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source: palm/trunk/SCRIPTS/subjob @ 91

Last change on this file since 91 was 82, checked in by raasch, 18 years ago
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1	#!/bin/ksh
2	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
3	# $Id: subjob 54 2007-03-08 00:00:02Z raasch $
4
5	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
6	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
7	# Host zurueckgeschickt werden sollen
8
9
10	# letzte Aenderung:
11	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
12	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
13	# 06/02/98 - Siggi - berte validiert
14	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
15	# moeglich
16	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
17	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
18	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
19	# allgemeine Anpassungen fuer ibm-Rechner
20	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
21	# Ruecktransfer des Jobprotokolls fuer diese
22	# Maschine abgeschaltet
23	# 31/10/02 - Siggi - berni validiert
24	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
25	# 08/11/02 - Siggi - quanero validiert
26	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
27	# 23/01/03 - Siggi - hostname nobel changed to nobela
28	# 06/02/03 - Siggi - gregale validated
29	# 12/02/03 - Siggi - orkan and maestro validated
30	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
31	# 12/03/03 - Siggi - nec at DKRZ validated
32	# 13/03/03 - Siggi - new nqs resource variable Memory
33	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
34	# node
35	# 11/04/03 - Siggi - network on ibms has attribute "shared"
36	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
37	# cxxl added to ibmh
38	# 29/08/03 - Siggi - changes in job queues and communication system on
39	# ibms
40	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
41	# 30/10/03 - Siggi - nech is not supported any more
42	# 10/11/03 - Siggi - nech2 renamed to nech
43	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
44	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
45	# 31/03/04 - Siggi - new option -N for node usage
46	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
47	# due to error in ssh installation (otherwise a prompt
48	# for the password appears)
49	# 23/07/04 - Siggi - changes due to the new berni configuration
50	# (federation switch)
51	# 01/09/04 - Gerald new job-classes on hanni
52	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
53	# 23/11/04 - Siggi - new job class cdata on hanni and berni
54	# 03/12/04 - Siggi - notification on ibm switched of in case of
55	# delete_dayfile = true, node usage in cdev set to
56	# shared
57	# 16/02/05 - Gerald hababai validated
58	# 29/03/05 - Micha - new job class channi on hanni
59	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
60	# on ibms
61	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
62	# p_normal
63	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
64	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
65	# "sn_all", new job class cexp
66	# 08/09/05 - Siggi - IP-address of gfdl3 changed
67	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
68	# hurricane (with -X0)
69	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
70	# added
71	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
72	# 09/02/06 - Siggi - ibmy admitted
73	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
74	# 13/04/06 - Siggi - ostria admitted
75	# 18/04/06 - Siggi - new option -O for OpenMP usage
76	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
77	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
78	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
79	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
80	# 28/11/06 - Siggi - levanto admitted
81	# 13/02/07 - Siggi - hpmuk releated code removed
82	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
83	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
84
85
86	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
87	delete_dayfile=false
88	locat=normal
89	no_default_queue=none
90	no_submit=false
91	job_catalog="~/job_queue"
92	job_name=none
93	local_user=$LOGNAME
94	node_usage=shared
95	numprocs=1
96	punkte="..........................................................."
