Home

Context Navigation

source: palm/trunk/SCRIPTS/subjob @ 1097

Last change on this file since 1097 was 1096, checked in by raasch, 12 years ago
last commit documented
Property svn:keywords set to `Id Rev`
File size: 47.9 KB

Rev	Line
[1]	1	#!/bin/ksh
[1090]	2
	3	# subjob - script for automatic generation and submission of batch-job files
	4	# for various batch queuing systems
	5
[1046]	6	#--------------------------------------------------------------------------------#
	7	# This file is part of PALM.
	8	#
	9	# PALM is free software: you can redistribute it and/or modify it under the terms
	10	# of the GNU General Public License as published by the Free Software Foundation,
	11	# either version 3 of the License, or (at your option) any later version.
	12	#
	13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	16	#
	17	# You should have received a copy of the GNU General Public License along with
	18	# PALM. If not, see <http://www.gnu.org/licenses/>.
	19	#
	20	# Copyright 1997-2012 Leibniz University Hannover
	21	#--------------------------------------------------------------------------------#
	22	#
	23	# Current revisions:
[1090]	24	# ------------------
[1096]	25	#
[1046]	26	#
	27	# Former revisions:
	28	# -----------------
[169]	29	# $Id: subjob 1096 2013-02-03 02:49:41Z raasch $
[1047]	30	#
[1096]	31	# 1094 2013-02-03 01:52:12Z raasch
	32	# new option -P for explicit setting of ssh/scp port,
	33	# decalpha parts (yonsei) removed
	34	#
[1091]	35	# 2013-02-02 07:06:13Z raasch
	36	# adjustments for Kyushu-University computing center (lckyut)
	37	# old changelog messages removed
	38	#
[1047]	39	# 1046 2012-11-09 14:38:45Z maronga
	40	# code put under GPL (PALM 3.9)
	41	#
[1090]	42	# 08/07/94 - Siggi - first version finished
	43	# 29/06/94 - Siggi - script development started
	44	#--------------------------------------------------------------------------------#
	45	# subjob - script for automatic generation and submission of batch-job files
	46	# for various batch queuing systems
	47	#--------------------------------------------------------------------------------#
[1]	48
	49
	50	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	51	delete_dayfile=false
[799]	52	email_notification=none
[122]	53	group_number=none
[1]	54	locat=normal
	55	no_default_queue=none
	56	no_submit=false
	57	job_catalog="~/job_queue"
	58	job_name=none
	59	local_user=$LOGNAME
	60	node_usage=shared
[475]	61	numprocs=0
[1]	62	punkte="..........................................................."
	63	submcom=qsub
	64	queue=default
	65	remote_host=none
	66	remote_user=""
	67	verify=true
	68
	69	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	70	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	71	typeset -L20 spalte1
	72	typeset -R40 spalte2
	73	typeset -L60 spalte3
	74
	75
	76
	77	# FEHLERBEHANDLUNG
	78	# BEI EXIT:
	79	trap 'if [[ $locat != normal ]]
	80	then
	81	case $locat in
	82	(option) printf "\n --> available optios can be displayed"
	83	printf " by typing:"
	84	printf "\n \"subjob ?\" \n";;
	85	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	86	(*) printf "\n +++ unknown error"
	87	printf "\n please inform S. Raasch!\n"
	88	esac
	89	[[ -f $job_to_send ]] && rm $job_to_send
	90	printf "\n\n+++ SUBJOB killed \n\n"
	91	fi' exit
	92
	93
	94	# BEI TERMINAL-BREAK:
	95	trap '[[ -f $job_to_send ]] && rm $job_to_send
	96	printf "\n\n+++ SUBJOB killed \n\n"
	97	exit
	98	' 2
	99
	100
	101
	102
	103	# LOKALEN HOSTNAMEN FESTSTELLEN
	104	local_host=$(hostname)
	105
	106
	107
	108	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	109	# UEBERHAUPT ZULAESSIG IST
[717]	110	# Note: One of the entries for "lck" or "lckordi" always has to be
	111	# comment out, because the hostname (node*) is same for both machines
[1]	112	case $local_host in
	113	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	114	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	115	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	116	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	117	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	118	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	119	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	120	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	121	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[749]	122	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[12]	123	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[372]	124	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[693]	125	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
[108]	126	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	127	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	128	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	129	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	130	(node*) local_addres=165.132.26.61 local_host=lck;;
[717]	131	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
[693]	132	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
[101]	133	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	134	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
[5]	135	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	136	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[892]	137	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
[400]	138	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	139	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	140	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	141	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[739]	142	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
[292]	143	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	144	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	145	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[749]	146	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
[5]	147	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	148	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	149	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
[1040]	150	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
