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source: palm/trunk/SCRIPTS/subjob @ 1047

Last change on this file since 1047 was 1047, checked in by maronga, 11 years ago
last commit documented / added nc2vdf
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[1]	1	#!/bin/ksh
[1046]	2	#--------------------------------------------------------------------------------#
	3	# This file is part of PALM.
	4	#
	5	# PALM is free software: you can redistribute it and/or modify it under the terms
	6	# of the GNU General Public License as published by the Free Software Foundation,
	7	# either version 3 of the License, or (at your option) any later version.
	8	#
	9	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
	10	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
	11	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
	12	#
	13	# You should have received a copy of the GNU General Public License along with
	14	# PALM. If not, see <http://www.gnu.org/licenses/>.
	15	#
	16	# Copyright 1997-2012 Leibniz University Hannover
	17	#--------------------------------------------------------------------------------#
	18	#
	19	# Current revisions:
	20	# -----------------
	21	#
	22	# Former revisions:
	23	# -----------------
[169]	24	# $Id: subjob 1047 2012-11-09 15:32:58Z maronga $
[1047]	25	#
	26	# 1046 2012-11-09 14:38:45Z maronga
	27	# code put under GPL (PALM 3.9)
	28	#
[1046]	29	# subjob - Plot-Shellskript Version: @(#)SUBJOB 1.0
[1]	30	# Prozedur zum automatischen Generieren von Batch-Jobs, die unter NQS
	31	# laufen sollen und deren Ergebnis (Dayfile) zum Job-generierenden
	32	# Host zurueckgeschickt werden sollen
	33
	34
	35	# letzte Aenderung:
	36	# 29/06/94 - Siggi - Beginn mit Erstellung der Originalversion
	37	# 08/07/94 - Siggi - Originalversion abgeschlossen (Version 1.0)
	38	# 06/02/98 - Siggi - berte validiert
	39	# 27/01/01 - Siggi - ground.yonsei.ac.kr validiert, Jobs zur T3E in Korea
	40	# moeglich
	41	# 08/02/01 - Siggi - alle subjob-Meldungen ins englische uebersetzt
	42	# 25/05/02 - Siggi - Unterstuetzung des LoadLeveler
	43	# 30/05/02 - Siggi - Validierung fuer ibm-Rechner in Seoul (nobel) sowie
	44	# allgemeine Anpassungen fuer ibm-Rechner
	45	# 15/10/02 - Siggi - Neue Default-Jobklasse (p_normal) fuer IBM in Seoul
	46	# Ruecktransfer des Jobprotokolls fuer diese
	47	# Maschine abgeschaltet
	48	# 31/10/02 - Siggi - berni validiert
	49	# 06/11/02 - Siggi - Neue Jobklassen auf ibmb und ibmh
	50	# 08/11/02 - Siggi - quanero validiert
	51	# 11/12/02 - Siggi - Notification fuer Transfer-Jobs abgeschaltet
	52	# 23/01/03 - Siggi - hostname nobel changed to nobela
	53	# 06/02/03 - Siggi - gregale validated
	54	# 12/02/03 - Siggi - orkan and maestro validated
	55	# 21/02/03 - Siggi - all nobel nodes in Seoul validated
	56	# 12/03/03 - Siggi - nec at DKRZ validated
	57	# 13/03/03 - Siggi - new nqs resource variable Memory
	58	# 07/04/03 - Siggi - processor request option -c on nech needs tasks per
	59	# node
	60	# 11/04/03 - Siggi - network on ibms has attribute "shared"
	61	# 31/07/03 - Siggi - nqs2 on nech implemented (provisional: -h nech2)
	62	# cxxl added to ibmh
	63	# 29/08/03 - Siggi - changes in job queues and communication system on
	64	# ibms
	65	# 24/10/03 - Siggi - using alternate hanni address 130.75.4.2
	66	# 30/10/03 - Siggi - nech is not supported any more
	67	# 10/11/03 - Siggi - nech2 renamed to nech
	68	# 20/11/03 - Siggi - submit command on nech changed from qsub.test to qsub
	69	# 29/03/04 - Siggi - ground not supported any more, gfdl3 validated
	70	# 31/03/04 - Siggi - new option -N for node usage
	71	# 12/04/04 - Siggi - scp2 instead of scp used for transfer from decalpha
	72	# due to error in ssh installation (otherwise a prompt
	73	# for the password appears)
	74	# 23/07/04 - Siggi - changes due to the new berni configuration
	75	# (federation switch)
	76	# 01/09/04 - Gerald new job-classes on hanni
	77	# 08/09/04 - Siggi - hanni IP address changed to 130.75.4.10
	78	# 23/11/04 - Siggi - new job class cdata on hanni and berni
	79	# 03/12/04 - Siggi - notification on ibm switched of in case of
	80	# delete_dayfile = true, node usage in cdev set to
	81	# shared
	82	# 16/02/05 - Gerald hababai validated
	83	# 29/03/05 - Micha - new job class channi on hanni
	84	# 11/05/05 - Siggi - ConsumableMemory is now required as resource keyword
	85	# on ibms
	86	# 24/05/05 - Siggi - Default queue on ibms changed from p_normal_1.3 to
	87	# p_normal
	88	# 30/06/05 - Siggi - network changed for queue cdev from "us" to "ip"
	89	# 12/07/05 - Siggi - in network.mpi on ibmh/ibmb "csss" changed to
	90	# "sn_all", new job class cexp
	91	# 08/09/05 - Siggi - IP-address of gfdl3 changed
	92	# 31/10/05 - Siggi - new job class pp on hurricane, serial jobs on
	93	# hurricane (with -X0)
	94	# 01/11/05 - Siggi - missing queue for jobs submitted on nech (for nech)
	95	# added
	96	# 30/12/05 - Siggi - change of IP adresses in subnet 130.75.105
	97	# 09/02/06 - Siggi - ibmy admitted
	98	# 10/02/06 - Siggi - scp2 changed to /bin/scp on decalpha
	99	# 13/04/06 - Siggi - ostria admitted
	100	# 18/04/06 - Siggi - new option -O for OpenMP usage
	101	# 24/05/06 - Siggi - lctit admitted, ftpjob renamed scpjob
	102	# 25/07/06 - Siggi - gfdl5 (ibmy) admitted for submitting jobs
	103	# 27/09/06 - Siggi - breg/hreg extended with berni/hanni
	104	# 25/10/06 - Siggi - data_limit set to 1.76 GByte on hanni and berni
	105	# 28/11/06 - Siggi - levanto admitted
[5]	106	# 13/02/07 - Siggi - hpmuk releated code removed
[35]	107	# 01/03/07 - Siggi - adjustments for RIAM machines gate and NEC-SX8 (n-sx)
[82]	108	# 12/04/07 - Siggi - option -f (filetransfer protocol) removed, scp only
[102]	109	# 27/07/07 - Siggi - autan admitted
[108]	110	# 03/08/07 - Marcus- lcfimm admitted
[113]	111	# 08/10/07 - Siggi - further job classes added for hanni (csoloh...)