97	submcom=qsub
98	queue=default
99	remote_host=none
100	remote_user=""
101	verify=true
102
103	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
104	typeset -i inumprocs nodes=0 tasks_per_node=0 threads_per_task=1
105	typeset -L20 spalte1
106	typeset -R40 spalte2
107	typeset -L60 spalte3
108
109
110
111	# FEHLERBEHANDLUNG
112	# BEI EXIT:
113	trap 'if [[ $locat != normal ]]
114	then
115	case $locat in
116	(option) printf "\n --> available optios can be displayed"
117	printf " by typing:"
118	printf "\n \"subjob ?\" \n";;
119	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
120	(*) printf "\n +++ unknown error"
121	printf "\n please inform S. Raasch!\n"
122	esac
123	[[ -f $job_to_send ]] && rm $job_to_send
124	printf "\n\n+++ SUBJOB killed \n\n"
125	fi' exit
126
127
128	# BEI TERMINAL-BREAK:
129	trap '[[ -f $job_to_send ]] && rm $job_to_send
130	printf "\n\n+++ SUBJOB killed \n\n"
131	exit
132	' 2
133
134
135
136
137	# LOKALEN HOSTNAMEN FESTSTELLEN
138	local_host=$(hostname)
139
140
141
142	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
143	# UEBERHAUPT ZULAESSIG IST
144	case $local_host in
145	(atmos) local_addres=172.20.25.35; local_host=lcide;;
146	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
147	(breg-en0\|berni-en0) local_addres=130.73.230.10; local_host=ibmb;;
148	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
149	(cs*) local_addres=136.172.44.131; local_host=nech;;
150	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
151	(gate\|n-sx) local_addres=133.5.178.11; local_host=neck;;
152	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
153	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
154	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
155	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
156	(hreg-en0\|hanni-en0) local_addres=130.75.4.10; local_host=ibmh;;
157	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
158	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
159	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
160	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
161	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
162	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
163	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
164	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
165	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
166	(tgg*) local_addres=172.17.75.161; local_host=lctit;;
167	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
168	(*) printf "\n +++ \"$local_host\" unknown";
169	printf "\n please inform S. Raasch!";
170	locat=parameter; exit;;
171	esac
172
173
174
175	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
176	remote_host=$local_host
177
178
179
180
181	# PROZEDUROPTIONEN EINLESEN
182	while getopts :c:dDh:m:n:N:O:q:t:T:u:vX: option
183	do
184	case $option in
185	(c) job_catalog=$OPTARG;;
186	(d) delete_dayfile=true;;
187	(D) no_submit=true;;
188	(h) remote_host=$OPTARG;;
189	(m) memory=$OPTARG;;
190	(n) job_name=$OPTARG;;
191	(N) node_usage=$OPTARG;;
192	(O) threads_per_task=$OPTARG;;
193	(q) no_default_queue=$OPTARG;;
194	(t) cputime=$OPTARG;;
195	(T) tasks_per_node=$OPTARG;;
196	(u) remote_user=$OPTARG;;
197	(v) verify=false;;
198	(X) numprocs=$OPTARG;;
199	(\?) printf "\n +++ Option $OPTARG unknown \n";
200	locat=option; exit;;
201	esac
202	done
203
204
205	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
206	shift OPTIND-1; file_to_send=$1
207
208
209	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
210	if [ "$1" = "?" ]
211	then
212	(printf "\n *** subjob can be called as follows:\n"
213	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
214	printf "\n Description of available options:\n"
215	printf "\n Option Description Default-Value"
216	printf "\n -c job-input- and output-catalog ~/job_queue"
217	printf "\n -d no job-protocol will be created ---"
218	printf "\n -D only the job-file will be created ---"
219	printf "\n -h execution host, available hosts: $remote_host"
220	printf "\n ibm, ibmb, ibmh, ibms, ibmy, lcmuk,"
221	printf "\n lctit, nech, neck, unics"
222	printf "\n -m memory demand per process in MByte ---"
223	printf "\n -n jobname <jobdatei>"
224	printf "\n -O threads per task (for OpenMP usage) 1"
225	printf "\n -q job-queue to be used default"
226	printf "\n -t allowed cpu-time in seconds ---"
227	printf "\n -T tasks per node (on parallel hosts) ---"
228	printf "\n -u username on execution host from .netrc"
229	printf "\n -v no prompt for confirmation ---"
230	printf "\n -X # of processors (on parallel hosts) 1"
231	printf "\n "
232	printf "\n The only possible positional parameter is <jobfile>:"
233	printf "\n The complete NQS-job must be provided here."