[5]	151	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	152	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[892]	153	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
[1]	154	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	155	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	156	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	157	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[789]	158	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
[5]	159	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[622]	160	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
[1]	161	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
[799]	162	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
[1090]	163	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
[1]	164	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	165	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	166	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	167	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[635]	168	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
[1021]	169	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
[1]	170	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
[622]	171	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
[1]	172	(*) printf "\n +++ \"$local_host\" unknown";
	173	printf "\n please inform S. Raasch!";
	174	locat=parameter; exit;;
	175	esac
	176
	177
	178
	179	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	180	remote_host=$local_host
	181
	182
	183
	184
	185	# PROZEDUROPTIONEN EINLESEN
[1094]	186	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
[1]	187	do
	188	case $option in
	189	(c) job_catalog=$OPTARG;;
	190	(d) delete_dayfile=true;;
	191	(D) no_submit=true;;
[352]	192	(e) email_notification=$OPTARG;;
[125]	193	(g) group_number=$OPTARG;;
[1]	194	(h) remote_host=$OPTARG;;
	195	(m) memory=$OPTARG;;
	196	(n) job_name=$OPTARG;;
	197	(N) node_usage=$OPTARG;;
	198	(O) threads_per_task=$OPTARG;;
[1094]	199	(P) scp_port=$OPTARG;;
[1]	200	(q) no_default_queue=$OPTARG;;
	201	(t) cputime=$OPTARG;;
	202	(T) tasks_per_node=$OPTARG;;
	203	(u) remote_user=$OPTARG;;
	204	(v) verify=false;;
	205	(X) numprocs=$OPTARG;;
	206	(\?) printf "\n +++ Option $OPTARG unknown \n";
	207	locat=option; exit;;
	208	esac
	209	done
	210
	211
	212	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	213	shift OPTIND-1; file_to_send=$1
	214
	215
	216	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	217	if [ "$1" = "?" ]
	218	then
	219	(printf "\n *** subjob can be called as follows:\n"
	220	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	221	printf "\n Description of available options:\n"
	222	printf "\n Option Description Default-Value"
	223	printf "\n -c job-input- and output-catalog ~/job_queue"
	224	printf "\n -d no job-protocol will be created ---"
	225	printf "\n -D only the job-file will be created ---"
	226	printf "\n -h execution host, available hosts: $remote_host"
[693]	227	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
[1040]	228	printf "\n lckiaps, lctit, nech, necriam, unics"
[1]	229	printf "\n -m memory demand per process in MByte ---"
	230	printf "\n -n jobname <jobdatei>"
	231	printf "\n -O threads per task (for OpenMP usage) 1"
[1094]	232	printf "\n -P ssh/scp port default port"
[1]	233	printf "\n -q job-queue to be used default"
	234	printf "\n -t allowed cpu-time in seconds ---"
	235	printf "\n -T tasks per node (on parallel hosts) ---"
	236	printf "\n -u username on execution host from .netrc"
	237	printf "\n -v no prompt for confirmation ---"
	238	printf "\n -X # of processors (on parallel hosts) 1"
	239	printf "\n "
	240	printf "\n The only possible positional parameter is <jobfile>:"
	241	printf "\n The complete NQS-job must be provided here."
	242	printf "\n <jobfile>=? creates this outline\n\n") \| more
	243	exit
	244	fi
	245
	246
	247
	248	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	249	if [[ "$file_to_send" = "" ]]
	250	then
	251	printf "\n +++ job-file missing"
	252	locat=parameter; exit
	253	else
	254	if [[ -f $file_to_send ]]
	255	then
	256	true
	257	else
	258	printf "\n +++ job-file: "
	259	printf "\n $file_to_send"
	260	printf "\n does not exist"
	261	locat=parameter; exit
	262	fi
	263	fi
	264
	265
	266
	267	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	268	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	269	if [[ $job_name = none ]]
	270	then
	271	job_name=$file_to_send
	272	fi
	273	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	274	then
	275	printf "\n +++ job-file name: "
	276	printf "\n $job_name"
	277	printf "\n must not contain \"/\"-characters"
	278	locat=parameter; exit
	279	fi
	280
	281
	282
	283
	284	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	285	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	286	if [[ $remote_host = none ]]
	287	then
	288	printf "\n +++ host missing"
	289	locat=option; exit
	290	else
	291	case $remote_host in
[251]	292	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	293	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[693]	294	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[622]	295	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
[251]	296	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	297	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	298	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	299	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[540]	300	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
	301	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
[367]	302	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[1040]	303	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
[717]	304	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
[1090]	305	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
[1021]	306	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
[635]	307	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
[892]	308	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
[437]	309	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[693]	310	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