[118]	112	# 15/10/07 - Siggi - preliminary adjustments for lctit based on Jin's
	113	# suggestions
[122]	114	# 19/10/07 - Marcus- add new optional argument -g group_number
[125]	115	# 19/10/07 - Siggi - a ";" was missing in the last change done by Marcus
[129]	116	# 30/10/07 - Marcus- further adjustments for queues on lctit
[164]	117	# 15/05/08 - Siggi - adjustments for lcxt4 (Bergen Center for Computational
	118	# Science)
[179]	119	# 14/07/08 - Siggi - adjustments for lcsgih
[205]	120	# 23/09/08 - Gerald- paesano admitted
[206]	121	# 02/10/08 - Siggi - PBS adjustments for lcxt4
[251]	122	# 02/03/09 - Siggi - Adjustments for new NEC-SX9 at RIAM
[292]	123	# 16/04/09 - Marcus- Adjustments for lcsgib and lcsgih
[312]	124	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
[325]	125	# 18/05/09 - Siggi - Settings for serial jobs on lcsgi changed
[343]	126	# 24/06/09 - BjornM- adjustments for lcxt4 (loading modules manually)
[352]	127	# 08/07/09 - Siggi - option -e added (email notification on lcsgih/b)
[366]	128	# 20/07/09 - Siggi - On lcsgi, jobs for returning the job protocol are
	129	# now run on the data nodes (feature=data)
[367]	130	# 25/08/09 - BjornM- adapted for lck
[372]	131	# 26/08/09 - Marcus- caurus admitted; optional qos feature hiprio on lcsgi
[376]	132	# 03/09/09 - Siggi - PBS sgi feature directive only used if explicitly
	133	# set in the config file by the user
[416]	134	# 16/10/09 - Carolin-adjustments for archiving on SGI-ICE of binary files;
	135	# adding special1q
[407]	136	# 01/12/09 - BjornM- re-adjustments for lcxt4, added sno (130.75.105.113)
[416]	137	# 16/10/09 - Carolin-adding permq
[440]	138	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
[475]	139	# 03/02/10 - Siggi - bug in serial jobs removed
[492]	140	# 26/02/10 - BjornM- re-adjustments for lcxt4 (new modules, email
	141	# notification)
[493]	142	# 01/03/10 - Siggi - loading of modules controlled by environment variable
	143	# module_calls
[551]	144	# 17/08/10 - BjornM- re-adjustments for lcxt4 (location of qsub)
	145	# 25/08/10 - BjornM- account geofysisk replaced by guest for lcxt4
[552]	146	# 25/08/10 - Siggi - new variable project_account in pbs-statements for
	147	# lcxt4
[622]	148	# 08/12/10 - Siggi - initialization of the module command changed for
	149	# SGI-ICE/lcsgi
	150	# adjustments for Kyushu Univ. (lcrte, ibmku)
[635]	151	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
	152	# institute of technology (lctit)
[678]	153	# 02/02/11 - Siggi - further asjustments for Tsubame concerning openMP
[693]	154	# 06/03/11 - Siggi - adjustments for ibmkisti
[696]	155	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
[717]	156	# 03/04/11 - Micha - added lckordi
[739]	157	# 17/08/11 - Siggi - hicegate0 added
[748]	158	# 18/08/11 - Siggi - workaround on lcsgi in order to avoid appends to file
	159	# last_job_transfer_protocol
[749]	160	# 21/08/11 - Siggi - inferno admitted
[789]	161	# 29/11/11 - Siggi - adjustments for lcsgih/lcsgib queues, pingui admitted
[800]	162	# 21/12/11 - Theres- solano admitted
[892]	163	# 31/01/12 - Matthias - adjustments for ibmh
	164	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
	165	# bugfixes for the parameter file check, initial
	166	# commands on ssh calls sourced out to .mrun.config
[1021]	167	# 02/10/12 - Siggi - adjustments for lcsb
[1040]	168	# 01/11/12 - Siggi - adjustments for lckiaps
[1]	169
[437]	170
[1021]	171
[1]	172	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
[352]	173	delete_dayfile=false
[799]	174	email_notification=none
[122]	175	group_number=none
[1]	176	locat=normal
	177	no_default_queue=none
	178	no_submit=false
	179	job_catalog="~/job_queue"
	180	job_name=none
	181	local_user=$LOGNAME
	182	node_usage=shared
[475]	183	numprocs=0
[1]	184	punkte="..........................................................."
	185	submcom=qsub
	186	queue=default
	187	remote_host=none
	188	remote_user=""
	189	verify=true
	190
	191	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
[696]	192	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
[1]	193	typeset -L20 spalte1
	194	typeset -R40 spalte2
	195	typeset -L60 spalte3
	196
	197
	198
	199	# FEHLERBEHANDLUNG
	200	# BEI EXIT:
	201	trap 'if [[ $locat != normal ]]
	202	then
	203	case $locat in
	204	(option) printf "\n --> available optios can be displayed"
	205	printf " by typing:"
	206	printf "\n \"subjob ?\" \n";;
	207	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
	208	(*) printf "\n +++ unknown error"
	209	printf "\n please inform S. Raasch!\n"
	210	esac
	211	[[ -f $job_to_send ]] && rm $job_to_send
	212	printf "\n\n+++ SUBJOB killed \n\n"
	213	fi' exit
	214
	215
	216	# BEI TERMINAL-BREAK:
	217	trap '[[ -f $job_to_send ]] && rm $job_to_send
	218	printf "\n\n+++ SUBJOB killed \n\n"
	219	exit
	220	' 2
	221
	222
	223
	224
	225	# LOKALEN HOSTNAMEN FESTSTELLEN
	226	local_host=$(hostname)
	227
	228
	229
	230	# HOSTSPEZIFISCHE VARIABLEN VEREINBAREN BZW. PRUEFEN, OB LOKALER HOST
	231	# UEBERHAUPT ZULAESSIG IST
[717]	232	# Note: One of the entries for "lck" or "lckordi" always has to be
	233	# comment out, because the hostname (node*) is same for both machines
[1]	234	case $local_host in
	235	(atmos) local_addres=172.20.25.35; local_host=lcide;;
[102]	236	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
[5]	237	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
[400]	238	(bd1) local_addres=130.73.232.64; local_host=lcsgib;;
	239	(bd2) local_addres=130.73.232.65; local_host=lcsgib;;
	240	(bd3) local_addres=130.73.232.66; local_host=lcsgib;;
	241	(bd4) local_addres=130.73.232.67; local_host=lcsgib;;
	242	(b01*\|bicegate1) local_addres=130.73.232.102; local_host=lcsgib;;
[291]	243	(bicegate2) local_addres=130.73.232.103; local_host=lcsgib;;
[749]	244	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
[12]	245	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
[372]	246	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
[693]	247	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
[108]	248	(compute-*.local) local_addres=172.20.4.2; local_host=lcfimm;;
[1]	249	(cs*) local_addres=136.172.44.131; local_host=nech;;
[5]	250	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
[108]	251	(fimm.bccs.uib.no) local_addres=172.20.4.2; local_host=lcfimm;;
[367]	252	(node*) local_addres=165.132.26.61 local_host=lck;;
[717]	253	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
[693]	254	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
[101]	255	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
[1]	256	(gfdl5) local_addres=165.132.26.58; local_host=ibmy;;