234	printf "\n <jobfile>=? creates this outline\n\n") \| more
235	exit
236	fi
237
238
239
240	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
241	if [[ "$file_to_send" = "" ]]
242	then
243	printf "\n +++ job-file missing"
244	locat=parameter; exit
245	else
246	if [[ -f $file_to_send ]]
247	then
248	true
249	else
250	printf "\n +++ job-file: "
251	printf "\n $file_to_send"
252	printf "\n does not exist"
253	locat=parameter; exit
254	fi
255	fi
256
257
258
259	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
260	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
261	if [[ $job_name = none ]]
262	then
263	job_name=$file_to_send
264	fi
265	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
266	then
267	printf "\n +++ job-file name: "
268	printf "\n $job_name"
269	printf "\n must not contain \"/\"-characters"
270	locat=parameter; exit
271	fi
272
273
274
275
276	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
277	# ODER WENN HOST NICHT ANGEGEBEN WURDE
278	if [[ $remote_host = none ]]
279	then
280	printf "\n +++ host missing"
281	locat=option; exit
282	else
283	case $remote_host in
284	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
285	(ibmb) queue=cpar; remote_addres=130.73.230.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
286	(ibmh) queue=cpar; remote_addres=130.75.4.10; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
287	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
288	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
289	(lctit) queue=default; remote_addres=172.17.75.161; submcom=/n1ge/TITECH_GRID/tools/bin/n1ge;;
290	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
291	(neck) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=133.5.178.11; submcom="/usr/bin/nqsII/qsub";;
292	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
293	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
294	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
295	locat=parameter; exit;;
296	esac
297	fi
298
299
300	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
301	if [[ $no_default_queue != none ]]
302	then
303	error=false
304	ndq=$no_default_queue
305	case $remote_host in
306	(ibm) case $ndq in
307	(p690_express\|p690_standard\|p690_long) error=false;;
308	(*) error=true;;
309	esac;;
310	(ibmb) case $ndq in
311	(cdata\|cdev\|cexp\|c1\|cshare\|csolo\|cspec) error=false;;
312	(*) error=true;;
313	esac;;
314	(ibmh) case $ndq in
315	(cdata\|cdev\|cexp\|channi\|cxxl\|c1\|cshare\|csolo\|cspec) error=false;;
316	(*) error=true;;
317	esac;;
318	(ibms) case $ndq in
319	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
320	(*) error=true;;
321	esac;;
322	(ibmy) case $ndq in
323	(parallel) error=false;;
324	(*) error=true;;
325	esac;;
326	(lctit) case $ndq in
327	(default\|high\|bes1\|bes2\|sla1\|sla2) error=false;;
328	(*) error=true;;
329	esac;;
330	(t3eb) case $ndq in
331	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
332	(*) error=true;;
333	esac;;
334	(t3eh) case $ndq in
335	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
336	(*) error=true;;
337	esac;;
338	(t3ej2\|t3ej5) case $ndq in
339	(low\|normal\|high) error=false;;
340	(*) error=true;;
341	esac;;
342	(t3es) case $ndq in
343	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
344	(*) error=true;;
345	esac;;
346	(unics) case $ndq in
347	(unics\|ht) error=false;;
348	(*) error=true;;
349	esac;;
350	esac
351	if [[ $error = true ]]
352	then
353	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
354	locat=parameter; exit
355	else
356	queue=$no_default_queue
357	fi
358	fi
359
360
361
362	# KNOTENNUTZUNG IN ENTWICKLERQUEUE MUSS SHARED SEIN
363	if [[ $node_usage != shared && $queue = cdev ]]
364	then
365	node_usage=shared
366	fi
367
368
369
370	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
371	# AUFTEILEN
372	done=false
373	while [[ $done = false ]]
374	do
375	if (( $cputime <= 0 ))
376	then
377	printf "\n +++ wrong cpu-time or cpu-time missing"
378	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
379	printf "\n >>> "
380	read cputime 1>/dev/null 2>&1
381	else
382	done=true
383	fi
384	done
385	if [[ $remote_host = nech ]]
386	then
387	if (( tasks_per_node != 0 ))
388	then
