#!/bin/ksh
# subjob - script for automatic generation and submission of batch-job files
# for various batch queuing systems
#--------------------------------------------------------------------------------#
# This file is part of PALM.
#
# PALM is free software: you can redistribute it and/or modify it under the terms
# of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
#
# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with
# PALM. If not, see .
#
# Copyright 1997-2012 Leibniz University Hannover
#--------------------------------------------------------------------------------#
#
# Current revisions:
# ------------------
#
#
# Former revisions:
# -----------------
# $Id: subjob 1261 2013-12-04 12:48:57Z raasch $
#
# 1260 2013-12-04 12:48:04Z raasch
# jaboticaba admitted
#
# 1255 2013-11-07 14:43:35Z raasch
# further adjustments for lccrayb
#
# 1224 2013-09-16 07:27:23Z raasch
# first adjustments for lccrayb
#
# 1202 2013-07-10 16:22:07Z witha
# adjustments for Forwind cluster (lcflow)
#
# 1199 2013-07-05 14:52:22Z raasch
# adjustments for CSC Helsinki (lccrayf)
#
# use of cluster/express queue enabled (ibmh)
# vinessa added (imuk)
#
# 1103 2013-02-20 02:15:53Z raasch
# bash compatibility adjustments (usage of OPTIND, output formatting with printf
# instead typeset -L/R),
# further adjustments for lckyuh
#
# 2013-02-10 01:47:43Z raasch
# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
# and for Forwind cluster (lcflow)
#
# 1094 2013-02-03 01:52:12Z raasch
# new option -P for explicit setting of ssh/scp port,
# decalpha parts (yonsei) removed
#
# 2013-02-02 07:06:13Z raasch
# adjustments for Kyushu-University computing center (lckyut - tatara)
# old changelog messages removed
#
# 1046 2012-11-09 14:38:45Z maronga
# code put under GPL (PALM 3.9)
#
# 08/07/94 - Siggi - first version finished
# 29/06/94 - Siggi - script development started
#--------------------------------------------------------------------------------#
# subjob - script for automatic generation and submission of batch-job files
# for various batch queuing systems
#--------------------------------------------------------------------------------#
# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
delete_dayfile=false
email_notification=none
group_number=none
locat=normal
no_default_queue=none
no_submit=false
job_catalog="~/job_queue"
job_name=none
local_user=$LOGNAME
node_usage=shared
numprocs=0
punkte="..........................................................."
submcom=qsub
queue=default
remote_host=none
remote_user=""
verify=true
typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
# FEHLERBEHANDLUNG
# BEI EXIT:
trap 'if [[ $locat != normal ]]
then
case $locat in
(option) printf "\n --> available optios can be displayed"
printf " by typing:"
printf "\n \"subjob ?\" \n";;
(ftpcopy|parameter|scp|verify) printf "\n";;
(*) printf "\n +++ unknown error"
printf "\n please inform S. Raasch!\n"
esac
[[ -f $job_to_send ]] && rm $job_to_send
printf "\n\n+++ SUBJOB killed \n\n"
fi' exit
# BEI TERMINAL-BREAK:
trap '[[ -f $job_to_send ]] && rm $job_to_send
printf "\n\n+++ SUBJOB killed \n\n"
exit
' 2
# LOKALEN HOSTNAMEN FESTSTELLEN
local_host=$(hostname)
# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
# UEBERHAUPT ZULAESSIG IST
# Note: One of the entries for "lck" or "lckordi" always has to be
# comment out, because the hostname (node*) is same for both machines
case $local_host in
(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
(atmos) local_addres=172.20.25.35; local_host=lcide;;
(austru) local_addres=130.75.105.128; local_host=lcmuk;;
(autan) local_addres=130.75.105.57; local_host=lcmuk;;
(bora) local_addres=130.75.105.103; local_host=lcmuk;;
(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
(b01*|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
(blogin*|bxc*) local_addres=130.73.233.1; local_host=lccrayb;;
(breva) local_addres=130.75.105.98; local_host=lcmuk;;
(buran) local_addres=130.75.105.58; local_host=lcmuk;;
(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
(climate*) local_addres=165.132.26.68; local_host=lcyon;;
(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
(cs*) local_addres=136.172.44.131; local_host=nech;;
(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
(flow01) local_addres=10.141.255.71; local_host=lcflow;;
(flow02) local_addres=10.141.255.72; local_host=lcflow;;
(node*) local_addres=165.132.26.61 local_host=lck;;
# (node*) local_addres=210.219.61.8 local_host=lckordi;;
(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
(h01*|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
(sno) local_addres=130.75.105.113; local_host=lcmuk;;
(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