[251]	311	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	312	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	313	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	314	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	315	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	316	locat=parameter; exit;;
[1]	317	esac
	318	fi
	319
	320
	321	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	322	if [[ $no_default_queue != none ]]
	323	then
	324	error=false
	325	ndq=$no_default_queue
	326	case $remote_host in
	327	(ibm) case $ndq in
	328	(p690_express\|p690_standard\|p690_long) error=false;;
	329	(*) error=true;;
	330	esac;;
	331	(ibmh) case $ndq in
[312]	332	(no_class) error=false;;
[1]	333	(*) error=true;;
	334	esac;;
[693]	335	(ibmkisti) case $ndq in
	336	(class.32plus\|class.1-2\|class.2-32) error=false;;
	337	(*) error=true;;
	338	esac;;
[622]	339	(ibmku) case $ndq in
	340	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	341	(*) error=true;;
	342	esac;;
[1]	343	(ibms) case $ndq in
	344	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	345	(*) error=true;;
	346	esac;;
	347	(ibmy) case $ndq in
	348	(parallel) error=false;;
	349	(*) error=true;;
	350	esac;;
[1040]	351	(lckiaps) case $ndq in
	352	(express\|normal) error=false;;
	353	(*) error=true;;
	354	esac;;
[440]	355	(lckyoto) case $ndq in
	356	(eh\|ph) error=false;;
	357	(*) error=true;;
	358	esac;;
[1090]	359	(lckyut) case $ndq in
	360	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
	361	(*) error=true;;
	362	esac;;
[191]	363	(lcsgib\|lcsgih) case $ndq in
[416]	364	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	365	(*) error=true;;
	366	esac;;
[1]	367	(lctit) case $ndq in
[635]	368	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	369	(*) error=true;;
	370	esac;;
	371	(t3eb) case $ndq in
	372	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	373	(*) error=true;;
	374	esac;;
[251]	375	(necriam) case $ndq in
[253]	376	(SP\|SS\|P6) error=false;;
[251]	377	(*) error=true;;
	378	esac;;
[1]	379	(t3eh) case $ndq in
	380	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	381	(*) error=true;;
	382	esac;;
	383	(t3ej2\|t3ej5) case $ndq in
	384	(low\|normal\|high) error=false;;
	385	(*) error=true;;
	386	esac;;
	387	(t3es) case $ndq in
	388	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	389	(*) error=true;;
	390	esac;;
	391	(unics) case $ndq in
	392	(unics\|ht) error=false;;
	393	(*) error=true;;
	394	esac;;
	395	esac
	396	if [[ $error = true ]]
	397	then
	398	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	399	locat=parameter; exit
	400	else
	401	queue=$no_default_queue
	402	fi
	403	fi
	404
	405
	406
	407	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	408	# AUFTEILEN
	409	done=false
	410	while [[ $done = false ]]
	411	do
	412	if (( $cputime <= 0 ))
	413	then
	414	printf "\n +++ wrong cpu-time or cpu-time missing"
	415	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	416	printf "\n >>> "
	417	read cputime 1>/dev/null 2>&1
	418	else
	419	done=true
	420	fi
	421	done
	422	if [[ $remote_host = nech ]]
	423	then
	424	if (( tasks_per_node != 0 ))
	425	then
	426	(( cputime = cputime * tasks_per_node ))
	427	elif [[ $numprocs != 0 ]]
	428	then
	429	(( cputime = cputime * numprocs ))
	430	fi
	431	fi
	432	(( stunden = cputime / 3600 ))
	433	(( resttime = cputime - stunden * 3600 ))
	434	(( minuten = resttime / 60 ))
	435	(( sekunden = resttime - minuten * 60 ))
	436	timestring=${stunden}:${minuten}:${sekunden}
	437
	438
	439
	440	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	441	done=false
	442	while [[ $done = false ]]
	443	do
	444	if (( memory <= 0 ))
	445	then
	446	printf "\n +++ wrong memory demand or memory demand missing"
	447	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	448	printf "\n >>> "
	449	read memory 1>/dev/null 2>&1
	450	else
	451	done=true
	452	fi
	453	done
	454
[251]	455	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	456	then
	457	if (( tasks_per_node != 0 ))
	458	then
	459	(( Memory = memory * tasks_per_node / 1000 ))
	460	elif [[ $numprocs != 0 ]]
	461	then
	462	(( Memory = memory * numprocs / 1000 ))
	463	else
	464	(( Memory = memory / 1000 ))
	465	fi
[635]	466	elif [[ $remote_host = lctit ]]
	467	then
	468	(( Memory = memory * tasks_per_node / 1000 ))
[1]	469	fi
	470
	471
	472	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	473	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	474	then
	475	(( memory = memory * threads_per_task ))
	476	fi
	477
	478
	479	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	480	if (( tasks_per_node != 0 ))
	481	then
[622]	482	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
[1]	483	fi
	484
[1094]	485
[622]	486	# Calculate number of processes per node
	487	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	488
[1094]	489
[696]	490	# Calculate number of MPI tasks
	491	(( mpi_tasks = numprocs / threads_per_task ))
[1]	492
[696]	493
[1094]	494	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
	495	if [[ "$scp_port" != "" ]]
	496	then
	497	PORTOPT="-P $scp_port"
	498	SSH_PORTOPT="-p $scp_port"
	499	fi
	500
	501
[1]	502	# HEADER-AUSGABE
	503	if [[ $verify = true ]]
	504	then
	505	printf "\n\n"
	506	printf "#--------------------------------------------------------------# \n"
	507	spalte1=SUBJOB;spalte2=$(date)
	508	printf "\| $spalte1$spalte2 \| \n"
	509	printf "\| \| \n"
	510	printf "\| values of parameters/options: \| \n"
	511	spalte1=local_host$punkte; spalte2=$punkte$local_host
	512	printf "\| $spalte1$spalte2 \| \n"
	513	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	514	printf "\| $spalte1$spalte2 \| \n"
	515	spalte1=queue$punkte; spalte2=$punkte$queue
	516	printf "\| $spalte1$spalte2 \| \n"
	517	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	518	printf "\| $spalte1$spalte2 \| \n"
	519	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	520	printf "\| $spalte1$spalte2 \| \n"
	521	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	522	printf "\| $spalte1$spalte2 \| \n"
	523	printf "#--------------------------------------------------------------# \n\n"
	524
	525
	526	# KONTROLLABFRAGE, OB ALLES O.K.