	257	(gfdl3.yonsei.ac.kr) local_addres=165.132.26.56; local_host=decalpha;;
[5]	258	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
	259	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
[892]	260	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
[400]	261	(hd1) local_addres=130.75.4.104; local_host=lcsgih;;
	262	(hd2) local_addres=130.75.4.105; local_host=lcsgih;;
	263	(hd3) local_addres=130.75.4.106; local_host=lcsgih;;
	264	(hd4) local_addres=130.75.4.107; local_host=lcsgih;;
[739]	265	(hicegate0) local_addres=130.75.4.101; local_host=lcsgih;;
[292]	266	(h01*\|hicegate1) local_addres=130.75.4.102; local_host=lcsgih;;
[210]	267	(hicegate2) local_addres=130.75.4.103; local_host=lcsgih;;
[440]	268	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
[749]	269	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
[5]	270	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
[407]	271	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
[5]	272	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
[1040]	273	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
[5]	274	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
[437]	275	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
[892]	276	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
[1]	277	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
[5]	278	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
	279	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
[205]	280	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
[789]	281	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
[5]	282	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
[622]	283	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
[1]	284	(scirocco) local_addres=172.20.25.41; local_host=lcmuk;;
[799]	285	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
[1]	286	(sun1\|sun2) local_addres=130.75.6.1; local_host=unics;;
[259]	287	(sx-*) local_addres=172.16.1.131; local_host=necriam;;
[181]	288	(r1*) local_addres=130.75.4.102; local_host=lcsgih;;
[196]	289	(r2*) local_addres=130.73.232.102; local_host=lcsgib;;
[635]	290	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
[1021]	291	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
[1]	292	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
[622]	293	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
[1]	294	(*) printf "\n +++ \"$local_host\" unknown";
	295	printf "\n please inform S. Raasch!";
	296	locat=parameter; exit;;
	297	esac
	298
	299
	300
	301	# REMOTE HOST DEFAULTMAESSIG = LOCAL HOST SETZEN
	302	remote_host=$local_host
	303
	304
	305
	306
	307	# PROZEDUROPTIONEN EINLESEN
[352]	308	while getopts :c:dDe:g:h:m:n:N:O:q:t:T:u:vX: option
[1]	309	do
	310	case $option in
	311	(c) job_catalog=$OPTARG;;
	312	(d) delete_dayfile=true;;
	313	(D) no_submit=true;;
[352]	314	(e) email_notification=$OPTARG;;
[125]	315	(g) group_number=$OPTARG;;
[1]	316	(h) remote_host=$OPTARG;;
	317	(m) memory=$OPTARG;;
	318	(n) job_name=$OPTARG;;
	319	(N) node_usage=$OPTARG;;
	320	(O) threads_per_task=$OPTARG;;
	321	(q) no_default_queue=$OPTARG;;
	322	(t) cputime=$OPTARG;;
	323	(T) tasks_per_node=$OPTARG;;
	324	(u) remote_user=$OPTARG;;
	325	(v) verify=false;;
	326	(X) numprocs=$OPTARG;;
	327	(\?) printf "\n +++ Option $OPTARG unknown \n";
	328	locat=option; exit;;
	329	esac
	330	done
	331
	332
	333	# JOBDATEINAMEN ALS NAECHSTES ARGUMENT HOLEN
	334	shift OPTIND-1; file_to_send=$1
	335
	336
	337	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	338	if [ "$1" = "?" ]
	339	then
	340	(printf "\n *** subjob can be called as follows:\n"
	341	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
	342	printf "\n Description of available options:\n"
	343	printf "\n Option Description Default-Value"
	344	printf "\n -c job-input- and output-catalog ~/job_queue"
	345	printf "\n -d no job-protocol will be created ---"
	346	printf "\n -D only the job-file will be created ---"
	347	printf "\n -h execution host, available hosts: $remote_host"
[693]	348	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, ibmy, lc...,"
[1040]	349	printf "\n lckiaps, lctit, nech, necriam, unics"
[1]	350	printf "\n -m memory demand per process in MByte ---"
	351	printf "\n -n jobname <jobdatei>"
	352	printf "\n -O threads per task (for OpenMP usage) 1"
	353	printf "\n -q job-queue to be used default"
	354	printf "\n -t allowed cpu-time in seconds ---"
	355	printf "\n -T tasks per node (on parallel hosts) ---"
	356	printf "\n -u username on execution host from .netrc"
	357	printf "\n -v no prompt for confirmation ---"
	358	printf "\n -X # of processors (on parallel hosts) 1"
	359	printf "\n "
	360	printf "\n The only possible positional parameter is <jobfile>:"
	361	printf "\n The complete NQS-job must be provided here."
	362	printf "\n <jobfile>=? creates this outline\n\n") \| more
	363	exit
	364	fi
	365
	366
	367
	368	# PRUEFEN, OB JOBDATEI ANGEGEBEN WURDE UND OB SIE AUCH EXISTIERT
	369	if [[ "$file_to_send" = "" ]]
	370	then
	371	printf "\n +++ job-file missing"
	372	locat=parameter; exit
	373	else
	374	if [[ -f $file_to_send ]]
	375	then
	376	true
	377	else
	378	printf "\n +++ job-file: "
	379	printf "\n $file_to_send"
	380	printf "\n does not exist"
	381	locat=parameter; exit
	382	fi
	383	fi
	384
	385
	386
	387	# FALLS KEIN JOBNAME ANGEGEBEN WURDE, WIRD JOBNAME = JOBDATEINAME
	388	# GESETZT. VORAUSSETZUNG: JOBDATEINAME BEINHALTET KEINE PFADE
	389	if [[ $job_name = none ]]
	390	then
	391	job_name=$file_to_send
	392	fi
	393	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
	394	then
	395	printf "\n +++ job-file name: "
	396	printf "\n $job_name"
	397	printf "\n must not contain \"/\"-characters"
	398	locat=parameter; exit
	399	fi
	400
	401
	402
	403
	404	# HOSTSPEZIFISCHE GROESSEN VEREINBAREN BZW. ABBRUCH BEI UNZULAESSIGEM HOST
	405	# ODER WENN HOST NICHT ANGEGEBEN WURDE
	406	if [[ $remote_host = none ]]
	407	then
	408	printf "\n +++ host missing"
	409	locat=option; exit
	410	else
	411	case $remote_host in
[251]	412	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[312]	413	(ibmh) queue=no_class; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[693]	414	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
[622]	415	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
[251]	416	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	417	(ibmy) queue=parallel; remote_addres=165.132.26.58; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
	418	(lcfimm) remote_addres=172.20.4.2; submcom=/opt/torque/bin/qsub;;
[440]	419	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
[540]	420	(lcsgib) queue=smallq; remote_addres=130.73.232.104; submcom=/opt/moab/bin/msub;;