(login*) local_addres=118.128.66.223; local_host=lckiaps;;
(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
(meller) local_addres=134.106.74.155; local_host=lcfor;;
(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
(nobel*) local_addres=150.183.5.101; local_host=ibms;;
(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
(pingui) local_addres=134.106.74.118; local_host=lcfor;;
(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
(rte*) local_addres=133.5.185.60; local_host=lcrte;;
(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
(solano) local_addres=130.75.105.110; local_host=lcmuk;;
(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
(sun1|sun2) local_addres=130.75.6.1; local_host=unics;;
(sx-*) local_addres=172.16.1.131; local_host=necriam;;
(t2a*) local_addres=10.1.6.165; local_host=lctit;;
(urban*) local_addres=147.46.30.151 local_host=lcsb;;
(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
(*) printf "\n +++ \"$local_host\" unknown";
printf "\n please contact the PALM group at IMUK";
locat=parameter; exit;;
esac
# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
remote_host=$local_host
# PROZEDUROPTIONEN EINLESEN
while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
do
case $option in
(c) job_catalog=$OPTARG;;
(d) delete_dayfile=true;;
(D) no_submit=true;;
(e) email_notification=$OPTARG;;
(g) group_number=$OPTARG;;
(h) remote_host=$OPTARG;;
(m) memory=$OPTARG;;
(n) job_name=$OPTARG;;
(N) node_usage=$OPTARG;;
(O) threads_per_task=$OPTARG;;
(P) scp_port=$OPTARG;;
(q) no_default_queue=$OPTARG;;
(t) cputime=$OPTARG;;
(T) tasks_per_node=$OPTARG;;
(u) remote_user=$OPTARG;;
(v) verify=false;;
(X) numprocs=$OPTARG;;
(\?) printf "\n +++ Option $OPTARG unknown \n";
locat=option; exit;;
esac
done
# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
(( to_shift = $OPTIND - 1 ))
shift $to_shift; file_to_send=$1
# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
if [ "$1" = "?" ]
then
(printf "\n *** subjob can be called as follows:\n"
printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v \n"
printf "\n Description of available options:\n"
printf "\n Option Description Default-Value"
printf "\n -c job-input- and output-catalog ~/job_queue"
printf "\n -d no job-protocol will be created ---"
printf "\n -D only the job-file will be created ---"
printf "\n -h execution host, available hosts: $remote_host"
printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
printf "\n lckiaps, lctit, nech, necriam, unics"
printf "\n -m memory demand per process in MByte ---"
printf "\n -n jobname "
printf "\n -O threads per task (for OpenMP usage) 1"
printf "\n -P ssh/scp port default port"
printf "\n -q job-queue to be used default"
printf "\n -t allowed cpu-time in seconds ---"
printf "\n -T tasks per node (on parallel hosts) ---"
printf "\n -u username on execution host from .netrc"
printf "\n -v no prompt for confirmation ---"
printf "\n -X # of processors (on parallel hosts) 1"
printf "\n "
printf "\n The only possible positional parameter is :"
printf "\n The complete NQS-job must be provided here."
printf "\n =? creates this outline\n\n") | more
exit
fi
# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
if [[ "$file_to_send" = "" ]]
then
printf "\n +++ job-file missing"
locat=parameter; exit
else
if [[ -f $file_to_send ]]
then
true
else
printf "\n +++ job-file: "
printf "\n $file_to_send"
printf "\n does not exist"
locat=parameter; exit
fi
fi
# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
if [[ $job_name = none ]]
then
job_name=$file_to_send
fi
if [[ $(echo $job_name | grep -c "/") != 0 ]]
then
printf "\n +++ job-file name: "
printf "\n $job_name"
printf "\n must not contain \"/\"-characters"
locat=parameter; exit
fi
# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
# ODER WENN HOST NICHT ANGEGEBEN WURDE
if [[ $remote_host = none ]]
then
printf "\n +++ host missing"
locat=option; exit
else
case $remote_host in
(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/torque/4.2.4.1/bin/qsub;;
(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
(*) printf "\n +++ hostname \"$remote_host\" not allowed";
locat=parameter; exit;;
esac
fi
# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
if [[ $no_default_queue != none ]]
then
error=false
ndq=$no_default_queue
case $remote_host in
(ibm) case $ndq in
(p690_express|p690_standard|p690_long) error=false;;
(*) error=true;;
esac;;
(ibmh) case $ndq in
(cluster|express) error=false;;
(*) error=true;;
esac;;
(ibmkisti) case $ndq in
(class.32plus|class.1-2|class.2-32) error=false;;
(*) error=true;;
esac;;
(ibmku) case $ndq in
(sdbg1|sdbg2|sdbg4|s4|s16|s32|s32-s) error=false;;
(*) error=true;;
esac;;
(ibms) case $ndq in
(express|normal|p_express|p_normal|p_normal_1.3|p_normal_1.7|grand) error=false;;
