech ]]
954	then
955
956	if (( nodes > 1 ))
957	then
958	cat > $job_to_send << %%END%%
959	#!/bin/ksh
960	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
961	#PBS -l ${qsubmem}=${Memory}gb
962	#PBS -b $nodes
963	#PBS -o $remote_dayfile
964	#PBS -N palm
965	#PBS -j o
966	#PBS -T mpisx
967
968	%%END%%
969
970	elif [[ $numprocs != 0 ]]
971	then
972	cat > $job_to_send << %%END%%
973	#!/bin/ksh
974	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
975	#PBS -l ${qsubmem}=${Memory}gb
976	#PBS -o $remote_dayfile
977	#PBS -N palm
978	#PBS -j o
979
980	%%END%%
981
982	else
983	cat > $job_to_send << %%END%%
984	#!/bin/ksh
985	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
986	#PBS -o $remote_dayfile
987	#PBS -j o
988
989	%%END%%
990
991	fi
992
993	elif [[ $remote_host = necriam ]]
994	then
995
996	if (( nodes > 1 ))
997	then
998	cat > $job_to_send << %%END%%
999	#!/bin/ksh
1000	#PBS -b $nodes
1001	#PBS -o $remote_dayfile
1002	#PBS -N $job_name
1003	#PBS -j o
1004	#PBS -v MPIPROGINV=YES
1005
1006	%%END%%
1007
1008	elif [[ $numprocs != 0 ]]
1009	then
1010	cat > $job_to_send << %%END%%
1011	#!/bin/ksh
1012	#PBS -q ${queue}
1013	#PBS -o $remote_dayfile
1014	#PBS -N $job_name
1015	#PBS -j o
1016	#PBS -v MPIPROGINV=YES
1017
1018	%%END%%
1019
1020	else
1021	cat > $job_to_send << %%END%%
1022	#!/bin/ksh
1023	#PBS -o $remote_dayfile
1024	#PBS -j o
1025
1026	%%END%%
1027
1028	fi
1029
1030	elif [[ $remote_host = lctit ]]
1031	then
1032	cat > $job_to_send << %%END%%
1033	#!/bin/bash
1034	#$ -S /bin/bash
1035	cd $job_catalog
1036	export PATH=$PALM_BIN:\$PATH
1037	echo \$PATH
1038
1039	%%END%%
1040
1041	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
1042	# submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
1043	submcom="$submcom -g $group_number -N $job_name -rt 4320 -sgeout $remote_dayfile -q $node_usage "
1044
1045	else
1046
1047	cat > $job_to_send << %%END%%
1048	# @\$-q ${queue}
1049	# @\$-l${qsubtime} $timestring
1050	# @\$-l${qsubmem} ${memory}mb
1051	# @\$-o $remote_dayfile
1052	# @\$-eo
1053
1054	%%END%%
1055
1056	fi
1057
1058
1059	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
1060	# BEI EXIT VERANLASSEN
1061	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
1062	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
1063	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1064	then
1065	echo "set +vx" >> $job_to_send
1066	echo "trap '" >> $job_to_send
1067	echo "set +vx" >> $job_to_send
1068	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
1069	then
1070	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
1071	then
1072	return_queue=c1
1073	elif [[ $remote_host = ibms ]]
1074	then
1075	return_queue=p_normal
1076	elif [[ $remote_host = ibmy ]]
1077	then
1078	return_queue=serial
1079	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
1080	then
1081	return_queue=serialq
1082	elif [[ $remote_host = lctit ]]
1083	then
1084	return_queue=sla3
1085	elif [[ $remote_host = necriam ]]
1086	then
1087	return_queue=SP
1088	else
1089	return_queue=unknown
1090	fi
1091
1092	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1093	then
1094
1095	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
1096	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
1097	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
1098	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
1099	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
1100	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1101	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
1102	if [[ $host != "ibmh" ]]
1103	then
1104	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
1105	fi
1106	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
1107	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
1108
1109	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
1110	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
1111
1112	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
1113	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
1114	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
1115
1116	elif [[ $remote_host = nech ]]
1117	then
1118	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1119	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1120	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1121	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1122	echo "#PBS -j o" >> $job_to_send
1123	echo " " >> $job_to_send
1124	echo "set -x" >> $job_to_send
1125	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1126	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1127	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1128	echo "%%END%%" >> $job_to_send
1129
1130	elif [[ $remote_host = necriam ]]
1131	then
1132	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1133	echo "#PBS -q $return_queue" >> $job_to_send
1134	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1135	echo "#PBS -j o" >> $job_to_send
1136	echo " " >> $job_to_send
1137	echo "set -x" >> $job_to_send
1138	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1139	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1140	echo "%%END%%" >> $job_to_send
1141
1142	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1143	then
1144	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1145	echo "#!/bin/bash" >> $job_to_send
1146	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1147	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1148	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1149	echo "#PBS -l feature=data" >> $job_to_send
1150	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1151	echo "#PBS -j oe" >> $job_to_send
1152	echo " " >> $job_to_send
1153	echo ". /usr/share/modules/init/bash" >> $job_to_send
1154	echo "set -x" >> $job_to_send
1155	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1156	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1157	echo "%%END%%" >> $job_to_send
1158
1159	elif [[ $remote_host = lctit ]]
1160	then
1161	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1162	echo "set -x" >> $job_to_send
1163	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
1164	echo "cd $job_catalog" >> $job_to_send
1165	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1166	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1167	echo "%%END%%" >> $job_to_send
1168
1169	else
1170
1171	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