	421	(lcsgih) queue=smallq; remote_addres=130.75.4.101; submcom=/opt/moab/bin/msub;;
[367]	422	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
[1040]	423	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
[717]	424	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
[1021]	425	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
[635]	426	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
[892]	427	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
[437]	428	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
[693]	429	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
[251]	430	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
	431	(necriam) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=172.16.1.131; submcom="/usr/bin/nqsII/qsub";;
	432	(vpp) qsubmem=m; qsubtime=t; queue=vpp; remote_addres=130.75.4.130;;
	433	(unics) qsubmem=d; qsubtime=t; queue=unics; remote_addres=130.75.6.1;;
	434	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
	435	locat=parameter; exit;;
[1]	436	esac
	437	fi
	438
	439
	440	# EVTL. PRUEFEN, OB ANGEGEBENE QUEUE ZULAESSIG IST
	441	if [[ $no_default_queue != none ]]
	442	then
	443	error=false
	444	ndq=$no_default_queue
	445	case $remote_host in
	446	(ibm) case $ndq in
	447	(p690_express\|p690_standard\|p690_long) error=false;;
	448	(*) error=true;;
	449	esac;;
	450	(ibmh) case $ndq in
[312]	451	(no_class) error=false;;
[1]	452	(*) error=true;;
	453	esac;;
[693]	454	(ibmkisti) case $ndq in
	455	(class.32plus\|class.1-2\|class.2-32) error=false;;
	456	(*) error=true;;
	457	esac;;
[622]	458	(ibmku) case $ndq in
	459	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
	460	(*) error=true;;
	461	esac;;
[1]	462	(ibms) case $ndq in
	463	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
	464	(*) error=true;;
	465	esac;;
	466	(ibmy) case $ndq in
	467	(parallel) error=false;;
	468	(*) error=true;;
	469	esac;;
[1040]	470	(lckiaps) case $ndq in
	471	(express\|normal) error=false;;
	472	(*) error=true;;
	473	esac;;
[440]	474	(lckyoto) case $ndq in
	475	(eh\|ph) error=false;;
	476	(*) error=true;;
	477	esac;;
[191]	478	(lcsgib\|lcsgih) case $ndq in
[416]	479	(testq\|serialq\|smallq\|mediumq\|bigq\|workq\|dataq\|permq\|special1q) error=false;;
[191]	480	(*) error=true;;
	481	esac;;
[1]	482	(lctit) case $ndq in
[635]	483	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
[1]	484	(*) error=true;;
	485	esac;;
	486	(t3eb) case $ndq in
	487	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
	488	(*) error=true;;
	489	esac;;
[251]	490	(necriam) case $ndq in
[253]	491	(SP\|SS\|P6) error=false;;
[251]	492	(*) error=true;;
	493	esac;;
[1]	494	(t3eh) case $ndq in
	495	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
	496	(*) error=true;;
	497	esac;;
	498	(t3ej2\|t3ej5) case $ndq in
	499	(low\|normal\|high) error=false;;
	500	(*) error=true;;
	501	esac;;
	502	(t3es) case $ndq in
	503	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
	504	(*) error=true;;
	505	esac;;
	506	(unics) case $ndq in
	507	(unics\|ht) error=false;;
	508	(*) error=true;;
	509	esac;;
	510	esac
	511	if [[ $error = true ]]
	512	then
	513	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
	514	locat=parameter; exit
	515	else
	516	queue=$no_default_queue
	517	fi
	518	fi
	519
	520
	521
	522	# PRUEFEN DER CPU-ZEIT, ZEIT NACH STUNDEN, MINUTEN UND SEKUNDEN
	523	# AUFTEILEN
	524	done=false
	525	while [[ $done = false ]]
	526	do
	527	if (( $cputime <= 0 ))
	528	then
	529	printf "\n +++ wrong cpu-time or cpu-time missing"
	530	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
	531	printf "\n >>> "
	532	read cputime 1>/dev/null 2>&1
	533	else
	534	done=true
	535	fi
	536	done
	537	if [[ $remote_host = nech ]]
	538	then
	539	if (( tasks_per_node != 0 ))
	540	then
	541	(( cputime = cputime * tasks_per_node ))
	542	elif [[ $numprocs != 0 ]]
	543	then
	544	(( cputime = cputime * numprocs ))
	545	fi
	546	fi
	547	(( stunden = cputime / 3600 ))
	548	(( resttime = cputime - stunden * 3600 ))
	549	(( minuten = resttime / 60 ))
	550	(( sekunden = resttime - minuten * 60 ))
	551	timestring=${stunden}:${minuten}:${sekunden}
	552
	553
	554
	555	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	556	done=false
	557	while [[ $done = false ]]
	558	do
	559	if (( memory <= 0 ))
	560	then
	561	printf "\n +++ wrong memory demand or memory demand missing"
	562	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	563	printf "\n >>> "
	564	read memory 1>/dev/null 2>&1
	565	else
	566	done=true
	567	fi
	568	done
	569
[251]	570	if [[ $remote_host = nech \|\| $remote_host = necriam ]]
[1]	571	then
	572	if (( tasks_per_node != 0 ))
	573	then
	574	(( Memory = memory * tasks_per_node / 1000 ))
	575	elif [[ $numprocs != 0 ]]
	576	then
	577	(( Memory = memory * numprocs / 1000 ))
	578	else
	579	(( Memory = memory / 1000 ))
	580	fi
[635]	581	elif [[ $remote_host = lctit ]]
	582	then
	583	(( Memory = memory * tasks_per_node / 1000 ))
[1]	584	fi
	585
	586
	587	# SPEICHERBERECHNUNG BEI OPENMP-NUTZUNG
	588	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	589	then
	590	(( memory = memory * threads_per_task ))
	591	fi
	592
	593
	594	# BERECHNUNG DER ANZAHL DER ZU VERWENDENDEN KNOTEN
	595	if (( tasks_per_node != 0 ))
	596	then
[622]	597	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
[1]	598	fi
	599
[622]	600	# Calculate number of processes per node
	601	(( processes_per_node = tasks_per_node * threads_per_task ))
[1]	602
[696]	603	# Calculate number of MPI tasks
	604	(( mpi_tasks = numprocs / threads_per_task ))
[1]	605
[696]	606
[1]	607	# HEADER-AUSGABE
	608	if [[ $verify = true ]]
	609	then
	610	printf "\n\n"
	611	printf "#--------------------------------------------------------------# \n"
	612	spalte1=SUBJOB;spalte2=$(date)
	613	printf "\| $spalte1$spalte2 \| \n"
	614	printf "\| \| \n"
	615	printf "\| values of parameters/options: \| \n"
	616	spalte1=local_host$punkte; spalte2=$punkte$local_host
	617	printf "\| $spalte1$spalte2 \| \n"
	618	spalte1=remote_host$punkte; spalte2=$punkte$remote_host
	619	printf "\| $spalte1$spalte2 \| \n"
	620	spalte1=queue$punkte; spalte2=$punkte$queue
	621	printf "\| $spalte1$spalte2 \| \n"
	622	spalte1=memory$punkte; spalte2="$punkte$memory mb"
	623	printf "\| $spalte1$spalte2 \| \n"
	624	spalte1=cputime$punkte; spalte2="$punkte$cputime sec"
	625	printf "\| $spalte1$spalte2 \| \n"
	626	spalte1=job_name$punkte; spalte2="$punkte$job_name"
	627	printf "\| $spalte1$spalte2 \| \n"
	628	printf "#--------------------------------------------------------------# \n\n"
	629
	630
	631	# KONTROLLABFRAGE, OB ALLES O.K.