(*) error=true;;
esac;;
(ibmy) case $ndq in
(parallel) error=false;;
(*) error=true;;
esac;;
(lccrayb) case $ndq in
(mpp1q|mpp1testq|testq) error=false;;
(*) error=true;;
esac;;
(lccrayf) case $ndq in
(usup|test*|small|large) error=false;;
(*) error=true;;
esac;;
(lcflow) case $ndq in
(cfd_lom_long.q|cfd_him_long.q|cfd_lom_serl.q|cfd_lom_shrt.q|cfd_him_shrt.q) error=false;;
(*) error=true;;
esac;;
(lckiaps) case $ndq in
(express|normal) error=false;;
(*) error=true;;
esac;;
(lckyoto) case $ndq in
(eh|ph) error=false;;
(*) error=true;;
esac;;
(lckyuh) case $ndq in
(fx-dbg|fx-single|fx-small|fx-middle|fx-large) error=false;;
(*) error=true;;
esac;;
(lckyut) case $ndq in
(cx-dbg|cx-single|cx-small|cx-middle|cx-large) error=false;;
(*) error=true;;
esac;;
(lcsgib|lcsgih) case $ndq in
(testq|serialq|smallq|mediumq|bigq|workq|dataq|permq|special1q) error=false;;
(*) error=true;;
esac;;
(lctit) case $ndq in
(G|L128|L256|L512H|S|S96|V) error=false;;
(*) error=true;;
esac;;
(t3eb) case $ndq in
(berte|p50|p100|p392|forfree|p25himem) error=false;;
(*) error=true;;
esac;;
(necriam) case $ndq in
(SP|SS|P6) error=false;;
(*) error=true;;
esac;;
(t3eh) case $ndq in
(para_t3e|em|k|l|lm|comp_t3e|c|p|ht) error=false;;
(*) error=true;;
esac;;
(t3ej2|t3ej5) case $ndq in
(low|normal|high) error=false;;
(*) error=true;;
esac;;
(t3es) case $ndq in
(batch|serial-4|pe4|p48|pe16|pe32|pe64|pe128) error=false;;
(*) error=true;;
esac;;
(unics) case $ndq in
(unics|ht) error=false;;
(*) error=true;;
esac;;
esac
if [[ $error = true ]]
then
printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
locat=parameter; exit
else
queue=$no_default_queue
fi
fi
# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
# AUFTEILEN
done=false
while [[ $done = false ]]
do
if (( $cputime <= 0 ))
then
printf "\n +++ wrong cpu-time or cpu-time missing"
printf "\n >>> Please type cpu-time in seconds as INTEGER:"
printf "\n >>> "
read cputime 1>/dev/null 2>&1
else
done=true
fi
done
if [[ $remote_host = nech ]]
then
if (( tasks_per_node != 0 ))
then
(( cputime = cputime * tasks_per_node ))
elif [[ $numprocs != 0 ]]
then
(( cputime = cputime * numprocs ))
fi
fi
(( stunden = cputime / 3600 ))
(( resttime = cputime - stunden * 3600 ))
(( minuten = resttime / 60 ))
(( sekunden = resttime - minuten * 60 ))
timestring=${stunden}:${minuten}:${sekunden}
# PRUEFEN DER KERNSPEICHERANFORDERUNG
done=false
while [[ $done = false ]]
do
if (( memory <= 0 ))
then
printf "\n +++ wrong memory demand or memory demand missing"
printf "\n >>> Please type memory in MByte per process as INTEGER:"
printf "\n >>> "
read memory 1>/dev/null 2>&1
else
done=true
fi
done
if [[ $remote_host = nech || $remote_host = necriam ]]
then
if (( tasks_per_node != 0 ))
then
(( Memory = memory * tasks_per_node / 1000 ))
elif [[ $numprocs != 0 ]]
then
(( Memory = memory * numprocs / 1000 ))
else
(( Memory = memory / 1000 ))
fi
elif [[ $remote_host = lctit ]]
then
(( Memory = memory * tasks_per_node / 1000 ))
fi
# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
if [[ $(echo $remote_host | cut -c1-3) = ibm ]]
then
(( memory = memory * threads_per_task ))
fi
# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
if (( tasks_per_node != 0 ))
then
(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
fi
# Calculate number of processes per node
(( processes_per_node = tasks_per_node * threads_per_task ))
# Calculate number of MPI tasks
(( mpi_tasks = numprocs / threads_per_task ))
# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
if [[ "$scp_port" != "" ]]
then
PORTOPT="-P $scp_port"
SSH_PORTOPT="-p $scp_port"
fi
# HEADER-AUSGABE
if [[ $verify = true ]]
then
printf "\n\n"
printf "#--------------------------------------------------------------# \n"
spalte1=SUBJOB;spalte2=$(date)
printf "| %-20s%40s | \n" "$spalte1" "$spalte2"
printf "| | \n"
printf "| values of parameters/options: | \n"
spalte1=$(echo local_host$punkte | cut -c-20)
spalte2=$punkte$local_host
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
spalte1=$(echo remote_host$punkte | cut -c-20)
spalte2=$punkte$remote_host
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
spalte1=$(echo queue$punkte | cut -c-20)
spalte2=$punkte$queue
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
spalte1=$(echo memory$punkte | cut -c-20)
spalte2="$punkte$memory mb"
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
spalte1=$(echo cputime$punkte | cut -c-20)
spalte2="$punkte$cputime sec"
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
spalte1=$(echo job_name$punkte | cut -c-20)
spalte2="$punkte$job_name"
printf "| %-20s%40s | \n" "$spalte1" "${spalte2: -40}"
printf "#--------------------------------------------------------------# \n\n"