1172	echo "# @\\\$-q $return_queue" >> $job_to_send
1173	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1174	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1175	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1176	then
1177	echo "# @\$-l mpp_p=0" >> $job_to_send
1178	fi
1179	echo '# @\$-lF 10mb' >> $job_to_send
1180	# echo '# @\$-o /dev/null' >> $job_to_send
1181	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1182	echo '# @\\\$-eo' >> $job_to_send
1183	echo " " >> $job_to_send
1184	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1185	then
1186	echo "set +vx" >> $job_to_send
1187	echo ". .profile" >> $job_to_send
1188	fi
1189	echo "set -x" >> $job_to_send
1190	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1191	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1192	echo "%%END%%" >> $job_to_send
1193	fi
1194
1195	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1196	then
1197	echo "llsubmit scpjob.$kennung" >> $job_to_send
1198	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
1199	then
1200	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1201	echo "msub scpjob.$kennung" >> $job_to_send
1202	elif [[ $remote_host = lctit ]]
1203	then
1204	echo "chmod u+x scpjob.$kennung" >> $job_to_send
1205	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
1206	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
1207	echo "sleep 10" >> $job_to_send
1208	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1209	then
1210	echo "qsub -J n scpjob.$kennung" >> $job_to_send
1211	elif [[ $remote_host = t3es ]]
1212	then
1213	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
1214	else
1215	echo "qsub scpjob.$kennung" >> $job_to_send
1216	fi
1217	echo "rm scpjob.$kennung" >> $job_to_send
1218	if [[ $remote_host = nech ]]
1219	then
1220	echo "cd -" >> $job_to_send
1221	fi
1222	else
1223	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1224	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1225	fi
1226	echo "set -x" >> $job_to_send
1227	echo " ' exit" >> $job_to_send
1228	echo "set -x" >> $job_to_send
1229	fi
1230
1231
1232
1233	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
1234	cat $file_to_send >> $job_to_send
1235
1236	if [[ $remote_host = ibm ]]
1237	then
1238	echo " " >> $job_to_send
1239	echo "exit" >> $job_to_send
1240	fi
1241	if [[ $remote_host = lctit ]]
1242	then
1243	echo " " >> $job_to_send
1244	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1245	fi
1246
1247
1248
1249	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
1250	if [[ -z $remote_user ]]
1251	then
1252	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
1253	then
1254	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
1255	fi
1256	fi
1257
1258
1259
1260	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
1261	if [[ $no_submit = false ]]
1262	then
1263	if [[ $remote_host != $local_host ]]
1264	then
1265	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1266	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
1267	then
1268	job_catalog_save=$job_catalog
1269	job_catalog=job_queue
1270	elif [[ $remote_host = nech ]]
1271	then
1272	job_catalog_save=$job_catalog
1273	job_catalog=/hpf/b/${remote_user}/job_queue
1274	fi
1275	if [[ $local_host = decalpha ]]
1276	then
1277	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
1278	# PASSWORT AB
1279	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1280	elif [[ $remote_host = nech ]]
1281	then
1282	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
1283	# TRANSFERIERT WERDEN
1284	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1285	else
1286	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1287	fi
1288	if [[ $? = 1 ]]
1289	then
1290	locat=scp; exit
1291	fi
1292	if [[ $remote_host = ibms ]]
1293	then
1294	job_catalog=$job_catalog_save
1295	fi
1296	[[ $verify = true ]] && printf "\n >>> finished\n"
1297	else
1298	eval job_catalog=$job_catalog
1299	cp $job_to_send ${job_catalog}/$job_on_remhost
1300	fi
1301
1302
1303
1304	# NQS- BZW. LOADLEVELER-JOB STARTEN
1305	if [[ $remote_host != $local_host ]]
1306	then
1307	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1308	if [[ $remote_host != lctit ]]
1309	then
1310	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
1311	then
1312	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
1313	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
1314	else
1315	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1316	fi
1317	else
1318	# TIT ERLAUBT NUR DIE AUSFï¿œHRUNG GANZ BESTIMMTER KOMMANDOS
1319	# MIT SSH, DESHALB AUFRUF PER PIPE
1320	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
1321	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
1322	echo "first try" > send_protocol
1323	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
1324	do
1325	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
1326	then
1327	printf "\n trying to submit job to TIT cluster..."
1328	else
1329	printf "\n +++ failed ... trying to submit again ..."
1330	fi
1331	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
1332	cat send_protocol
1333	done
1334	sleep 10
1335	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
1336	echo "$submcom $job_on_remhost"
1337	rm send_protocol
1338	fi
1339
1340	[[ $verify = true ]] && printf " >>> o.k.\n"
1341	else
1342	cd $job_catalog
1343	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
1344	then
1345	eval $submcom $job_on_remhost
1346	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxt4 \|\| $localhost = lck ]]
1347	then
1348	eval $submcom $job_on_remhost
1349	echo "$submcom $job_on_remhost"
1350	chmod u+x $job_on_remhost
1351
1352	elif [[ $(echo $local_host \| cut -c1-5) = lcsgi ]]
1353	then
1354	eval $submcom $job_on_remhost
1355	elif [[ $local_host = nech ]]
1356	then
1357	if [[ $queue = default ]]
1358	then
1359	eval $submcom $job_on_remhost
1360	else
1361	eval $submcom -q $queue $job_on_remhost
1362	fi
1363	else
1364	qsub $job_on_remhost
1365	fi
1366	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
1367	[[ $local_host != lctit ]] && rm $job_on_remhost
1368	cd - > /dev/null
1369	fi
1370	fi
1371
1372
1373
1374	# ABSCHLUSSARBEITEN
1375
1376	if [[ $no_submit = false ]]
1377	then
1378	rm $job_to_send
1379	fi
1380	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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source: palm/trunk/SCRIPTS/subjob @ 516

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