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source: palm/trunk/SCRIPTS/palmtest @ 3354

Last change on this file since 3354 was 3354, checked in by knoop, 6 years ago
Improvements to palmtest and reduction of netcdf file check precission for profiles
Property svn:executable set to ``* Property svn:keywords set to `Id`
File size: 56.4 KB

Rev	Line
[3353]	1	#!/usr/bin/env python3
	2	# PYTHON_ARGCOMPLETE_OK
[2497]	3
[3353]	4	import os
	5	import sys
	6	import shutil
	7	from datetime import datetime
	8	import subprocess
	9	import multiprocessing
	10	import socket
	11	import getpass
	12	import math
	13	import re
	14	import threading
	15	import queue
	16	from contextlib import ContextDecorator
[2497]	17
[3353]	18	try:
	19	from argparse import ArgumentParser
	20	from argparse import RawTextHelpFormatter
	21	except ImportError:
	22	sys.exit(
	23	'ERROR: You need argparse!\n' +
	24	' install it from http://pypi.python.org/pypi/argparse\n' +
	25	' or run \"pip install argparse\".'
	26	)
[2497]	27
[3353]	28	try:
	29	import numpy as np
	30	except ImportError:
	31	sys.exit(
	32	'ERROR: You need numpy!\n' +
	33	' install it from http://pypi.python.org/pypi/numpy\n' +
	34	' or run \"python3 -m pip install numpy\".'
	35	)
[2497]	36
[3353]	37	try:
	38	import netCDF4
	39	except ImportError:
	40	sys.exit(
	41	'ERROR: You need netCDF4!\n' +
	42	' install it from http://pypi.python.org/pypi/netCDF4\n' +
	43	' or run \"python3 -m pip install netCDF4\".'
	44	)
[2497]	45
[3353]	46	try:
	47	import yaml
	48	except ImportError:
	49	sys.exit(
	50	'ERROR: You need PyYAML!\n' +
	51	' install it from http://pypi.python.org/pypi/PyYAML\n' +
	52	' or run \"python3 -m pip install PyYAML\".'
	53	)
[2497]	54
[3353]	55	try:
	56	import argcomplete
	57	except ImportError:
	58	print(
	59	'INFO: To use Tab-completion you need argcomplete!\n' +
	60	' install it from http://pypi.python.org/pypi/argcomplete\n' +
	61	' or run \"python3 -m pip install argcomplete\".'
	62	)
	63	has_argcomplete = False
	64	else:
	65	has_argcomplete = True
[2497]	66
[3353]	67	try:
[3354]	68	from termcolor import colored as tcolored
[3353]	69	except ImportError:
[3354]	70	def tcolored(string, color):
[3353]	71	return string
[2497]	72
[3354]	73	disable_colored_output = False
[2497]	74
	75
[3354]	76	def colored(string, color):
	77	if not disable_colored_output:
	78	return tcolored(string, color)
	79	else:
	80	return string
	81
	82
	83	version = '1.0.1'
	84
[3353]	85	scripts_dir = os.path.dirname(os.path.realpath(__file__))
	86	trunk_dir = os.path.realpath(os.path.join(scripts_dir, '..'))
	87	workspace_dir = os.path.realpath(os.path.join(trunk_dir, '..'))
[2497]	88
[3353]	89	trunk_tests_dir = os.path.join(trunk_dir, 'TESTS')
	90	trunk_tests_cases_dir = os.path.join(trunk_tests_dir, 'cases')
	91	trunk_tests_builds_dir = os.path.join(trunk_tests_dir, 'builds')
[2497]	92
[3353]	93	tests_dir = os.path.join(workspace_dir, 'tests')
[2497]	94
[3353]	95	available_cores = multiprocessing.cpu_count()
	96	terminal_columns, terminal_lines = shutil.get_terminal_size()
	97	hline = '#' * min(terminal_columns, 300) + '\n'
	98	table_width_intro = 12
[3354]	99	table_width_builds = len(max([s for s in next(os.walk(trunk_tests_builds_dir))[1] if not s[0] == '.'], key=len)) + len('_debug')
	100	table_width_cases = len(max([s for s in next(os.walk(trunk_tests_cases_dir))[1] if not s[0] == '.'], key=len))
[3353]	101	table_width_cores = 7
	102	table_width_total = table_width_intro + table_width_builds + table_width_cases + table_width_cores + 3
[2497]	103
[3353]	104	task_table_line_template = \
	105	'{:' + str(table_width_intro) + '} ' + \
	106	'{:' + str(table_width_cases) + '} ' + \
	107	'{:' + str(table_width_builds) + '} ' + \
	108	'{:' + str(table_width_cores) + '} '
[2579]	109
[3353]	110	config_table_line_template = \
	111	'{:' + str(table_width_intro) + '} ' + \
	112	'{:' + str(max(table_width_builds, table_width_cases)) + '} ' + \
	113	'{:8} '
[2579]	114
[3353]	115	file_table_line_template = \
	116	'{:' + str(table_width_intro) + '} ' + \
	117	'{:' + str(table_width_cases + 13) + '} '
	118
	119	# for debugging
	120	exist_ok = False
	121
	122
	123	class SignificantDigitsRounder:
	124
	125	@staticmethod
	126	def _round(value, digits=10):
	127	if value == 0.0:
	128	return value
	129	negative = value < 0.0
	130	value = -value if negative else value
	131	rounded_value = round(value, -int(math.floor(math.log10(value))) + (digits - 1))
	132	rounded_value = -rounded_value if negative else rounded_value
	133	return rounded_value
	134
	135
	136	vectorized_round = np.vectorize(_round)
	137
	138	_vectorized_round = np.vectorize(round)
	139
	140
	141	@classmethod
	142	def around(cls, array, digits=10):
	143	# TODO: divide both arrays and check decimal point
	144	sign_mask = np.ma.masked_where(array >= 0.0, array).mask
	145	pos_array = np.where(sign_mask, array, -array)
	146	non_zero_maks = np.ma.masked_where(pos_array == 0.0, pos_array).mask
	147	non_zero_array = np.where(non_zero_maks, 1.0, pos_array)
	148	i1 = -np.floor(np.log10(non_zero_array)).astype(int) + (digits - 1)
	149	rounded_non_zero_array = cls._vectorized_round(non_zero_array, i1)
	150	rounded_pos_array = np.where(non_zero_maks, 0.0, rounded_non_zero_array)
	151	return np.where(sign_mask, rounded_pos_array, -rounded_pos_array)
	152
	153
	154
	155	class Logger(ContextDecorator):
	156
	157	def __init__(self, logfile_dir, logfile_name='palmtest.log', logfile_mode='a', verbose=False):
	158	self.logfile_path = os.path.join(logfile_dir, logfile_name)
	159	self.logfile_mode = logfile_mode
	160	self.verbose = verbose
	161
	162	def __enter__(self):
	163	self._file = open(self.logfile_path, self.logfile_mode)
	164	return self
	165
	166	def to_file(self, message):
	167	self._file.write(message)
	168	self._file.flush()
	169
	170	def to_log(self, message):
	171	if self.verbose:
	172	sys.stdout.write(message)
	173	sys.stdout.flush()
	174	self._file.write(message)
	175	self._file.flush()
	176
	177	def to_all(self, message):
	178	sys.stdout.write(message)
	179	sys.stdout.flush()
	180	self._file.write(message)
	181	self._file.flush()
	182
	183	def __exit__(self, *exc):
	184	self._file.close()
	185	return False
	186
	187
	188	class Executor:
	189
	190	@staticmethod
	191	def _enqueue_output(out, queue):
	192	for line in iter(out.readline, b''):
	193	queue.put(line)
	194	out.close()
	195
	196	@staticmethod
	197	def execute(cmd, cwd='.', verbose=True, dry_run=False):
	198	assert isinstance(cmd, list)
	199	if dry_run:
	200	cmd = ['echo'] + cmd
	201	cmd_str = ' '.join(cmd)
	202	p = subprocess.Popen(cmd_str, cwd=cwd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, shell=True, bufsize=1)