	527	antwort="dummy"
	528	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	529	do
	530	read antwort?" >>> continue (y/n) ? "
	531	done
	532	if [[ $antwort = n \|\| $antwort = N ]]
	533	then
	534	locat=verify; exit
	535	fi
	536	printf "\n"
	537	fi
	538
	539
	540
	541	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	542	kennung=$RANDOM
	543	job_on_remhost=${job_name}_${kennung}_$local_host
	544	job_to_send=job_to_send_$kennung
	545	if [[ $delete_dayfile = false ]]
	546	then
	547	remote_dayfile=${local_host}_${job_name}_result_$kennung
	548	local_dayfile=${remote_host}_${job_name}
	549	else
	550	remote_dayfile=/dev/null
	551	fi
	552
	553
	554
[622]	555	# Generate the batch job scripts (qsub/msub/LoadLeveler)
[1]	556	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	557	then
	558
[622]	559	# General LoadLeveler settings
	560	execute_in_shell="#!/bin/ksh"
	561	use_shell="# @ shell = /bin/ksh"
	562	consumable_memory="ConsumableMemory($memory mb)"
	563	class="# @ class = $queue"
	564	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	565	network_to_use="# @ network.mpi = sn_all,shared,us"
	566	data_limit="# @ data_limit = 1.76gb"
	567	image_size="# @ image_size = 50"
[693]	568	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	569
[693]	570	if [[ $email_notification = none ]]
	571	then
	572	notify_user=""
	573	else
	574	notify_user="# @ notify_user = $email_notification"
	575	if [[ $delete_dayfile = true ]]
	576	then
	577	notification='# @ notification = never'
	578	fi
	579	fi
[622]	580
[312]	581	if [[ $remote_host = ibmh ]]
[1]	582	then
[312]	583	data_limit=""
	584	network_to_use=""
	585	class=""
	586	environment=""
[814]	587	rset="# @ rset = RSET_MCM_AFFINITY"
	588	task_affinity="# @ task_affinity = core(1)"
[693]	589	elif [[ $remote_host = ibmkisti ]]
	590	then
	591	network_to_use="# @ network.MPI = sn_all,shared,US"
	592	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	593	if [[ $threads_per_task = 1 ]]
	594	then
	595	rset="# @ rset = RSET_MCM_AFFINITY"
	596	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	597	fi
[693]	598	environment=""
	599	use_shell=""
	600	data_limit=""
	601	image_size=""
[622]	602	elif [[ $remote_host = ibmku ]]
	603	then
	604	execute_in_shell="#!/usr/bin/ksh"
	605	use_shell="# @ shell = /usr/bin/ksh"
	606	consumable_memory=""
	607	environment=""
	608	network_to_use="# @ network.mpi = sn_all,shared,us"
	609	data_limit=""
	610	image_size=""
	611	elif [[ $remote_host = ibms ]]
	612	then
	613	network_to_use="# @ network.mpi = csss,shared,us"
	614	elif [[ $remote_host = ibmy ]]
	615	then
	616	consumable_memory=""
	617	network_to_use=""
[1]	618	fi
	619
	620	cat > $job_to_send << %%END%%
[622]	621	$execute_in_shell
	622	$use_shell
[1]	623
	624	# @ job_type = parallel
[693]	625	# @ job_name = $job_name
[1]	626	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	627	# @ output = $remote_dayfile
	628	# @ error = $remote_dayfile
[693]	629	$wall_clock_limit
[622]	630	$image_size
[312]	631	$class
	632	$environment
[1]	633	$network_to_use
	634	$data_limit
[693]	635	$rset
	636	$mcm_affinity_options
[814]	637	$task_affinity
[1]	638	$notification
[693]	639	$notify_user
[1]	640
	641	%%END%%
	642
	643	if (( nodes > 0 ))
	644	then
	645
[693]	646	if [[ $remote_host != ibmkisti ]]
	647	then
	648
	649	cat >> $job_to_send << %%END%%
[1]	650	# @ node = $nodes
[622]	651	# @ tasks_per_node = $processes_per_node
[1]	652	# @ node_usage = $node_usage
	653	# @ queue
	654
	655	%%END%%
	656
[693]	657	else
	658
	659	cat >> $job_to_send << %%END%%
[696]	660	# @ total_tasks = $mpi_tasks
[693]	661	# @ blocking = unlimited
	662	# @ queue
	663
	664	%%END%%
	665
	666	fi
	667
[1]	668	else
	669
	670	if [[ $remote_host != ibmy ]]
	671	then
	672
	673	cat >> $job_to_send << %%END%%
	674	# @ blocking = unlimited
	675	# @ total_tasks = $numprocs
	676	# @ node_usage = $node_usage
	677	# @ queue
	678
	679	%%END%%
	680
	681	else
	682
	683	cat >> $job_to_send << %%END%%
	684	# @ node = 1
	685	# @ total_tasks = $numprocs
	686	# @ queue
	687
	688	%%END%%
	689
	690	fi
	691
	692	fi
	693
[696]	694	# workaround because of silly job filter on ibmkisti
	695	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	696	then
	697	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	698	fi
	699
[1]	700	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	701	then
	702
	703	cat > $job_to_send << %%END%%
	704	#!/bin/ksh
	705
	706	# @ job_type = serial
	707	# @ node_usage = $node_usage
	708	# @ job_name = palm
	709	# @ wall_clock_limit = ${timestring},$timestring
	710	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	711	# @ output = $remote_dayfile
	712	# @ error = $remote_dayfile
[312]	713	$class
[1]	714	$notification
	715
	716	# @ queue
	717
	718	%%END%%
	719
[108]	720	elif [[ $remote_host = lcfimm ]]
	721	then
	722
	723	if [[ $numprocs != 0 ]]
	724	then
	725	cat > $job_to_send << %%END%%
	726	#!/bin/ksh
	727	#PBS -N $job_name
[552]	728	#PBS -A $project_account
[108]	729	#PBS -l walltime=$timestring
[622]	730	#PBS -l nodes=${nodes}:ppn=$processes_per_node
[108]	731	#PBS -l pmem=${memory}mb
	732	#PBS -m abe
	733	#PBS -o $remote_dayfile
	734	#PBS -j oe
	735	mpd &
	736
	737	%%END%%