# KONTROLLABFRAGE, OB ALLES O.K.
antwort="dummy"
while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
do
read antwort?" >>> continue (y/n) ? "
done
if [[ $antwort = n || $antwort = N ]]
then
locat=verify; exit
fi
printf "\n"
fi
# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
kennung=$RANDOM
job_on_remhost=${job_name}_${kennung}_$local_host
job_to_send=job_to_send_$kennung
if [[ $delete_dayfile = false ]]
then
remote_dayfile=${local_host}_${job_name}_result_$kennung
local_dayfile=${remote_host}_${job_name}
else
remote_dayfile=/dev/null
fi
# Generate the batch job scripts (qsub/msub/LoadLeveler)
if [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs != 0 ]]
then
# General LoadLeveler settings
execute_in_shell="#!/bin/ksh"
use_shell="# @ shell = /bin/ksh"
consumable_memory="ConsumableMemory($memory mb)"
class="# @ class = $queue"
environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
network_to_use="# @ network.mpi = sn_all,shared,us"
data_limit="# @ data_limit = 1.76gb"
image_size="# @ image_size = 50"
wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
if [[ $email_notification = none ]]
then
notify_user=""
else
notify_user="# @ notify_user = $email_notification"
if [[ $delete_dayfile = true ]]
then
notification='# @ notification = never'
fi
fi
if [[ $remote_host = ibmh ]]
then
data_limit=""
network_to_use=""
class="# @ class = $queue"
environment=""
rset="# @ rset = RSET_MCM_AFFINITY"
task_affinity="# @ task_affinity = core(1)"
elif [[ $remote_host = ibmkisti ]]
then
network_to_use="# @ network.MPI = sn_all,shared,US"
wall_clock_limit="# @ wall_clock_limit = $timestring"
if [[ $threads_per_task = 1 ]]
then
rset="# @ rset = RSET_MCM_AFFINITY"
mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
fi
environment=""
use_shell=""
data_limit=""
image_size=""
elif [[ $remote_host = ibmku ]]
then
execute_in_shell="#!/usr/bin/ksh"
use_shell="# @ shell = /usr/bin/ksh"
consumable_memory=""
environment=""
network_to_use="# @ network.mpi = sn_all,shared,us"
data_limit=""
image_size=""
elif [[ $remote_host = ibms ]]
then
network_to_use="# @ network.mpi = csss,shared,us"
elif [[ $remote_host = ibmy ]]
then
consumable_memory=""
network_to_use=""
fi
cat > $job_to_send << %%END%%
$execute_in_shell
$use_shell
# @ job_type = parallel
# @ job_name = $job_name
# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
# @ output = $remote_dayfile
# @ error = $remote_dayfile
$wall_clock_limit
$image_size
$class
$environment
$network_to_use
$data_limit
$rset
$mcm_affinity_options
$task_affinity
$notification
$notify_user
%%END%%
if (( nodes > 0 ))
then
if [[ $remote_host != ibmkisti ]]
then
cat >> $job_to_send << %%END%%
# @ node = $nodes
# @ tasks_per_node = $processes_per_node
# @ node_usage = $node_usage
# @ queue
%%END%%
else
cat >> $job_to_send << %%END%%
# @ total_tasks = $mpi_tasks
# @ blocking = unlimited
# @ queue
%%END%%
fi
else
if [[ $remote_host != ibmy ]]
then
cat >> $job_to_send << %%END%%
# @ blocking = unlimited
# @ total_tasks = $numprocs
# @ node_usage = $node_usage
# @ queue
%%END%%
else
cat >> $job_to_send << %%END%%
# @ node = 1
# @ total_tasks = $numprocs
# @ queue
%%END%%
fi
fi
# workaround because of silly job filter on ibmkisti
if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
then
echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
fi
elif [[ $(echo $remote_host | cut -c1-3) = ibm && $numprocs = 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
# @ job_type = serial
# @ node_usage = $node_usage
# @ job_name = palm
# @ wall_clock_limit = ${timestring},$timestring
# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
# @ output = $remote_dayfile
# @ error = $remote_dayfile
$class
$notification
# @ queue
%%END%%
elif [[ $remote_host = lccrayb ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/bash
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l mppwidth=$numprocs
#PBS -l mppnppn=$processes_per_node
#PBS -o $remote_dayfile
#PBS -j oe
#PBS -q $queue
$module_calls
%%END%%
else
continue
fi
elif [[ $remote_host = lccrayf ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/bash -l
#SBATCH -J $job_name
#SBATCH -t $timestring
#SBATCH -N $nodes
#SBATCH --ntasks-per-node=$processes_per_node
#SBATCH -p $queue
#SBATCH -o $remote_dayfile
#SBATCH -e $remote_dayfile
$init_cmds
$module_calls