	203	q = queue.Queue()
	204	t = threading.Thread(target=Executor._enqueue_output, args=(p.stdout, q))
	205	t.daemon = True # thread dies with the program
	206	t.start()
	207
	208	with Logger(cwd, verbose=verbose) as logger:
	209	# read line without blocking
	210	logger.to_log(hline)
	211	logger.to_log('CMD: ' + cmd_str + '\n')
	212	logger.to_log(hline)
	213	while t.is_alive():
	214	try:
	215	line = q.get_nowait() # or q.get(timeout=.1)
	216	except queue.Empty:
	217	pass # print('no output yet')
	218	else: # got line
	219	logger.to_log(line.decode("utf-8"))
	220	line = True
	221	while line:
	222	try:
	223	line = q.get_nowait() # or q.get(timeout=.1)
	224	except queue.Empty:
	225	line = False
	226	else: # got line
	227	logger.to_log(line.decode("utf-8"))
	228	logger.to_log(hline)
	229
	230	rc = p.poll()
	231	failed = rc != 0
	232	return failed
	233
	234
	235	class NetCDFInterface:
	236
	237	def __init__(self, filename):
	238	self.filename = filename
	239
	240	def is_healthy(self):
	241	try:
	242	self.get_run_name()
	243	except:
	244	return False
	245	else:
	246	return True
	247
	248	def get_run_name(self):
	249	with netCDF4.Dataset(self.filename, mode='r') as netcdf:
	250	l = getattr(netcdf, 'title').split()
	251	i = l.index('run:')
	252	return l[i+1]
	253
	254	def get_var_list(self):
	255	with netCDF4.Dataset(self.filename, mode='r') as netcdf:
	256	var_list = getattr(netcdf, 'VAR_LIST').split(';')
	257	var_list = filter(None, var_list)
	258	return sorted(var_list)
	259
	260	def show_content(self):
	261	with netCDF4.Dataset(self.filename, mode='r') as netcdf:
	262	for name in netcdf.ncattrs():
	263	print("Global attr", name, "=", getattr(netcdf, name))
	264	print(netcdf)
	265	for v in netcdf.variables:
	266	print(v)
	267
	268	def get_times_list(self):
	269	attributes, times = self.read_var('time')
	270	times = [str(time) for time in times]
	271	times = list(filter(None, times))
	272	return times
	273
	274	def contains(self, variable):
	275	return variable in self.get_var_list()
	276
	277	def read_var(self, variable):
	278	with netCDF4.Dataset(self.filename, mode='r') as netcdf:
	279	values = netcdf.variables[variable][:] # extract values
	280	attributes = dict(
	281	long_name=netcdf.variables[variable].name,
	282	unit=netcdf.variables[variable].units,
	283	)
	284	return attributes, values
	285
	286
	287	class FileComparator:
	288
	289	@staticmethod
	290	def compare_ascii(file_path1, file_path2, start_string=None):
	291	try:
	292	with open(file_path1, 'r') as file1:
	293	content1 = file1.readlines()
	294	except OSError:
	295	return True, colored('[reference file not found]', 'red')
	296	try:
	297	with open(file_path2, 'r') as file2:
	298	content2 = file2.readlines()
	299	except OSError:
	300	return True, colored('[output file not found]', 'red')
	301	if start_string:
	302	index1 = content1.index(start_string)
	303	index2 = content2.index(start_string)
	304	comparable_content1 = content1[index1:]
	305	comparable_content2 = content2[index2:]
	306	ln = index2 + 1
	307	else:
	308	comparable_content1 = content1
	309	comparable_content2 = content2
	310	ln = 1
	311	if len(comparable_content1) != len(comparable_content2):
	312	return True, colored('[mismatch in total number of lines]', 'red')
	313	for line1, line2 in zip(comparable_content1, comparable_content2):
	314	if not line1 == line2:
	315	return True, colored('[mismatch in content starting line ' + str(ln) + ']', 'red')
	316	ln += 1
	317	return False, colored('[file ok]', 'green')
	318
	319	@staticmethod
	320	def compare_netcdf(file_path1, file_path2, digits=None):
	321	nci1 = NetCDFInterface(file_path1)
	322	nci2 = NetCDFInterface(file_path2)
	323	if not nci1.is_healthy():
	324	return True, colored('[reference file not found]', 'red')
	325	if not nci2.is_healthy():
	326	return True, colored('[output file not found]', 'red')
	327	times_list1 = nci1.get_times_list()
	328	times_list2 = nci2.get_times_list()
	329	if not times_list1 == times_list2:
	330	return True, colored('[wrong time dimension]', 'red')
	331	else:
	332	time_list = times_list1
	333	var_list1 = nci1.get_var_list()
	334	var_list2 = nci2.get_var_list()
	335	if not var_list1 == var_list2:
	336	return True, colored('[wrong set of variables]', 'red')
	337	else:
	338	var_list = var_list1
	339	content1 = dict()
	340	content2 = dict()
	341	for var in var_list:
	342	attributes1, values1 = nci1.read_var(var)
	343	attributes2, values2 = nci2.read_var(var)
	344	if sorted(attributes1.keys()) != sorted(attributes2.keys()):
	345	return True, colored('[wrong set of attributes in variable \"'+var+'\"]', 'red')
	346	if isinstance(digits, int):
	347	values1 = SignificantDigitsRounder.around(values1, digits=digits)
	348	values2 = SignificantDigitsRounder.around(values2, digits=digits)
	349	content1[var] = values1
	350	content2[var] = values2
	351	#for decimals in
	352	for i, time in enumerate(time_list):
	353	for var in var_list:
	354	t_content1 = content1[var][i]
	355	t_content2 = content2[var][i]
	356	if not (t_content1==t_content2).all():
	357	if isinstance(digits, int):
	358	return True, colored('[1st mismatch within ' + str(digits) + ' digits at time index ' + str(i) + ' in variable \"' + var + '\"]', 'red')
	359	else:
	360	return True, colored('[1st mismatch at time index ' + str(i) + ' in variable \"' + var + '\"]', 'red')
	361	return False, colored('[file ok]', 'green')
	362
	363
	364	class OutputChecker:
	365
	366	def __init__(self, test_dir, setup_name, build_name, cores, significant_digits=None, verbose=True, dry_run=False):
	367	self.test_dir = test_dir
	368	self.setup_name = setup_name
	369	self.build_name = build_name
	370	self.cores = cores
	371	self.significant_digits = significant_digits
	372	self.verbose = verbose
	373	self.dry_run = dry_run
	374	self.job_name = self.setup_name + '__' + build_name + '__' + str(self.cores)
	375	self.job_dir = os.path.join(self.test_dir, 'JOBS', self.job_name)
	376	self.ref_monitoring_dir = os.path.join(trunk_tests_cases_dir, self.setup_name, 'MONITORING')
	377	self.ref_output_dir = os.path.join(trunk_tests_cases_dir, self.setup_name, 'OUTPUT')
	378	self.res_monitoring_dir = os.path.join(self.job_dir, 'MONITORING')
	379	self.res_output_dir = os.path.join(self.job_dir, 'OUTPUT')
	380	self.failed = None
	381
	382	def get_checkable_file_dicts(self):
	383	if os.path.isdir(self.ref_monitoring_dir):
	384	file_names_monitoring = [s for s in next(os.walk(self.ref_monitoring_dir))[2]]
	385	else:
	386	file_names_monitoring = []
	387	file_paths_monitoring = []
	388	for file_name in file_names_monitoring:
	389	file_specific_ending = file_name[len(self.setup_name):]
	390	file_specific_ending_split = file_specific_ending.split('.')