	738
[168]	739	else
	740	cat > $job_to_send << %%END%%
	741	#!/bin/ksh
	742	#PBS -N $job_name
[552]	743	#PBS -A $project_account
[168]	744	#PBS -l walltime=$timestring
	745	#PBS -l ncpus=1
	746	#PBS -l pmem=${memory}mb
	747	#PBS -m abe
	748	#PBS -o $remote_dayfile
	749	#PBS -j oe
	750
	751	%%END%%
	752
	753	fi
	754
[1021]	755	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	756	then
	757
	758	if [[ $numprocs != 0 ]]
	759	then
	760	cat > $job_to_send << %%END%%
	761	#!/bin/ksh
	762	#PBS -N $job_name
	763	#PBS -l walltime=$timestring
	764	#PBS -l ncpus=$numprocs
	765	#PBS -l pmem=${memory}mb
	766	#PBS -o $remote_dayfile
[1021]	767	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	768	#PBS -j oe
	769
	770	mpd &
	771
	772	%%END%%
	773
	774	else
	775	cat > $job_to_send << %%END%%
	776	#!/bin/ksh
	777	#PBS -N $job_name
	778	#PBS -l walltime=$timestring
	779	#PBS -l ncpus=1
	780	#PBS -l pmem=${memory}mb
	781	#PBS -o $remote_dayfile
	782	#PBS -j oe
	783
	784	%%END%%
	785
	786	fi
	787
[1040]	788	elif [[ $remote_host = lckiaps ]]
	789	then
	790
	791	if [[ $numprocs != 0 ]]
	792	then
	793	cat > $job_to_send << %%END%%
	794	#!/bin/ksh
	795	#PBS -N $job_name
	796	#PBS -l walltime=$timestring
	797	#PBS -l select=1:ncpus=$numprocs
	798	#PBS -l pmem=${memory}mb
	799	#PBS -q $queue
	800	#PBS -o $remote_dayfile
	801	#PBS -j oe
	802	#PBS -V
	803
	804	%%END%%
	805
	806	else
	807	cat > $job_to_send << %%END%%
	808	#!/bin/ksh
	809	#PBS -N $job_name
	810	#PBS -l walltime=$timestring
	811	#PBS -l ncpus=1
	812	#PBS -l pmem=${memory}mb
	813	#PBS -o $remote_dayfile
	814	#PBS -j oe
	815
	816	%%END%%
	817
	818	fi
	819
[693]	820	elif [[ $remote_host = lcyon ]]
	821	then
	822
	823	if [[ $numprocs != 0 ]]
	824	then
	825	cat > $job_to_send << %%END%%
	826	#!/bin/ksh
	827	#PBS -N $job_name
	828	#PBS -l walltime=$timestring
	829	#PBS -l ncpus=$numprocs
	830	#PBS -l pmem=${memory}mb
	831	#PBS -o $remote_dayfile
	832	#PBS -j oe
	833
	834	%%END%%
	835
	836	else
	837	cat > $job_to_send << %%END%%
	838	#!/bin/ksh
	839	#PBS -N $job_name
	840	#PBS -l walltime=$timestring
	841	#PBS -l ncpus=1
	842	#PBS -l pmem=${memory}mb
	843	#PBS -o $remote_dayfile
	844	#PBS -j oe
	845
	846	%%END%%
	847
	848	fi
	849
[181]	850	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	851	then
	852
[376]	853	if [[ "$sgi_feature" != "" ]]
	854	then
	855	feature_directive="#PBS -l feature=$sgi_feature"
	856	else
	857	feature_directive=""
	858	fi
[799]	859
[416]	860	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	861	then
	862	feature_directive="#PBS -l feature=data"
	863	fi
[376]	864
[789]	865	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	866	then
	867	queue_directive="#PBS -q $queue"
	868	else
	869	queue_directive=""
	870	fi
	871
[352]	872	if [[ $email_notification = none ]]
	873	then
	874	email_directive=""
	875	else
	876	email_directive="#PBS -M $email_notification"
	877	fi
	878
[179]	879	if [[ $numprocs != 0 ]]
	880	then
	881	cat > $job_to_send << %%END%%
[181]	882	#!/bin/bash
[179]	883	#PBS -N $job_name
	884	#PBS -l walltime=$timestring
[622]	885	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[181]	886	#PBS -l naccesspolicy=$node_usage
[179]	887	#PBS -o $remote_dayfile
	888	#PBS -j oe
[376]	889	$feature_directive
[191]	890	$queue_directive
[352]	891	$email_directive
[179]	892
[622]	893	eval \`/sw/swdist/bin/modulesinit\`
	894	#. /usr/share/modules/init/bash
[892]	895	$init_cmds
[493]	896	$module_calls
[374]	897
[181]	898	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	899
	900	%%END%%
	901
	902	else
	903	cat > $job_to_send << %%END%%
	904	#PBS -S /bin/bash
	905	#PBS -N $job_name
	906	#PBS -l walltime=$timestring
	907	#PBS -l ncpus=1
	908	#PBS -o $remote_dayfile
[475]	909	#PBS -j oe
[400]	910	$queue_directive
	911	$email_directive
[179]	912
[622]	913	eval \`/sw/swdist/bin/modulesinit\`
	914	#. /usr/share/modules/init/bash
[892]	915	$init_cmds
[493]	916	$module_calls
[475]	917
[179]	918	%%END%%
	919
	920	fi
	921
[892]	922	elif [[ $remote_host = lcxe6 ]]
[164]	923	then
	924
	925	if [[ $numprocs != 0 ]]
	926	then
	927	cat > $job_to_send << %%END%%
[799]	928	#!/bin/ksh
[164]	929	#PBS -S /bin/ksh
	930	#PBS -N $job_name
[552]	931	#PBS -A $project_account
[206]	932	#PBS -j oe
[164]	933	#PBS -l walltime=$timestring
	934	#PBS -l mppwidth=${numprocs}
[622]	935	#PBS -l mppnppn=${processes_per_node}
[164]	936	#PBS -m abe
	937	#PBS -o $remote_dayfile
[492]	938	$email_directive
[164]	939
[892]	940	$init_cmds
[493]	941	$module_calls
[343]	942
[164]	943	%%END%%
	944
[108]	945	else
	946	cat > $job_to_send << %%END%%
	947	#!/bin/ksh
[168]	948	#PBS -S /bin/ksh
[108]	949	#PBS -N $job_name
[552]	950	#PBS -A $project_account
[206]	951	#PBS -j oe
[108]	952	#PBS -l walltime=$timestring
	953	#PBS -l ncpus=1
	954	#PBS -l pmem=${memory}mb
	955	#PBS -m abe
[492]	956	$email_directive
[108]	957	#PBS -o $remote_dayfile
	958
[892]	959	$init_cmds
[493]	960	$module_calls
[343]	961
[108]	962	%%END%%
	963
	964	fi
	965
[440]	966	elif [[ $remote_host = lckyoto ]]
[437]	967	then
	968
[440]	969	cat > $job_to_send << %%END%%
[799]	970	#!/bin/ksh
[440]	971	# @\$-o $remote_dayfile
	972	# @\$-eo -oi
	973	# @\$-lP 16
[799]	974	# @\$-lp 1