389	(( cputime = cputime * tasks_per_node ))
390	elif [[ $numprocs != 0 ]]
391	then
392	(( cputime = cputime * numprocs ))
393	fi
394	fi
395	(( stunden = cputime / 3600 ))
396	(( resttime = cputime - stunden * 3600 ))
397	(( minuten = resttime / 60 ))
398	(( sekunden = resttime - minuten * 60 ))
399	timestring=${stunden}:${minuten}:${sekunden}
400
401
402
403	# PRUEFEN DER KERNSPEICHERANFORDERUNG
404	done=false
405	while [[ $done = false ]]
406	do
407	if (( memory <= 0 ))
408	then
409	printf "\n +++ wrong memory demand or memory demand missing"
410	printf "\n >>> Please type memory in MByte per process as INTEGER:"
411	printf "\n >>> "
412	read memory 1>/dev/null 2>&1
413	else
414	done=true
415	fi
416	done
417
418	if [[ $remote_host = nech \|\| $remote_host = neck ]]
419	then
420	if (( tasks_per_node != 0 ))
421	then
422	(( Memory = memory * tasks_per_node / 1000 ))
423	elif [[ $numprocs != 0 ]]
424	then
425	(( Memory = memory * numprocs / 1000 ))
426	else
427	(( Memory = memory / 1000 ))
428	fi
429	fi
430
431
432	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
433	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
434	then
435	(( memory = memory * threads_per_task ))
436	fi
437
438
439	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
440	if (( tasks_per_node != 0 ))
441	then
442	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
443	fi
444
445
446
447	# HEADER-AUSGABE
448	if [[ $verify = true ]]
449	then
450	printf "\n\n"
451	printf "#--------------------------------------------------------------# \n"
452	spalte1=SUBJOB;spalte2=$(date)
453	printf "\| $spalte1$spalte2 \| \n"
454	printf "\| \| \n"
455	printf "\| values of parameters/options: \| \n"
456	spalte1=local_host$punkte; spalte2=$punkte$local_host
457	printf "\| $spalte1$spalte2 \| \n"
458	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
459	printf "\| $spalte1$spalte2 \| \n"
460	spalte1=queue$punkte; spalte2=$punkte$queue
461	printf "\| $spalte1$spalte2 \| \n"
462	spalte1=memory$punkte; spalte2="$punkte$memory mb"
463	printf "\| $spalte1$spalte2 \| \n"
464	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
465	printf "\| $spalte1$spalte2 \| \n"
466	spalte1=job_name$punkte; spalte2="$punkte$job_name"
467	printf "\| $spalte1$spalte2 \| \n"
468	printf "#--------------------------------------------------------------# \n\n"
469
470
471	# KONTROLLABFRAGE, OB ALLES O.K.
472	antwort="dummy"
473	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
474	do
475	read antwort?" >>> continue (y/n) ? "
476	done
477	if [[ $antwort = n \|\| $antwort = N ]]
478	then
479	locat=verify; exit
480	fi
481	printf "\n"
482	fi
483
484
485
486	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
487	kennung=$RANDOM
488	job_on_remhost=${job_name}_${kennung}_$local_host
489	job_to_send=job_to_send_$kennung
490	if [[ $delete_dayfile = false ]]
491	then
492	remote_dayfile=${local_host}_${job_name}_result_$kennung
493	local_dayfile=${remote_host}_${job_name}
494	else
495	remote_dayfile=/dev/null
496	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
497	then
498	notification='# @ notification = never'
499	fi
500	fi
501
502
503
504	# QSUB- ODER LL-KOMMANDOS BZW. SKRIPTE GENERIEREN
505	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
506	then
507
508	if [[ $remote_host = ibmy ]]
509	then
510	consumable_memory=""
511	else
512	consumable_memory="ConsumableMemory($memory mb)"
513	fi
514	if [[ $queue = cdev ]]
515	then
516	data_limit="# @ data_limit = 1.76gb"
517	network_to_use="# @ network.mpi = sn_all,shared,ip"
518	else
519	if [[ $remote_host = ibms ]]
520	then
521	network_to_use="# @ network.mpi = csss,shared,us"
522	elif [[ $remote_host = ibmy ]]
523	then
524	network_to_use=""
525	else
526	network_to_use="# @ network.mpi = sn_all,shared,us"
527	data_limit="# @ data_limit = 1.76gb"
528	fi
529	fi
530
531	cat > $job_to_send << %%END%%
532	#!/bin/ksh
533
534	# @ job_type = parallel
535	# @ job_name = palm
536	# @ wall_clock_limit = ${timestring},$timestring
537	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
538	# @ output = $remote_dayfile
539	# @ error = $remote_dayfile
540	# @ image_size = 50
541	# @ class = $queue
542	# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes
543	$network_to_use
544	$data_limit
545	$notification
546
547	%%END%%
548
549	if (( nodes > 0 ))
550	then
551
552	cat >> $job_to_send << %%END%%
553	# @ node = $nodes
554	# @ tasks_per_node = $tasks_per_node
555	# @ node_usage = $node_usage
556	# @ queue
557
558	%%END%%
559
560	else
561
562	if [[ $remote_host != ibmy ]]
563	then
564
565	cat >> $job_to_send << %%END%%
566	# @ blocking = unlimited
567	# @ total_tasks = $numprocs
568	# @ node_usage = $node_usage
569	# @ queue
570
571	%%END%%
572
573	else
574
575	cat >> $job_to_send << %%END%%
576	# @ node = 1
577	# @ total_tasks = $numprocs
578	# @ queue
579
580	%%END%%
581
582	fi
583
584	fi
585
586	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
587	then
588
589	cat > $job_to_send << %%END%%
590	#!/bin/ksh
591
592	# @ job_type = serial
593	# @ node_usage = $node_usage
594	# @ job_name = palm
595	# @ wall_clock_limit = ${timestring},$timestring
596	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
597	# @ output = $remote_dayfile
598	# @ error = $remote_dayfile
599	# @ class = $queue
600	$notification
601
602	# @ queue
603
604	%%END%%
605
606	elif [[ $remote_host = nech ]]
607	then
608
609	if (( nodes > 1 ))
610	then
611	cat > $job_to_send << %%END%%
612	#!/bin/ksh
613	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
614	#PBS -l ${qsubmem}=${Memory}gb
615	#PBS -b $nodes
616	#PBS -o $remote_dayfile
617	#PBS -N palm
618	#PBS -j o
619	#PBS -T mpisx
620
621	%%END%%
622
623	elif [[ $numprocs != 0 ]]
624	then
625	cat > $job_to_send << %%END%%
626	#!/bin/ksh
627	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
628	#PBS -l ${qsubmem}=${Memory}gb
629	#PBS -o $remote_dayfile
630	#PBS -N palm
631	#PBS -j o
632
633	%%END%%
634
635	else
636	cat > $job_to_send << %%END%%
637	#!/bin/ksh
638	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
639	#PBS -o $remote_dayfile
640	#PBS -j o
641
642	%%END%%
643
644	fi
645
646	elif [[ $remote_host = neck ]]
647	then
648
649	if (( nodes > 1 ))
650	then
651	cat > $job_to_send << %%END%%
652	#!/bin/ksh
653	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
654	#PBS -l ${qsubmem}=${Memory}gb
655	#PBS -b $nodes
656	#PBS -o $remote_dayfile
657	#PBS -N palm
658	#PBS -j o
659	#PBS -T mpisx
660
661	%%END%%
662
663	elif [[ $numprocs != 0 ]]
664	then
665	cat > $job_to_send << %%END%%
666	#!/bin/ksh
667	#PBS -q ${queue}
668	#PBS -l cpunum_prc=$tasks_per_node,cputim_job=$cputime
669	#PBS -l ${qsubmem}=${Memory}gb
670	#PBS -o $remote_dayfile
671	#PBS -N palm
672	#PBS -j o
673	#PBS -T mpisx
674
675	%%END%%
676
677	else
678	cat > $job_to_send << %%END%%
679	#!/bin/ksh
680	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
681	#PBS -o $remote_dayfile
682	#PBS -j o
683
684	%%END%%
685
686	fi
687
688	elif [[ $remote_host = lctit ]]
689	then
690	cat > $job_to_send << %%END%%
691	#!/bin/bash
692	#$ -S /bin/bash
693	cd $job_catalog
694	export PATH=$PALM_BIN:\$PATH
695	echo \$PATH
696
697	%%END%%
698
699	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
700	submcom="$submcom -N $job_name -sgeout $remote_dayfile -q default"
701
702	else
703
704	cat > $job_to_send << %%END%%
705	# @\$-q ${queue}
706	# @\$-l${qsubtime} $timestring
707	# @\$-l${qsubmem} ${memory}mb
708	# @\$-o $remote_dayfile
709	# @\$-eo
710
711	%%END%%
712
713	fi
714
715
716	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
717	# BEI EXIT VERANLASSEN
718	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
719	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
720	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
721	then
722	echo "set +vx" >> $job_to_send
723	echo "trap '" >> $job_to_send
724	echo "set +vx" >> $job_to_send
725	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lctit ]]
726	then
727	if [[ $remote_host = ibmb \|\| $remote_host = ibmh ]]
728	then
729	return_queue=c1
730	elif [[ $remote_host = ibms ]]
731	then
732	return_queue=p_normal
733	elif [[ $remote_host = ibmy ]]
734	then
735	return_queue=serial
736	elif [[ $remote_host = lctit ]]
737	then
738	return_queue=default
739	elif [[ $remote_host = neck ]]
740	then
741	return_queue=S
742	else
743	return_queue=unknown
744	fi
745
746	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