	632	antwort="dummy"
	633	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
	634	do
	635	read antwort?" >>> continue (y/n) ? "
	636	done
	637	if [[ $antwort = n \|\| $antwort = N ]]
	638	then
	639	locat=verify; exit
	640	fi
	641	printf "\n"
	642	fi
	643
	644
	645
	646	# ZUFALLSKENNUNG GENERIEREN UND JOBNAMEN AUF ZIELRECHNER BESTIMMEN
	647	kennung=$RANDOM
	648	job_on_remhost=${job_name}_${kennung}_$local_host
	649	job_to_send=job_to_send_$kennung
	650	if [[ $delete_dayfile = false ]]
	651	then
	652	remote_dayfile=${local_host}_${job_name}_result_$kennung
	653	local_dayfile=${remote_host}_${job_name}
	654	else
	655	remote_dayfile=/dev/null
	656	fi
	657
	658
	659
[622]	660	# Generate the batch job scripts (qsub/msub/LoadLeveler)
[1]	661	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
	662	then
	663
[622]	664	# General LoadLeveler settings
	665	execute_in_shell="#!/bin/ksh"
	666	use_shell="# @ shell = /bin/ksh"
	667	consumable_memory="ConsumableMemory($memory mb)"
	668	class="# @ class = $queue"
	669	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
	670	network_to_use="# @ network.mpi = sn_all,shared,us"
	671	data_limit="# @ data_limit = 1.76gb"
	672	image_size="# @ image_size = 50"
[693]	673	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
[312]	674
[693]	675	if [[ $email_notification = none ]]
	676	then
	677	notify_user=""
	678	else
	679	notify_user="# @ notify_user = $email_notification"
	680	if [[ $delete_dayfile = true ]]
	681	then
	682	notification='# @ notification = never'
	683	fi
	684	fi
[622]	685
[312]	686	if [[ $remote_host = ibmh ]]
[1]	687	then
[312]	688	data_limit=""
	689	network_to_use=""
	690	class=""
	691	environment=""
[814]	692	rset="# @ rset = RSET_MCM_AFFINITY"
	693	task_affinity="# @ task_affinity = core(1)"
[693]	694	elif [[ $remote_host = ibmkisti ]]
	695	then
	696	network_to_use="# @ network.MPI = sn_all,shared,US"
	697	wall_clock_limit="# @ wall_clock_limit = $timestring"
[696]	698	if [[ $threads_per_task = 1 ]]
	699	then
	700	rset="# @ rset = RSET_MCM_AFFINITY"
	701	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
	702	fi
[693]	703	environment=""
	704	use_shell=""
	705	data_limit=""
	706	image_size=""
[622]	707	elif [[ $remote_host = ibmku ]]
	708	then
	709	execute_in_shell="#!/usr/bin/ksh"
	710	use_shell="# @ shell = /usr/bin/ksh"
	711	consumable_memory=""
	712	environment=""
	713	network_to_use="# @ network.mpi = sn_all,shared,us"
	714	data_limit=""
	715	image_size=""
	716	elif [[ $remote_host = ibms ]]
	717	then
	718	network_to_use="# @ network.mpi = csss,shared,us"
	719	elif [[ $remote_host = ibmy ]]
	720	then
	721	consumable_memory=""
	722	network_to_use=""
[1]	723	fi
	724
	725	cat > $job_to_send << %%END%%
[622]	726	$execute_in_shell
	727	$use_shell
[1]	728
	729	# @ job_type = parallel
[693]	730	# @ job_name = $job_name
[1]	731	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
	732	# @ output = $remote_dayfile
	733	# @ error = $remote_dayfile
[693]	734	$wall_clock_limit
[622]	735	$image_size
[312]	736	$class
	737	$environment
[1]	738	$network_to_use
	739	$data_limit
[693]	740	$rset
	741	$mcm_affinity_options
[814]	742	$task_affinity
[1]	743	$notification
[693]	744	$notify_user
[1]	745
	746	%%END%%
	747
	748	if (( nodes > 0 ))
	749	then
	750
[693]	751	if [[ $remote_host != ibmkisti ]]
	752	then
	753
	754	cat >> $job_to_send << %%END%%
[1]	755	# @ node = $nodes
[622]	756	# @ tasks_per_node = $processes_per_node
[1]	757	# @ node_usage = $node_usage
	758	# @ queue
	759
	760	%%END%%
	761
[693]	762	else
	763
	764	cat >> $job_to_send << %%END%%
[696]	765	# @ total_tasks = $mpi_tasks
[693]	766	# @ blocking = unlimited
	767	# @ queue
	768
	769	%%END%%
	770
	771	fi
	772
[1]	773	else
	774
	775	if [[ $remote_host != ibmy ]]
	776	then
	777
	778	cat >> $job_to_send << %%END%%
	779	# @ blocking = unlimited
	780	# @ total_tasks = $numprocs
	781	# @ node_usage = $node_usage
	782	# @ queue
	783
	784	%%END%%
	785
	786	else
	787
	788	cat >> $job_to_send << %%END%%
	789	# @ node = 1
	790	# @ total_tasks = $numprocs
	791	# @ queue
	792
	793	%%END%%
	794
	795	fi
	796
	797	fi
	798
[696]	799	# workaround because of silly job filter on ibmkisti
	800	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
	801	then
	802	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
	803	fi
	804
[1]	805	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
	806	then
	807
	808	cat > $job_to_send << %%END%%
	809	#!/bin/ksh
	810
	811	# @ job_type = serial
	812	# @ node_usage = $node_usage
	813	# @ job_name = palm
	814	# @ wall_clock_limit = ${timestring},$timestring
	815	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
	816	# @ output = $remote_dayfile
	817	# @ error = $remote_dayfile
[312]	818	$class
[1]	819	$notification
	820
	821	# @ queue
	822
	823	%%END%%
	824
[108]	825	elif [[ $remote_host = lcfimm ]]
	826	then
	827
	828	if [[ $numprocs != 0 ]]
	829	then
	830	cat > $job_to_send << %%END%%
	831	#!/bin/ksh
	832	#PBS -N $job_name
[552]	833	#PBS -A $project_account
[108]	834	#PBS -l walltime=$timestring
[622]	835	#PBS -l nodes=${nodes}:ppn=$processes_per_node
[108]	836	#PBS -l pmem=${memory}mb
	837	#PBS -m abe
	838	#PBS -o $remote_dayfile
	839	#PBS -j oe
	840	mpd &
	841
	842	%%END%%
	843
[168]	844	else
	845	cat > $job_to_send << %%END%%
	846	#!/bin/ksh
	847	#PBS -N $job_name
[552]	848	#PBS -A $project_account
[168]	849	#PBS -l walltime=$timestring
	850	#PBS -l ncpus=1
	851	#PBS -l pmem=${memory}mb
	852	#PBS -m abe
	853	#PBS -o $remote_dayfile
	854	#PBS -j oe
	855
	856	%%END%%
	857
	858	fi
	859
[1021]	860	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
[368]	861	then
	862
	863	if [[ $numprocs != 0 ]]
	864	then
	865	cat > $job_to_send << %%END%%
	866	#!/bin/ksh
	867	#PBS -N $job_name
	868	#PBS -l walltime=$timestring
	869	#PBS -l ncpus=$numprocs
	870	#PBS -l pmem=${memory}mb
	871	#PBS -o $remote_dayfile
[1021]	872	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[368]	873	#PBS -j oe
	874
	875	mpd &
	876
	877	%%END%%
	878
	879	else
	880	cat > $job_to_send << %%END%%
	881	#!/bin/ksh
	882	#PBS -N $job_name
	883	#PBS -l walltime=$timestring
	884	#PBS -l ncpus=1
	885	#PBS -l pmem=${memory}mb
	886	#PBS -o $remote_dayfile
	887	#PBS -j oe
	888
	889	%%END%%
	890
	891	fi
	892
[1040]	893	elif [[ $remote_host = lckiaps ]]
	894	then
	895
	896	if [[ $numprocs != 0 ]]
	897	then
	898	cat > $job_to_send << %%END%%
	899	#!/bin/ksh
	900	#PBS -N $job_name
	901	#PBS -l walltime=$timestring