	391	postfix = file_specific_ending_split[0]
	392	if len(file_specific_ending_split) > 1:
	393	extension = file_specific_ending_split[-1]
	394	else:
	395	extension = ''
	396	if len(file_specific_ending_split) > 2:
	397	cycle_info = file_specific_ending_split[1: -1]
	398	else:
	399	cycle_info = []
	400	file_paths_monitoring.append(
	401	dict(
	402	postfix=postfix,
	403	cycle_info=cycle_info,
	404	extension=extension,
	405	ref_path=self.ref_monitoring_dir,
	406	res_path=self.res_monitoring_dir,
	407	)
	408	)
	409	if os.path.isdir(self.ref_output_dir):
	410	file_names_output = [s for s in next(os.walk(self.ref_output_dir))[2]]
	411	else:
	412	file_names_output = []
	413	file_paths_output = []
	414	for file_name in file_names_output:
	415	file_specific_ending = file_name[len(self.setup_name):]
	416	file_specific_ending_split = file_specific_ending.split('.')
	417	postfix = file_specific_ending_split[0]
	418	if len(file_specific_ending_split) > 1:
	419	extension = file_specific_ending_split[-1]
	420	else:
	421	extension = ''
	422	if len(file_specific_ending_split) > 2:
	423	cycle_info = file_specific_ending_split[1: -1]
	424	else:
	425	cycle_info = []
	426	file_paths_output.append(
	427	dict(
	428	postfix=postfix,
	429	cycle_info=cycle_info,
	430	extension=extension,
	431	ref_path=self.ref_output_dir,
	432	res_path=self.res_output_dir,
	433	)
	434	)
	435	return file_paths_monitoring + file_paths_output
	436
	437	def check(self):
	438	with Logger(self.test_dir, verbose=self.verbose) as logger:
	439	logger.to_log('Checking output files:')
	440	logger.to_all('\n')
	441	failed = False
	442	for file_dict in self.get_checkable_file_dicts():
	443	file_failed = False
	444	ext_list = [file_dict['extension']] if file_dict['extension'] else []
	445	file_specific_ending = '.'.join([file_dict['postfix']] + file_dict['cycle_info'] + ext_list )
	446	logger.to_all(file_table_line_template.format('Checking:', self.setup_name + file_specific_ending))
	447	ref_file_path = os.path.join(file_dict['ref_path'], self.setup_name + file_specific_ending)
	448	res_file_path = os.path.join(file_dict['res_path'], self.job_name + file_specific_ending)
	449	if re.match('_rc', file_dict['postfix']) and not file_dict['extension']:
	450	file_failed, message = FileComparator.compare_ascii(ref_file_path, res_file_path, start_string='Run-control output:\n')
	451	elif re.match('nc', file_dict['extension']):
	452	if self.significant_digits is not None:
	453	if re.match('_ts', file_dict['postfix']) and 'timeseries' in self.significant_digits:
	454	file_failed, message = FileComparator.compare_netcdf(ref_file_path, res_file_path,
	455	digits=self.significant_digits['timeseries'])
	456	elif re.match('_pr', file_dict['postfix']) and 'profiles' in self.significant_digits:
	457	file_failed, message = FileComparator.compare_netcdf(ref_file_path, res_file_path,
	458	digits=self.significant_digits['profiles'])
	459	else:
	460	file_failed, message = FileComparator.compare_netcdf(ref_file_path, res_file_path,
	461	digits=self.significant_digits['other'])
	462	else:
	463	file_failed, message = FileComparator.compare_netcdf(ref_file_path, res_file_path)
	464	else:
	465	message = colored('[ignored]', 'blue')
	466	if file_failed:
	467	failed = True
	468	logger.to_all(message + '\n')
	469	if self.dry_run:
	470	failed = False
	471	return failed
	472
	473
	474	class PALMJob:
	475	"""The PALM job class deals with the execution of a single PALM job"""
	476
	477	@staticmethod
	478	def get_job_name(setup_name, build_name, cores):
	479	return setup_name + '__' + build_name + '__' + str(cores)
	480
	481	def __init__(self, test_dir, test_case, build_name, cores, verbose=False, dry_run=False):
	482	self.test_dir = test_dir
	483	self.test_case = test_case
	484	self.build_name = build_name
	485	self.cores = cores
	486	self.verbose = verbose
	487	self.dry_run = dry_run
	488
	489	self.attempted_debug = False
	490	self.failed_debug = None
	491	self.attempted_non_debug = False
	492	self.failed_non_debug = None
	493
	494	def _link_restart_files(self, build_name):
	495	if self.dry_run:
	496	return True, colored('[restart data dry]', 'blue')
	497	name = self.get_job_name(self.test_case.name, build_name, self.cores)
	498	source_name = self.get_job_name(self.test_case.use_binary_files_from, build_name, self.cores)
	499	source_restart_dir = os.path.join(self.test_dir, 'JOBS', source_name, 'RESTART')
	500	try:
	501	source_data_dirs_grp = [d for r, d, f in os.walk(source_restart_dir)]
	502	except:
	503	source_data_dirs_grp = []
	504	if len(source_data_dirs_grp) == 0:
	505	source_data_dirs = []
	506	else:
	507	source_data_dirs = source_data_dirs_grp[0]
	508	if len(source_data_dirs) == 0 and re.match('.+_debug', build_name):
	509	source_build_name = build_name[:-len('_debug')]
	510	source_name = self.get_job_name(self.test_case.use_binary_files_from, source_build_name, self.cores)
	511	source_restart_dir = os.path.join(self.test_dir, 'JOBS', source_name, 'RESTART')
	512	try:
	513	source_data_dirs_grp = [d for r, d, f in os.walk(source_restart_dir)]
	514	except:
	515	source_data_dirs_grp = []
	516	if len(source_data_dirs_grp) == 0:
	517	source_data_dirs = []
	518	else:
	519	source_data_dirs = source_data_dirs_grp[0]
	520	if len(source_data_dirs) == 0:
	521	source_data_dir = 'no_restart_data'
	522	else:
	523	source_data_dir = sorted(source_data_dirs)[-1]
	524	source_data_dir_path = os.path.join(source_restart_dir, source_data_dir)
	525	if os.path.isdir(source_data_dir_path) and re.match('.+_d3d.*', source_data_dir):
	526	job_restart_dir = os.path.join(self.test_dir, 'JOBS', name, 'RESTART')
	527	os.makedirs(job_restart_dir, exist_ok=exist_ok)
	528	job_data_dir_path = os.path.join(job_restart_dir, name + '_d3d')
	529	os.symlink(source_data_dir_path, job_data_dir_path, target_is_directory=True)
	530	return False, colored('[linked restart data from: ' + source_data_dir_path + ']', 'green')
	531	else:
	532	return True, colored('[no restart data found]', 'red')
	533
	534	def _execute(self, name, build_name):
	535	execution_failed = Executor.execute(
	536	[
	537	os.path.join(self.test_dir, 'trunk', 'SCRIPTS', 'palmrun'),
	538	'-h', '\"' + build_name + '\"',
	539	'-d', name,
	540	'-a', '\"' + ' '.join(self.test_case.activation_strings) + '\"',
	541	'-X', str(self.cores),
	542	'-T', str(self.cores),
	543	'-B',
	544	'-v',
	545	'-z',
	546	],
	547	cwd=self.test_dir,
	548	verbose=self.verbose,
	549	dry_run=self.dry_run,
	550	)
	551
	552	if self.dry_run:
	553	return False, colored('[execution dry]', 'blue')
	554	elif execution_failed:
	555	return True, colored('[execution failed]', 'red')
	556	else:
	557	return False, colored('[execution ok]', 'green')
	558
	559	def _check(self, build_name):
	560	checker = OutputChecker(
	561	self.test_dir,
	562	self.test_case.name,
	563	build_name,
	564	self.cores,
	565	significant_digits=self.test_case.significant_digits,
	566	verbose=self.verbose,
	567	dry_run=self.dry_run,
	568	)
	569	check_failed = checker.check()
	570
	571	if self.dry_run:
	572	return False, colored('[checks dry]', 'blue')
	573	if check_failed:
	574	return True, colored('[checks failed]', 'red')
	575	else:
	576	return False, colored('[checks ok]', 'green')
	577
	578	def execute(self, debug=False):
	579	if debug:
	580	attempted = self.attempted_debug
	581	build_name = self.build_name + '_debug'
	582	failed = self.failed_debug
	583	else:
	584	attempted = self.attempted_non_debug
	585	build_name = self.build_name
	586	failed = self.failed_non_debug
	587
	588	if not attempted:
	589	with Logger(self.test_dir, verbose=self.verbose) as logger:
	590	status_prefix = task_table_line_template.format('Testing:', self.test_case.name, build_name, self.cores)
	591	logger.to_all(status_prefix)
	592	logger.to_log('[started]' + '\n')
	593	attempted = True
	594
	595	name = self.get_job_name(self.test_case.name, build_name, self.cores)
	596
	597	input_dir = os.path.join(self.test_dir, 'JOBS', name, 'INPUT')
	598	os.makedirs(input_dir, exist_ok=exist_ok)
	599
	600	# copying needs to be done per file, because input files need to be renamed
	601	for input_file in self.test_case.input_file_names:
	602	postfix = input_file[len(self.test_case.name):]
	603	src = os.path.join(self.test_case.input_dir, input_file)
	604	dst = os.path.join(input_dir, name + postfix)
	605	shutil.copy(src, dst)
	606
	607	# copying the entire directory is ok, because source files do not need to be renamed
	608	user_code_dir = os.path.join(self.test_dir, 'JOBS', name, 'USER_CODE')
	609	if os.path.isdir(self.test_case.user_code_dir):
	610	shutil.copytree(self.test_case.user_code_dir, user_code_dir, copy_function=shutil.copy)
	611
	612	if self.test_case.requires_binary_files:
	613	link_restart_files_failed, message = self._link_restart_files(build_name)
	614	logger.to_log(status_prefix)
	615	logger.to_log(message + ' ')
	616	logger.to_log('\n')
	617
	618	failed, message = self._execute(name, build_name)
	619	logger.to_log(status_prefix)
	620	logger.to_all(message + ' ')
	621	logger.to_log('\n')
	622
	623	failed, message = self._check(build_name)
	624	logger.to_log(status_prefix)
	625	logger.to_log(message + ' ')
	626
	627	logger.to_all('\n')
	628
	629	if debug:
	630	self.attempted_debug = attempted
	631	self.failed_debug = failed
	632	else:
	633	self.attempted_non_debug = attempted
	634	self.failed_non_debug = failed
	635
	636	return failed
	637
	638	def status(self):
	639	return dict(
	640	attempted=self.attempted_non_debug or self.attempted_debug,
	641	failed=self.failed_non_debug and self.failed_debug,
	642	debugged=self.attempted_debug,
	643	non_debug_failed=self.failed_non_debug,
	644	)
	645
	646
	647	class PALMBuild:
	648	"""The PALM build class deals with configuration and execution of all required PALM builds"""
	649
	650	def __init__(self, test_dir, build_name, verbose=False, dry_run=False):
	651	self.test_dir = test_dir
	652	self.build_name = build_name
	653	self.verbose = verbose
	654	self.dry_run = dry_run
	655	self.configured = False
	656	self.executed = False
	657	self.available = False
	658	self.requires_mpi = False
	659	self.requires_netcdf = False
	660	self.requires_fftw = False
	661	self.requires_rrtmg = False
	662	self.attempted_non_debug = False
	663	self.attempted_debug = False
	664	self.failed_non_debug = None
	665	self.failed_debug = None
	666
	667	def configure(self):
	668	try:
	669	with open(os.path.join(trunk_tests_builds_dir, self.build_name, 'build_config.yml'), 'r') as f:
	670	build_config = yaml.load(f)
	671	except:
	672	return True, colored('[build not found]', 'red')
	673
	674	if 'compiler' in build_config:
	675	self.compiler = build_config['compiler']
	676	else:
	677	return True, colored('[missing \"compiler\" keyword]', 'red')
	678
	679	if not isinstance(self.compiler, dict):
	680	return True, colored('[\"compiler\" keyword must be dict]', 'red')
	681
	682	if 'linker' in build_config:
	683	self.linker = build_config['linker']
	684	else:
	685	return True, colored('[missing \"linker\" keyword]', 'red')
	686
	687	if not isinstance(self.linker, dict):
	688	return True, colored('[\"linker\" keyword must be dict]', 'red')
	689
	690	if 'mpi_wrapper' in self.compiler:
	691	if 'mpi_wrapper}}' in self.compiler['mpi_wrapper']:
	692	self.requires_mpi = True
	693	else:
	694	return True, colored('[missing \"mpi_wrapper\" keyword]', 'red')
	695
	696	if 'includes' in self.compiler:
	697	for include in self.compiler['includes']:
	698	if 'include.netcdf}}' in include:
	699	self.requires_netcdf = True
	700	if 'include.fftw}}' in include:
	701	self.requires_fftw = True
	702	if 'include.rrtmg}}' in include:
	703	self.requires_rrtmg = True
	704	else:
	705	return True, colored('[missing \"includes\" keyword in compiler]', 'red')
	706
	707	if 'options' in self.linker:
	708	for lib in self.linker['options']:
	709	if 'lib.netcdf}}' in lib:
	710	self.requires_netcdf = True
	711	if 'lib.fftw}}' in lib:
	712	self.requires_fftw = True
	713	if 'lib.rrtmg}}' in lib:
	714	self.requires_rrtmg = True
	715	else:
	716	return True, colored('[missing \"options\" keyword in linker]', 'red')
	717
	718	library_names = []
	719	if self.requires_netcdf:
	720	library_names.append('netcdf')
	721	if self.requires_fftw:
	722	library_names.append('fftw')
	723	if self.requires_rrtmg:
	724	library_names.append('rrtmg')
	725
	726	if not 'executable' in self.compiler:
	727	return True, colored('[missing \"executable\" keyword in compiler]', 'red')
	728
	729	if not 'definitions' in self.compiler:
	730	return True, colored('[missing \"definitions\" keyword in compiler]', 'red')
	731
	732	if not 'options' in self.compiler:
	733	return True, colored('[missing \"options\" keyword in compiler]', 'red')
	734
	735	if not 'default' in self.compiler['options']:
	736	return True, colored('[missing \"default\" keyword in compiler.options]', 'red')
	737
	738	if not 'debug' in self.compiler['options']:
	739	return True, colored('[missing \"debug\" keyword in compiler.options]', 'red')
	740
	741	try:
	742	with open(os.path.join(workspace_dir, 'palmtest.yml'), 'r') as f:
	743	palmtest_config = yaml.load(f)
	744	except:
	745	return True, colored('[palmtest.yml not found]', 'red')
	746
	747	if 'palm_config_template' in palmtest_config:
	748	if isinstance(palmtest_config['palm_config_template'], str):
	749	custom_template = palmtest_config['palm_config_template']
	750	try:
	751	with open(os.path.join(custom_template), 'r') as palm_config_template_file:
	752	template = palm_config_template_file.read()
	753	except:
	754	try:
	755	with open(os.path.join(scripts_dir, '.palm.config.default.in'), 'r') as palm_config_template_file:
	756	template = palm_config_template_file.read()
	757	except:
	758	return True, colored('[trunk/SCRIPTS/.palm.config.default.in not found]', 'red')
	759
	760	template = template.replace('@CMAKE_INSTALL_PREFIX@', self.test_dir)
	761	template = template.replace('@PALM_HOSTNAME@', socket.gethostname())
	762	template = template.replace('@CMAKE_USERNAME@', getpass.getuser())
	763	template = template.replace('@MPI_Fortran_COMPILER@', self.compiler['mpi_wrapper'])
	764	template = template.replace('@CMAKE_Fortran_COMPILER@', self.compiler['executable'])
	765	cpp_options_str = ['-D' + s for s in self.compiler['definitions']]
	766	template = template.replace('@PALM_CPP_OPTIONS_STR@', ' '.join(cpp_options_str))
	767	template = template.replace('@PALM_CORES@', str(available_cores))
	768	template = template.replace('@PALM_COMPILER_OPTIONS@', '{{palmtest.compiler.options}} ' + ' '.join(self.compiler['includes']))
	769	template = template.replace('@PALM_LINKER_OPTIONS@', ' '.join(self.linker['options']))
	770
	771	if 'environments' in palmtest_config:
	772	available_environments = palmtest_config['environments']
	773	else:
	774	return True, colored('[missing \"environments\" keyword in palmtest.yml]', 'red')
	775
	776	if 'id' in self.compiler:
	777	c_id = self.compiler['id']
	778	else:
	779	return True, colored('[missing \"id\" keyword in compiler]', 'red')
	780
	781	if c_id in available_environments:
	782	self.available = True
	783
	784	environment = available_environments[c_id]
	785	if 'executable' not in environment:
	786	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"executable\"]', 'red')
	787	value = environment['executable']
	788	if isinstance(value, str):
	789	template = template.replace('{{' + '.'.join([c_id, 'executable']) + '}}', value)
	790	if self.requires_mpi:
	791	if 'mpi_wrapper' not in environment:
	792	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"mpi_wrapper\"]', 'red')
	793	value = environment['mpi_wrapper']
	794	if isinstance(value, str):
	795	template = template.replace('{{' + '.'.join([c_id, 'mpi_wrapper']) + '}}', value)
	796	if 'include' not in environment:
	797	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"include\"]', 'red')
	798	if 'lib' not in environment:
	799	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"lib\"]', 'red')
	800	for lib in library_names:
	801	if lib not in environment['include']:
	802	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"include.'+lib+'\"]', 'red')
	803	value = environment['include'][lib]
	804	if isinstance(value, str):
	805	template = template.replace('{{' + '.'.join([c_id, 'include', lib]) + '}}', value)
	806	if lib not in environment['lib']:
	807	return True, colored('[palmtest.yml environment \"' + c_id + '\" has no \"lib.'+lib+'\"]', 'red')
	808	value = environment['lib'][lib]
	809	if isinstance(value, str):
	810	template = template.replace('{{' + '.'.join([c_id, 'lib', lib]) + '}}', value)
	811
	812	with open(os.path.join(self.test_dir, '.palm.config.' + self.build_name), 'w') as palm_config_file:
	813	palm_config_file.write(
	814	template.replace(
	815	'{{palmtest.compiler.options}}',
	816	' '.join(self.compiler['options']['default']),
	817	)
	818	)
	819	with open(os.path.join(self.test_dir, '.palm.config.' + self.build_name + '_debug'), 'w') as palm_config_file:
	820	palm_config_file.write(
	821	template.replace(
	822	'{{palmtest.compiler.options}}',
	823	' '.join(self.compiler['options']['debug']),
	824	)
	825	)
	826	self.configured = True
	827	return False, colored('[configuration ok]', 'green')
	828
	829	else:
	830	return True, colored('[palmtest.yml environment \"' + c_id + '\" not found]', 'red')
	831
	832	def _execute(self, build_name):
	833	self.attempted = True
	834	build_failed = Executor.execute(
	835	[
	836	os.path.join(self.test_dir, 'trunk', 'SCRIPTS', 'palmbuild'),
	837	'-h', '\"' + build_name + '\"',
	838	'-v',
	839	],
	840	cwd=self.test_dir,
	841	verbose=self.verbose,
	842	dry_run=self.dry_run,
	843	)
	844
	845	if self.dry_run:
	846	return False, colored('[build dry]', 'blue')
	847	if build_failed:
	848	return True, colored('[build failed]', 'red')
	849	else:
	850	return False, colored('[build ok]', 'green')
	851
	852	def build(self, debug=False):
	853	if debug:
	854	attempted = self.attempted_debug
	855	build_name = self.build_name + '_debug'
	856	failed = self.failed_debug
	857	else:
	858	attempted = self.attempted_non_debug
	859	build_name = self.build_name
	860	failed = self.failed_non_debug
	861
	862	if not attempted:
	863	with Logger(self.test_dir, verbose=self.verbose) as logger:
	864	status_prefix = task_table_line_template.format('Building:', '', build_name, '')
	865	logger.to_all(status_prefix)
	866	logger.to_log('[started]' + '\n')
	867	attempted = True
	868
	869	failed, message = self._execute(build_name)
	870	logger.to_log(status_prefix)
	871	logger.to_all(message + ' ')
	872	logger.to_all('\n')
	873
	874	if debug:
	875	self.attempted_debug = attempted
	876	self.failed_debug = failed
	877	else:
	878	self.attempted_non_debug = attempted
	879	self.failed_non_debug = failed
	880
	881	return failed
	882
	883	def report(self):
	884	return dict(
	885	failed_debug=self.failed_debug,
	886	failed_non_debug=self.failed_non_debug,
	887	)
	888
	889
	890	class PALMTestCase:
	891	"""The PALM test case class deals with the configuration and execution of all PALM test cases"""
	892
	893	def __init__(self,test_dir, name, verbose=False, dry_run=False):