[440]	975	# @\$-lm 28gb -llm unlimited -ls unlimited
	976	# @\$-q $queue
	977	# @\$-Pvn abs_pack
	978	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	979	#. /thin/local/etc/setprofile/intel-11.0.sh
	980	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	981	. ~/.myprofile
	982	#. /home2/t/t51254/palm/current_version/myprofile
	983	#. /thin/apps/pgi/mpi.sh
	984	#
	985	env
	986	#
	987	set -x
	988
	989	%%END%%
	990
	991	elif [[ $remote_host = lcxt5m ]]
	992	then
	993
[437]	994	if [[ $numprocs != 0 ]]
	995	then
	996	cat > $job_to_send << %%END%%
[799]	997	#!/bin/ksh
[437]	998	#PBS -S /bin/ksh
	999	#PBS -N $job_name
	1000	#PBS -j oe
	1001	#PBS -l walltime=$timestring
	1002	#PBS -l mppwidth=${numprocs}
[622]	1003	#PBS -l mppnppn=${processes_per_node}
[437]	1004	#PBS -m abe
	1005	#PBS -o $remote_dayfile
	1006
[892]	1007	$init_cmds
[493]	1008	$module_calls
[437]	1009
	1010	%%END%%
	1011
	1012	else
	1013	cat > $job_to_send << %%END%%
	1014	#!/bin/ksh
	1015	#PBS -S /bin/ksh
	1016	#PBS -N $job_name
	1017	#PBS -j oe
	1018	#PBS -l walltime=$timestring
	1019	#PBS -l ncpus=1
	1020	#PBS -l pmem=${memory}mb
	1021	#PBS -m abe
	1022	#PBS -o $remote_dayfile
	1023
[892]	1024	$init_cmds
[493]	1025	$module_calls
[437]	1026
	1027	%%END%%
	1028
	1029	fi
	1030
[1090]	1031	elif [[ $remote_host = lckyut ]]
	1032	then
	1033	cat > $job_to_send << %%END%%
	1034	#!/bin/bash
	1035	#PJM -L "vnode=$numprocs"
	1036	#PJM -L "vnode-core=1"
	1037	#PJM -L "rscgrp=$queue"
	1038	#PJM --no-stging
	1039	#PJM -L "elapse=$timestring"
	1040	#PJM --mpi proc=$numprocs
	1041	#PJM -o $remote_dayfile
	1042	#PJM -j
	1043
	1044	export LANG=en_US.UTF-8
	1045	%%END%%
	1046
[1]	1047	elif [[ $remote_host = nech ]]
	1048	then
	1049
	1050	if (( nodes > 1 ))
	1051	then
	1052	cat > $job_to_send << %%END%%
	1053	#!/bin/ksh
[622]	1054	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1055	#PBS -l ${qsubmem}=${Memory}gb
	1056	#PBS -b $nodes
	1057	#PBS -o $remote_dayfile
	1058	#PBS -N palm
	1059	#PBS -j o
	1060	#PBS -T mpisx
	1061
	1062	%%END%%
	1063
	1064	elif [[ $numprocs != 0 ]]
	1065	then
	1066	cat > $job_to_send << %%END%%
	1067	#!/bin/ksh
[622]	1068	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1069	#PBS -l ${qsubmem}=${Memory}gb
	1070	#PBS -o $remote_dayfile
	1071	#PBS -N palm
	1072	#PBS -j o
	1073
	1074	%%END%%
	1075
	1076	else
	1077	cat > $job_to_send << %%END%%
	1078	#!/bin/ksh
	1079	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1080	#PBS -o $remote_dayfile
	1081	#PBS -j o
	1082
	1083	%%END%%
	1084
	1085	fi
	1086
[251]	1087	elif [[ $remote_host = necriam ]]
[35]	1088	then
	1089
	1090	if (( nodes > 1 ))
	1091	then
	1092	cat > $job_to_send << %%END%%
	1093	#!/bin/ksh
	1094	#PBS -b $nodes
	1095	#PBS -o $remote_dayfile
[253]	1096	#PBS -N $job_name
[35]	1097	#PBS -j o
[251]	1098	#PBS -v MPIPROGINV=YES
[35]	1099
	1100	%%END%%
	1101
	1102	elif [[ $numprocs != 0 ]]
	1103	then
	1104	cat > $job_to_send << %%END%%
	1105	#!/bin/ksh
	1106	#PBS -q ${queue}
	1107	#PBS -o $remote_dayfile
[253]	1108	#PBS -N $job_name
[35]	1109	#PBS -j o
[251]	1110	#PBS -v MPIPROGINV=YES
[35]	1111
	1112	%%END%%
	1113
	1114	else
	1115	cat > $job_to_send << %%END%%
	1116	#!/bin/ksh
	1117	#PBS -o $remote_dayfile
	1118	#PBS -j o
	1119
	1120	%%END%%
	1121
	1122	fi
	1123
[1]	1124	elif [[ $remote_host = lctit ]]
	1125	then
	1126	cat > $job_to_send << %%END%%
[635]	1127	#!/bin/ksh
[892]	1128	$init_cmds
[678]	1129	$module_calls
	1130
[1]	1131	%%END%%
	1132
	1133	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[678]	1134	if [[ $tasks_per_node != $processes_per_node ]]
	1135	then
	1136	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
	1137	else
	1138	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
	1139	fi
[1]	1140
	1141	else
	1142
	1143	cat > $job_to_send << %%END%%
	1144	# @\$-q ${queue}
	1145	# @\$-l${qsubtime} $timestring
	1146	# @\$-l${qsubmem} ${memory}mb
	1147	# @\$-o $remote_dayfile
	1148	# @\$-eo
	1149
	1150	%%END%%
	1151
	1152	fi
	1153
	1154
	1155	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1156	# BEI EXIT VERANLASSEN
	1157	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1158	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1159	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1160	then
	1161	echo "set +vx" >> $job_to_send
	1162	echo "trap '" >> $job_to_send
	1163	echo "set +vx" >> $job_to_send
[1090]	1164	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps \|\| $remote_host = lckyut ]]
[1]	1165	then
[622]	1166	if [[ $remote_host = ibmh ]]
[1]	1167	then
	1168	return_queue=c1
[693]	1169	elif [[ $remote_host = ibmkisti ]]
	1170	then
	1171	return_queue=class.1-2
[622]	1172	elif [[ $remote_host = ibmku ]]
	1173	then
	1174	return_queue=sdbg2
[1]	1175	elif [[ $remote_host = ibms ]]
	1176	then
	1177	return_queue=p_normal
	1178	elif [[ $remote_host = ibmy ]]
	1179	then
	1180	return_queue=serial
[325]	1181	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1182	then
[326]	1183	return_queue=serialq
[251]	1184	elif [[ $remote_host = necriam ]]
[1]	1185	then
[253]	1186	return_queue=SP
[1040]	1187	elif [[ $remote_host = lckiaps ]]
	1188	then
	1189	return_queue=express
[1090]	1190	elif [[ $remote_host = lckyut ]]
