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source: palm/trunk/SCRIPTS/mrun @ 915

Last change on this file since 915 was 892, checked in by maronga, 12 years ago
bugfixes in parameter file check, adapted for lcxe6 (was lcxt4), new mrun.config parameter %login_init_cmd introduced
Property svn:keywords set to `Id Rev`
File size: 187.2 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 892 2012-05-02 13:51:44Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
254	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
255	# 21/03/12 - Matthias - default compiler on ibmh changed
256	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
257	# bugfixes for the parameter file check, initial
258	# commands on ssh calls sourced out to .mrun.config
259
260
261
262	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
263
264	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
265	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
266	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
267
268	AddFilenames=""
269	additional_conditions=""
270	add_source_path=""
271	afname=""
272	archive_save=true
273	archive_system=none
274	check_namelist_files=true
275	compiler_name=""
276	cond1=""
277	cond2=""
278	config_file=.mrun.config
279	coupled_dist=""
280	coupled_mode="mpi1"
281	cpp_opts=""
282	cpp_options=""
283	cpumax=0
284	cpurest=0
285	delete_temporary_catalog=true
286	do_batch=false
287	do_compile=true
288	do_remote=false
289	do_stagein=true
290	do_stageout=true
291	do_trace=false
292	email_notification="none"
293	exclude=""
294	executable=""
295	execution_error=false
296	fimm=false
297	fname=test
298	fromhost=""
299	global_revision=""
300	group_number=none
301	host=""
302	host_file=""
303	hp=""
304	ignore_archive_error=false
305	input_list=""
306	interpreted_config_file=""
307	job_catalog="~/job_queue"
308	job_on_file=""
309	keep_data_from_previous_run=false
310	link_local_input=false
311	link_local_output=false
312	localhost_realname=$(hostname)
313	local_compile=false
314	local_dvrserver_running=.FALSE.
315	locat=normal
316	mainprog=""
317	makefile=""
318	max_par_io_str=""
319	mc=$0
320	while [[ $(echo $mc \| grep -c "/") != 0 ]]
321	do
322	mc=`echo $mc \| cut -f2- -d"/"`
323	done
324	module_calls=""
325	mrun_script_name=$mc
326	netcdf_inc=""
327	netcdf_lib=""
328	netcdf_support=false
329	node_usage=default
330	numprocs=""
331	numprocs_atmos=0
332	numprocs_ocean=0
333	OOPT=""
334	openmp=false
335	output_list=""
336	package_list=""
337	punkte="..........................................................."
338	queue=none
339	read_from_config=""
340	restart_run=false
341	if [[ `hostname` = rte10 ]]
342	then
343	return_addres=133.5.185.60
344	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
345	elif [[ `hostname` = climate0 ]]
346	then
347	return_addres=165.132.26.68
348	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
349	else
350	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
351	fi
352	return_password=""
353	return_username=$LOGNAME
354	remotecall=false
355	remote_username=""
356	run_coupled_model=false
357	run_mode=""
358	scirocco=false
359	store_on_archive_system=false
360	striche=" ----------------------------------------------------------------------------"
361	silent=false
362	source_list=""
363	source_path=SOURCE
364	tasks_per_node=""
365	threads_per_task=1
366	tmpcreate=false
367	tmp_data_catalog=""
368	transfer_problems=false
369	usern=$LOGNAME
370	use_openmp=false
371	working_directory=`pwd`
372	TOPT=""
373	XOPT=""
374	zeit=$( date \| cut -c 12-19 )
375
376	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
377	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
378
379	typeset -R30 calltime
380	typeset -L20 spalte1
381	typeset -L40 spalte2
382	typeset -L60 spalte3
383	typeset -L35 string1=`date`
384	typeset -L12 string2=$usern
385	typeset -L12 string3=$localhost_realname
386	typeset -L12 string4
387	typeset -L12 string5
388	typeset -L30 version="MRUN 2.0 Rev$Rev: 892 $"
389
390
391
392	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
393	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
394
395	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
396	# EXPORTIERT WERDEN
397	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
398	export group_number input_list memory numprocs output_list queue run_mode
399
400
401
402	# FEHLERBEHANDLUNG
403	# BEI EXIT:
404	trap 'rm -rf $working_directory/tmp_mrun
405	if [[ $locat != localhost ]]
406	then
407	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
408	# then
409	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
410	#MRUN-calls on $localhost
411	#
412	#date and time user localhost remotehost termination mrun-command
413	#--------------------------------------------------------------------------------------------------------------------
414	#%STATEND%
415	# chmod 666 ${mrun_path}/statistik/mrun_statistik
416	# fi
417	#
418	# # EINTRAG IN DIE STATISTIK-DATEI
419	# string4=$host
420	# string5=$locat
421	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
422	# then
423	# if [[ $do_batch = true ]]
424	# then
425	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
426	# else
427	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
428	# fi
429	# fi
430	echo " " > /dev/null
431	fi
432
433	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
434	then
435
436	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
437	(( i = 0 ))
438	while (( i < iec ))
439	do
440	(( i = i + 1 ))
441	printf "\n *** Execution of ERROR-command:\n"
442	printf " >>> ${err_command[$i]}\n"
443	eval ${err_command[$i]}
444	done
445	if [[ -n $interpreted_config_file ]] then
446	rm -rf $interpreted_config_file
447	fi
448	if [[ -n .mrun_environment ]] then
449	rm -rf .mrun_environment
450	fi
451	if [[ $tmpcreate = true ]]
452	then
453	printf "\n *** Contents of \"$TEMPDIR\":\n"
454	ls -al; cd
455	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
456	fi
457	if [[ "$dvrserver_id" != "" ]]
458	then
459	echo "+++ killing dvrserver_id=$dvrserver_id"
460	kill $dvrserver_id
461	fi
462	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
463	then
464	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
465	fi
466	printf "\n\n+++ MRUN killed \n\n"
467	elif [[ $locat != control_c ]]
468	then
469	printf "\n\n --> all actions finished\n\n"
470	printf " Bye, bye $usern !!\n\n"
471	fi' exit
472
473
474	# BEI TERMINAL-BREAK:
475	trap 'rm -rf $working_directory/tmp_mrun
476	rm -rf $working_directory/tmp_check_namelist_files
477	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
478	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
479	then
480	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
481	fi
482	if [[ "$dvrserver_id" != "" ]]
483	then
484	echo "+++ killing dvrserver_id=$dvrserver_id"
485	kill $dvrserver_id
486	fi
487	printf "\n+++ MRUN killed by \"^C\" \n\n"
488	locat=control_c
489	exit
490	' 2
491
492
493	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
494	# BEEN SET
495	if [[ "$PALM_BIN" = "" ]]
496	then
497	printf "\n +++ environment variable PALM_BIN has not been set"
498	printf "\n please set it to the directory where the PALM scripts are located"
499	locat=palm_bin; exit
500	fi
501	export PATH=$PALM_BIN:$PATH
502
503
504
505	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
506	# FUER FOLGEJOBS BENOETIGT WIRD
507	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
508	do
509	case $option in
510	(a) afname=$OPTARG;;
511	(A) store_on_archive_system=true; mc="$mc -A";;
512	(b) do_batch=true; mc="$mc -b";;
513	(B) delete_temporary_catalog=false; mc="$mc -B";;
514	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
515	(C) restart_run=true; mc="$mc -C";;
516	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
517	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
518	(F) job_on_file="-D"; mc="$mc -F";;
519	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
520	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
521	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
522	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
523	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
524	(I) ignore_archive_error=true; mc="$mc -I";;
525	(k) keep_data_from_previous_run=true; mc="$mc -k";;
526	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
527	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
528	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
529	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
530	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
531	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
532	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
533	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
534	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
535	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
536	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
537	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
538	(S) read_from_config=false; mc="$mc -S";;
539	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
540	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
541	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
542	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
543	(v) silent=true; mc="$mc -v";;
544	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
545	(x) do_trace=true;set -x; mc="$mc -x";;
546	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
547	(y) ocean_file_appendix=true; mc="$mc -y";;
548	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
549	(z) check_namelist_files=false; mc="$mc -z";;
550	(\?) printf "\n +++ unknown option $OPTARG \n"
551	printf "\n --> type \"$0 ?\" for available options \n"
552	locat=parameter;exit;;
553	esac
554	done
555
556
557	# EVTL. POSITIONSPARAMETER EINLESEN
558	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
559	shift OPTIND-1
560
561
562	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
563	if [[ "$1" = "?" ]]
564	then
565	(printf "\n *** mrun can be called as follows:\n"
566	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
567	printf "\n Description of available options:\n"
568	printf "\n Option Description Default-Value"
569	printf "\n -a base name of input files equiv. -d"
570	printf "\n -A archiving when using file-attribute fl"
571	printf "\n -b batch-job on local machine ---"
572	printf "\n -B do not delete temporary directory at end ---"
573	printf "\n -c configuration file .mrun.config"
574	printf "\n -d base name of files attached to program test"
575	printf "\n -D preprocessor(cpp)-directives \"\" "
576	printf "\n -F create remote job file only ---"
577	printf "\n -h execution host $localhost_realname"
578	printf "\n -i INPUT control list \"\" "
579	printf "\n -I archiving errors of previous batch-jobs"
580	printf "\n will be ignored"
581	printf "\n -k keep data from previous run"
582	printf "\n -K additional conditions for controling"
583	printf "\n usage of conditional code and"
584	printf "\n env-variables in configuration file \"\" "
585	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
586	printf "\n -M Makefile name Makefile"
587	printf "\n -n node usage (shared/not_shared) depending on -h"
588	printf "\n -o OUTPUT control list \"\" "
589	printf "\n -O use OpenMP ---"
590	printf "\n -p software package list \"\" "
591	printf "\n -q queue \"$queue\" "
592	printf "\n -r run control list (combines -i -o) \"\" "
593	printf "\n -s filenames of routines to be compiled \"\" "
594	printf "\n must end with .f, .f90, .F, or .c !"