747	then
748
749	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
750	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
751	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
752	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
753	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
754	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
755	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
756	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
757	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
758	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
759
760	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
761	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
762
763	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
764	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
765	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
766
767	elif [[ $remote_host = nech ]]
768	then
769	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
770	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
771	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
772	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
773	echo "#PBS -j o" >> $job_to_send
774	echo " " >> $job_to_send
775	echo "set -x" >> $job_to_send
776	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
777	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
778	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
779	echo "%%END%%" >> $job_to_send
780
781	elif [[ $remote_host = neck ]]
782	then
783	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
784	echo "#PBS -q $return_queue" >> $job_to_send
785	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
786	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
787	echo "#PBS -j o" >> $job_to_send
788	echo " " >> $job_to_send
789	echo "set -x" >> $job_to_send
790	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
791	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
792	echo "%%END%%" >> $job_to_send
793
794	elif [[ $remote_host = lctit ]]
795	then
796	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
797	echo "set -x" >> $job_to_send
798	echo "PATH=\$PATH:$job_catalog/../pub" >> $job_to_send
799	echo "cd $job_catalog" >> $job_to_send
800	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
801	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
802	echo "%%END%%" >> $job_to_send
803
804	else
805
806	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
807	echo "# @\\\$-q $return_queue" >> $job_to_send
808	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
809	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
810	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
811	then
812	echo "# @\$-l mpp_p=0" >> $job_to_send
813	fi
814	echo '# @\$-lF 10mb' >> $job_to_send
815	# echo '# @\$-o /dev/null' >> $job_to_send
816	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
817	echo '# @\\\$-eo' >> $job_to_send
818	echo " " >> $job_to_send
819	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
820	then
821	echo "set +vx" >> $job_to_send
822	echo ". .profile" >> $job_to_send
823	fi
824	echo "set -x" >> $job_to_send
825	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
826	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
827	echo "%%END%%" >> $job_to_send
828	fi
829
830	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
831	then
832	echo "llsubmit scpjob.$kennung" >> $job_to_send
833	elif [[ $remote_host = lctit ]]
834	then
835	echo "chmod u+x scpjob.$kennung" >> $job_to_send
836	echo "rm -rf ${job_catalog}/last_job_transfer_protocol" >> $job_to_send
837	echo "n1ge -N jobtransfer -q $return_queue -sgeout ${job_catalog}/last_job_transfer_protocol scpjob.$kennung" >> $job_to_send
838	echo "sleep 10" >> $job_to_send
839	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
840	then
841	echo "qsub -J n scpjob.$kennung" >> $job_to_send
842	elif [[ $remote_host = t3es ]]
843	then
844	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
845	else
846	echo "qsub scpjob.$kennung" >> $job_to_send
847	fi
848	echo "rm scpjob.$kennung" >> $job_to_send
849	if [[ $remote_host = nech ]]
850	then
851	echo "cd -" >> $job_to_send
852	fi
853	else
854	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
855	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
856	fi
857	echo "set -x" >> $job_to_send
858	echo " ' exit" >> $job_to_send
859	echo "set -x" >> $job_to_send
860	fi
861
862
863
864	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
865	cat $file_to_send >> $job_to_send
866
867	if [[ $remote_host = ibm ]]
868	then
869	echo " " >> $job_to_send
870	echo "exit" >> $job_to_send
871	fi
872	if [[ $remote_host = lctit ]]
873	then
874	echo " " >> $job_to_send
875	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
876	fi
877
878
879
880	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
881	if [[ -z $remote_user ]]
882	then
883	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
884	then
885	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
886	fi
887	fi
888
889
890
891	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
892	if [[ $no_submit = false ]]
893	then
894	if [[ $remote_host != $local_host ]]
895	then
896	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
897	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
898	then
899	job_catalog_save=$job_catalog
900	job_catalog=job_queue
901	elif [[ $remote_host = nech ]]
902	then
903	job_catalog_save=$job_catalog
904	job_catalog=/hpf/b/${remote_user}/job_queue
905	fi
906	if [[ $local_host = decalpha ]]
907	then
908	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
909	# PASSWORT AB
910	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
911	elif [[ $remote_host = nech ]]
912	then
913	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
914	# TRANSFERIERT WERDEN
915	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
916	else
917	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
918	fi
919	if [[ $? = 1 ]]
920	then
921	locat=scp; exit
922	fi
923	if [[ $remote_host = ibms ]]
924	then
925	job_catalog=$job_catalog_save
926	fi
927	[[ $verify = true ]] && printf "\n >>> finished\n"
928	else
929	eval job_catalog=$job_catalog
930	cp $job_to_send ${job_catalog}/$job_on_remhost
931	fi
932
933
934
935	# NQS- BZW. LOADLEVELER-JOB STARTEN
936	if [[ $remote_host != $local_host ]]
937	then
938	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
939	if [[ $remote_host != lctit ]]
940	then
941	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
942	else
943	# TIT ERLAUBT NUR DIE AUSFÜHRUNG GANZ BESTIMMTER KOMMANDOS
944	# MIT SSH, DESHALB AUFRUF PER PIPE
945	# UEBERGANGSWEISE CHECK, OB N1GE ENVIRONMENT WIRKLICH VERFUEGBAR
946	print "cd $job_catalog; chmod u+x $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
947	echo "first try" > send_protocol
948	while [[ $(cat send_protocol \| grep -c "Forwarding to N1GE") = 0 ]]
949	do
950	if [[ $(cat send_protocol \| grep -c "first try") = 1 ]]
951	then
952	printf "\n trying to submit job to TIT cluster..."
953	else
954	printf "\n +++ failed ... trying to submit again ..."
955	fi
956	print "cd $job_catalog; $submcom $job_on_remhost" \| ssh $remote_addres -l $remote_user > send_protocol 2>&1
957	cat send_protocol
958	done
959	sleep 10
960	print "cd $job_catalog; rm $job_on_remhost" \| ssh $remote_addres -l $remote_user > /dev/null 2>&1
961	echo "$submcom $job_on_remhost"
962	rm send_protocol
963	fi
964
965	[[ $verify = true ]] && printf " >>> o.k.\n"
966	else
967	cd $job_catalog
968	if [[ $(echo $local_host \| cut -c1-3) = ibm ]]
969	then
970	eval $submcom $job_on_remhost
971	elif [[ $local_host = lctit ]]
972	then
973	eval $submcom $job_on_remhost
974	echo "$submcom $job_on_remhost"
975	chmod u+x $job_on_remhost
976	elif [[ $local_host = nech ]]
977	then
978	if [[ $queue = default ]]
979	then
980	eval $submcom $job_on_remhost
981	else
982	eval $submcom -q $queue $job_on_remhost
983	fi
984	else
985	qsub $job_on_remhost
986	fi
987	# JOBFILE DARF AUF LCTIT NICHT GELOESCHT WERDEN!! GESCHIEHT ERST AM JOBENDE
988	[[ $local_host != lctit ]] && rm $job_on_remhost
989	cd - > /dev/null
990	fi
991	fi
992
993
994
995	# ABSCHLUSSARBEITEN
996
997	if [[ $no_submit = false ]]
998	then
999	rm $job_to_send
1000	fi
1001	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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