	1191	then
	1192	return_queue=cx-single
[1]	1193	else
	1194	return_queue=unknown
	1195	fi
	1196
	1197	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1198	then
	1199
[622]	1200	if [[ $remote_host = ibmku ]]
	1201	then
	1202	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1203	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1204	else
	1205	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1206	fi
[1]	1207	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1208	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1209	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1210	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1211	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1212	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1213	if [[ $host != "ibmh" ]]
	1214	then
	1215	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1216	fi
[1]	1217	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1218	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1219
	1220	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1221	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1222
	1223	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
[1094]	1224	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
[622]	1225	if [[ $remote_host = ibmku ]]
	1226	then
	1227	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
	1228	fi
[1]	1229	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1230
	1231	elif [[ $remote_host = nech ]]
	1232	then
	1233	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1234	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1235	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1236	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1237	echo "#PBS -j o" >> $job_to_send
	1238	echo " " >> $job_to_send
	1239	echo "set -x" >> $job_to_send
	1240	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
[1094]	1241	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1]	1242	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1243	echo "%%END%%" >> $job_to_send
	1244
[251]	1245	elif [[ $remote_host = necriam ]]
[35]	1246	then
	1247	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1248	echo "#PBS -q $return_queue" >> $job_to_send
	1249	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1250	echo "#PBS -j o" >> $job_to_send
	1251	echo " " >> $job_to_send
	1252	echo "set -x" >> $job_to_send
[1094]	1253	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[35]	1254	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1255	echo "%%END%%" >> $job_to_send
	1256
[1090]	1257	elif [[ $remote_host = lckyut ]]
	1258	then
	1259	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1260	echo "#!/bin/bash" >> $job_to_send
	1261	echo "#PJM -L \"vnode=1\"" >> $job_to_send
	1262	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
	1263	echo "#PJM --no-stging" >> $job_to_send
	1264	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
	1265	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1266	echo "#PJM -j" >> $job_to_send
	1267	echo " " >> $job_to_send
	1268	echo "export LANG=en_US.UTF-8" >> $job_to_send
	1269	echo "set -x" >> $job_to_send
[1094]	1270	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[1090]	1271	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1272	echo "%%END%%" >> $job_to_send
	1273
[181]	1274	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1275	then
	1276	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1277	echo "#!/bin/bash" >> $job_to_send
	1278	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1279	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1280	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1281	echo "#PBS -l feature=data" >> $job_to_send
[181]	1282	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1283	echo "#PBS -j oe" >> $job_to_send
	1284	echo " " >> $job_to_send
	1285	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1286	echo "set -x" >> $job_to_send
[1094]	1287	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
[181]	1288	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1289	echo "%%END%%" >> $job_to_send
	1290
[1]	1291	else
	1292
	1293	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1294	echo "# @\\\$-q $return_queue" >> $job_to_send
	1295	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1296	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1297	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1298	then
	1299	echo "# @\$-l mpp_p=0" >> $job_to_send
	1300	fi
	1301	echo '# @\$-lF 10mb' >> $job_to_send
	1302	# echo '# @\$-o /dev/null' >> $job_to_send
	1303	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1304	echo '# @\\\$-eo' >> $job_to_send
	1305	echo " " >> $job_to_send
	1306	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1307	then
	1308	echo "set +vx" >> $job_to_send
	1309	echo ". .profile" >> $job_to_send
	1310	fi
	1311	echo "set -x" >> $job_to_send
[1094]	1312	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
[1]	1313	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1314	echo "%%END%%" >> $job_to_send
	1315	fi
	1316
	1317	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1318	then