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/bash -l
#SBATCH -J $job_name
#SBATCH -t $timestring
#SBATCH -l ncpus=1
#SBATCH -l pmem=${memory}mb
#SBATCH -m abe
#SBATCH -o $remote_dayfile
#SBATCH -e $remote_dayfile
$init_cmds
$module_calls
%%END%%
fi
elif [[ $remote_host = lcfimm ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -A $project_account
#PBS -l walltime=$timestring
#PBS -l nodes=${nodes}:ppn=$processes_per_node
#PBS -l pmem=${memory}mb
#PBS -m abe
#PBS -o $remote_dayfile
#PBS -j oe
mpd &
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -A $project_account
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -m abe
#PBS -o $remote_dayfile
#PBS -j oe
%%END%%
fi
elif [[ $remote_host = lcflow ]]
then
if [ $memory -gt 1800 ]; then
use_himem=""
else
use_himem="#"
fi
if [[ $numprocs != 0 ]]
then
pe_set="#$ -pe impi41 $numprocs"
else
pe_set="#$ -pe impi41 1"
fi
if [[ $queue = default ]]
then
queue_set=""
else
queue_set="#$ -q $queue"
fi
[[ "$disc_space" = "" ]] && disc_space=50
cat > $job_to_send << %%END%%
#!/bin/bash
#$ -S /bin/bash
#$ -N $job_name
#$ -cwd
#$ -l h_rt=$timestring
#$ -l h_vmem=${memory}M
#$ -o $remote_dayfile
#$ -j y
$pe_set
#$ -R y
${use_himem}#$ -l highmem=true
#$ -l h_fsize=${disc_space}G
$queue_set
%%END%%
elif [[ $remote_host = lck || $remote_host = lckordi || $remote_host = lcsb ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=$numprocs
#PBS -l pmem=${memory}mb
#PBS -o $remote_dayfile
#PBS -l nodes=$nodes:ppn=${processes_per_node}
#PBS -j oe
mpd &
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -o $remote_dayfile
#PBS -j oe
%%END%%
fi
elif [[ $remote_host = lckiaps ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l select=1:ncpus=$numprocs
#PBS -l pmem=${memory}mb
#PBS -q $queue
#PBS -o $remote_dayfile
#PBS -j oe
#PBS -V
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -o $remote_dayfile
#PBS -j oe
%%END%%
fi
elif [[ $remote_host = lcyon ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=$numprocs
#PBS -l pmem=${memory}mb
#PBS -o $remote_dayfile
#PBS -j oe
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -o $remote_dayfile
#PBS -j oe
%%END%%
fi
elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]]
then
if [[ "$sgi_feature" != "" ]]
then
feature_directive="#PBS -l feature=$sgi_feature"
else
feature_directive=""
fi
if [[ $queue = dataq || $queue = permq ]]
then
feature_directive="#PBS -l feature=data"
fi
if [[ $queue = testq || $queue = mediumq || $queue = bigq || $queue = workq || $queue = dataq || $queue = permq || $queue = serialq || $queue = special1q ]]
then
queue_directive="#PBS -q $queue"
else
queue_directive=""
fi
if [[ $email_notification = none ]]
then
email_directive=""
else
email_directive="#PBS -M $email_notification"
fi
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/bash
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l nodes=$nodes:ppn=${processes_per_node}
#PBS -l naccesspolicy=$node_usage
#PBS -o $remote_dayfile
#PBS -j oe
$feature_directive
$queue_directive
$email_directive
eval \`/sw/swdist/bin/modulesinit\`
#. /usr/share/modules/init/bash
$init_cmds
$module_calls
echo ld_library_path=\$LD_LIBRARY_PATH
%%END%%
else
cat > $job_to_send << %%END%%
#PBS -S /bin/bash
#PBS -N $job_name
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -o $remote_dayfile
#PBS -j oe
$queue_directive
$email_directive
eval \`/sw/swdist/bin/modulesinit\`
#. /usr/share/modules/init/bash
$init_cmds
$module_calls
%%END%%
fi
elif [[ $remote_host = lcxe6 ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -S /bin/ksh
#PBS -N $job_name
#PBS -A $project_account
#PBS -j oe
#PBS -l walltime=$timestring
#PBS -l mppwidth=${numprocs}
#PBS -l mppnppn=${processes_per_node}
#PBS -m abe
#PBS -o $remote_dayfile
$email_directive
$init_cmds
$module_calls
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -S /bin/ksh
#PBS -N $job_name
#PBS -A $project_account
#PBS -j oe
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -m abe
$email_directive
#PBS -o $remote_dayfile
$init_cmds
$module_calls
%%END%%
fi
elif [[ $remote_host = lckyoto ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
# @\$-o $remote_dayfile
# @\$-eo -oi
# @\$-lP 16
# @\$-lp 1
# @\$-lm 28gb -llm unlimited -ls unlimited
# @\$-q $queue
# @\$-Pvn abs_pack
##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
#. /thin/local/etc/setprofile/intel-11.0.sh