	902	#PBS -l select=1:ncpus=$numprocs
	903	#PBS -l pmem=${memory}mb
	904	#PBS -q $queue
	905	#PBS -o $remote_dayfile
	906	#PBS -j oe
	907	#PBS -V
	908
	909	%%END%%
	910
	911	else
	912	cat > $job_to_send << %%END%%
	913	#!/bin/ksh
	914	#PBS -N $job_name
	915	#PBS -l walltime=$timestring
	916	#PBS -l ncpus=1
	917	#PBS -l pmem=${memory}mb
	918	#PBS -o $remote_dayfile
	919	#PBS -j oe
	920
	921	%%END%%
	922
	923	fi
	924
[693]	925	elif [[ $remote_host = lcyon ]]
	926	then
	927
	928	if [[ $numprocs != 0 ]]
	929	then
	930	cat > $job_to_send << %%END%%
	931	#!/bin/ksh
	932	#PBS -N $job_name
	933	#PBS -l walltime=$timestring
	934	#PBS -l ncpus=$numprocs
	935	#PBS -l pmem=${memory}mb
	936	#PBS -o $remote_dayfile
	937	#PBS -j oe
	938
	939	%%END%%
	940
	941	else
	942	cat > $job_to_send << %%END%%
	943	#!/bin/ksh
	944	#PBS -N $job_name
	945	#PBS -l walltime=$timestring
	946	#PBS -l ncpus=1
	947	#PBS -l pmem=${memory}mb
	948	#PBS -o $remote_dayfile
	949	#PBS -j oe
	950
	951	%%END%%
	952
	953	fi
	954
[181]	955	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
[179]	956	then
	957
[376]	958	if [[ "$sgi_feature" != "" ]]
	959	then
	960	feature_directive="#PBS -l feature=$sgi_feature"
	961	else
	962	feature_directive=""
	963	fi
[799]	964
[416]	965	if [[ $queue = dataq \|\| $queue = permq ]]
[399]	966	then
	967	feature_directive="#PBS -l feature=data"
	968	fi
[376]	969
[789]	970	if [[ $queue = testq \|\| $queue = mediumq \|\| $queue = bigq \|\| $queue = workq \|\| $queue = dataq \|\| $queue = permq \|\| $queue = serialq \|\| $queue = special1q ]]
[191]	971	then
	972	queue_directive="#PBS -q $queue"
	973	else
	974	queue_directive=""
	975	fi
	976
[352]	977	if [[ $email_notification = none ]]
	978	then
	979	email_directive=""
	980	else
	981	email_directive="#PBS -M $email_notification"
	982	fi
	983
[179]	984	if [[ $numprocs != 0 ]]
	985	then
	986	cat > $job_to_send << %%END%%
[181]	987	#!/bin/bash
[179]	988	#PBS -N $job_name
	989	#PBS -l walltime=$timestring
[622]	990	#PBS -l nodes=$nodes:ppn=${processes_per_node}
[181]	991	#PBS -l naccesspolicy=$node_usage
[179]	992	#PBS -o $remote_dayfile
	993	#PBS -j oe
[376]	994	$feature_directive
[191]	995	$queue_directive
[352]	996	$email_directive
[179]	997
[622]	998	eval \`/sw/swdist/bin/modulesinit\`
	999	#. /usr/share/modules/init/bash
[892]	1000	$init_cmds
[493]	1001	$module_calls
[374]	1002
[181]	1003	echo ld_library_path=\$LD_LIBRARY_PATH
[179]	1004
	1005	%%END%%
	1006
	1007	else
	1008	cat > $job_to_send << %%END%%
	1009	#PBS -S /bin/bash
	1010	#PBS -N $job_name
	1011	#PBS -l walltime=$timestring
	1012	#PBS -l ncpus=1
	1013	#PBS -o $remote_dayfile
[475]	1014	#PBS -j oe
[400]	1015	$queue_directive
	1016	$email_directive
[179]	1017
[622]	1018	eval \`/sw/swdist/bin/modulesinit\`
	1019	#. /usr/share/modules/init/bash
[892]	1020	$init_cmds
[493]	1021	$module_calls
[475]	1022
[179]	1023	%%END%%
	1024
	1025	fi
	1026
[892]	1027	elif [[ $remote_host = lcxe6 ]]
[164]	1028	then
	1029
	1030	if [[ $numprocs != 0 ]]
	1031	then
	1032	cat > $job_to_send << %%END%%
[799]	1033	#!/bin/ksh
[164]	1034	#PBS -S /bin/ksh
	1035	#PBS -N $job_name
[552]	1036	#PBS -A $project_account
[206]	1037	#PBS -j oe
[164]	1038	#PBS -l walltime=$timestring
	1039	#PBS -l mppwidth=${numprocs}
[622]	1040	#PBS -l mppnppn=${processes_per_node}
[164]	1041	#PBS -m abe
	1042	#PBS -o $remote_dayfile
[492]	1043	$email_directive
[164]	1044
[892]	1045	$init_cmds
[493]	1046	$module_calls
[343]	1047
[164]	1048	%%END%%
	1049
[108]	1050	else
	1051	cat > $job_to_send << %%END%%
	1052	#!/bin/ksh
[168]	1053	#PBS -S /bin/ksh
[108]	1054	#PBS -N $job_name
[552]	1055	#PBS -A $project_account
[206]	1056	#PBS -j oe
[108]	1057	#PBS -l walltime=$timestring
	1058	#PBS -l ncpus=1
	1059	#PBS -l pmem=${memory}mb
	1060	#PBS -m abe
[492]	1061	$email_directive
[108]	1062	#PBS -o $remote_dayfile
	1063
[892]	1064	$init_cmds
[493]	1065	$module_calls
[343]	1066
[108]	1067	%%END%%
	1068
	1069	fi
	1070
[440]	1071	elif [[ $remote_host = lckyoto ]]
[437]	1072	then
	1073
[440]	1074	cat > $job_to_send << %%END%%
[799]	1075	#!/bin/ksh
[440]	1076	# @\$-o $remote_dayfile
	1077	# @\$-eo -oi
	1078	# @\$-lP 16
[799]	1079	# @\$-lp 1
[440]	1080	# @\$-lm 28gb -llm unlimited -ls unlimited
	1081	# @\$-q $queue
	1082	# @\$-Pvn abs_pack
	1083	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
	1084	#. /thin/local/etc/setprofile/intel-11.0.sh
	1085	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
	1086	. ~/.myprofile
	1087	#. /home2/t/t51254/palm/current_version/myprofile
	1088	#. /thin/apps/pgi/mpi.sh
	1089	#
	1090	env
	1091	#
	1092	set -x
	1093
	1094	%%END%%
	1095
	1096	elif [[ $remote_host = lcxt5m ]]
	1097	then
	1098
[437]	1099	if [[ $numprocs != 0 ]]
	1100	then
	1101	cat > $job_to_send << %%END%%
[799]	1102	#!/bin/ksh
[437]	1103	#PBS -S /bin/ksh
	1104	#PBS -N $job_name
	1105	#PBS -j oe
	1106	#PBS -l walltime=$timestring
	1107	#PBS -l mppwidth=${numprocs}
[622]	1108	#PBS -l mppnppn=${processes_per_node}
[437]	1109	#PBS -m abe
	1110	#PBS -o $remote_dayfile
	1111
[892]	1112	$init_cmds
[493]	1113	$module_calls
[437]	1114
	1115	%%END%%
	1116
	1117	else
	1118	cat > $job_to_send << %%END%%
	1119	#!/bin/ksh
	1120	#PBS -S /bin/ksh
	1121	#PBS -N $job_name
	1122	#PBS -j oe
	1123	#PBS -l walltime=$timestring
	1124	#PBS -l ncpus=1
	1125	#PBS -l pmem=${memory}mb
	1126	#PBS -m abe
	1127	#PBS -o $remote_dayfile
	1128
[892]	1129	$init_cmds
[493]	1130	$module_calls
[437]	1131
	1132	%%END%%
	1133
	1134	fi
	1135
[1]	1136	elif [[ $remote_host = nech ]]
	1137	then
	1138
	1139	if (( nodes > 1 ))
	1140	then
	1141	cat > $job_to_send << %%END%%
	1142	#!/bin/ksh
[622]	1143	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1144	#PBS -l ${qsubmem}=${Memory}gb
	1145	#PBS -b $nodes
	1146	#PBS -o $remote_dayfile
	1147	#PBS -N palm
	1148	#PBS -j o
	1149	#PBS -T mpisx
	1150
	1151	%%END%%
	1152
	1153	elif [[ $numprocs != 0 ]]
	1154	then
	1155	cat > $job_to_send << %%END%%
	1156	#!/bin/ksh
[622]	1157	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
[1]	1158	#PBS -l ${qsubmem}=${Memory}gb
	1159	#PBS -o $remote_dayfile
	1160	#PBS -N palm
	1161	#PBS -j o
	1162
	1163	%%END%%
	1164
	1165	else
	1166	cat > $job_to_send << %%END%%
	1167	#!/bin/ksh
	1168	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
	1169	#PBS -o $remote_dayfile
	1170	#PBS -j o
	1171
	1172	%%END%%
	1173
	1174	fi
	1175
[251]	1176	elif [[ $remote_host = necriam ]]
[35]	1177	then
	1178
	1179	if (( nodes > 1 ))
	1180	then
	1181	cat > $job_to_send << %%END%%
	1182	#!/bin/ksh
	1183	#PBS -b $nodes
	1184	#PBS -o $remote_dayfile
[253]	1185	#PBS -N $job_name
[35]	1186	#PBS -j o
[251]	1187	#PBS -v MPIPROGINV=YES
[35]	1188
	1189	%%END%%
	1190
	1191	elif [[ $numprocs != 0 ]]
	1192	then
	1193	cat > $job_to_send << %%END%%
	1194	#!/bin/ksh
	1195	#PBS -q ${queue}
	1196	#PBS -o $remote_dayfile
[253]	1197	#PBS -N $job_name
[35]	1198	#PBS -j o
[251]	1199	#PBS -v MPIPROGINV=YES
[35]	1200
	1201	%%END%%
	1202
	1203	else
	1204	cat > $job_to_send << %%END%%
	1205	#!/bin/ksh
	1206	#PBS -o $remote_dayfile
	1207	#PBS -j o
	1208
	1209	%%END%%
	1210
	1211	fi
	1212
[1]	1213	elif [[ $remote_host = lctit ]]
	1214	then
	1215	cat > $job_to_send << %%END%%
[635]	1216	#!/bin/ksh
[892]	1217	$init_cmds
[678]	1218	$module_calls
	1219
[1]	1220	%%END%%
	1221
	1222	# OPTIONEN FUER SUBMIT-KOMMANDO ZUSAMMENSTELLEN
[678]	1223	if [[ $tasks_per_node != $processes_per_node ]]
	1224	then
	1225	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
	1226	else
	1227	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
	1228	fi
[1]	1229
	1230	else
	1231
	1232	cat > $job_to_send << %%END%%
	1233	# @\$-q ${queue}
	1234	# @\$-l${qsubtime} $timestring
	1235	# @\$-l${qsubmem} ${memory}mb
	1236	# @\$-o $remote_dayfile
	1237	# @\$-eo
	1238
	1239	%%END%%
	1240
	1241	fi
	1242
	1243
	1244	# BEI RECHNUNG AUF REMOTE-MASCHINEN RUECKTRANSFER DES DAYFILES PER TRAP
	1245	# BEI EXIT VERANLASSEN
	1246	# VEKTORRECHNER MUSS EIGENEN JOB STARTEN, DA DORT NOHUP NICHT FUNKTIONIERT
	1247	# AUF IBM IN SEOUL IST RUECKTRANSFER ZUR ZEIT GENERELL NICHT MOEGLICH
	1248	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
	1249	then
	1250	echo "set +vx" >> $job_to_send
	1251	echo "trap '" >> $job_to_send
	1252	echo "set +vx" >> $job_to_send
[1040]	1253	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $(echo $remote_host \| cut -c1-5) = lcsgi \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lckiaps ]]
[1]	1254	then
[622]	1255	if [[ $remote_host = ibmh ]]
[1]	1256	then
	1257	return_queue=c1
[693]	1258	elif [[ $remote_host = ibmkisti ]]
	1259	then
	1260	return_queue=class.1-2
[622]	1261	elif [[ $remote_host = ibmku ]]
	1262	then
	1263	return_queue=sdbg2
[1]	1264	elif [[ $remote_host = ibms ]]
	1265	then
	1266	return_queue=p_normal
	1267	elif [[ $remote_host = ibmy ]]
	1268	then
	1269	return_queue=serial
[325]	1270	elif [[ $remote_host = lcsgih \|\| $remote_host = lcsgib ]]
	1271	then
[326]	1272	return_queue=serialq
[251]	1273	elif [[ $remote_host = necriam ]]
[1]	1274	then
[253]	1275	return_queue=SP
[1040]	1276	elif [[ $remote_host = lckiaps ]]
	1277	then
	1278	return_queue=express
[1]	1279	else
	1280	return_queue=unknown
	1281	fi
	1282
	1283	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1284	then
	1285
[622]	1286	if [[ $remote_host = ibmku ]]
	1287	then
	1288	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1289	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1290	else
	1291	echo "echo \"#!/bin/ksh\" >> scpjob.$kennung" >> $job_to_send
	1292	fi
[1]	1293	echo "echo \"# @ job_type = serial\" >> scpjob.$kennung" >> $job_to_send
	1294	echo "echo \"# @ job_name = transfer\" >> scpjob.$kennung" >> $job_to_send
	1295	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$kennung" >> $job_to_send
	1296	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$kennung " >> $job_to_send
	1297	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
	1298	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$kennung" >> $job_to_send
[312]	1299	if [[ $host != "ibmh" ]]
	1300	then
	1301	echo "echo \"# @ class = $return_queue\" >> scpjob.$kennung" >> $job_to_send
	1302	fi
[1]	1303	echo "echo \"# @ image_size = 10\" >> scpjob.$kennung" >> $job_to_send
	1304	echo "echo \"# @ notification = never\" >> scpjob.$kennung" >> $job_to_send
	1305
	1306	echo "echo \"# @ queue\" >> scpjob.$kennung" >> $job_to_send
	1307	echo "echo \" \" >> scpjob.$kennung" >> $job_to_send
	1308
	1309	echo "echo \"set -x\" >> scpjob.$kennung" >> $job_to_send
	1310	echo "echo \"batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$kennung" >> $job_to_send
[622]	1311	if [[ $remote_host = ibmku ]]
	1312	then
	1313	echo "echo \"rm scpjob.$kennung\" >> scpjob.$kennung" >> $job_to_send
	1314	fi
[1]	1315	echo "echo \"exit\" >> scpjob.$kennung" >> $job_to_send
	1316
	1317	elif [[ $remote_host = nech ]]
	1318	then
	1319	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1320	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1321	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
	1322	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1323	echo "#PBS -j o" >> $job_to_send
	1324	echo " " >> $job_to_send
	1325	echo "set -x" >> $job_to_send
	1326	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
	1327	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1328	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1329	echo "%%END%%" >> $job_to_send
	1330
[251]	1331	elif [[ $remote_host = necriam ]]
[35]	1332	then
	1333	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1334	echo "#PBS -q $return_queue" >> $job_to_send
	1335	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
	1336	echo "#PBS -j o" >> $job_to_send
	1337	echo " " >> $job_to_send
	1338	echo "set -x" >> $job_to_send
	1339	echo "batch_scp -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1340	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1341	echo "%%END%%" >> $job_to_send
	1342
[181]	1343	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1344	then
	1345	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1346	echo "#!/bin/bash" >> $job_to_send
	1347	echo "#PBS -N job_protocol_transfer" >> $job_to_send
[325]	1348	echo "#PBS -l walltime=00:30:00" >> $job_to_send
[181]	1349	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
[366]	1350	echo "#PBS -l feature=data" >> $job_to_send
[181]	1351	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1352	echo "#PBS -j oe" >> $job_to_send
	1353	echo " " >> $job_to_send
	1354	echo ". /usr/share/modules/init/bash" >> $job_to_send
	1355	echo "set -x" >> $job_to_send
	1356	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1357	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1358	echo "%%END%%" >> $job_to_send
	1359
[1]	1360	else
	1361
	1362	echo "cat > scpjob.$kennung << %%END%%" >> $job_to_send
	1363	echo "# @\\\$-q $return_queue" >> $job_to_send
	1364	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
	1365	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
	1366	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
	1367	then
	1368	echo "# @\$-l mpp_p=0" >> $job_to_send
	1369	fi
	1370	echo '# @\$-lF 10mb' >> $job_to_send
	1371	# echo '# @\$-o /dev/null' >> $job_to_send
	1372	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
	1373	echo '# @\\\$-eo' >> $job_to_send
	1374	echo " " >> $job_to_send
	1375	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1376	then
	1377	echo "set +vx" >> $job_to_send
	1378	echo ". .profile" >> $job_to_send
	1379	fi
	1380	echo "set -x" >> $job_to_send
	1381	echo "batch_scp -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
	1382	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
	1383	echo "%%END%%" >> $job_to_send
	1384	fi
	1385
	1386	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
	1387	then
	1388	echo "llsubmit scpjob.$kennung" >> $job_to_send
[181]	1389	elif [[ $(echo $remote_host \| cut -c1-5) = lcsgi ]]
	1390	then
[748]	1391	echo "rm -rf \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
	1392	echo "chmod u+x scpjob.$kennung" >> $job_to_send
	1393	echo "msub scpjob.$kennung" >> $job_to_send
[1]	1394	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
	1395	then
	1396	echo "qsub -J n scpjob.$kennung" >> $job_to_send
	1397	elif [[ $remote_host = t3es ]]
	1398	then
	1399	echo "qsub -J n -s /bin/ksh scpjob.$kennung" >> $job_to_send
[1043]	1400	elif [[ $remote_host = lckiaps ]]
	1401	then
	1402	echo "mv scpjob.$kennung $job_catalog" >> $job_to_send
	1403	echo "ssh ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$kennung\" " >> $job_to_send
	1404	echo "rm ${job_catalog}/scpjob.$kennung" >> $job_to_send
[1]	1405	else
[1040]	1406	echo "$submcom scpjob.$kennung" >> $job_to_send
[1]	1407	fi
[1043]	1408	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
[622]	1409	then
	1410	echo "rm scpjob.$kennung" >> $job_to_send
	1411	fi
[1]	1412	if [[ $remote_host = nech ]]
	1413	then
	1414	echo "cd -" >> $job_to_send
	1415	fi
	1416	else
	1417	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
	1418	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
	1419	fi
	1420	echo "set -x" >> $job_to_send
	1421	echo " ' exit" >> $job_to_send
	1422	echo "set -x" >> $job_to_send
	1423	fi
	1424
	1425
	1426
	1427	# EIGENTLICHE JOB-DATEI AN QSUB-KOMMANDOS ANHAENGEN
	1428	cat $file_to_send >> $job_to_send
[69]	1429
[1]	1430	if [[ $remote_host = ibm ]]
	1431	then
	1432	echo " " >> $job_to_send
	1433	echo "exit" >> $job_to_send
	1434	fi
[635]	1435
	1436	# remove job file
[622]	1437	if [[ $remote_host = lctit \|\| $remote_host = ibmku ]]
[69]	1438	then
	1439	echo " " >> $job_to_send
	1440	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
	1441	fi
[1]	1442
	1443
	1444
	1445	# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
	1446	if [[ -z $remote_user ]]
	1447	then
	1448	if [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es \|\| $remote_host = vpp ]]
	1449	then
	1450	grep $remote_addres ~/.netrc \| read dum dum dum remote_user dum dum
	1451	fi
	1452	fi
	1453
	1454
	1455
	1456	# JOB AUF ZIELRECHNER TRANSFERIEREN BZW. INS JOBVERZEICHNIS KOPIEREN
	1457	if [[ $no_submit = false ]]
	1458	then
	1459	if [[ $remote_host != $local_host ]]
	1460	then
	1461	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
[82]	1462	if [[ $remote_host = ibms \|\| $remote_host = ibmy ]] # ssh on ibms cannot handle "~/"
[1]	1463	then
[82]	1464	job_catalog_save=$job_catalog
	1465	job_catalog=job_queue
	1466	elif [[ $remote_host = nech ]]
	1467	then
	1468	job_catalog_save=$job_catalog
	1469	job_catalog=/hpf/b/${remote_user}/job_queue
	1470	fi
	1471	if [[ $local_host = decalpha ]]
	1472	then
	1473	# VERWENDUNG VON SCP AUF DECALPHA FRAGT FEHLERHAFTERWEISE
	1474	# PASSWORT AB
	1475	/bin/scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
	1476	elif [[ $remote_host = nech ]]
	1477	then
	1478	# DATEIEN KOENNEN NUR UEBER DEN ARCHIVE-SERVER DES DKRZ
	1479	# TRANSFERIERT WERDEN
	1480	scp $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
[1]	1481	else
[82]	1482	scp $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
[1]	1483	fi
[82]	1484	if [[ $? = 1 ]]
	1485	then
	1486	locat=scp; exit
	1487	fi
	1488	if [[ $remote_host = ibms ]]
	1489	then
	1490	job_catalog=$job_catalog_save
	1491	fi
[1]	1492	[[ $verify = true ]] && printf "\n >>> finished\n"
	1493	else
	1494	eval job_catalog=$job_catalog
	1495	cp $job_to_send ${job_catalog}/$job_on_remhost
	1496	fi
	1497
	1498
	1499
	1500	# NQS- BZW. LOADLEVELER-JOB STARTEN
	1501	if [[ $remote_host != $local_host ]]
	1502	then
	1503	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
[635]	1504
	1505	if [[ $(echo $remote_host \| cut -c1-5) = lcsgi && $prio = true ]]
[1]	1506	then
[635]	1507	printf "\n >>> submit with HLRN qos-feature hiprio...\n"
	1508	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom -l qos=hiprio $job_on_remhost; rm $job_on_remhost"
	1509	elif [[ $remote_host = ibmku ]]
	1510	then
	1511	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
[1]	1512	else
[635]	1513	ssh $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
[82]	1514	fi
[1]	1515
	1516	[[ $verify = true ]] && printf " >>> o.k.\n"
	1517	else
	1518	cd $job_catalog
[210]	1519	if [[ $(echo $local_host \| cut -c1-5) = lcsgi \|\| $(echo $local_host \| cut -c1-3) = ibm ]]
[1]	1520	then
	1521	eval $submcom $job_on_remhost
[1021]	1522	elif [[ $local_host = lcfimm \|\| $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb ]]
[108]	1523	then
[635]	1524	chmod u+x $job_on_remhost
	1525	echo "$submcom $job_on_remhost"
[108]	1526	eval $submcom $job_on_remhost
[1]	1527	elif [[ $local_host = nech ]]
	1528	then
	1529	if [[ $queue = default ]]
	1530	then
[799]	1531	eval $submcom $job_on_remhost
[1]	1532	else
[799]	1533	eval $submcom -q $queue $job_on_remhost
[1]	1534	fi
	1535	else
	1536	qsub $job_on_remhost
	1537	fi
[622]	1538
	1539	# Jobfile must not be deleted on lctit/ibmku!! This will be done
	1540	# only at the end of the job.
	1541	if [[ $local_host != lctit && $local_host != ibmku ]]
	1542	then
	1543	rm $job_on_remhost
	1544	fi
[1]	1545	cd - > /dev/null
	1546	fi
	1547	fi
	1548
	1549
	1550
	1551	# ABSCHLUSSARBEITEN
	1552
	1553	if [[ $no_submit = false ]]
	1554	then
	1555	rm $job_to_send
	1556	fi
	1557	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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