	1319	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1320	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1321	then
[748]	1322	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1323	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1324	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1325	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1326	then
	1327	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1328	elif [[ $remote_host = t3es ]]
	1329	then
	1330	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
[1043]	1331	elif [[ $remote_host = lckiaps ]]
	1332	then
	1333	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
[1094]	1334	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
[1043]	1335	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
[1090]	1336	elif [[ $remote_host = lckyut ]]
	1337	then
[1094]	1338	echo "scp $PORTOPT scpjob.$kennung ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
	1339	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$kennung; rm scpjob.$kennung\" " >> $job_to_send
[1]	1340	else
[1040]	1341	echo "$submcom scpjob.$kennung" >> $job_to_send
[1]	1342	fi
[1043]	1343	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1344	then
	1345	echo "rm scpjob.$kennung" >> $job_to_send
	1346	fi
[1]	1347	if [[ $remote_host = nech ]]
	1348	then
	1349	echo "cd -" >> $job_to_send
	1350	fi
	1351	else
	1352	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1353	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1354	fi
	1355	echo "set -x" >> $job_to_send
	1356	echo " ' exit" >> $job_to_send
	1357	echo "set -x" >> $job_to_send
	1358	fi
	1359
	1360
	1361
	1362	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1363	cat $file_to_send >> $job_to_send
[69]	1364
[1]	1365	if [[ $remote_host = ibm ]]
	1366	then
	1367	echo " " >> $job_to_send
	1368	echo "exit" >> $job_to_send
	1369	fi
[635]	1370
	1371	# remove job file
[622]	1372	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
[69]	1373	then
	1374	echo " " >> $job_to_send
	1375	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1376	fi
[1]	1377
	1378
	1379
	1380	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1381	if [[ -z $remote_user ]]
	1382	then
	1383	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1384	then
	1385	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1386	fi
	1387	fi
	1388
	1389
	1390
	1391	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1392	if [[ $no_submit = false ]]
	1393	then
	1394	if [[ $remote_host != $local_host ]]
	1395	then
	1396	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1397	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1398	then
[82]	1399	job_catalog_save=$job_catalog
	1400	job_catalog=job_queue
	1401	elif [[ $remote_host = nech ]]
	1402	then
	1403	job_catalog_save=$job_catalog
	1404	job_catalog=/hpf/b/${remote_user}/job_queue
	1405	fi
[1096]	1406	if [[ $remote_host = nech ]]
[82]	1407	then
	1408	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1409	# TRANSFERIERT WERDEN
[1094]	1410	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1411	else
[1094]	1412	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1413	fi
[82]	1414	if [[ $? = 1 ]]
	1415	then
	1416	locat=scp; exit
	1417	fi
	1418	if [[ $remote_host = ibms ]]
	1419	then
	1420	job_catalog=$job_catalog_save
	1421	fi
[1]	1422	[[ $verify = true ]] && printf "\n >>> finished\n"
	1423	else
	1424	eval job_catalog=$job_catalog
	1425	cp $job_to_send ${job_catalog}/$job_on_remhost
	1426	fi
	1427
	1428
	1429
	1430	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1431	if [[ $remote_host != $local_host ]]
	1432	then
	1433	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1434
	1435	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
[1]	1436	then
[635]	1437	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
[1094]	1438	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
[635]	1439	elif [[ $remote_host = ibmku ]]
	1440	then
[1094]	1441	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1]	1442	else
[1094]	1443	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1444	fi
[1]	1445
	1446	[[ $verify = true ]] && printf " >>> o.k.\n"
	1447	else
	1448	cd $job_catalog
[210]	1449	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1450	then
	1451	eval $submcom $job_on_remhost
[1090]	1452	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyut ]]
[108]	1453	then
[635]	1454	chmod u+x $job_on_remhost
	1455	echo "$submcom $job_on_remhost"
[108]	1456	eval $submcom $job_on_remhost
[1]	1457	elif [[ $local_host = nech ]]
	1458	then
	1459	if [[ $queue = default ]]
	1460	then
[799]	1461	eval $submcom $job_on_remhost
[1]	1462	else
[799]	1463	eval $submcom -q $queue $job_on_remhost
[1]	1464	fi
	1465	else
	1466	qsub $job_on_remhost
	1467	fi
[622]	1468
	1469	# Jobfile must not be deleted on lctit/ibmku!! This will be done
	1470	# only at the end of the job.
	1471	if [[ $local_host != lctit && $local_host != ibmku ]]
	1472	then
	1473	rm $job_on_remhost
	1474	fi
[1]	1475	cd - > /dev/null
	1476	fi
	1477	fi
	1478
	1479
	1480
	1481	# ABSCHLUSSARBEITEN
	1482
	1483	if [[ $no_submit = false ]]
	1484	then
	1485	rm $job_to_send
	1486	fi
	1487	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |