Home

Context Navigation

source: palm/trunk/SCRIPTS/mrun_new @ 1

Last change on this file since 1 was 1, checked in by raasch, 17 years ago
Initial repository layout and content
File size: 148.2 KB

Line
1	#!/bin/ksh
2
3	##!/home/DSRC/NC/tatuyama/pub/ksh NEEDED ON NEC AT RIAM !!!!!!!!!!
4
5	# mrun - Plot-Shellskript Version: @(#)MRUN 1.8 07/02/07
6
7	# Prozedur zum Starten von Modellaeufen
8
9	# letzte Aenderung:
10	# 03/03/94 - Siggi - Entwicklungsbeginn
11	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
12	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
13	# zelne Variable exportiert. Dies ist noetig, weil an-
14	# sonsten irgendein Speicher ueberlaeuft und von mrun
15	# aufgerufene Programme (z.B. stageout) mit Fehlern
16	# abbrechen (too many arguments)
17	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
18	# defaultmaessig im RRZN-Profile eingeschaltet
19	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
20	# wegfallen
21	# 25/04/00 - Siggi - Version 1.5
22	# remote_addres und remote_user in return_addres bzw.
23	# return_username umbenannt, return_username wird dem
24	# mrun-Aufruf im Job ueber Option -U mitgegeben.
25	# Neue Variable remote_username, die beim interaktiven
26	# mrun-Aufruf zwingend ueber die neue Option -u oder
27	# in der Konfigurationsdatei angegeben werden muss.
28	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
29	# Version 1.7
30	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
31	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
32	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
33	# zu bestimmen; Praeprozessoroptionen haben nun alle
34	# die Form -Dtext=text, weil auf IBM sonst text durch
35	# die leere Zeichenkette ersetzt wird
36	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
37	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
38	# (-D$OMP=OMP) in order to avoid problems with
39	# OMP_NUM_THREADS
40	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
41	# tar files, one for each node used
42	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
43	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
44	# 17/01/05 - Siggi - job for data transfer to local machine now within
45	# job class c1 (HLRN)
46	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
47	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
48	# base filename and cycle number
49	# 16/02/05 - Gerald - hababai validated
50	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
51	# 29/03/05 - Marcus - berni*-en0 validated
52	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
53	# 24/04/05 - Siggi - netcdf support on lcmuk
54	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
55	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
56	# number) can now be used within interactive runs
57	# 12/05/05 - Siggi - netcdf support on ibm
58	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
59	# 18/05/05 - Siggi - netcdf support on nec
60	# 24/05/05 - Siggi - netcdf support on ibms
61	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
62	# to 30 seconds
63	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
64	# PATH is temporarily set)
65	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
66	# caused warnings in the job protocol
67	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
68	# 25/10/05 - Siggi - error in listing files for getting the cycle number
69	# removed
70	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
71	# realized by file attribute trpe
72	# 28/10/05 - Siggi - if existing, the file extension is output in case
73	# of missing input file - no job abort in case of
74	# missing input files with file extensions
75	# (preliminary solution)
76	# 31/10/05 - Siggi - data transfer from nech now within seperate job
77	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
78	# 07/12/05 - Siggi - gallego and elephanta admitted
79	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
80	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
81	# 20/01/06 - Siggi - cpp directive for ibmy
82	# 09/02/06 - Siggi - ibmy admitted for batch mode
83	# 13/04/06 - Siggi - ostria admitted
84	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
85	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
86	# optimization of OpenMP runs (option stacksize is
87	# necessary for large gridpoint numbers because
88	# otherwise a segmentation fault occurs)
89	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
90	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
91	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
92	# 20/09/06 - Marcus - add DVRP library on nech
93	# 24/10/06 - Siggi - Environment variables for PALM steering are written
94	# on local NAMELIST file ENVPAR
95	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
96	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
97	# 06/02/07 - Siggi - add DVRP library on lcmuk
98	# 07/02/07 - Siggi - revision of source code handling, source code is
99	# now expected in directory given by source_path and
100	# not in the current working directory, source code
101	# files provided in add_source_path are allways
102	# compiled, source code to be compiled is allways
103	# sampled in SOURCES_FOR_RUN_$fname which is a
104	# subdirectory of the current working directory,
105	# -s TEST changed to -s CHANGED_FILES or -s CF,
106	# adapted for RIAM (neck)
107
108
109
110
111	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
112
113	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
114	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
115	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
116
117	AddFilenames=""
118	additional_conditions=""
119	add_source_path=""
120	afname=""
121	archive_save=true
122	archive_system=none
123	compiler_name=""
124	cond1=""
125	cond2=""
126	config_file=.mrun.config
127	continuation_run=false
128	cpp_opts=""
129	cpumax=0
130	cpurest=0
131	delete_temporary_catalog=true
132	do_batch=false
133	do_compile=true
134	do_remote=false
135	do_stagein=true
136	do_stageout=true
137	do_trace=false
138	email_notification=""
139	exclude=""
140	executable=""
141	execution_error=false
142	filetransfer_protocol=""
143	fname=test
144	fromhost=""
145	host=""
146	host_file=""
147	hp=""
148	ignore_archive_error=false
149	input_list=""
150	interpreted_config_file=""
151	job_on_file=""
152	keep_data_from_previous_run=false
153	localhost_realname=$(hostname)
154	local_compile=false
155	locat=normal
156	mainprog=""
157	makefile=""
158	mc=$0
159	while [[ $(echo $mc \| grep -c "/") != 0 ]]
160	do
161	mc=`echo $mc \| cut -f2- -d"/"`
162	done
163	module_files=""
164	MODULE_OPTIONS=""
165	mrun_script_name=$mc
166	netcdf_support=false
167	node_usage=default
168	numprocs=""
169	OOPT=""
170	openmp=false
171	output_list=""
172	package_list=""
173	punkte="..........................................................."
174	queue=none
175	read_from_config=""
176	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
177	if [[ $return_addres = 130.75.105.158 ]]
178	then
179	return_addres=172.20.25.41
180	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
181	fi
182	# if [[ $return_addres = 210.117.65.1 ]]
183	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
184	# then
185	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
186	# fi
187	return_password=""
188	return_username=$LOGNAME
189	remotecall=false
190	remote_username=""
191	run_mode=""
192	scirocco=false
193	store_on_archive_system=true
194	striche=" ----------------------------------------------------------------------------"
195	silent=false
196	source_list=""
197	source_path=SOURCE
198	tasks_per_node=""
199	threads_per_task=1
200	tmpcreate=false
201	tmp_data_catalog=""
202	transfer_problems=false
203	usern=$LOGNAME
204	use_makefile=""
205	working_directory=`pwd`
206	TOPT=""
207	XOPT=""
208	zeit=$( date \| cut -c 12-19 )
209
210	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
211	typeset -i cputime i ii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
212
213	typeset -R40 calltime
214	typeset -L20 spalte1
215	typeset -L40 spalte2
216	typeset -L60 spalte3
217	typeset -L35 string1=`date`
218	typeset -L12 string2=$usern
219	typeset -L12 string3=$localhost_realname
220	typeset -L12 string4
221	typeset -L12 string5
222	typeset -L20 version="MRUN 1.8"
223
224
225
226	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
227	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
228
229	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
230	# EXPORTIERT WERDEN
231	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
232	export input_list memory numprocs output_list queue run_mode
233
234
235
236	# FEHLERBEHANDLUNG
237	# BEI EXIT:
238	trap 'if [[ $locat != localhost ]]
239	then
240	if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
241	then
242	cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
243	MRUN-calls on $localhost
244
245	date and time user localhost remotehost termination mrun-command
246	--------------------------------------------------------------------------------------------------------------------
247	%STATEND%
248	chmod 666 ${mrun_path}/statistik/mrun_statistik
249	fi
250
251	# EINTRAG IN DIE STATISTIK-DATEI
252	string4=$host
253	string5=$locat
254	if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
255	then
256	if [[ $do_batch = true ]]
257	then
258	printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
259	else
260	printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
261	fi
262	fi
263	fi
264
265	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
266	then
267
268	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
269	(( i = 0 ))
270	while (( i < iec ))
271	do
272	(( i = i + 1 ))
273	printf "\n *** Execution of ERROR-command:\n"
274	printf " >>> ${err_command[$i]}\n"
275	eval ${err_command[$i]}
276	done
277	if [[ -n $interpreted_config_file ]] then
278	rm -rf $interpreted_config_file
279	fi
280	if [[ $tmpcreate = true ]]
281	then
282	printf "\n *** Contents of \"$TEMPDIR\":\n"
283	ls -al; cd
284	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
285	fi
286	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
287	then
288	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
289	fi
290	printf "\n\n+++ MRUN killed \n\n"
291	elif [[ $locat != control_c ]]
292	then
293	printf "\n\n --> all actions finished\n\n"
294	printf " Bye, bye $usern !!\n\n"
295	fi' exit
296
297
298	# BEI TERMINAL-BREAK:
299	trap '[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
301	then
302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
303	fi
304	printf "\n+++ MRUN killed by \"^C\" \n\n"
305	locat=control_c
306	exit
307	' 2
308
309
310	# EVTL. NAMEN DES LOKALEN RECHNERS MIT UEBERGREIFENDEM NAMEN VERSEHEN
311	case $localhost_realname in
312	(atmos) mrun_path=/home/siggi/pub
313	localhost=lcide;;
314	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|irifi\|levanto\|maestro\|orkan\|ostria\|poniente\|quanero\|scirocco\|vorias) mrun_path=/home/raasch/pub
315	localhost=lcmuk;;
316	(caurus\|caver\|gharra\|samun\|twister\|viracao\|yalka) mrun_path=/home/raasch/pub/
317	localhost=hpmuk;;
318	(breg-en0\|berni-en0) mrun_path=/home/b/niksiraa/pub
319	localhost=ibmb; archive_system=tivoli;;
320	(cs*) mrun_path=/pf/b/b323011/pub
321	localhost=nech; archive_system=ut;;
322	(gate\|n-sx) mrun_path=/home/DSRC/NC/tatuyama/pub
323	PATH=$PATH:/usr/bin/nqsII:$mrun_path
324	localhost=neck;;
325	(ground.yonsei.ac.kr) mrun_path=/usr/users/raasch/pub
326	localhost=decalpha;;
327	(gfdl3.yonsei.ac.kr) mrun_path=/usr2/users/raasch/pub
328	localhost=decalpha;;
329	(gfdl5) mrun_path=/usr1/users/raasch/pub
330	localhost=ibmy;;
331	(gwdk081.gwdg.de\|gwdk082.gwdg.de\|gwdk083.gwdg.de) mrun_path=/usr/users/sraasch/pub
332	localhost=ibm;;
333	(hreg-en0\|hanni-en0) mrun_path=/home/h/niksiraa/pub
334	localhost=ibmh; archive_system=tivoli;;
335	(nobel*) mrun_path=/edun/z051nyg/pub
336	localhost=ibms;;
337	(sun1\|sun2) mrun_path=/home/nhbksira/pub/
338	localhost=unics;;
339	(tgg*) mrun_path=/home2/usr5/mkanda/pub
340	localhost=lctit;;
341	(*) printf "\n +++ Host \"$localhost_realname\" not admitted for mrun \n"
342	locat=localhost; exit;;
343	esac
344
345	[[ $localhost_realname = scirocco ]] && scirocco=true
346
347
348
349	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
350	# FUER FOLGEJOBS BENOETIGT WIRD
351	while getopts :a:AbBc:Cd:D:f:Fh:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX: option
352	do
353	case $option in
354	(a) afname=$OPTARG;;
355	(A) store_on_archive_system=false; mc="$mc -A";;
356	(b) do_batch=true; mc="$mc -b";;
357	(B) delete_temporary_catalog=false; mc="$mc -B";;
358	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
359	(C) continuation_run=true; mc="$mc -C";;
360	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
361	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
362	(f) filetransfer_protocol=$OPTARG; mc="$mc -f$OPTARG";;
363	(F) job_on_file="-D"; mc="$mc -F";;
364	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
365	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
366	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
367	(I) ignore_archive_error=true; mc="$mc -I";;
368	(k) keep_data_from_previous_run=true; mc="$mc -k";;
369	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
370	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
371	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
372	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
373	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
374	(O) use_openmp=true; mc="$mc -O";;
375	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
376	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
377	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
378	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
379	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
380	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
381	(S) read_from_config=false; mc="$mc -S";;
382	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
383	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
384	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
385	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
386	(v) silent=true; mc="$mc -v";;
387	(x) do_trace=true;set -x; mc="$mc -x";;
388	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
389	(\?) printf "\n +++ unknown option $OPTARG \n"
390	printf "\n --> type \"$0 ?\" for available options \n"
391	locat=parameter;exit;;
392	esac
393	done
394
395
396	# EVTL. POSITIONSPARAMETER EINLESEN
397	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
398	shift OPTIND-1
399
400
401	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
402	if [[ "$1" = "?" ]]
403	then
404	(printf "\n *** mrun can be called as follows:\n"
405	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
406	printf "\n Description of available options:\n"
407	printf "\n Option Description Default-Value"
408	printf "\n -a base name of input files equiv. -d"
409	printf "\n -A no archiving when using file-attribute fl"
410	printf "\n -b batch-job on local machine ---"
411	printf "\n -B do not delete temporary directory at end ---"
412	printf "\n -c configuration file .mrun.config"
413	printf "\n -d base name of files attached to program test"
414	printf "\n -D preprocessor(cpp)-directives \"\" "
415	printf "\n -f filetransfer protocol (ftp or scp) depending on -h"
416	printf "\n -F create remote job file only ---"
417	printf "\n -h execution host $localhost_realname"
418	printf "\n -i INPUT control list \"\" "
419	printf "\n -I archiving errors of previous batch-jobs"
420	printf "\n will be ignored"
421	printf "\n -k keep data from previous run"
422	printf "\n -K additional conditions for controling"
423	printf "\n usage of conditional code and"
424	printf "\n env-variables in configuration file \"\" "
425	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
426	printf "\n -M Makefile name Makefile"
427	printf "\n -n node usage (shared/not_shared) depending on -h"
428	printf "\n -o OUTPUT control list \"\" "
429	printf "\n -O use OpenMP ---"
430	printf "\n -p software package list \"\" "
431	printf "\n -q queue \"$queue\" "
432	printf "\n -r run control list (combines -i -o) \"\" "
433	printf "\n -s filenames of routines to be compiled \"\" "
434	printf "\n must end with .f, .f90, .F, or .c !"