	894	self.test_dir = test_dir
	895	self.name = name
	896	self.verbose = verbose
	897	self.dry_run = dry_run
	898	self.user_code_dir = os.path.join(trunk_tests_cases_dir, self.name, 'USER_CODE')
	899	self.input_dir = os.path.join(trunk_tests_cases_dir, self.name, 'INPUT')
	900	self.number_of_cores = []
	901	self.build_names = []
	902	self.input_file_names = []
	903	self.configured = False
	904
	905	def configure(self, requested_build_names, requested_cores):
	906	f_name = os.path.join(trunk_tests_cases_dir, self.name, 'case_config.yml')
	907	try:
	908	with open(f_name, 'r') as f:
	909	config = yaml.load(f)
	910	except:
	911	return True, colored('[Case \"' + self.name + '\" could not be found.]', 'red')
	912	try:
	913	self.use_binary_files_from = config['use_binary_files_from']
	914	except:
	915	self.use_binary_files_from = None
	916	self.requires_binary_files = bool(self.use_binary_files_from)
	917
	918	if 'allowed_builds' not in config:
	919	return True, colored('[missing \"allowed_builds\" keyword]', 'red')
	920	self.allowed_build_names = config['allowed_builds']
	921
	922	if 'allowed_number_of_cores' not in config:
	923	return True, colored('[missing \"allowed_number_of_cores\" keyword]', 'red')
	924	self.allowed_number_of_cores = config['allowed_number_of_cores']
	925
	926	if 'activation_strings' not in config:
	927	return True, colored('[missing \"activation_strings\" keyword]', 'red')
	928	self.activation_strings = config['activation_strings']
	929
	930	if 'significant_digits_for_netcdf_checks' not in config:
	931	return True, colored('[missing \"significant_digits_for_netcdf_checks\" keyword]', 'red')
	932	self.significant_digits = config['significant_digits_for_netcdf_checks']
	933
	934	if 'timeseries' not in config['significant_digits_for_netcdf_checks']:
	935	return True, colored('[missing \"timeseries\" keyword in significant_digits_for_netcdf_checks]', 'red')
	936
	937	if 'profiles' not in config['significant_digits_for_netcdf_checks']:
	938	return True, colored('[missing \"profiles\" keyword in significant_digits_for_netcdf_checks]', 'red')
	939
	940	if 'other' not in config['significant_digits_for_netcdf_checks']:
	941	return True, colored('[missing \"other\" keyword in significant_digits_for_netcdf_checks]', 'red')
	942
	943	self.number_of_cores = sorted(set(requested_cores).intersection(self.allowed_number_of_cores))
	944	self.build_names = sorted(set(requested_build_names).intersection(self.allowed_build_names))
	945	self.input_file_names = [s for s in next(os.walk(self.input_dir))[2]]
	946	self.configured = True
	947	if len(self.number_of_cores) == 0 :
	948	return True, colored('[no allowed cores requested]', 'blue')
	949	if len(self.build_names) == 0:
	950	return True, colored('[no allowed builds requested]', 'blue')
	951	if len(self.input_file_names) == 0:
	952	return True, colored('[no input files found]', 'red')
	953	return False, colored('[configuration ok]', 'green')
	954
	955
	956
	957	class PALMTest:
	958
	959	def __init__(self, args):
	960	self.verbose = args.verbose
	961	self.no_auto_debug = args.no_auto_debug
	962	self.force_debug = args.force_debug
	963	self.fail_on_debug = args.fail_on_debug
	964	self.dry_run = args.dry_run
[3354]	965	self.no_color = args.no_color
[3353]	966	self.test_id = args.test_id
	967	self.test_case_names = args.cases
	968	self.requested_build_names = args.builds
	969	self.requested_cores = args.cores
	970	self.test_case_queue = []
	971	self.build_database = dict()
	972
	973	def prepare(self):
[3354]	974	global disable_colored_output
	975	disable_colored_output = self.no_color
[3353]	976	self.test_dir = os.path.join(tests_dir, self.test_id)
	977	try:
	978	os.makedirs(self.test_dir, exist_ok=exist_ok)
	979	except:
	980	print('ERROR: Found existing test directory: ' + self.test_dir)
	981	exit(1)
	982	with Logger(self.test_dir, verbose=self.verbose) as logger:
	983	logger.to_all(hline)
	984	logger.to_all('This is the PALM tester (version: ' + version + ')' + '\n')
	985	logger.to_all(hline)
	986	try:
	987	with open(os.path.join(workspace_dir, 'palmtest.yml'), 'r') as f:
	988	pass
	989	except:
	990	logger.to_all('ERROR: No palmtest.yml file was found in your working directory!\n')
	991	logger.to_all('INFO: A template for this file can be found at: trunk/TESTS/palmtest.yml\n')
	992	logger.to_all(' Please copy the template to your working directory and adjust it to your system!\n')
	993	exit(1)
	994
	995	self.execution_trunk_dir = os.path.join(self.test_dir, 'trunk')
	996	os.symlink(trunk_dir, self.execution_trunk_dir)
	997	self.execution_jobs_dir = os.path.join(self.test_dir, 'JOBS')
	998	os.makedirs(self.execution_jobs_dir, exist_ok=exist_ok)
	999
	1000	try:
	1001	with open(os.path.join(scripts_dir, '.palm.iofiles'), 'r') as iofiles_template_file:
	1002	iofiles_template = iofiles_template_file.read()
	1003	with open(os.path.join(self.test_dir, '.palm.iofiles'), 'w') as iofiles_file:
	1004	iofiles_file.write(iofiles_template.replace('$fast_io_catalog', '$base_data'))
	1005	except:
	1006	logger.to_all('ERROR: No .palm.iofiles file was found in trunk/SCRIPTS/')
	1007	exit(1)
	1008
	1009	final_cores_list = list(filter(lambda x: x <= available_cores, self.requested_cores))
	1010
	1011	logger.to_all(config_table_line_template.format('Object:', 'Name:', 'Action:') + 'Status:\n')
	1012	logger.to_all(hline)
	1013
	1014	if 'all' in self.requested_build_names:
[3354]	1015	self.requested_build_names = [name for name in next(os.walk(trunk_tests_builds_dir))[1] if not name[0] == '.']
[3353]	1016	found_build_names = []
	1017	for build_name in self.requested_build_names:
	1018	build = PALMBuild(self.test_dir, build_name, verbose=self.verbose, dry_run=self.dry_run)
	1019	configuration_failed, message = build.configure()
	1020	if not configuration_failed:
	1021	self.build_database[build_name] = build
	1022	found_build_names.append(build_name)
	1023	logger.to_all(config_table_line_template.format('Build', build_name, 'approved'))
	1024	logger.to_all(message + '\n')
	1025	else:
	1026	logger.to_all(config_table_line_template.format('Build', build_name, 'rejected'))
	1027	logger.to_all(message + '\n')
	1028	final_build_list = found_build_names
	1029
	1030	if 'all' in self.test_case_names:
[3354]	1031	self.test_case_names = sorted([name for name in next(os.walk(trunk_tests_cases_dir))[1] if not name[0] == '.'])