#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
. ~/.myprofile
#. /home2/t/t51254/palm/current_version/myprofile
#. /thin/apps/pgi/mpi.sh
#
env
#
set -x
%%END%%
elif [[ $remote_host = lcxt5m ]]
then
if [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -S /bin/ksh
#PBS -N $job_name
#PBS -j oe
#PBS -l walltime=$timestring
#PBS -l mppwidth=${numprocs}
#PBS -l mppnppn=${processes_per_node}
#PBS -m abe
#PBS -o $remote_dayfile
$init_cmds
$module_calls
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -S /bin/ksh
#PBS -N $job_name
#PBS -j oe
#PBS -l walltime=$timestring
#PBS -l ncpus=1
#PBS -l pmem=${memory}mb
#PBS -m abe
#PBS -o $remote_dayfile
$init_cmds
$module_calls
%%END%%
fi
elif [[ $remote_host = lckyuh ]]
then
cat > $job_to_send << %%END%%
#!/bin/bash
#PJM -L "rscgrp=$queue"
#PJM -L "node=$nodes"
#PJM --mpi "proc=$numprocs"
#PJM -L "elapse=$timestring"
#PJM -o $remote_dayfile
#PJM -j
#PJM -X
#PJM --no-stging
export LANG=en_US.UTF-8
%%END%%
elif [[ $remote_host = lckyut ]]
then
cat > $job_to_send << %%END%%
#!/bin/bash
#PJM -L "rscgrp=$queue"
#PJM -L "vnode=$numprocs"
#PJM -L "vnode-core=1"
#PJM -L "elapse=$timestring"
#PJM --mpi proc=$numprocs
#PJM -o $remote_dayfile
#PJM -j
#PJM -X
#PJM --no-stging
export LANG=en_US.UTF-8
%%END%%
elif [[ $remote_host = nech ]]
then
if (( nodes > 1 ))
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
#PBS -l ${qsubmem}=${Memory}gb
#PBS -b $nodes
#PBS -o $remote_dayfile
#PBS -N palm
#PBS -j o
#PBS -T mpisx
%%END%%
elif [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
#PBS -l ${qsubmem}=${Memory}gb
#PBS -o $remote_dayfile
#PBS -N palm
#PBS -j o
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
#PBS -o $remote_dayfile
#PBS -j o
%%END%%
fi
elif [[ $remote_host = necriam ]]
then
if (( nodes > 1 ))
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -b $nodes
#PBS -o $remote_dayfile
#PBS -N $job_name
#PBS -j o
#PBS -v MPIPROGINV=YES
%%END%%
elif [[ $numprocs != 0 ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -q ${queue}
#PBS -o $remote_dayfile
#PBS -N $job_name
#PBS -j o
#PBS -v MPIPROGINV=YES
%%END%%
else
cat > $job_to_send << %%END%%
#!/bin/ksh
#PBS -o $remote_dayfile
#PBS -j o
%%END%%
fi
elif [[ $remote_host = lctit ]]
then
cat > $job_to_send << %%END%%
#!/bin/ksh
$init_cmds
$module_calls
%%END%%
# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
if [[ $tasks_per_node != $processes_per_node ]]
then
submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
else
submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
fi
else
cat > $job_to_send << %%END%%
# @\$-q ${queue}
# @\$-l${qsubtime} $timestring
# @\$-l${qsubmem} ${memory}mb
# @\$-o $remote_dayfile
# @\$-eo
%%END%%
fi
# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
# BEI EXIT VERANLASSEN
# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
if [[ $delete_dayfile = false && $remote_host != $local_host ]]
then
echo "set +vx" >> $job_to_send
echo "trap '" >> $job_to_send
echo "set +vx" >> $job_to_send
if [[ $(echo $remote_host | cut -c1-3) = ibm || $remote_host = lccrayb || $(echo $remote_host | cut -c1-5) = lcsgi || $(echo $remote_host | cut -c1-3) = nec || $remote_host = lcflow || $remote_host = lckiaps || $remote_host = lckyu* ]]
then
if [[ $remote_host = ibmh ]]
then
return_queue=c1
elif [[ $remote_host = ibmkisti ]]
then
return_queue=class.1-2
elif [[ $remote_host = ibmku ]]
then
return_queue=sdbg2
elif [[ $remote_host = ibms ]]
then
return_queue=p_normal
elif [[ $remote_host = ibmy ]]
then
return_queue=serial
elif [[ $remote_host = lcsgih || $remote_host = lcsgib ]]
then
return_queue=serialq
elif [[ $remote_host = necriam ]]
then
return_queue=SP
elif [[ $remote_host = lccrayb ]]
then
return_queue=dataq
elif [[ $remote_host = lckiaps ]]
then
return_queue=express
elif [[ $remote_host = lckyuh ]]
then
return_queue=cx-single
elif [[ $remote_host = lckyut ]]
then
return_queue=cx-single
else
return_queue=unknown
fi
if [[ $(echo $remote_host | cut -c1-3) = ibm ]]
then
if [[ $remote_host = ibmku ]]
then
echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
else
echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
fi
echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
if [[ $host != "ibmh" ]]
then
echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
fi
echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
if [[ $remote_host = ibmku ]]
then
echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
fi
echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = nech ]]
then
echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
echo "#PBS -j o" >> $job_to_send
echo " " >> $job_to_send
echo "set -x" >> $job_to_send
echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $remote_host = necriam ]]
then
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#PBS -q $return_queue" >> $job_to_send
echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
echo "#PBS -j o" >> $job_to_send
echo " " >> $job_to_send
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $remote_host = lckyuh ]]
then
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#!/bin/bash" >> $job_to_send
echo "#PJM -L \"node=1\"" >> $job_to_send
echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
echo "#PJM --no-stging" >> $job_to_send
echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
echo "#PJM -j" >> $job_to_send
echo " " >> $job_to_send
echo "export LANG=en_US.UTF-8" >> $job_to_send
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $remote_host = lckyut ]]
then
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#!/bin/bash" >> $job_to_send
echo "#PJM -L \"vnode=1\"" >> $job_to_send
echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
echo "#PJM --no-stging" >> $job_to_send
echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
echo "#PJM -j" >> $job_to_send
echo " " >> $job_to_send
echo "export LANG=en_US.UTF-8" >> $job_to_send
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]]
then
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#!/bin/bash" >> $job_to_send
echo "#PBS -N job_protocol_transfer" >> $job_to_send
echo "#PBS -l walltime=00:30:00" >> $job_to_send
echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
echo "#PBS -l feature=data" >> $job_to_send
echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
echo "#PBS -j oe" >> $job_to_send
echo " " >> $job_to_send
echo ". /usr/share/modules/init/bash" >> $job_to_send
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $remote_host = lccrayb ]]
then
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "#!/bin/bash" >> $job_to_send
echo "#PBS -N job_protocol_transfer" >> $job_to_send
echo "#PBS -l walltime=00:30:00" >> $job_to_send
echo "#PBS -l mppwidth=1" >> $job_to_send
echo "#PBS -l mppnppn=1" >> $job_to_send
echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
echo "#PBS -j oe" >> $job_to_send
echo " " >> $job_to_send
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
elif [[ $remote_host = lcflow ]]
then
echo "cat > scpjob.${kennung}.tmp << %%END%%" >> $job_to_send
echo "#!/bin/bash" >> $job_to_send
echo "SGEPREFIX -S /bin/bash" >> $job_to_send
echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
echo "SGEPREFIX -cwd" >> $job_to_send
echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
echo "SGEPREFIX -j y" >> $job_to_send
echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$kennung" >> $job_to_send
echo " " >> $job_to_send
echo "set -x" >> $job_to_send
echo "export PALM_BIN=$PALM_BIN" | sed -e 's:'$HOME':$HOME:' >> $job_to_send
echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
echo "" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "rm -f scpjob.${kennung}" >> $job_to_send
echo "%%END%%" >> $job_to_send
echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${kennung}.tmp > scpjob.${kennung}" >> $job_to_send
echo "rm -f scpjob.${kennung}.tmp" >> $job_to_send
else
echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
echo "# @\\\$-q $return_queue" >> $job_to_send
echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
if [[ $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es ]]
then
echo "# @\$-l mpp_p=0" >> $job_to_send
fi
echo '# @\$-lF 10mb' >> $job_to_send
# echo '# @\$-o /dev/null' >> $job_to_send
echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
echo '# @\\\$-eo' >> $job_to_send
echo " " >> $job_to_send
if [[ $remote_host = t3ej2 || $remote_host = t3ej5 ]]
then
echo "set +vx" >> $job_to_send
echo ". .profile" >> $job_to_send
fi
echo "set -x" >> $job_to_send
echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
echo "%%END%%" >> $job_to_send
fi
if [[ $(echo $remote_host | cut -c1-3) = ibm ]]
then