435	printf "\n use \"..\" for more than one file and wildcards"
436	printf "\n -s TEST compiles all files with w-permit"
437	printf "\n -S config file interpreted by shellscript ---"
438	printf "\n -t allowed cpu-time in seconds (batch) 0"
439	printf "\n -T tasks per node depending on -h"
440	printf "\n -u username on remote machine \"\" "
441	printf "\n -v no prompt for confirmation ---"
442	printf "\n -x tracing of mrun for debug purposes ---"
443	printf "\n -X # of processors (on parallel machines) 1"
444	printf "\n "
445	printf "\n Possible values of positional parameter <modus>:"
446	printf "\n \"?\" - this outline \n\n") \| more
447	exit
448	elif [[ "$1" != "" ]]
449	then
450	printf "\n +++ positional parameter $1 unknown \n"
451	locat=parameter; exit
452	fi
453
454
455
456	# KURZE STARTMELDUNG
457	printf "\n*** $version "
458	printf "\n will be executed. Please wait ..."
459
460
461	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
462	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
463	[[ "$afname" = "" ]] && afname=$fname
464
465
466	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
467	if [[ "$run_mode" != "" ]]
468	then
469	input_list="$input_list $run_mode"
470	output_list="$output_list $run_mode"
471	fi
472
473
474	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
475	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
476	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
477	# STARTET)
478	if [[ "$fromhost" = "" ]]
479	then
480	fromhost=$localhost
481	fi
482
483
484	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
485	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
486	then
487	source_list=TEST
488	local_compile=true
489	host=$localhost
490	fi
491
492
493	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
494	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
495	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
496	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
497	if [[ -n $host && "$host" != $localhost ]]
498	then
499	do_batch=true
500	do_remote=true
501	case $host in
502	(hpmuk\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
503	(*) printf "\n"
504	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
505	printf "\n or NQS not available on execution host!"
506	locat=nqs; (( iec = 0 )); exit;;
507	esac
508	else
509	host=$localhost
510	fi
511
512
513	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
514	if [[ -n $additional_conditions ]]
515	then
516	echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
517	# cond1=`echo $additional_conditions \| cut -d" " -f1`
518	# cond2=`echo $additional_conditions \| cut -d" " -s -f2`
519	# dummy=`echo $additional_conditions \| cut -d" " -s -f3`
520	if [[ -n $dummy ]]
521	then
522	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
523	locat=options; exit
524	fi
525	fi
526
527
528	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
529	# ARCHIVIERUNG FEHLGESCHLAGEN IST
530	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
531	then
532	if [[ $ignore_archive_error = false ]]
533	then
534	printf "\n +++ data archiving of previous run failed"
535	printf "\n see directory \~/job_queue on remote machine"
536	locat=archive; exit
537	else
538	printf "\n +++ warning: data archiving in a previous run failed"
539	printf "\n MRUN continues, trying to get backup copy"
540	fi
541	fi
542
543
544	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
545	if [[ ! -f $config_file ]]
546	then
547	printf "\n\n +++ configuration file: "
548	printf "\n $config_file"
549	printf "\n does not exist"
550	locat=connect; exit
551	fi
552
553
554
555	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
556	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
557	if [[ "$read_from_config" = false ]]
558	then
559
560	[[ $silent = false ]] && printf "\n Reading the configuration file... "
561	while read zeile
562	do
563	[[ $silent = false ]] && printf "."
564
565
566	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
567	# ERSETZEN
568	eval zeile=\"$zeile\"
569
570
571	# INTERPRETATION DER ZEILE
572	if [[ "$(echo $zeile \| cut -c1)" = "#" ]]
573	then
574
575	# ZEILE IST KOMMENTARZEILE
576	true
577
578	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
579	then
580
581	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
582	zeile=$(echo $zeile \| cut -c2-)
583	echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
584	# var=`echo $zeile \| cut -d" " -f1`
585	# value=`echo $zeile \| cut -d" " -s -f2`
586	# for_host=`echo $zeile \| cut -d" " -s -f3`
587	# for_cond1=`echo $zeile \| cut -d" " -s -f4`
588	# for_cond2=`echo $zeile \| cut -d" " -s -f5`
589
590	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
591	then
592
593	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
594	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
595	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
596
597
598	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
599	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
600	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
601	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
602	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
603	# KONFIGURATIONSDATEI
604	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
605	then
606	eval $var=\$value
607
608	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
609	if [[ $do_trace = true ]]
610	then
611	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
612	fi
613	fi
614
615	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
616	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
617	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
618	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
619	if [[ $var = host ]]
620	then
621	if [[ -n $host && "$host" != $localhost ]]
622	then
623	do_batch=true
624	do_remote=true
625	case $host in
626	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
627	(*) printf "\n +++ no queueing system available on execution host \"$host\""
628	locat=nqs; exit;;
629	esac
630	else
631	host=$localhost
632	fi
633	fi
634
635	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
636	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
637	# DEN PROGRAMMEN BENOETIGT WERDEN
638	export $var
639	fi
640
641
642
643
644	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
645	then
646
647	# ZEILE DEFINIERT ERROR-KOMMANDO
648	(( iec = iec + 1 ))
649	zeile=$(echo $zeile \| cut -c4-)
650	err_command[$iec]="$zeile"
651
652	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
653	then
654
655	# ZEILE DEFINIERT INPUT-KOMMANDO
656	(( iic = iic + 1 ))
657	zeile=$(echo $zeile \| cut -c4-)
658	in_command[$iic]="$zeile"
659
660	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
661	then
662
663	# ZEILE DEFINIERT OUTPUT-KOMMANDO
664	(( ioc = ioc + 1 ))
665	zeile=$(echo $zeile \| cut -c4-)
666	out_command[$ioc]="$zeile"
667
668	else
669
670	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
671	# s2a: in/out - Feld
672	# s2b: loc - Feld (optional)
673	# s2c: tr/ar - Feld (optional)
674	echo $zeile \| cut -d" " -f1-2 \| read s1 s2
675	# s1=`echo $zeile \| cut -d" " -f1`
676	# s2=`echo $zeile \| cut -d" " -s -f2`
677	s2a=$(echo $s2 \| cut -d":" -f1)
678	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
679	then
680	s2b=""
681	s2c=""
682	else
683	echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
684	# s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
685	# s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
686	fi
687	echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
688	# s3=`echo $zeile \| cut -d" " -f3`
689	# s4=`echo $zeile \| cut -d" " -s -f4`
690	# s5=`echo $zeile \| cut -d" " -s -f5`
691	# s6=`echo $zeile \| cut -d" " -s -f6`
692
693
694	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
695	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
696	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
697	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
698	# HANDEN SEIN MUSS (D.H. s2b = loc)
699	IFSALT="$IFS"; IFS="$IFS:"
700	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
701	then
702	found=false
703	for actual in $input_list
704	do
705	for formal in $s3
706	do
707	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
708	done
709	done
710	if [[ $found = true ]]
711	then
712	(( iin = iin + 1 ))
713	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
714	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
715	extin[$iin]=$s6
716	fi
717	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
718	then
719	found=false
720	for actual in $output_list
721	do
722	for formal in $s3
723	do
724	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
725	done
726	done
727	if [[ $found = true ]]
728	then
729	(( iout = iout + 1 ))
730	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
731	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
732	fi
733	elif [[ "$s2a" != in && "$s2a" != out ]]
734	then
735	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
736	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
737	locat=connect; exit
738	fi
739	IFS="$IFSALT"
740	fi
741	done < $config_file
742
743	else
744
745
746	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
747	[[ $silent = false ]] && printf "..."
748	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
749	export interpreted_config_file=.icf.$RANDOM
750
751	case $localhost_realname in
752	(caurus\|twister) interpret_config.hp;;
753	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|maestro\|orkan\|ostria) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel_ifc/8.1/lib/; interpret_config_9.x;;
754	(levanto\|vorias) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel/ifort/9.1.037/lib/; interpret_config_9.x_levanto;;
755	(quanero) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel_fc_80/lib; interpret_config_9.x;;
756	(*) interpret_config.x;;
757	esac
758
759
760	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
761	chmod u+x $interpreted_config_file
762	export PATH=$PATH:.
763	. $interpreted_config_file
764	rm $interpreted_config_file
765
766	fi
767
768
769	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
770	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
771	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
772	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
773	if [[ "$SOURCES_COMPLETE" = "" ]]
774	then
775
776	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
777	# VEREINBART WURDE
778	source_path=""
779	line=""
780	grep "%source_path" $config_file > tmp_mrun
781	while read line
782	do
783	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
784	then
785	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
786	then
787	global_source_path=`echo $line \| cut -d" " -f2`
788	fi
789	fi
790	done < tmp_mrun
791
792	line=""
793	found=false
794	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
795	while read line
796	do
797	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
798	then
799	if [[ $found = true ]]
800	then
801	printf "\n\n +++ more than one source path found in configuration file"
802	printf "\n for local host \"$localhost\" "
803	locat=source_path; exit
804	fi
805	source_path=`echo $line \| cut -d" " -f2`
806	found=true
807	fi
808	done < tmp_mrun
809	rm tmp_mrun
810
811	if [[ "$source_path" = "" ]]
812	then
813	if [[ "$global_source_path" != "" ]]
814	then
815	source_path=$global_source_path
816	else
817	printf "\n\n +++ no source path found in configuration file"
818	printf "\n for local host \"$localhost\" "
819	locat=source_path; exit
820	fi
821	fi
822	eval source_path=$source_path
823
824	if [[ ! -d $source_path ]]
825	then
826	printf "\n\n +++ source path \"$source_path\" on local host"
827	printf "\n \"$localhost\" does not exist"
828	locat=source_path; exit
829	fi
830
831	fi
832
833
834
835	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
836	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
837	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
838	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
839	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
840	if [[ -n $host && "$host" != $localhost ]]
841	then
842	do_batch=true
843	do_remote=true
844	case $host in
845	(hpmuk\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
846	(*) printf "\n"
847	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
848	printf "\n or no queueing system available on execution host!"
849	locat=nqs; (( iec = 0 )); exit;;
850	esac
851	else
852	host=$localhost
853	fi
854
855
856	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
857	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
858	then
859
860	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
861	if [[ ! -n $numprocs ]]
862	then
863	printf "\n"
864	printf "\n +++ option \"-K parallel\" requires additional specification"
865	printf "\n of the number of processors to be used by"
866	printf "\n mrun-option \"-X\" or by environment-variable"
867	printf "\n \"numprocs\" in the configuration file"
868	locat=numprocs; (( iec = 0 )); exit
869	fi
870
871	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
872	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
873	# GESAMTPROZESSORANZAHL IST
874	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
875	then
876	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
877	(( ival = $tasks_per_node ))
878	(( pes = numprocs ))
879	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
880	# then
881	# (( pes = pes - 1 ))
882	# fi
883	(( ii = pes / ival ))
884	if (( pes - ii * ival > 0 ))
885	then
886	printf "\n"
887	printf "\n +++ tasks per node (option \"-T\") must be an integral"
888	printf "\n divisor of the total number of processors (option \"-X\")"
889	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
890	locat=tasks_per_node; (( iec = 0 )); exit
891	fi
892	fi
893
894	# IBMY HAT NUR EINEN KNOTEN
895	if [[ $host = ibmy ]]
896	then
897	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
898	then
899	printf "\n"
900	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
901	printf "\n total number of processors (option \"-X\")"
902	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
903	locat=tasks_per_node; (( iec = 0 )); exit
904	fi
905	fi
906
907	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
908	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
909	if [[ $use_openmp = true ]]
910	then
911	threads_per_task=$tasks_per_node
912	tasks_per_node=1
913	fi
914	OOPT="-O $threads_per_task"
915	TOPT="-T $tasks_per_node"
916
917	# GESAMTZAHL DER KNOTEN BESTIMMEN
918	if [[ "$tasks_per_node" != "" ]]
919	then
920	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
921	fi
922
923	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
924	# SETZEN
925	if [[ $node_usage = default ]]
926	then
927	if [[ $host = ibms ]]
928	then
929	node_usage=shared
930	else
931	node_usage=not_shared
932	fi
933	fi
934	if [[ $node_usage != shared && $node_usage != not_shared ]]
935	then
936	printf "\n"
937	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
938	printf "\n \"shared\" or \"not_shared\""
939	locat=tasks_per_node; (( iec = 0 )); exit
940	fi
941
942	fi
943
944	# PRUEFEN, OB HOSTFILE EXISTIERT
945	if [[ -n $hostfile ]]
946	then
947	if [[ ! -f $hostfile ]]
948	then
949	printf "\n"
950	printf "\n +++ hostfile \"$hostfile\" does not exist"
951	locat=hostfile; exit
952	fi
953	fi
954
955	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
956	if [[ $host = ibmy && $do_remote = false ]]
957	then
958	if [[ ! -f $HOME/.rhosts ]]
959	then
960	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
961	printf "\n\n *** file:"
962	printf "\n $HOME/.rhosts"
963	printf "\n was created\n"
964	fi
965	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
966	then
967	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
968	printf "\n\n *** file:"
969	printf "\n $HOME/.rhosts"
970	printf "\n was extended by the name of the current host\n"
971	fi
972	fi
973
974	# DEFAULT-DATEITRANSFER-PROTOKOLL FESTLEGEN
975	if [[ "$filetransfer_protocol" = "" ]]
976	then
977	case $host in
978	(nech\|neck\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit) filetransfer_protocol=scp;;
979	(*) filetransfer_protocol=ftp;;
980	esac
981	fi
982
983	# PRUEFEN, OB ZULAESSIGES DATEITRANSFER-PROTOKOLL GEWAEHLT WURDE
984	if [[ "$filetransfer_protocol" != ftp && "$filetransfer_protocol" != scp ]]
985	then
986	printf "\n"
987	printf "\n +++ illegal value \"$filetransfer_protocol\" for Option -f"
988	printf "\n only \"ftp\" or \"scp\" are allowed"
989	locat=options; exit
990	fi
991
992
993	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
994	if [[ $queue = none ]]
995	then
996	case $host in
997	(hpmuk) queue=hpmuk;;
998	(ibmb) if [[ $node_usage = shared ]]
999	then
1000	queue=cshare
1001	else
1002	queue=csolo
1003	fi;;
1004	(ibmh) if [[ $node_usage = shared ]]
1005	then
1006	queue=cshare
1007	else
1008	queue=csolo
1009	fi;;
1010	(ibmy) queue=parallel;;
1011	(lctit) queue=default;;
1012	(nech) queue=none;;
1013	(neck) queue=P;;
1014	(unics) queue=unics;;
1015	esac
1016	fi
1017
1018
1019	# EVTL. NETCDF-UNTERSTUETZUNG SETZEN
1020	case $host in
1021	(decalpha) netcdf_support=true
1022	netcdf_path=/usr/local/netcdf-3.5.1;;
1023	(ibmb\|ibmh) netcdf_support=true
1024	netcdf_path=/aws/dataformats/netcdf-3.6.0-p1/64-32;;
1025	(ibms) netcdf_support=true
1026	netcdf_path=/applic/lib/NETCDF64;;
1027	(ibmy) netcdf_support=true
1028	netcdf_path=/usr1/users/raasch/pub/netcdf-3.6.0-p1;;
1029	(lcmuk) netcdf_support=true
1030	if [[ $scirocco = true ]]
1031	then
1032	netcdf_path=/opt/netcdf/3.6.2-beta4
1033	else
1034	netcdf_path=/muksoft/packages/netcdf/linux
1035	fi;;
1036	(lctit) netcdf_support=true
1037	netcdf_path=/home2/usr5/mkanda/netcdf-3.6.1;;
1038	(nech) netcdf_support=true
1039	netcdf_path=/pool/SX-6/netcdf/netcdf-3.6.0-p1;;
1040	(neck) netcdf_support=true
1041	netcdf_path=/home/DSRC/NC/tatuyama/pub/netcdf-3.6.0-p1;;
1042	esac
1043
1044
1045	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1046	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1047	# ERMITTELN
1048	(( i = 0 ))
1049	while (( i < iin ))
1050	do
1051	(( i = i + 1 ))
1052	(( maxcycle = 0 ))
1053
1054	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1055	if [[ "${actionin[$i]}" = di ]]
1056	then
1057	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1058	# REM-MASCHINE AUSWERTEN
1059	eval filename=${pathin[$i]}/${endin[$i]}
1060	else
1061	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1062	# REM-MASCHINE AUSWERTEN
1063	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1064	fi
1065
1066	# PRUEFEN AUF VORHANDENSEIN
1067	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1068	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1069	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1070	then
1071	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1072	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1073	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1074	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1075	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1076	if [[ "${transin[$i]}" != "locopt" ]]
1077	then
1078	printf "\n\n +++ INPUT-file: "
1079	if [[ "${extin[$i]}" = "" ]]
1080	then
1081	printf "\n $filename"
1082	else
1083	printf "\n $filename.${extin[$i]}"
1084	fi
1085	printf "\n does not exist\n"
1086	locat=input; exit
1087	else
1088	transin[$i]="unavailable"
1089	fi
1090	else
1091
1092	# ZYKLUSNUMMER FESTSTELLEN
1093	ls -1 -d $filename > filelist 2>/dev/null
1094	ls -1 -d $filename.* >> filelist 2>/dev/null
1095	while read zeile
1096	do
1097	cycle=$(print $zeile \| cut -f2 -d".")
1098	if [[ "$cycle" = "$zeile" ]]
1099	then
1100	(( icycle = 0 ))
1101	elif [[ "$cycle" = "${extin[$i]}" ]]
1102	then
1103	(( icycle = 0 ))
1104	else
1105	(( icycle = $cycle ))
1106	fi
1107	if (( icycle > maxcycle ))
1108	then
1109	(( maxcycle = icycle ))
1110	file_to_be_used=$zeile
1111	fi
1112	done <filelist
1113	rm filelist
1114
1115	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1116	if (( maxcycle > 0 ))
1117	then
1118	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1119	then
1120	filename=${filename}.$maxcycle.${extin[$i]}
1121	else
1122	filename=${filename}.$maxcycle
1123	fi
1124	else
1125	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1126	then
1127	filename=${filename}.${extin[$i]}
1128	fi
1129	fi
1130
1131	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1132	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1133	absnamein[$i]=$filename
1134	if (( maxcycle > 0 ))
1135	then
1136	if [[ "${actionin[$i]}" = di ]]
1137	then
1138	frelin[$i]=${endin[$i]}.$maxcycle
1139	else
1140	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1141	fi
1142	else
1143	if [[ "${actionin[$i]}" = di ]]
1144	then
1145	frelin[$i]=${endin[$i]}
1146	else
1147	frelin[$i]=${afname}${endin[$i]}
1148	fi
1149	fi
1150
1151	fi
1152	done
1153
1154
1155	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1156	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1157	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1158	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1159	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1160	(( i = 0 ))
1161	while (( i < iout ))
1162	do
1163	(( i = i + 1 ))
1164	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1165	then
1166	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1167	then
1168	actionout[$i]=""
1169	elif [[ "${actionout[$i]}" = tra ]]
1170	then
1171	actionout[$i]=a
1172	fi
1173	(( maxcycle = 0 ))
1174	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1175	eval catalogname=${pathout[$i]}
1176	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1177	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1178	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1179	then
1180
1181	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1182	if cat /dev/null > $filename
1183	then
1184	rm $filename
1185	else
1186
1187	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1188	if [[ ! -d $catalogname ]]
1189	then
1190	if mkdir -p $catalogname
1191	then
1192	printf "\n\n *** directory:"
1193	printf "\n $catalogname"
1194	printf "\n was created\n"
1195	else
1196	printf "\n\n +++ OUTPUT-file:"
1197	printf "\n $filename"
1198	printf "\n cannot be created, because directory does not exist"
1199	printf "\n and cannot be created either"
1200	printf "\n"
1201	locat=output ; exit
1202	fi 2>/dev/null
1203	else
1204	printf "\n\n +++ OUTPUT-file:"
1205	printf "\n $filename"
1206	printf "\n cannot be created, although directory exists"
1207	printf "\n"
1208	locat=output ; exit
1209	fi
1210	fi 2>/dev/null
1211	else
1212
1213	# ZYKLUSNUMMER FESTSTELLEN
1214	ls -1 -d $filename > filelist 2>/dev/null
1215	ls -1 -d $filename.* >> filelist 2>/dev/null
1216	while read zeile
1217	do
1218	cycle=$(print $zeile \| cut -f2 -d".")
1219	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1220	then
1221	(( icycle = 1 ))
1222	else
1223	(( icycle = $cycle + 1 ))
1224	fi
1225	if (( icycle > maxcycle ))
1226	then
1227	(( maxcycle = icycle ))
1228	fi
1229	done <filelist
1230	rm filelist
1231	fi
1232
1233	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1234	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1235	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1236	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1237	if [[ "${actionout[$i]}" != a ]]
1238	then
1239	if (( maxcycle > 0 ))
1240	then
1241	filename=${filename}.$maxcycle
1242	if cat /dev/null > $filename
1243	then
1244	rm $filename
1245	else
1246	printf "\n +++ OUTPUT-file:"
1247	printf "\n $filename"
1248	printf "\n cannot be created"
1249	locat=output ; exit
1250	fi
1251	fi
1252	else
1253	(( maxcycle = maxcycle - 1 ))
1254	if (( maxcycle > 0 ))
1255	then
1256	filename=${filename}.$maxcycle
1257	fi
1258	fi
1259
1260	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1261	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1262	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1263	pathout[$i]=$filename
1264	if (( maxcycle > 0 ))
1265	then
1266	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1267	else
1268	frelout[$i]=${fname}${endout[$i]}
1269	fi
1270
1271	fi
1272	done
1273
1274
1275	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1276	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1277	# UEBERSETZT ZU WERDEN)
1278	if [[ "$mainprog" = "" && "$executable" = "" ]]
1279	then
1280	printf "\n +++ neither main program nor executable defined"
1281	locat=source; exit
1282	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1283	then
1284	printf "\n +++ main program as well as executable defined"
1285	locat=source; exit
1286	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1287	then
1288	do_compile=false
1289	fi
1290
1291
1292	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1293	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1294	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1295	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1296	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1297	then
1298
1299	[[ "$source_list" = CF ]] && source_list=CHANGED_FILES
1300
1301	if [[ "$source_list" = CHANGED_FILES \|\| $continuation_run != true ]]
1302	then
1303	rm -rf SOURCES_FOR_RUN_$fname
1304	mkdir SOURCES_FOR_RUN_$fname
1305	fi
1306
1307
1308	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1309	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1310	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1311	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1312	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1313	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1314	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1315	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1316	# GESAMMELT
1317	if [[ "$source_list" = CHANGED_FILES ]]
1318	then
1319
1320	source_list=""
1321
1322	# ZUERST DAS DURCH DIE KONFIGURATIONSDATEI FESTGELEGTE
1323	# QUELLTEXTVERZEICHNIS DURCHSUCHEN
1324	cd $source_path
1325
1326
1327	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1328	Names=$(ls -1 *.f90 2>&1)
1329	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1330	Names=$(ls -1 *.F90 2>&1)
1331	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1332	Names=$(ls -1 *.F 2>&1)
1333	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1334	Names=$(ls -1 *.f 2>&1)
1335	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1336	Names=$(ls -1 *.c 2>&1)
1337	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1338
1339
1340	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1341	for dateiname in $Filenames
1342	do
1343	if [[ -w $dateiname ]]
1344	then
1345	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1346	then
1347	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1348	source_list=$source_list"$dateiname "
1349	fi
1350	fi
1351	done
1352
1353	cd - > /dev/null
1354
1355
1356	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1357	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1358	# VORHANDEN
1359	elif [[ "$source_list" != "" && $continuation_run != true ]]
1360	then
1361
1362	cd $source_path
1363
1364	for filename in $source_list
1365	do
1366
1367	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1368	if [[ $(print $filename \| grep -c "/") != 0 ]]
1369	then
1370	printf "\n +++ source code file: $filename"
1371	printf "\n must not contain (\"/\") "
1372	locat=source; exit
1373	fi
1374
1375	if [[ ! -f $filename ]]
1376	then
1377	printf "\n +++ source code file: $filename"
1378	printf "\n does not exist"
1379	locat=source; exit
1380	else
1381	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1382	fi
1383
1384	done
1385
1386	cd - > /dev/null
1387
1388	fi
1389
1390
1391	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1392	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1393	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1394	if [[ $continuation_run != true ]]
1395	then
1396
1397	if [[ ! -f "$source_path/$mainprog" ]]
1398	then
1399	printf "\n\n +++ main program: $mainprog"
1400	printf "\n does not exist in source directory"
1401	printf "\n \"$source_path\"\n"
1402	locat=source; exit
1403	else
1404	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1405	then
1406	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1407	source_list=${mainprog}" $source_list"
1408	fi
1409	fi
1410	fi
1411
1412
1413	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1414	if [[ $continuation_run != true && "$add_source_path" != "" ]]
1415	then
1416
1417	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1418	if [[ ! -d $add_source_path ]]
1419	then
1420	printf "\n\n +++ WARNING: additional source code directory"
1421	printf "\n \"$add_source_path\" "
1422	printf "\n does not exist or is not a directory."
1423	printf "\n No source code will be used from this directory!\n"
1424	add_source_path=""
1425	sleep 3
1426	else
1427
1428	cd $add_source_path
1429
1430	Names=$(ls -1 *.f90 2>&1)
1431	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1432	Names=$(ls -1 *.F90 2>&1)
1433	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1434	Names=$(ls -1 *.F 2>&1)
1435	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1436	Names=$(ls -1 *.f 2>&1)
1437	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1438	Names=$(ls -1 *.c 2>&1)
1439	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1440
1441	cd - > /dev/null
1442	cd SOURCES_FOR_RUN_$fname
1443
1444	for dateiname in $AddFilenames
1445	do
1446	if [[ -f $dateiname ]]
1447	then
1448	printf "\n +++ source code file \"$dateiname\" found in additional"
1449	printf "\n source code directory \"$add_source_path\" "
1450	printf "\n as well as in directory \"$source_path\"."
1451	locat=source; exit
1452	fi
1453
1454	cp $add_source_path/$dateiname .
1455	source_list="$source_list $dateiname"
1456
1457	# Default User-Interface von der Liste entfernen, falls Datei
1458	# ein User-Interface enthaelt
1459	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1460	then
1461	if [[ -f user_interface.f90 ]]
1462	then
1463	rm -rf user_interface.f90
1464	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1465	printf "\n\n *** \"user_interface.f90\" removed from the files to be translated"
1466	printf "\n since a user-interface is found in file"
1467	printf "\n \"$add_source_path/$dateiname\" \n"
1468	sleep 3
1469	else
1470	printf "\n\n *** user-interface file \"$dateiname\" "
1471	printf "\n added to the files to be translated \n"
1472	sleep 3
1473	fi
1474	fi
1475	done
1476
1477	cd - > /dev/null
1478	fi
1479	fi
1480
1481
1482	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1483	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1484	if [[ $continuation_run != true && -n $package_list ]]
1485	then
1486
1487	cd $source_path
1488
1489	for package in $package_list
1490	do
1491
1492	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1493
1494	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1495	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1496	# LIEFERT
1497	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1498
1499
1500	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1501	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1502	for source_list_name in $package_source_list
1503	do
1504	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1505	then
1506
1507	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1508	ending=`echo $source_list_name \| cut -f2 -d.`
1509	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1510	then
1511	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1512	source_list="$source_list $source_list_name"
1513	fi
1514	fi
1515	done
1516	done
1517
1518	cd - > /dev/null
1519	fi
1520
1521
1522	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1523	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1524	if [[ "$use_makefile" = true && "$continuation_run" != true ]]
1525	then
1526	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1527	if [[ ! -f $makefile ]]
1528	then
1529	printf "\n +++ file \"$makefile\" does not exist"
1530	printf "\n provide this file or set \"use_makefile=false\" in configuration file\n"
1531	locat=make; exit
1532	else
1533	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1534	fi
1535	fi
1536
1537	fi # do_compile=true
1538
1539
1540	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1541	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1542	if [[ $do_compile = true ]]
1543	then
1544
1545	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1546	# ZUSAMMENSETZEN
1547	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1548	then
1549	PPOPTS=-Dibm=ibm
1550	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1551	then
1552	PPOPTS=-Dnec
1553	else
1554	PPOPTS=-D$localhost
1555	fi
1556	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1557	then
1558	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1=$cond1"
1559	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2=$cond2"
1560	if [[ $netcdf_support = true ]]
1561	then
1562	PPOPTS="$PPOPTS -Dnetcdf=netcdf"
1563	[[ $localhost != ibms ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit=netcdf_64bit"
1564	fi
1565	if [[ $localhost = ibmy ]]
1566	then
1567	PPOPTS="$PPOPTS -Dibmy_special=ibmy_special"
1568	fi
1569	else
1570	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1"
1571	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2"
1572	if [[ $netcdf_support = true ]]
1573	then
1574	PPOPTS="$PPOPTS -Dnetcdf"
1575	[[ $localhost != decalpha && $localhost != lctit ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit"
1576	fi
1577	fi
1578	if [[ -n $package_list ]]
1579	then
1580	for package in $package_list
1581	do
1582	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1583	then
1584	if [[ $package != "dvrp_graphics+1PE" ]]
1585	then
1586	PPOPTS="$PPOPTS -D$package=$package"
1587	else
1588	PPOPTS="$PPOPTS -Ddvrp_graphics"
1589	export use_seperate_pe_for_dvrp_output=true
1590	fi
1591	else
1592	if [[ $package != "dvrp_graphics+1PE" ]]
1593	then
1594	PPOPTS="$PPOPTS -D$package"
1595	else
1596	PPOPTS="$PPOPTS -Ddvrp_graphics"
1597	export use_seperate_pe_for_dvrp_output=true
1598	fi
1599	fi
1600	done
1601	fi
1602	if [[ -n $cpp_opts ]]
1603	then
1604	for popts in $cpp_opts
1605	do
1606	PPOPTS="$PPOPTS -D$popts"
1607	done
1608	fi
1609
1610	# -D ARGUMENTEN EINEN DOPPELTEN UNTERSTRICH VORANSTELLEN
1611	PPOPTS=`echo " $PPOPTS" \| sed 's/ -D/ -D__/g'`
1612
1613	# OPTION ZUM EINSCHALTEN DES PRAEPROZESSORS HINZUFUEGEN
1614	if [[ $host = decalpha ]]
1615	then
1616	C_PPOPTS="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION $PPOPTS"
1617	elif [[ $(echo $host \| cut -c1-3) = ibm ]]
1618	then
1619	# blanks in PPOPTS muessen durch "," ersetzt werden
1620	PPOPTS=`echo $PPOPTS \| sed 's/ -/,-/g'`
1621	C_PPOPTS="-qsuffix=cpp=f90 -WF,-DMPI_REAL=MPI_DOUBLE_PRECISION,$PPOPTS"
1622	elif [[ $host = lcmuk ]]
1623	then
1624	C_PPOPTS="$PPOPTS -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1625	elif [[ $host = lctit ]]
1626	then
1627	C_PPOPTS="$PPOPTS -Mpreprocess -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1628	elif [[ $(echo $host \| cut -c1-3) = nec ]]
1629	then
1630	C_PPOPTS="-Ep -DMPI_REAL=MPI_REAL8 -DMPI_2REAL=MPI_2REAL8 -DSCFFT=dzfft -DCSFFT=zdfft $PPOPTS"
1631	else
1632	C_PPOPTS="$PPOPTS"
1633	fi
1634
1635	else
1636
1637
1638	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1639	if [[ $do_remote = false ]]
1640	then
1641	if [[ ! -f $executable ]]
1642	then
1643	printf "\n +++ executable file: $executable"
1644	printf "\n does not exist"
1645	locat=executable; exit
1646	fi
1647	fi
1648	fi
1649
1650
1651	# JOBMODUS FESTSTELLEN
1652	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1653	then
1654	jobmo=BATCH
1655	else
1656	jobmo=INTERACTIVE
1657	fi
1658
1659
1660	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1661	# DURCH BENUTZER ANDERWEITIG VEREINBART
1662	if [[ "$compiler_name" = "" ]]
1663	then
1664	case $localhost in
1665	(hpmuk\|unics) compiler_name=f77;;
1666	(lcmuk) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1667	then
1668	compiler_name=mpif90
1669	else
1670	compiler_name=ifc
1671	fi;;
1672	(lctit) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1673	then
1674	compiler_name=mpif90
1675	echo ">>> compiler=mpif90"
1676	else
1677	compiler_name=pgf95
1678	echo ">>> compiler=pgf95"
1679	fi;;
1680	(nech) compiler_name=sxmpif90;;
1681	(decalpha) compiler_name=f95;;
1682	(ibm\|ibmb\|ibmh\|ibms\|ibmy) compiler_name=mpxlf95_r;;
1683	(*) printf "\n +++ unknown host name: $localhost \n";
1684	locat=localhost; exit;;
1685	esac
1686	fi
1687
1688
1689	# COMPILER AUF NECK UEBERSCHREIBEN
1690	[[ $localhost = neck ]] && compiler_name=mpif90
1691
1692
1693
1694	# PRAEPROZESSOR-PFAD BESTIMMEN
1695	case $localhost in
1696	(decalpha\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|unics) praeproc=cpp;;
1697	(hpmuk) praeproc=/usr/ccs/lbin/cpp;;
1698	esac
1699
1700
1701	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1702	kennung=$RANDOM
1703	if [[ "$tmp_user_catalog" = "" ]]
1704	then
1705	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1706	then
1707	tmp_user_catalog=$TMPDIR
1708	elif [[ $localhost = nech ]]
1709	then
1710	tmp_user_catalog=$WRKSHR
1711	else
1712	tmp_user_catalog=/tmp
1713	fi
1714	fi
1715	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1716
1717
1718	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1719	# BESTIMMEN
1720	if [[ "$tmp_data_catalog" = "" ]]
1721	then
1722	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1723	then
1724	tmp_data_catalog=$WORK/mrun_restart_data
1725	elif [[ $localhost = nech ]]
1726	then
1727	tmp_data_catalog=$WRKSHR/mrun_restart_data
1728	else
1729	tmp_data_catalog=/tmp/mrun_restart_data
1730	fi
1731	fi
1732
1733
1734	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1735	# ERSETZEN
1736	if [[ $do_remote = false && $do_compile = true ]]
1737	then
1738	eval fopts=\"$fopts\"
1739	eval lopts=\"$lopts\"
1740	fi
1741
1742
1743
1744	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1745	FOPTS="$fopts"
1746	LOPTS="$lopts"
1747	ROPTS="$ropts"
1748	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit ) && -n $numprocs ]]
1749	then
1750	XOPT="-X $numprocs"
1751	fi
1752
1753
1754	# BEI VERWENDUNG VON DVRP-SOFTWARE MUSS ENTSPECHENDE GRAFIK-BIBLIOTHEK
1755	# MIT EINGEBUNDEN WERDEN
1756	if [[ -n $package_list ]]
1757	then
1758	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1759	then
1760
1761	# DVRP-GRAFIK GIBT ES NUR AUF DER IBM AM HLRN, AUF NECH UND
1762	# DEM NOTEBOOK SCIROCCO
1763	if [[ $host != ibmh && $host != nech && $host != lcmuk && "$local_compile" != true ]]
1764	then
1765	printf "\n"
1766	printf "\n +++ option -p with package \"dvrp_graphics\" only allowed on nech and ibmh"
1767	locat=parameter; exit
1768	fi
1769	if [[ $host = ibmh ]]
1770	then
1771	if [[ $cond1 = debug \|\| $cond2 = debug ]]
1772	then
1773	FOPTS="-I/home/h/hzazchmi/lib/debug $FOPTS"
1774	LOPTS="$LOPTS -L/home/h/hzazchmi/lib/debug -lDVRP2 -lftp"
1775	else
1776	FOPTS="-I/home/h/nikevita/lib_stable/optimize $FOPTS"
1777	LOPTS="$LOPTS -L/home/h/nikevita/lib_stable/optimize -lDVRP2 -lftp"
1778	fi
1779	elif [[ $host = nech ]]
1780	then
1781	FOPTS="-I/import/ds9b/ipf2/b/b323013/lib/optimize $FOPTS"
1782	LOPTS="$LOPTS -L/import/ds9b/ipf2/b/b323013/lib/optimize -lDVRP2 -lftp"
1783	elif [[ $host = lcmuk ]]
1784	then
1785	FOPTS="-I/usr/local/lib/dvrp/optimize $FOPTS"
1786	LOPTS="$LOPTS -L/usr/local/lib/dvrp/optimize -lDVRP2 -lftp"
1787	fi
1788	fi
1789	fi
1790
1791
1792	# EVTL. EINBINDEN DER NETCDF-BIBLIOTHEK
1793	if [[ $netcdf_support = true ]]
1794	then
1795	case $host in
1796	(decalpha) FOPTS="-I${netcdf_path}/include $FOPTS"
1797	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1798	(ibmb\|ibmh) FOPTS="-I ${netcdf_path}/include-64 $FOPTS"
1799	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1800	(ibms) FOPTS="-I /applic/netcdf64/src/f90 $FOPTS"
1801	LOPTS="$LOPTS -L${netcdf_path} -lnetcdf";;
1802	(ibmy) FOPTS="-I ${netcdf_path}/include $FOPTS"
1803	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1804	(lcmuk\|nech\|neck) FOPTS="-I ${netcdf_path}/include $FOPTS"
1805	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1806	(lctit) FOPTS="-I ${netcdf_path}/src/f90 $FOPTS"
1807	LOPTS="$LOPTS -L${netcdf_path}/src/libsrc -lnetcdf";;
1808
1809	esac
1810	fi
1811
1812	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1813	# GRAMM BENOETIGT
1814	done=false
1815	while [[ $done = false ]]
1816	do
1817	cputime=$cpumax
1818	if (( $cputime == 0 ))
1819	then
1820	printf "\n +++ cpu-time is undefined"
1821	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1822	printf "\n >>> "
1823	read cputime 1>/dev/null 2>&1
1824	else
1825	done=true
1826	fi
1827	cpumax=$cputime
1828	done
1829
1830	(( minuten = cputime / 60 ))
1831	(( sekunden = cputime - minuten * 60 ))
1832
1833
1834	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1835	if [[ $do_batch = true ]]
1836	then
1837	done=false
1838	while [[ $done = false ]]
1839	do
1840	if (( memory == 0 ))
1841	then
1842	printf "\n +++ memory demand is undefined"
1843	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1844	printf "\n >>> "
1845	read memory 1>/dev/null 2>&1
1846	else
1847	done=true
1848	fi
1849	done
1850	fi
1851
1852
1853	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1854	if [[ $do_remote = true && -z $remote_username ]]
1855	then
1856	while [[ -z $remote_username ]]
1857	do
1858	printf "\n +++ username on remote host \"$host\" is undefined"
1859	printf "\n >>> Please type username:"
1860	printf "\n >>> "
1861	read remote_username
1862	done
1863	mc="$mc -u$remote_username"
1864	fi
1865
1866	###########################################################################
1867	# HEADER-AUSGABE
1868	###########################################################################
1869
1870
1871	calltime=$(date)
1872	printf "\n"
1873	# [[ $silent = false ]] && clear
1874	printf "#--------------------------------------------------------------# \n"
1875	printf "\| $version$calltime \| \n"
1876	printf "\| \| \n"
1877	spalte1="called on:"; spalte2=$localhost_realname
1878	printf "\| $spalte1$spalte2 \| \n"
1879	if [[ $local_compile = false ]]
1880	then
1881	if [[ $do_remote = true ]]
1882	then
1883	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1884	else
1885	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1886	fi
1887	else
1888	spalte1="compiling test only!"; spalte2=""
1889	fi
1890	printf "\| $spalte1$spalte2 \| \n"
1891	if [[ -n $numprocs ]]
1892	then
1893	spalte1="number of PEs:"; spalte2=$numprocs
1894	printf "\| $spalte1$spalte2 \| \n"
1895	fi
1896	if [[ -n $tasks_per_node ]]
1897	then
1898	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1899	printf "\| $spalte1$spalte2 \| \n"
1900	fi
1901	if [[ $threads_per_task != 1 ]]
1902	then
1903	spalte1="threads per task:"; spalte2="$threads_per_task"
1904	printf "\| $spalte1$spalte2 \| \n"
1905	fi
1906	printf "\| \| \n"
1907	if [[ $do_compile = true ]]
1908	then
1909	spalte1=cpp-directives:; spalte2=$C_PPOPTS
1910	printf "\| $spalte1$spalte2 \| \n"
1911	zeile=$(echo "$C_PPOPTS" \| cut -c41-)
1912	while [[ "$zeile" != "" ]]
1913	do
1914	spalte1=""
1915	spalte2=$zeile
1916	printf "\| $spalte1$spalte2 \| \n"
1917	zeile=$(echo "$zeile" \| cut -c41-)
1918	done
1919
1920	spalte1=compiler-options:; spalte2="$FOPTS $MODULE_OPTIONS"
1921	printf "\| $spalte1$spalte2 \| \n"
1922	zeile=$(echo "$FOPTS $MODULE_OPTIONS" \| cut -c41-)
1923	while [[ "$zeile" != "" ]]
1924	do
1925	spalte1=""
1926	spalte2=$zeile
1927	printf "\| $spalte1$spalte2 \| \n"
1928	zeile=$(echo "$zeile" \| cut -c41-)
1929	done
1930
1931	spalte1=linker-options:; spalte2=$LOPTS
1932	printf "\| $spalte1$spalte2 \| \n"
1933	zeile=$(echo "$LOPTS" \| cut -c41-)
1934	while [[ "$zeile" != "" ]]
1935	do
1936	spalte1=""
1937	spalte2=$zeile
1938	printf "\| $spalte1$spalte2 \| \n"
1939	zeile=$(echo "$zeile" \| cut -c41-)
1940	done
1941
1942	spalte1="main program":; spalte2=$mainprog
1943	printf "\| $spalte1$spalte2 \| \n"
1944	if [[ "$use_makefile" = true ]]
1945	then
1946	spalte1="using \"make\" for com"; spalte2="piling and linking"
1947	printf "\| $spalte1$spalte2 \| \n"
1948	fi
1949	# if [[ $vtk_graphics = true ]]
1950	# then
1951	# spalte1=""; spalte2="wird in C++ - Programm eingebunden (vtk)"
1952	# printf "\| $spalte1$spalte2 \| \n"
1953	# fi
1954	else
1955	spalte1=executable:; spalte2=$executable
1956	printf "\| $spalte1$spalte2 \| \n"
1957	fi
1958	printf "\| \| \n"
1959	spalte1="base name of files":; spalte2=$fname
1960	printf "\| $spalte1$spalte2 \| \n"
1961	if [[ $fname != $afname ]]
1962	then
1963	spalte1="base name of input files":; spalte2=$afname
1964	printf "\| $spalte1$spalte2 \| \n"
1965	fi
1966	spalte1="INPUT control list":; spalte2=$input_list
1967	printf "\| $spalte1$spalte2 \| \n"
1968	spalte1="OUTPUT control list":; spalte2=$output_list
1969	printf "\| $spalte1$spalte2 \| \n"
1970
1971	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
1972	then
1973	spalte1="memory demand / PE":; spalte2="$memory MB"
1974	printf "\| $spalte1$spalte2 \| \n"
1975	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
1976	printf "\| $spalte1$spalte2 \| \n"
1977	fi
1978
1979	if [[ $do_compile = true ]]
1980	then
1981	printf "\| \| \n"
1982	printf "\| Files to be compiled: \| \n"
1983	zeile=$source_list
1984	while [[ "$zeile" != "" ]]
1985	do
1986	spalte3=$zeile
1987	printf "\| $spalte3 \| \n"
1988	zeile=$(echo "$zeile" \| cut -c61-)
1989	done
1990	fi
1991	printf "#--------------------------------------------------------------#"
1992
1993
1994
1995	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
1996	if [[ $do_trace = true ]]
1997	then
1998	(( i = 0 ))
1999	while (( i < iin ))
2000	do
2001	(( i = i + 1 ))
2002	if (( i == 1 ))
2003	then
2004	printf "\n\n >>> INPUT-file assignments:\n"
2005	fi
2006	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2007	done
2008	(( i = 0 ))
2009	while (( i < iout ))
2010	do
2011	(( i = i + 1 ))
2012	if (( i == 1 ))
2013	then
2014	printf "\n\n >>> OUTPUT-file assignments:\n"
2015	fi
2016	printf "\n ${localout[$i]} : ${pathout[$i]}"
2017	done
2018	(( i = 0 ))
2019	while (( i < iic ))
2020	do
2021	(( i = i + 1 ))
2022	if (( i == 1 ))
2023	then
2024	printf "\n\n >>> INPUT-commands:\n"
2025	fi
2026	printf "\n ${in_command[$i]}"
2027	done
2028	(( i = 0 ))
2029	while (( i < ioc ))
2030	do
2031	(( i = i + 1 ))
2032	if (( i == 1 ))
2033	then
2034	printf "\n\n >>> OUTPUT-commands:\n"
2035	fi
2036	printf "\n ${out_command[$i]}"
2037	done
2038	fi
2039
2040
2041	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2042	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2043	then
2044	antwort=dummy
2045	printf "\n\n"
2046	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2047	do
2048	printf " >>> everything o.k. (y/n) ? "
2049	read antwort
2050	done
2051	if [[ $antwort = n \|\| $antwort = N ]]
2052	then
2053	locat=user_abort; (( iec = 0 )); exit
2054	fi
2055	if [[ $do_batch = true ]]
2056	then
2057	printf " >>> batch-job will be created and submitted"
2058	else
2059	if [[ $local_compile = false ]]
2060	then
2061	printf " >>> MRUN will now continue to execute on this machine"
2062	else
2063	printf " >>> a test compilation will now be carried out on this machine"
2064	fi
2065	fi
2066	fi
2067
2068
2069
2070
2071	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2072	# CHENDE AKTIONEN DURCHGEFUEHRT
2073	if [[ $do_batch = false ]]
2074	then
2075
2076
2077	# TEMPORAEREN KATALOG ERZEUGEN
2078	mkdir -p $TEMPDIR
2079	chmod go+rx $TEMPDIR
2080	tmpcreate=true
2081
2082
2083	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2084	# TEMPORAERES VERZEICHNIS KOPIEREN
2085	if [[ $do_compile = true ]]
2086	then
2087
2088	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2089	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2090	if [[ $localhost = nech ]]
2091	then
2092	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2093	if mkdir -p $TEMPDIR_COMPILE
2094	then
2095	printf "\n *** \"$TEMPDIR_COMPILE\" "
2096	printf "\n is generated as temporary directory for cross compiling\n"
2097	else
2098	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2099	printf "\n needed for cross compilation failed"
2100	locat=compile
2101	exit
2102	fi
2103	else
2104	TEMPDIR_COMPILE=$TEMPDIR
2105	fi
2106
2107	if [[ "$use_makefile" = true ]]
2108	then
2109
2110	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2111	line=""
2112	grep "%depository_path" $config_file \| while read line
2113	do
2114	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2115	then
2116	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2117	then
2118	global_depository_path=`echo $line \| cut -d" " -s -f2`
2119	fi
2120	fi
2121	done
2122
2123	line=""
2124	grep " $localhost" $config_file \| grep "%depository_path" \| while read line
2125	do
2126	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2127	then
2128	local_depository_path=`echo $line \| cut -d" " -s -f2`
2129	fi
2130	done
2131
2132	if [[ "$local_depository_path" = "" ]]
2133	then
2134	if [[ "$global_depository_path" != "" ]]
2135	then
2136	local_depository_path=$global_depository_path
2137	else
2138	printf "\n\n +++ no depository path found in configuration file"
2139	printf "\n for local host \"$localhost\" "
2140	printf "\n please set \"\%depository_path\" in configuration file\n"
2141	locat=config_file; exit
2142	fi
2143	fi
2144	eval local_depository_path=$local_depository_path
2145
2146	basename=`print $mainprog \| cut -f1 -d"."`
2147	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2148	if [[ ! -f $make_depository ]]
2149	then
2150	printf "\n"
2151	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2152	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2153	else
2154	cp $make_depository $TEMPDIR_COMPILE
2155	cd $TEMPDIR_COMPILE
2156	tar -xf $make_depository > /dev/null
2157	cd - > /dev/null
2158	fi
2159
2160	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2161
2162	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2163	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2164	# MAKEFILE EINTRAGEN
2165	cd $TEMPDIR_COMPILE
2166	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2167	if [[ "$interface_file" != "" ]]
2168	then
2169	interface_file=`echo $interface_file \| cut -d"." -f1`
2170	mv Makefile Makefile_old
2171	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2172	fi
2173	cd - > /dev/null
2174	fi
2175	else
2176	cp $executable ${TEMPDIR}/a.out
2177	fi
2178
2179
2180	# WECHSEL IN TEMPORAEREN KATALOG
2181	cd $TEMPDIR
2182	printf "\n *** changed to temporary directory: $TEMPDIR"
2183
2184
2185	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2186	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2187	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2188	# ERMITTELN
2189	(( i = 0 ))
2190	while (( i < iout ))
2191	do
2192	(( i = i + 1 ))
2193	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2194	then
2195	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2196	else
2197	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2198	fi
2199	done
2200
2201
2202	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2203	if [[ $do_compile = true ]]
2204	then
2205
2206
2207	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2208	if [[ "$use_makefile" = true ]]
2209	then
2210	printf "\n\n\n *** compilation starts \n$striche\n"
2211	printf " *** compilation with make using following options:\n"
2212	printf " compilername: $compiler_name\n"
2213	printf " options: $FOPTS\n"
2214	printf " preprocessor-directives: $C_PPOPTS \n"
2215	printf " linker-options: $LOPTS \n"
2216	printf " source code files: $source_list \n"
2217
2218	if [[ $localhost = nech ]]
2219	then
2220	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$C_PPOPTS\" F90FLAGS=\"$FOPTS\" LDFLAGS=\"$LOPTS\" "
2221	cp $TEMPDIR_COMPILE/a.out .
2222	[[ $? != 0 ]] && compile_error=true
2223	rm -rf $TEMPDIR_COMPILE
2224	else
2225	make -f Makefile PROG=a.out F90=$compiler_name COPT="$C_PPOPTS" F90FLAGS="$FOPTS" LDFLAGS="$LOPTS"
2226	fi
2227
2228	# UEBERSETZUNG "VON HAND" (OHNE MAKE)
2229	else
2230
2231	# HPMUK EVTL. PRAEPROZESSOR LAUFEN LASSEN
2232	if [[ $localhost = hpmuk ]]
2233	then
2234	(( i = 0 ))
2235	new_source_list=""
2236	for filename in $source_list
2237	do
2238	basename=`print $filename \| cut -f1 -d"."`
2239	extension=`print $filename \| cut -f2 -d"."`
2240	if [[ $extension = F && $localhost != hpmuk ]]
2241	then
2242	(( i = i + 1 ))
2243	if (( i == 1 ))
2244	then
2245	printf "\n\n *** preprocessor-calls:\n$striche"
2246	fi
2247	printf "\n $praeproc $PPOPTS -P $filename > ${basename}.f 2> /dev/null"
2248	$praeproc $PPOPTS -P $filename > ${basename}.f 2> /dev/null
2249	new_source_list="$new_source_list "${basename}.f
2250	elif [[ $extension = f90 ]]
2251	then
2252	(( i = i + 1 ))
2253	if (( i == 1 ))
2254	then
2255	printf "\n\n *** preprocessor-calls:\n$striche"
2256	fi
2257	mv $filename ${basename}.F90
2258	printf "\n $praeproc $PPOPTS -C -P ${basename}.F90 > $filename 2> /dev/null"
2259	$praeproc $PPOPTS -C -P ${basename}.F90 > $filename 2> /dev/null
2260	new_source_list="$new_source_list "$filename
2261	rm -f ${basename}.F90
2262	else
2263	new_source_list="$new_source_list "$filename
2264	fi
2265	done
2266	source_list="$new_source_list"
2267	if (( i != 0 ))
2268	then
2269	printf "\n$striche\n *** preprocessor-calls finished\n"
2270	fi
2271	fi
2272
2273
2274	# UEBERSETZUNG DER QUELLTEXT-DATEIEN UND DES HAUPTPROGRAMMS
2275	# $CPPOPTS FUER CPP-PRAEPROZESSOR WURDEN OBEN BESTIMMT
2276	printf "\n\n\n *** compilation starts \n$striche\n"
2277
2278
2279	# VORWEG EVTL. UEBERSETZUNG VON PROGRAMMTEILEN MIT SPEZIELLEN
2280	# COMPILERN UND/ODER COMPILEROPTIONEN. DIESE WERDEN BEI DER SPAETEREN
2281	# EIGENTLICHEN UEBERSETZUNG ALS OBJECT-FILES EINGEBUNDEN
2282	new_source_list=""
2283	for filename in $source_list
2284	do
2285
2286	basename=`print $filename \| cut -f1 -d"."`
2287
2288	# EVTL. SPEZIELLEN COMPILER FUER UP BESTIMMEN
2289	comp_var=$(eval echo \$comp_$basename) # \$ liefert evtl. fuer source alternativ vereinbarten Compiler
2290	comp_opt_var=$(eval echo \$$basename) # \$$ liefert evtl. fuer source vereinbarte Compiler-Environment-Variable
2291
2292	if [[ "$comp_var" = "" && "$comp_opt_var" = "" ]]
2293	then
2294	new_source_list="$new_source_list "$filename
2295	else
2296
2297	if [[ "$comp_var" = "" ]]
2298	then
2299	SPECIAL_COMPILER=$compiler_name
2300	else
2301	SPECIAL_COMPILER=$comp_var
2302	fi
2303
2304	if [[ "$comp_opt_var" = "" ]]
2305	then
2306	SPECIAL_FOPTS=$FOPTS
2307	else
2308	SPECIAL_FOPTS="$parallel_options $(eval echo \$$comp_opt_var)"
2309	fi
2310
2311	printf " *** compiling of $filename with special compiler call: $SPECIAL_COMPILER $CPPOPTS -c $SPECIAL_FOPTS \n"
2312	$SPECIAL_COMPILER $C_PPOPTS -c $SPECIAL_FOPTS $MODULE_OPTIONS $filename
2313	if [[ $? != 0 ]]
2314	then
2315	printf "\n +++ compiling error occured"
2316	locat=compile
2317	exit
2318	fi
2319	new_source_list="$new_source_list "${basename}.o
2320	fi
2321	done
2322	source_list="$new_source_list"
2323
2324
2325	# EIGENTLICHE UEBERSETZUNG MIT DEN NORMALEN OPTIONEN
2326	printf " *** compilation with standard options: $compiler_name $FOPTS $MODULE_OPTIONS \n"
2327	printf " preprocessor-directives: $C_PPOPTS \n"
2328	printf " linker-options: $LOPTS \n"
2329	printf " source code files: $source_list \n"
2330	if [[ $localhost = hpmuk ]]
2331	then
2332	if [[ $localhost_realname = caurus ]]
2333	then
2334	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $source_list $LOPTS
2335	else
2336	remsh caurus "export PATH=/opt/fortran90/bin:$PATH; cd `pwd`; $compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $source_list $LOPTS"
2337	fi
2338	else
2339	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $LOPTS $source_list
2340	fi
2341	fi
2342	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2343	then
2344	printf "\n +++ error occured while compiling or linking"
2345	locat=compile
2346	exit
2347	else
2348	printf "$striche\n *** compilation finished \n"
2349	fi
2350	fi
2351
2352
2353	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2354	if [[ $local_compile = true ]]
2355	then
2356	cd $HOME
2357	rm -rf $TEMPDIR
2358	locat=local_compile; exit
2359	fi
2360
2361
2362	# BEREITSTELLEN DER INPUT-DATEIEN
2363	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2364	(( i = 0 ))
2365	while (( i < iin ))
2366	do
2367	(( i = i + 1 ))
2368	if (( i == 1 ))
2369	then
2370	printf "\n\n *** providing INPUT-files:\n$striche"
2371	fi
2372
2373
2374	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2375	if [[ "${transin[$i]}" = unavailable ]]
2376	then
2377	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2378	then
2379	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2380	printf "\n is not available!"
2381	else
2382	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2383	printf "\n is not available!"
2384	fi
2385	continue
2386	fi
2387
2388	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2389	files_for_pes=false; datentyp=file
2390	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2391	then
2392	files_for_pes=true; datentyp=directory
2393	actionin[$i]=""
2394	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2395	then
2396	actionin[$i]=""
2397	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2398	then
2399	files_for_pes=true; datentyp=directory
2400	actionin[$i]="ar"
2401	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2402	then
2403	actionin[$i]="ar"
2404	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2405	then
2406	files_for_pes=true; datentyp=directory
2407	actionin[$i]="fl"
2408	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2409	then
2410	actionin[$i]="fl"
2411	fi
2412
2413	if [[ $files_for_pes = true ]]
2414	then
2415	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2416	else
2417	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2418	fi
2419
2420	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2421	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2422	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2423	# SERVER ZU HOLEN
2424	if [[ "${actionin[$i]}" = fl ]]
2425	then
2426	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2427	if [[ $files_for_pes = false ]]
2428	then
2429	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2430	then
2431	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2432	got_tmp[$i]=true
2433	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2434	then
2435	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2436	printf "\n *** trying to use backup copy in \"$WORK\" "
2437	cp $WORK/${frelin[$i]} ${localin[$i]}
2438	else
2439	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2440	printf "\n or \"$tmp_data_catalog\" does not exist!"
2441	printf "\n *** trying to get copy from archive"
2442	actionin[$i]=ar
2443	fi
2444	else
2445	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2446	then
2447	mkdir ${localin[$i]}
2448	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
2449	got_tmp[$i]=true
2450	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2451	then
2452	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2453	printf "\n *** trying to use backup copy in \"$WORK\" "
2454	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2455	else
2456	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2457	printf "\n or \"$tmp_data_catalog\" does not exist!"
2458	printf "\n *** trying to get copy from archive"
2459	actionin[$i]=ar
2460	fi
2461	fi
2462	fi
2463
2464
2465	# DATEI LIEGT AUF ARCHIV-SERVER
2466	if [[ "${actionin[$i]}" = ar ]]
2467	then
2468
2469	if [[ $files_for_pes = false ]]
2470	then
2471	printf "\n file will be restored from archive-system ($archive_system)!"
2472	else
2473	printf "\n directory will be restored from archive-system ($archive_system)!"
2474	fi
2475
2476	file_restored=false
2477
2478	if [[ $archive_system = asterix ]]
2479	then
2480	do_stagein=true
2481	(( stagein_anz = 0 ))
2482	while [[ $do_stagein = true ]]
2483	do
2484	if [[ $files_for_pes = false ]]
2485	then
2486	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2487	else
2488	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2489	fi
2490	cat STAGEIN_OUTPUT
2491	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2492	then
2493	file_restored=true
2494	do_stagein=false
2495	else
2496	(( stagein_anz = stagein_anz + 1 ))
2497	if (( stagein_anz == 10 ))
2498	then
2499	printf "\n +++ stagein stoped after 10 tries"
2500	locat=stage
2501	exit
2502	fi
2503	printf "\n +++ restoring from archive failed, trying again:"
2504	sleep 900
2505	fi
2506	done
2507	elif [[ $archive_system = DMF ]]
2508	then
2509	if [[ $files_for_pes = false ]]
2510	then
2511	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2512	locat=DMF
2513	exit
2514	else
2515	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2516	cp -r $ARCHIVE/${frelin[$i]} $PWD
2517	file_restored=true
2518	fi
2519	elif [[ $archive_system = tivoli ]]
2520	then
2521	if [[ $files_for_pes = false ]]
2522	then
2523	if [[ $localhost = ibmh ]]
2524	then
2525	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2526	else
2527	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2528	fi
2529	else
2530	(( inode = 0 ))
2531	while (( inode < nodes ))
2532	do
2533	if [[ $localhost = ibmh ]]
2534	then
2535	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2536	else
2537	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2538	fi
2539	(( inode = inode + 1 ))
2540	done
2541	fi
2542	file_restored=true
2543	elif [[ $archive_system = ut ]]
2544	then
2545	if [[ $files_for_pes = false ]]
2546	then
2547	cp $UT/${frelin[$i]} .
2548	else
2549	(( inode = 0 ))
2550	while (( inode < nodes ))
2551	do
2552	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2553	(( inode = inode + 1 ))
2554	done
2555	fi
2556	file_restored=true
2557	else
2558	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2559	locat=rearchive
2560	exit
2561	fi
2562
2563	if [[ $file_restored = true ]]
2564	then
2565
2566	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2567	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2568	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2569	if [[ $files_for_pes = false ]]
2570	then
2571	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2572	else
2573	mkdir $tmp_data_catalog/${frelin[$i]}
2574	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2575	fi
2576	got_tmp[$i]=true
2577
2578	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2579	mv ${frelin[$i]} ${localin[$i]}
2580
2581	fi
2582	fi
2583
2584
2585	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2586	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2587	then
2588
2589	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2590	then
2591
2592	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2593	printf "\n file will be provided for $numprocs processors"
2594	mkdir ${localin[$i]}
2595	ival=$numprocs
2596	(( ii = 0 ))
2597	while (( ii <= ival-1 ))
2598	do
2599	if (( ii < 10 ))
2600	then
2601	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2602	elif (( ii < 100 ))
2603	then
2604	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2605	elif (( ii < 1000 ))
2606	then
2607	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2608	else
2609	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2610	fi
2611	(( ii = ii + 1 ))
2612	done
2613
2614	else
2615
2616	if [[ $files_for_pes = true ]]
2617	then
2618
2619	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2620	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2621	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2622	# PER MOVE UMBENANNT WERDEN
2623	printf "\n providing $numprocs files for the respective processors"
2624	mkdir ${localin[$i]}
2625	cp -r ${absnamein[$i]}/* ${localin[$i]}
2626
2627	else
2628	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2629	cp ${absnamein[$i]} ${localin[$i]}
2630	fi
2631	fi
2632	fi
2633
2634	done
2635	if (( i != 0 ))
2636	then
2637	printf "\n$striche\n *** all INPUT-files provided \n"
2638	fi
2639
2640
2641	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2642	# LESEN VON PALM)
2643	cat > ENVPAR << %%END%%
2644	&envpar run_identifier = '$fname', host = '$localhost',
2645	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2646	maximum_cpu_time_allowed = ${cpumax}. /
2647
2648	%%END%%
2649
2650
2651	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2652	(( i = 0 ))
2653	while (( i < iic ))
2654	do
2655	(( i = i + 1 ))
2656	if (( i == 1 ))
2657	then
2658	printf "\n\n *** execution of INPUT-commands:\n$striche"
2659	fi
2660	printf "\n >>> ${in_command[$i]}"
2661	eval ${in_command[$i]}
2662	if (( i == iic ))
2663	then
2664	printf "\n$striche\n"
2665	fi
2666	done
2667
2668
2669	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2670	cpurest=${cpumax}.