[3353]	1032
	1033	additional_initial_runs_2 = [self.test_case_names]
	1034	while len(additional_initial_runs_2[-1]) > 0:
	1035	additional_initial_runs_1 = []
	1036	for test_case_name in additional_initial_runs_2[-1]:
	1037	test_case = PALMTestCase(self.test_dir, test_case_name, verbose=self.verbose)
	1038	test_case_configuration_failed, message = test_case.configure(final_build_list, final_cores_list)
	1039	if not test_case_configuration_failed:
	1040	if test_case.requires_binary_files:
	1041	additional_initial_runs_1.append(test_case.use_binary_files_from)
	1042	additional_initial_runs_2.append(sorted(set(additional_initial_runs_1)))
	1043
	1044	test_case_order = []
	1045	for i in range(len(additional_initial_runs_2)-1):
	1046	# low and high refer to priority
	1047	low = additional_initial_runs_2[i]
	1048	high = additional_initial_runs_2[i+1]
	1049	for item in high:
	1050	while item in low:
	1051	low.remove(item)
	1052	test_case_order.append(low)
	1053
	1054	test_case_order_no_dublicates = []
	1055	for test_cases in test_case_order:
	1056	seen = set()
	1057	seen_add = seen.add
	1058	test_case_order_no_dublicates.append( [x for x in test_cases if not (x in seen or seen_add(x))] )
	1059
	1060	approved_test_case_order = [[]] + list(reversed(test_case_order_no_dublicates))
	1061	for i, test_cases in enumerate(list(approved_test_case_order)):
	1062	info = 'Case (dep)' if i < len(approved_test_case_order)-1 else 'Case'
	1063	for test_case_name in list(test_cases):
	1064	sys.stdout.flush()
	1065	test_case = PALMTestCase(self.test_dir, test_case_name, verbose=self.verbose)
	1066	test_case_configuration_failed, message = test_case.configure(final_build_list, final_cores_list)
	1067	if test_case_configuration_failed:
	1068	# removing as configuration failed should only apply to added dependencies
	1069	approved_test_case_order[i].remove(test_case_name)
	1070	logger.to_all(config_table_line_template.format(info, test_case_name, 'rejected'))
	1071	logger.to_all(message + '\n')
	1072	elif test_case.requires_binary_files:
	1073	if test_case.use_binary_files_from not in approved_test_case_order[i-1]:
	1074	# removing as dependency is already removed
	1075	approved_test_case_order[i].remove(test_case_name)
	1076	logger.to_all(config_table_line_template.format(info, test_case_name, 'disabled'))
	1077	logger.to_all(colored('[requires dependency \"' + test_case.use_binary_files_from + '\"]', 'red') + '\n')
	1078	else:
	1079	logger.to_all(config_table_line_template.format(info, test_case_name, 'approved'))
	1080	logger.to_all(message + '\n')
	1081	else:
	1082	logger.to_all(config_table_line_template.format(info, test_case_name, 'approved'))
	1083	logger.to_all(message + '\n')
	1084
	1085	final_case_list = []
	1086	for cases in approved_test_case_order:
	1087	for case in cases:
	1088	if case not in final_case_list:
	1089	final_case_list.append(case)
	1090
	1091	for build_name in final_build_list:
	1092	build = PALMBuild(
	1093	self.test_dir,
	1094	build_name,
	1095	verbose=self.verbose,
	1096	dry_run=self.dry_run,
	1097	)
	1098	configuration_failed, message = build.configure()
	1099	if not configuration_failed:
	1100	self.build_database[build_name] = build
	1101	else:
	1102	logger.to_all(message + '\n')
	1103
	1104	for case_name in final_case_list:
	1105	test_case = PALMTestCase(
	1106	self.test_dir,
	1107	case_name,
	1108	verbose=self.verbose,
	1109	dry_run=self.dry_run,
	1110	)
	1111	test_case_configuration_failed, message = test_case.configure(final_build_list, final_cores_list)
	1112	if not test_case_configuration_failed:
	1113	self.test_case_queue.append(test_case)
	1114	logger.to_all(hline)
	1115
	1116	r = '{:' + str(table_width_intro) + '} '
	1117
	1118	logger.to_all(r.format('Test ID:') + self.test_id + '\n')
	1119	logger.to_all(r.format('Builds:') + str('\n' + r.format('')).join(sorted(self.build_database.keys())) + '\n')
	1120	logger.to_all(r.format('Cases:') + str('\n' + r.format('')).join([c.name for c in self.test_case_queue]) + '\n')
	1121	logger.to_all(r.format('Cores:') + ' '.join([str(i) for i in final_cores_list]) + '\n')
	1122
	1123	def _execute(self, test_case, build_name, cores):
	1124	job = PALMJob(
	1125	self.test_dir,
	1126	test_case,
	1127	build_name,
	1128	cores,
	1129	verbose=self.verbose,
	1130	dry_run=self.dry_run
	1131	)
	1132	if self.force_debug:
	1133	build_failed_non_debug = True
	1134	job_failed_non_debug = True
	1135	build_failed_debug = self.build_database[build_name].build(debug=True)
	1136	if build_failed_debug:
	1137	job_failed_debug = True
	1138	else:
	1139	job_failed_debug = job.execute(debug=True)
	1140	elif self.no_auto_debug:
	1141	build_failed_non_debug = self.build_database[build_name].build(debug=False)
	1142	if build_failed_non_debug:
	1143	job_failed_non_debug = True
	1144	else:
	1145	job_failed_non_debug = job.execute(debug=False)
	1146	build_failed_debug = None
	1147	job_failed_debug = None
	1148	else:
	1149	build_failed_non_debug = self.build_database[build_name].build(debug=False)
	1150	if build_failed_non_debug:
	1151	job_failed_non_debug = True
	1152	build_failed_debug = self.build_database[build_name].build(debug=True)
	1153	if build_failed_debug:
	1154	job_failed_debug = False
	1155	else:
	1156	job_failed_debug = job.execute(debug=True)
	1157	else:
	1158	job_failed_non_debug = job.execute(debug=False)
	1159	if job_failed_non_debug:
	1160	build_failed_debug = self.build_database[build_name].build(debug=True)
	1161	if build_failed_debug:
	1162	job_failed_debug = True
	1163	else:
	1164	job_failed_debug = job.execute(debug=True)
	1165	else:
	1166	build_failed_debug = None
	1167	job_failed_debug = None
	1168	return dict(
	1169	build_failed_non_debug=build_failed_non_debug,
	1170	job_failed_non_debug=job_failed_non_debug,
	1171	build_failed_debug=build_failed_debug,
	1172	job_failed_debug=job_failed_debug,
	1173	)
	1174
	1175	def execute(self):
	1176	with Logger(self.test_dir, verbose=self.verbose) as logger:
	1177	logger.to_all(hline)
	1178	logger.to_all(task_table_line_template.format('Task:', 'Case:', 'Build:', 'Cores:') + 'Status:\n')
	1179	logger.to_all(hline)
	1180	self.test_report = dict()
	1181	for test_case in self.test_case_queue:
	1182	logger.to_log(hline)
	1183	logger.to_file(hline)