echo "llsubmit scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = lccrayb ]]
then
echo "qsub -q $return_queue scpjob.$kennung" >> $job_to_send
elif [[ $(echo $remote_host | cut -c1-5) = lcsgi ]]
then
echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
echo "chmod u+x scpjob.$kennung" >> $job_to_send
echo "msub scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 ]]
then
echo "qsub -J n scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = t3es ]]
then
echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = lckiaps ]]
then
echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
elif [[ $remote_host = lckyu* ]]
then
echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
elif [[ $remote_host = lcflow ]]
then
echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$kennung\" " >> $job_to_send
else
echo "$submcom scpjob.$kennung" >> $job_to_send
fi
if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
then
echo "rm scpjob.$kennung" >> $job_to_send
fi
if [[ $remote_host = nech ]]
then
echo "cd -" >> $job_to_send
fi
else
# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
fi
echo "set -x" >> $job_to_send
echo " ' exit" >> $job_to_send
echo "set -x" >> $job_to_send
fi
# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
cat $file_to_send >> $job_to_send
if [[ $remote_host = ibm ]]
then
echo " " >> $job_to_send
echo "exit" >> $job_to_send
fi
# remove job file
if [[ $remote_host = lctit || $remote_host = ibmku || $remote_host = lcflow ]]
then
echo " " >> $job_to_send
echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
fi
# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
if [[ -z $remote_user ]]
then
if [[ $remote_host = t3eb || $remote_host = t3eh || $remote_host = t3ej2 || $remote_host = t3ej5 || $remote_host = t3es || $remote_host = vpp ]]
then
grep $remote_addres ~/.netrc | read dum dum dum remote_user dum dum
fi
fi
# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
if [[ $no_submit = false ]]
then
if [[ $remote_host != $local_host ]]
then
[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
if [[ $remote_host = ibms || $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
then
job_catalog_save=$job_catalog
job_catalog=job_queue
elif [[ $remote_host = nech ]]
then
job_catalog_save=$job_catalog
job_catalog=/hpf/b/${remote_user}/job_queue
fi
if [[ $remote_host = nech ]]
then
# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
# TRANSFERIERT WERDEN
scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
else
scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
fi
if [[ $? = 1 ]]
then
locat=scp; exit
fi
if [[ $remote_host = ibms ]]
then
job_catalog=$job_catalog_save
fi
[[ $verify = true ]] && printf "\n >>> finished\n"
else
eval job_catalog=$job_catalog
cp $job_to_send ${job_catalog}/$job_on_remhost
fi
# NQS- BZW. LOADLEVELER-JOB STARTEN
if [[ $remote_host != $local_host ]]
then
[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
if [[ $(echo $remote_host | cut -c1-5) = lcsgi && $prio = true ]]
then
printf "\n >>> submit with HLRN qos-feature hiprio...\n"
ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
elif [[ $remote_host = ibmku ]]
then
ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
elif [[ $remote_host = lcflow ]]
then
/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
else
ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
fi
[[ $verify = true ]] && printf " >>> o.k.\n"
else
cd $job_catalog
if [[ $(echo $local_host | cut -c1-5) = lcsgi || $(echo $local_host | cut -c1-3) = ibm || $(echo $local_host | cut -c1-6) = lccray ]]
then
eval $submcom $job_on_remhost
elif [[ $local_host = lcfimm || $local_host = lctit || $localhost = lcxe6 || $localhost = lck || $localhost = lckordi || $localhost = lcyon || $localhost = lcsb || $localhost = lckyu* ]]
then
chmod u+x $job_on_remhost
eval $submcom $job_on_remhost
elif [[ $local_host = nech ]]
then
if [[ $queue = default ]]
then
eval $submcom $job_on_remhost
else
eval $submcom -q $queue $job_on_remhost
fi
else
qsub $job_on_remhost
fi
# Jobfile must not be deleted on lctit/ibmku!! This will be done
# only at the end of the job.
if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
then
rm $job_on_remhost
fi
cd - > /dev/null
fi
fi
# ABSCHLUSSARBEITEN
if [[ $no_submit = false ]]
then
rm -f $job_to_send
fi
[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"