2671
2672
2673	# PROGRAMMSTART
2674	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2675	PATH=$PATH:$TEMPDIR
2676
2677	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2678	then
2679	if [[ "$ENVIRONMENT" = BATCH ]]
2680	then
2681	printf "\n +++ debug is allowed in interactive mode only"
2682	locat=debug
2683	exit
2684	fi
2685	if [[ $localhost = hpmuk ]]
2686	then
2687	echo "property sdir .,${source_path}, ${add_source_path}" > .dderc
2688	dde a.out
2689	elif [[ $localhost = decalpha ]]
2690	then
2691	dxladebug a.out
2692	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2693	then
2694
2695	# SETUP THE IBM MPI ENVIRONMENT
2696	export MP_SHARED_MEMORY=yes
2697	export AIXTHREADS_SCOPE=S
2698	export OMP_NUM_THREADS=$threads_per_task
2699	export AUTHSTATE=files
2700	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2701
2702	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2703	export MP_ADAPTER_USE=shared
2704	export MP_CPU_USE=multiple
2705	export MP_TIMEOUT=1200
2706
2707	unset MP_TASK_AFFINITY
2708
2709	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2710	#(( ii = 1 ))
2711	#while (( ii <= $numprocs ))
2712	#do
2713	# echo $localhost_realname >> hostfile
2714	# (( ii = ii + 1 ))
2715	#done
2716	#export MP_HOSTFILE=hostfile
2717
2718	if [[ "$LOADLBATCH" = yes ]]
2719	then
2720	totalview poe a.out $ROPTS
2721	else
2722	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2723	export TVDSVRLAUNCHCMD=ssh
2724	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2725	fi
2726	else
2727	printf "\n +++ no debug available on \"$localhost\" "
2728	printf "\n or not implemented in mrun so far"
2729	locat=debug
2730	exit
2731	fi
2732	else
2733	if [[ -n $numprocs ]]
2734	then
2735
2736	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2737	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2738	then
2739	# SETUP THE IBM MPI ENVIRONMENT
2740	export MP_SHARED_MEMORY=yes
2741	export AIXTHREAD_SCOPE=S
2742	export OMP_NUM_THREADS=$threads_per_task
2743	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2744	export AUTHSTATE=files
2745	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2746	# export MP_PRINTENV=yes
2747
2748	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2749	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2750	export MP_WAIT_MODE=poll
2751	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2752	# export MP_EAGER_LIMIT=65535
2753
2754	# # TESTWEISE FUER TURBOMPI (JAN 05)
2755	# export MPJ_MTAB=128
2756	# export MPJ_ALLTOALL=1
2757	# export MPJ_ALLTOALLV=1
2758
2759	if [[ "$LOADLBATCH" = yes ]]
2760	then
2761	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2762	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2763	then
2764	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS > aout_output 2>&1
2765	else
2766	poe ./a.out $ROPTS > aout_output 2>&1
2767	fi
2768	else
2769	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2770	then
2771	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS > aout_output 2>&1
2772	elif [[ $localhost = ibmy ]]
2773	then
2774	if [[ -f $hostfile ]]
2775	then
2776	cp $hostfile hostfile
2777	else
2778	(( ii = 1 ))
2779	while (( ii <= $numprocs ))
2780	do
2781	echo $localhost_realname >> hostfile
2782	(( ii = ii + 1 ))
2783	done
2784	fi
2785	export MP_HOSTFILE=hostfile
2786	./a.out -procs $tasks_per_node $ROPTS > aout_output 2>&1
2787	else
2788	if [[ "$host_file" = "" ]]
2789	then
2790	printf "\n +++ no hostfile given in configuration file"
2791	locat=config_file
2792	exit
2793	else
2794	eval host_file=$host_file
2795	fi
2796	export MP_HOSTFILE=$host_file
2797	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS > aout_output 2>&1
2798	fi
2799	fi
2800	elif [[ $host = nech \|\| $host = neck ]]
2801	then
2802	(( ii = nodes ))
2803	if [[ $ii = 1 ]]
2804	then
2805	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2806	export MPIPROGINF=YES
2807	echo "*** execution on single node with mpirun"
2808	mpirun -np $numprocs ./a.out $ROPTS > aout_output 2>&1
2809	else
2810	(( i = 0 ))
2811	while (( i < ii ))
2812	do
2813	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2814	(( i = i + 1 ))
2815	done
2816
2817	echo "#!/bin/sh" > mpi_exec_shell
2818	echo " " >> mpi_exec_shell
2819	echo "set -u" >> mpi_exec_shell
2820	echo "F_ERRCNT=0" >> mpi_exec_shell
2821	echo "MPIPROGINV=YES" >> mpi_exec_shell
2822	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2823	echo "cpurest=$cpurest" >> mpi_exec_shell
2824	echo "fname=$fname" >> mpi_exec_shell
2825	echo "localhost=$localhost" >> mpi_exec_shell
2826	echo "return_addres=$return_addres" >> mpi_exec_shell
2827	echo "return_username=$return_username" >> mpi_exec_shell
2828	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2829	echo "write_binary=$write_binary" >> mpi_exec_shell
2830	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2831	echo " " >> mpi_exec_shell
2832	echo "export F_ERRCNT" >> mpi_exec_shell
2833	echo "export MPIPROGINV" >> mpi_exec_shell
2834	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2835	echo "export cpurest" >> mpi_exec_shell
2836	echo "export fname" >> mpi_exec_shell
2837	echo "export localhost" >> mpi_exec_shell
2838	echo "export return_addres" >> mpi_exec_shell
2839	echo "export return_username" >> mpi_exec_shell
2840	echo "export tasks_per_node" >> mpi_exec_shell
2841	echo "export write_binary" >> mpi_exec_shell
2842	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2843	echo " " >> mpi_exec_shell
2844	echo "exec ./a.out > aout_output 2>&1" >> mpi_exec_shell
2845
2846	chmod u+x mpi_exec_shell
2847	export MPIPROGINF=YES
2848	mpirun -f multinode_config &
2849	wait
2850
2851	fi
2852	elif [[ $host = lcmuk ]]
2853	then
2854
2855	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2856	# DOES NOT EXIST
2857	if [[ -f $hostfile ]]
2858	then
2859	cp $hostfile hostfile
2860	else
2861	(( ii = 1 ))
2862	while (( ii <= $numprocs / $threads_per_task ))
2863	do
2864	echo $localhost_realname >> hostfile
2865	(( ii = ii + 1 ))
2866	done
2867	fi
2868	(( ii = $numprocs / $threads_per_task ))
2869	eval zeile=\"`head -n $ii hostfile`\"
2870	printf "\n *** running on: $zeile"
2871	export OMP_NUM_THREADS=$threads_per_task
2872	if [[ $threads_per_task != 1 ]]
2873	then
2874	printf "\n threads per task: $threads_per_task"
2875	fi
2876	printf "\n\n"
2877	if [[ $scirocco = true ]]
2878	then
2879	mpiexec -machinefile hostfile -n $ii a.out $ROPTS > aout_output 2>&1
2880	else
2881	mpirun -machinefile hostfile -np $ii a.out $ROPTS > aout_output 2>&1
2882	fi
2883	elif [[ $host = decalpha ]]
2884	then
2885	dmpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2886	elif [[ $host = lctit ]]
2887	then
2888	export runfile=runfile.$kennung
2889
2890	echo "cd $PWD" > $runfile
2891	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2892	echo "export cpurest=$cpurest" >> $runfile
2893	echo "export fname=$fname" >> $runfile
2894	echo "export localhost=$localhost" >> $runfile
2895	echo "export return_addres=$return_addres" >> $runfile
2896	echo "export return_username=$return_username" >> $runfile
2897	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2898	echo "export write_binary=$write_binary" >> $runfile
2899	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2900	echo "./a.out" >> $runfile
2901	chmod u+x $runfile
2902
2903	if [[ "$QUEUE" = interactive ]]
2904	then
2905	mpirun -np $numprocs $runfile $ROPTS > aout_output 2>&1
2906	else
2907	n1ge -fore -mpi $numprocs -q $queue $runfile $ROPTS > aout_output 2>&1
2908	fi
2909
2910	rm $runfile
2911	else
2912	mpprun -n $numprocs a.out $ROPTS > aout_output 2>&1
2913	fi
2914	[[ $? != 0 ]] && execution_error=true
2915
2916
2917	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2918	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2919	then
2920	apprentice
2921	fi
2922	else
2923	a.out $ROPTS > aout_output 2>&1
2924	fi
2925	fi
2926	if [[ $? != 0 \|\| $execution_error = true ]]
2927	then
2928
2929	# ABBRUCH BEI LAUFZEITFEHLER
2930	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2931	printf "\n +++ runtime error occured"
2932	locat=execution
2933	exit
2934	else
2935	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2936	printf "\n$striche\n *** execution finished \n"
2937	fi
2938
2939
2940
2941	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2942	(( i = 0 ))
2943	while (( i < ioc ))
2944	do
2945	(( i = i + 1 ))
2946	if (( i == 1 ))
2947	then
2948	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2949	fi
2950	printf "\n >>> ${out_command[$i]}"
2951	eval ${out_command[$i]}
2952	if (( i == ioc ))
2953	then
2954	printf "\n$striche\n"
2955	fi
2956	done
2957
2958
2959	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
2960	if [[ $do_trace = true ]]
2961	then
2962	printf "\n\n"
2963	ls -al
2964	fi
2965
2966
2967
2968	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
2969	(( i = 0 ))
2970	while (( i < iout ))
2971	do
2972	(( i = i + 1 ))
2973	if (( i == 1 ))
2974	then
2975	printf "\n\n *** saving OUTPUT-files:\n$striche"
2976	fi
2977
2978	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2979	files_for_pes=false; filetyp=file
2980	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
2981	then
2982	files_for_pes=true; filetyp=directory
2983	actionout[$i]=""
2984	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
2985	then
2986	actionout[$i]=""
2987	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
2988	then
2989	files_for_pes=true; filetyp=directory
2990	actionout[$i]="ar"
2991	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
2992	then
2993	actionout[$i]="ar"
2994	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
2995	then
2996	files_for_pes=true; filetyp=directory
2997	actionout[$i]="fl"
2998	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
2999	then
3000	actionout[$i]="fl"
3001	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3002	then
3003	files_for_pes=true; filetyp=directory
3004	actionout[$i]="tr"
3005	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3006	then
3007	actionout[$i]="tr"
3008	fi
3009
3010	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3011	then
3012	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3013	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3014	then
3015	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3016	else
3017
3018
3019	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3020	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3021	# REMOTE-RECHNUNGEN
3022	if [[ "${actionout[$i]}" = tr ]]
3023	then
3024	if [[ $localhost != $fromhost ]]
3025	then
3026	if [[ $files_for_pes = false ]]
3027	then
3028	cps=""
3029	cst=""
3030	else
3031	cps=-c
3032	cst="/"
3033	fi
3034	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3035	then
3036
3037	# TRANSFER IN EIGENSTAENDIGEM JOB
3038	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3039	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3040	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3041	if [[ $files_for_pes = false ]]
3042	then
3043	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3044	else
3045	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3046	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3047	fi
3048
3049	echo "set -x" > transfer_${localout[$i]}
3050	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3051	if [[ $filetransfer_protocol = ftp ]]
3052	then
3053	if [[ $files_for_pes = true ]]
3054	then
3055	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3056	fi
3057	printf "\n >>> OUTPUT: ${localout[$i]} by FTP in seperate job to"
3058	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3059	printf "\n or higher cycle\n"
3060	echo "ftpcopy -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3061	else
3062	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3063	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3064	printf "\n or higher cycle\n"
3065	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3066	fi
3067	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3068
3069	if [[ $localhost = nech ]]
3070	then
3071	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3072	else
3073	if [[ "$LOGNAME" = b323013 ]]
3074	then
3075	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3076	else
3077	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3078	fi
3079	fi
3080
3081	else
3082
3083	# TRANSFER INNERHALB DIESES JOBS
3084	transfer_failed=false
3085	if [[ $filetransfer_protocol = ftp ]]
3086	then
3087	if [[ $files_for_pes = true ]]
3088	then
3089	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3090	fi
3091	printf "\n >>> OUTPUT: ${localout[$i]} by FTP to"
3092	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3093	ftpcopy -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3094	[[ $? != 0 ]] && transfer_failed=true
3095	else
3096	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3097	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3098	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3099	[[ $? != 0 ]] && transfer_failed=true
3100	fi
3101
3102	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3103	# LOKALER MASCHINE ANLEGEN
3104	if [[ $transfer_failed = true ]]
3105	then
3106	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3107	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3108
3109	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3110	# ANLEGEN.
3111	eval local_catalog=${pathout[$i]}
3112	if [[ ! -d $local_catalog ]]
3113	then
3114	printf " *** local directory does not exist. Trying to create:\n"
3115	printf " $local_catalog \n"
3116	mkdir -p $local_catalog
3117	fi
3118	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3119	transfer_problems=true
3120	fi
3121	fi
3122	else
3123
3124	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3125	actionout[$i]=""
3126	fi
3127	fi
3128
3129
3130	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3131	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3132	# REMOTE-RECHNUNGEN
3133	if [[ "${actionout[$i]}" = tra ]]
3134	then
3135	if [[ $localhost != $fromhost ]]
3136	then
3137	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3138	then
3139
3140	# TRANSFER IN EIGENSTAENDIGEM JOB
3141	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3142	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3143	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3144	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3145
3146	echo "set -x" > transfer_${localout[$i]}
3147	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3148	if [[ $filetransfer_protocol = ftp ]]
3149	then
3150	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP in seperate job to"
3151	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3152	printf "\n or higher cycle\n"
3153	echo "ftpcopy -A -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3154	else
3155	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3156	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3157	printf "\n or higher cycle\n"
3158	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3159	fi
3160	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3161
3162	if [[ $localhost = nech ]]
3163	then
3164	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3165	else
3166	if [[ $LOGNAME = b323013 ]]
3167	then
3168	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3169	else
3170	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3171	fi
3172	fi
3173
3174	else
3175
3176	# TRANSFER INNERHALB DIESES JOBS
3177	transfer_failed=false
3178	if [[ $filetransfer_protocol = ftp ]]
3179	then
3180	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP to"
3181	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3182	ftpcopy -A -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3183	[[ $? != 0 ]] && transfer_failed=true
3184	else
3185	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3186	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3187	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3188	[[ $? != 0 ]] && transfer_failed=true
3189	fi
3190
3191	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3192	# LOKALER MASCHINE ANLEGEN
3193	if [[ $transfer_failed = true ]]
3194	then
3195	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3196	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3197
3198	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3199	# ANLEGEN
3200	eval local_catalog=${pathout[$i]}
3201	if [[ ! -d $local_catalog ]]
3202	then
3203	printf " *** local directory does not exist. Trying to create:\n"
3204	printf " $local_catalog \n"
3205	mkdir -p $local_catalog
3206	fi
3207
3208	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3209	transfer_problems=true
3210	fi
3211	fi
3212	else
3213
3214	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3215	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3216	actionout[$i]=a
3217	fi
3218	fi
3219
3220
3221	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3222	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3223	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3224	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3225	if [[ "${actionout[$i]}" = fl ]]
3226	then
3227	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3228	chmod g+rx $tmp_data_catalog
3229	if [[ $files_for_pes = false ]]
3230	then
3231	printf "\n >>> OUTPUT: ${localout[$i]} to"
3232	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3233	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3234	else
3235	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3236	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3237	mkdir $tmp_data_catalog/${frelout[$i]}
3238	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3239	fi
3240
3241
3242	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3243	if [[ $store_on_archive_system = true ]]
3244	then
3245
3246	if [[ $archive_system = asterix ]]
3247	then
3248	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3249	if [[ $files_for_pes = false ]]
3250	then
3251	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3252	else
3253	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3254	fi
3255	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3256	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3257	echo "then" >> archive_${frelout[$i]}
3258	echo " do_stageout=false" >> archive_${frelout[$i]}
3259	echo "else" >> archive_${frelout[$i]}
3260	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3261	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3262	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3263	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3264	if [[ $files_for_pes = false ]]
3265	then
3266	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3267	else
3268	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3269	fi
3270	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3271	echo "fi" >> archive_${frelout[$i]}
3272	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3273	elif [[ $archive_system = DMF ]]
3274	then
3275	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3276	if [[ $files_for_pes = false ]]
3277	then
3278	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3279	locat=DMF
3280	exit
3281	else
3282	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3283	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3284	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3285	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3286	fi
3287	elif [[ $archive_system = tivoli ]]
3288	then
3289	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3290	if [[ $files_for_pes = false ]]
3291	then
3292	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3293	echo "set -x" >> archive_${frelout[$i]}
3294	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3295	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3296	else
3297
3298	echo "set -x" >> archive_${frelout[$i]}
3299	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3300	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3301	cd $tmp_data_catalog
3302	all_files=`ls -1 ${frelout[$i]}/*`
3303	cd - > /dev/null
3304	(( inode = 0 ))
3305	(( tp1 = tasks_per_node + 1 ))
3306	while (( inode < nodes ))
3307	do
3308	# echo "*** all_files = \"$all_files\" "
3309	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3310	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3311	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3312	# echo "*** files = \"$files\" "
3313	# echo "*** all_files = \"$all_files\" "
3314	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3315	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3316	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3317	(( inode = inode + 1 ))
3318	done
3319	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3320	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3321	fi
3322	elif [[ $archive_system = ut ]]
3323	then
3324	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3325	if [[ $files_for_pes = false ]]
3326	then
3327	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3328	echo "set -x" >> archive_${frelout[$i]}
3329	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3330	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3331	else
3332
3333	echo "set -x" >> archive_${frelout[$i]}
3334	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3335	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3336	cd $tmp_data_catalog
3337	all_files=`ls -1 ${frelout[$i]}/*`
3338	cd - > /dev/null
3339	(( inode = 0 ))
3340	(( tp1 = tasks_per_node + 1 ))
3341	while (( inode < nodes ))
3342	do
3343	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3344	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3345	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3346	(( inode = inode + 1 ))
3347	done
3348	fi
3349	elif [[ $archive_system = none ]]
3350	then
3351	printf " +++ archiving on $localhost not available!\n"
3352	fi
3353
3354	if [[ $archive_system != none ]]
3355	then
3356	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3357	then
3358	subjob -d -v -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3359	elif [[ $localhost = nech ]]
3360	then
3361	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3362	fi
3363	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3364	fi
3365	else
3366	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3367	fi
3368
3369
3370	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3371	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3372	if [[ $files_for_pes = false ]]
3373	then
3374	cat /dev/null > ${pathout[$i]}
3375	else
3376	mkdir -p ${pathout[$i]}
3377	fi
3378
3379	fi
3380
3381
3382	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3383	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3384	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3385	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3386	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3387	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3388	if [[ "${actionout[$i]}" = ar ]]
3389	then
3390	if [[ $files_for_pes = false ]]
3391	then
3392	printf "\n >>> OUTPUT: ${localout[$i]} to"
3393	printf "\n ${pathout[$i]}"
3394	printf "\n File will be copied to archive-system ($archive_system) !\n"
3395	else
3396	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3397	printf "\n ${pathout[$i]}"
3398	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3399	fi
3400	mv ${localout[$i]} ${frelout[$i]}
3401
3402	file_saved=false
3403
3404	if [[ $archive_system = asterix ]]
3405	then
3406	do_stageout=true
3407	(( stageout_anz = 0 ))
3408	while [[ $do_stageout = true ]]
3409	do
3410	if [[ $files_for_pes = false ]]
3411	then
3412	stageout ${frelout[$i]} > STAGE_OUTPUT
3413	else
3414	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3415	fi
3416	cat STAGE_OUTPUT
3417	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3418	then
3419	file_saved=true
3420	do_stageout=false
3421	else
3422	if [[ $files_for_pes = false ]]
3423	then
3424	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3425	else
3426	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3427	fi
3428	(( stageout_anz = stageout_anz + 1 ))
3429	if (( stageout_anz == 10 ))
3430	then
3431	printf "\n +++ stoped after 10 unsuccessful tries!"
3432	archive_save=false
3433	do_stageout=false
3434	else
3435	printf "\n *** new try to store on archive after 15 min:"
3436	sleep 900
3437	fi
3438	fi
3439	done
3440	elif [[ $archive_system = DMF ]]
3441	then
3442	if [[ $files_for_pes = false ]]
3443	then
3444	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3445	locat=DMF
3446	exit
3447	else
3448	rm -rf $ARCHIVE/${frelout[$i]}
3449	cp -r ${frelout[$i]} $ARCHIVE
3450	fi
3451	file_saved=true
3452	elif [[ $archive_system = tivoli ]]
3453	then
3454	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3455	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3456	# GELEGT WERDEN
3457	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3458	chmod g+rx $tmp_data_catalog
3459	if [[ $files_for_pes = false ]]
3460	then
3461	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3462	else
3463	mkdir $tmp_data_catalog/${frelout[$i]}
3464	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3465	fi
3466
3467	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3468	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3469	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3470	if [[ $files_for_pes = false ]]
3471	then
3472	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3473	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3474	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3475	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3476	else
3477	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3478	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3479	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3480	fi
3481
3482	subjob -v -d -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3483	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3484	file_saved=true
3485
3486	elif [[ $archive_system = ut ]]
3487	then
3488	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3489	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3490	# GELEGT WERDEN
3491	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3492	chmod g+rx $tmp_data_catalog
3493	if [[ $files_for_pes = false ]]
3494	then
3495	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3496	else
3497	mkdir $tmp_data_catalog/${frelout[$i]}
3498	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3499	fi
3500
3501	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3502	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3503	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3504	if [[ $files_for_pes = false ]]
3505	then
3506	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3507	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3508	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3509	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3510	else
3511	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3512	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3513	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3514	fi
3515
3516	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3517	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3518	file_saved=true
3519
3520	else
3521	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3522	archive_save=false
3523	fi
3524	if [[ $file_saved = true ]]
3525	then
3526	if [[ $files_for_pes = false ]]
3527	then
3528	cat /dev/null > ${pathout[$i]}
3529	else
3530	mkdir -p ${pathout[$i]}
3531	fi
3532	fi
3533	fi
3534
3535	# APPEND AUF LOKALER MASCHINE
3536	if [[ "${actionout[$i]}" = "a" ]]
3537	then
3538	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3539	cat ${localout[$i]} >> ${pathout[$i]}
3540	fi
3541
3542	# KOPIEREN AUF LOKALER MASCHINE
3543	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3544	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3545	then
3546
3547	# KOPIEREN AUF EINPROZESSORMASCHINE
3548	if [[ "${extout[$i]}" != " " ]]
3549	then
3550	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3551	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3552	else
3553	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3554	cp ${localout[$i]} ${pathout[$i]}
3555	fi
3556
3557	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3558	then
3559
3560	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3561	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3562	# WIRD DANN KOPIERT
3563	# PER MOVE UMBENANNT WERDEN
3564	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3565	cp -r ${localout[$i]} ${pathout[$i]}
3566
3567	fi
3568	fi
3569	done
3570	if (( i != 0 ))
3571	then
3572	if [[ $transfer_problems = true ]]
3573	then
3574	printf "\n$striche\n *** OUTPUT-files saved"
3575	printf "\n +++ WARNING: some data transfers failed! \n"
3576	else
3577	printf "\n$striche\n *** all OUTPUT-files saved \n"
3578	fi
3579	fi
3580
3581
3582	# EVENTUELL FOLGEJOB STARTEN
3583	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3584	if [[ -f CONTINUE_RUN ]]
3585	then
3586
3587	if [[ $archive_save = true ]]
3588	then
3589
3590	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3591	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3592	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3593	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3594	# HANDEN
3595	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3596	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3597	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3598	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3599	then
3600	mc=`echo $mc \| sed 's/#/f/g'`
3601	fi
3602
3603
3604	# JOB STARTEN
3605	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3606	echo " $mc"
3607	printf "\n$striche\n"
3608	if [[ $localhost != $fromhost ]]
3609	then
3610
3611	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3612	then
3613	echo "*** ssh will be used to initiate restart-runs!"
3614	echo " return_addres=\"$return_addres\" "
3615	echo " return_username=\"$return_username\" "
3616	if [[ $return_addres = 172.20.25.41 ]]
3617	then
3618	# WORKAROUND AUF SCIROCCO AM TIT
3619	print "PATH=\$PATH:$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3620	else
3621	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3622	fi
3623	else
3624	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3625	locat=restart; exit
3626	fi
3627
3628	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3629	# DER AKTUELLE JOB ENDET
3630	sleep 30
3631
3632	else
3633
3634	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3635	# RUFEN WERDEN
3636	cd $LOCAL_PWD
3637	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3638	cd - > /dev/null
3639	fi
3640	printf "\n$striche\n *** restart-run initiated \n"
3641
3642
3643	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3644	# GEHOLT WORDEN SIND, LOESCHEN
3645	(( i = 0 ))
3646	while (( i < iin ))
3647	do
3648	(( i = i + 1 ))
3649	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3650	then
3651	rm -r $tmp_data_catalog/${frelin[$i]}
3652	fi
3653	done
3654
3655	else
3656
3657	printf "\n +++ no restart-run possible, since errors occured"
3658	printf "\n during the archive process"
3659	fi
3660
3661	fi
3662
3663
3664
3665	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3666	if [[ "$email_notification" != "" ]]
3667	then
3668
3669	if [[ $localhost != $fromhost ]]
3670	then
3671	if [[ -f CONTINUE_RUN ]]
3672	then
3673	echo "PALM restart run necessary" > email_text
3674	echo "description header of actual run:" >> email_text
3675	cat CONTINUE_RUN >> email_text
3676	echo "mrun-command to restart:" >> email_text
3677	echo "$mc" >> email_text
3678	else
3679	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3680	fi
3681	mail $email_notification < email_text
3682	printf "\n *** email notification sent to \"$email_notification\" "
3683	fi
3684	fi
3685
3686
3687
3688	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3689	cd $HOME
3690	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3691
3692	else
3693
3694
3695	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3696	# CHENDE AKTIONEN DURCHGEFUEHRT
3697
3698	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3699	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -f $filetransfer_protocol -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3700	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3701	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3702	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3703	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3704	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3705	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3706	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3707	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3708	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3709	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3710	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3711	if [[ $use_openmp = true ]]
3712	then
3713	mrun_com=${mrun_com}" -O"
3714	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3715	else
3716	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3717	fi
3718	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3719	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3720	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3721	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3722	[[ $node_usage != default ]] && mrun_com=${mrun_com}" -n $node_usage"
3723	if [[ $do_remote = true ]]
3724	then
3725	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3726	fi
3727
3728
3729	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3730	jobfile=jobfile.$RANDOM
3731
3732
3733	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3734	echo "mkdir $TEMPDIR" >> $jobfile
3735	echo "cd $TEMPDIR" >> $jobfile
3736
3737
3738	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3739	if [[ $do_trace = true ]]
3740	then
3741	echo "set -x" >> $jobfile
3742	else
3743	echo "set +vx" >> $jobfile
3744	fi
3745
3746
3747	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3748	# SOWIE GEGEBENENFALLS DES MAKEFILES
3749	if [[ $do_compile = true ]]
3750	then
3751
3752	source_catalog=SOURCES_FOR_RUN_$fname
3753
3754	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3755	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3756	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3757	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3758	echo "export SOURCES_COMPLETE=true" >> $jobfile
3759	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3760
3761	for filename in $source_list
3762	do
3763	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3764	echo "cat > $filename << \"%END%\"" >> $jobfile
3765	cat $source_catalog/$filename >> $jobfile
3766	echo " " >> $jobfile
3767	echo "%END%" >> $jobfile
3768	echo " " >> $jobfile
3769	done
3770
3771	if [[ "$use_makefile" = true ]]
3772	then
3773	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3774	echo "cat > Makefile << \"%END%\"" >> $jobfile
3775	cat $source_catalog/Makefile >> $jobfile
3776	echo " " >> $jobfile
3777	echo "%END%" >> $jobfile
3778	echo " " >> $jobfile
3779	fi
3780
3781	echo "cd - > /dev/null" >> $jobfile
3782
3783	fi
3784
3785
3786	# ABSPEICHERN DER KONFIGURATIONSDATEI
3787	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3788	echo "cat > $config_file << \"%END%\"" >> $jobfile
3789	cat $config_file >> $jobfile
3790	echo "%END%" >> $jobfile
3791	echo " " >> $jobfile
3792
3793
3794	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3795	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3796	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3797	cat ${mrun_path}/$mrun_script_name >> $jobfile
3798	echo "%END%" >> $jobfile
3799	if [[ $host = lctit ]]
3800	then
3801	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3802	echo "mv mrun_new $mrun_script_name" >> $jobfile
3803	fi
3804	echo "chmod u+x $mrun_script_name" >> $jobfile
3805	echo "execute_mrun=true" >> $jobfile
3806	echo " " >> $jobfile
3807
3808	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3809	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3810	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3811	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3812	if [[ $do_remote = true ]]
3813	then
3814	(( i = 0 ))
3815	while (( i < iin ))
3816	do
3817	(( i = i + 1 ))
3818	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3819	if [[ "${transin[$i]}" = job ]]
3820	then
3821	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3822	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3823	echo " " >> $jobfile
3824	echo "%END%" >> $jobfile
3825	else
3826	if [[ $filetransfer_protocol = ftp ]]
3827	then
3828	echo "ftpcopy -b -o -g -s $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3829	else
3830	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3831	fi
3832	fi
3833
3834	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3835	echo "if [[ \$? = 1 ]]" >> $jobfile
3836	echo "then" >> $jobfile
3837	echo " echo \" \" " >> $jobfile
3838	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3839	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3840	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3841	echo " execute_mrun=false" >> $jobfile
3842	echo "fi" >> $jobfile
3843	done
3844	fi
3845
3846	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3847	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3848	echo "LOCAL_PWD=$working_directory" >> $jobfile
3849	echo "export LOCAL_PWD" >> $jobfile
3850
3851	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3852	echo "LOCAL_MRUN_PATH=$mrun_path" >> $jobfile
3853	echo "export LOCAL_MRUN_PATH" >> $jobfile
3854
3855	# echo "for_subjob_to_do=\"rm -rf $TEMPDIR\" " >> $jobfile
3856
3857	# MRUN AUF ZIELRECHNER AUFRUFEN
3858	echo "set -x" >> $jobfile
3859	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3860
3861	echo 'ls -al; echo `pwd`' >> $jobfile
3862	echo "cd \$HOME" >> $jobfile
3863	echo "rm -rf $TEMPDIR" >> $jobfile
3864
3865
3866
3867
3868	# JOB PER SUBJOB STARTEN
3869	if [[ $silent = false ]]
3870	then
3871	printf "\n "
3872	else
3873	printf "\n\n"
3874	fi
3875
3876	subjob $job_on_file -h $host -u $remote_username -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -f $filetransfer_protocol -v $jobfile
3877	rm -rf $jobfile
3878
3879
3880	fi # ENDE REMOTE-TEIL
3881
3882
3883
3884	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Download in other formats:

| Impressum | ©Leibniz Universität Hannover |