	1184	logger.to_file(hline)
	1185	status_dict = dict()
	1186	for build_name in test_case.build_names:
	1187	status_dict[build_name] = dict()
	1188	for cores in test_case.number_of_cores:
	1189	status_dict[build_name][cores] = self._execute(test_case, build_name, cores)
	1190	self.test_report[test_case.name] = status_dict
	1191	logger.to_log(hline)
	1192	logger.to_file('\n' * 10)
	1193
	1194	def report(self):
	1195	with Logger(self.test_dir, verbose=self.verbose) as logger:
	1196	logger.to_all(hline)
	1197	r = '{:10}' + ' total: ' + '{:<3d}' + \
	1198	' ok: ' + colored('{:<3d}', 'green') + \
	1199	' debugged: ' + colored('{:<3d}', 'yellow') + \
	1200	' failed: ' + colored('{:<3d}', 'red')
	1201	n_all = 0
	1202	n_ok = 0
	1203	n_debugged = 0
	1204	n_failed = 0
	1205	for build_name, build in self.build_database.items():
	1206	status = build.report()
	1207	b = status['failed_non_debug']
	1208	bd = status['failed_debug']
	1209	n_all += 1
	1210	if not b and b is not None:
	1211	n_ok += 1
	1212	if bd is not None:
	1213	n_debugged += 1
	1214	if b and (bd or bd is None):
	1215	n_failed += 1
	1216	logger.to_all(r.format('Builds:', n_all, n_ok, n_debugged, n_failed) + '\n')
	1217	total_failed = n_failed
	1218	total_debugged = n_debugged
	1219	n_all = 0
	1220	n_ok = 0
	1221	n_debugged = 0
	1222	n_failed = 0
	1223	# {'case_name': {'build_name': {4: {'build_failed_debug': None,
	1224	# 'build_failed_non_debug': False,
	1225	# 'job_failed_debug': None,
	1226	# 'job_failed_non_debug': False}}},
	1227	for case_name, case in self.test_report.items():
	1228	for build_name, build in case.items():
	1229	for cores, results in build.items():
	1230	n_all += 1
	1231	b = results['build_failed_non_debug']
	1232	bd = results['build_failed_debug']
	1233	j = results['job_failed_non_debug']
	1234	jd = results['job_failed_debug']
	1235	if not j:
	1236	n_ok += 1
	1237	if jd is not None:
	1238	n_debugged += 1
	1239	if j and (jd or jd is None):
	1240	n_failed += 1
[3354]	1241	logger.to_all(r.format('Tests:', n_all, n_ok, n_debugged, n_failed) + '\n')
[3353]	1242	total_failed += n_failed
	1243	total_debugged += n_debugged
	1244	if self.fail_on_debug:
	1245	return (total_failed + total_debugged) > 0
	1246	else:
	1247	return total_failed > 0
	1248
	1249
	1250	class CustomCompleter:
	1251
	1252	def __init__(self):
	1253	pass
	1254
	1255	def __call__(self, prefix, parsed_args, **kwargs):
	1256	return (i for i in self.get_items() if i.startswith(prefix))
	1257
	1258	def get_items(self):
	1259	return []
	1260
	1261
	1262	class CaseCompleter(CustomCompleter):
	1263
	1264	def get_items(self):
[3354]	1265	case_names = [name for name in next(os.walk(trunk_tests_cases_dir))[1] if not name[0] == '.']
[3353]	1266	return case_names + ['all']
	1267
	1268
	1269	class BuildCompleter(CustomCompleter):
	1270
	1271	def get_items(self):
[3354]	1272	build_names = [name for name in next(os.walk(trunk_tests_builds_dir))[1] if not name[0] == '.']
[3353]	1273	return build_names + ['all']
	1274
	1275
	1276	class PALMTestArgumentParser(ArgumentParser):
	1277
	1278	def __init__(self):
	1279	super().__init__(
	1280	description='This is the PALM tester\n' +
	1281	'Developer Support: knoop@muk.uni-hannover.de',
	1282	formatter_class=RawTextHelpFormatter,
	1283	add_help=True,
	1284	allow_abbrev=False,
	1285	)
	1286	self.add_argument(
	1287	'--version',
	1288	action='version',
	1289	version=version,
	1290	)
	1291	self.add_argument(
	1292	'--verbose',
	1293	action='store_true',
	1294	dest='verbose',
	1295	help='Increase verbosity of terminal output.',
	1296	required=False,
	1297	)
	1298	self.add_argument(
	1299	'--no-auto-debug',
	1300	action='store_true',
	1301	dest='no_auto_debug',
	1302	help='Disable automatic debugging in case of test failure.',
	1303	required=False,
	1304	)
	1305	self.add_argument(
	1306	'--force-debug',
	1307	action='store_true',
	1308	dest='force_debug',
	1309	help='Force debugging regardless of test failure (ignores --no-auto-debug).',
	1310	required=False,
	1311	)
	1312	self.add_argument(
	1313	'--fail-on-debug',
	1314	action='store_true',
	1315	dest='fail_on_debug',
	1316	help='Return a non-zero exit status in case debugging was required.',
	1317	required=False,
	1318	)
	1319	self.add_argument(
	1320	'--dry-run',
	1321	action='store_true',
	1322	dest='dry_run',
	1323	help='Prepare and process all requested tests without actually building or executing PALM.',
	1324	required=False,
	1325	)
	1326	self.add_argument(
[3354]	1327	'--no-color',
	1328	action='store_true',
	1329	dest='no_color',
	1330	help='Disable colored terminal output.',
	1331	required=False,
	1332	)
	1333	self.add_argument(
[3353]	1334	'--cases',
	1335	action='store',
	1336	dest='cases',
	1337	default=['all'],
	1338	help='A list of test cases to be executed. (default: %(default)s)',
	1339	nargs='+',
	1340	required=False,
	1341	type=str,
	1342	metavar='STR',
	1343	).completer = CaseCompleter()
	1344	self.add_argument(
	1345	'--builds',
	1346	action='store',
	1347	dest='builds',
	1348	default=['all'],
	1349	help='A list of builds to be executed. (default: %(default)s)',
	1350	nargs='+',
	1351	required=False,
	1352	type=str,
	1353	metavar='STR',
	1354	).completer = BuildCompleter()
	1355	self.add_argument(
	1356	'--cores',
	1357	action='store',
	1358	dest='cores',
	1359	default=[i for i in range(1, available_cores+1)],
	1360	choices=[i for i in range(1, available_cores+1)],
	1361	help='The number of cores tests are supposed to be executed on. (default: %(default)s)',
	1362	nargs='+',
	1363	required=False,
	1364	type=int,
	1365	metavar='INT',
	1366	)
	1367	self.add_argument(
	1368	'--test-id',
	1369	action='store',
	1370	dest='test_id',
	1371	default=datetime.now().strftime('%Y-%m-%d_%H:%M:%S.%f'),
	1372	help='An individual test id. (default: current timestamp)',
	1373	required=False,
	1374	type=str,
	1375	metavar='STR',
	1376	)
	1377
	1378
	1379	if __name__ == '__main__':
	1380	parser = PALMTestArgumentParser()
	1381	if has_argcomplete:
	1382	argcomplete.autocomplete(parser)
	1383	args = parser.parse_args()
	1384	palm_test = PALMTest(args)
	1385	palm_test.prepare()
	1386	palm_test.execute()
	1387	failed = palm_test.report()
	1388	exit(1 if failed else 0)

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