595	printf "\n use \"..\" for more than one file and wildcards"
596	printf "\n -s LM compiles all locally modified files"
597	printf "\n -S config file interpreted by shellscript ---"
598	printf "\n -t allowed cpu-time in seconds (batch) 0"
599	printf "\n -T tasks per node depending on -h"
600	printf "\n -u username on remote machine \"\" "
601	printf "\n -v no prompt for confirmation ---"
602	printf "\n -w maximum parallel io streams as given by -X"
603	printf "\n -x tracing of mrun for debug purposes ---"
604	printf "\n -X # of processors (on parallel machines) 1"
605	printf "\n -y add appendix \"_O\" to all local output"
606	printf "\n files (ocean precursor runs followed by"
607	printf "\n coupled atmosphere-ocean runs) ---"
608	printf "\n -Y run coupled model, \"#1 #2\" with"
609	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
610	printf "\n -z no parameter file check ---"
611	printf "\n "
612	printf "\n Possible values of positional parameter <modus>:"
613	printf "\n \"?\" - this outline \n\n") \| more
614	exit
615	elif [[ "$1" != "" ]]
616	then
617	printf "\n +++ positional parameter $1 unknown \n"
618	locat=parameter; exit
619	fi
620
621
622
623	# KURZE STARTMELDUNG
624	printf "\n*** $version "
625	printf "\n will be executed. Please wait ..."
626
627
628
629	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
630	if [[ ! -f $config_file ]]
631	then
632	printf "\n\n +++ configuration file: "
633	printf "\n $config_file"
634	printf "\n does not exist"
635	locat=connect; exit
636	fi
637
638
639	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
640	line=""
641	grep "%host_identifier" $config_file > tmp_mrun
642	while read line
643	do
644	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
645	then
646	HOSTNAME=`echo $line \| cut -d" " -s -f2`
647	host_identifier=`echo $line \| cut -d" " -s -f3`
648	if [[ $localhost_realname = $HOSTNAME ]]
649	then
650	localhost=$host_identifier
651	break
652	fi
653	fi
654	done < tmp_mrun
655
656	if [[ "$localhost" = "" ]]
657	then
658	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
659	printf "\n for local host \"$localhost_realname\"."
660	printf "\n Please add line"
661	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
662	printf "\n to the configuration file."
663	locat=localhost; exit
664	fi
665
666
667	# HOSTSPEZIFISCHE VARIABLEN SETZEN
668	case $localhost_realname in
669	(r1\|r2\|h01\|b01) archive_system=tivoli;;
670	(cs*) archive_system=ut;;
671	(fimm.bccs.uib.no) fimm=true;;
672	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
673	(scirocco) scirocco=true;;
674	esac
675
676
677
678	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
679	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
680	[[ "$afname" = "" ]] && afname=$fname
681
682
683	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
684	if [[ "$run_mode" != "" ]]
685	then
686	input_list="$input_list $run_mode"
687	output_list="$output_list $run_mode"
688	fi
689
690
691	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
692	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
693	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
694	# STARTET)
695	if [[ "$fromhost" = "" ]]
696	then
697	fromhost=$localhost
698	fi
699
700
701	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
702	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
703	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
704	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
705	if [[ -n $host && "$host" != $localhost ]]
706	then
707	do_batch=true
708	do_remote=true
709	case $host in
710	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
711	(*) printf "\n"
712	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
713	printf "\n is not available"
714	locat=nqs; (( iec = 0 )); exit;;
715	esac
716	else
717	host=$localhost
718	fi
719
720
721	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
722	if [[ -n $additional_conditions ]]
723	then
724	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
725	cond1=`echo $additional_conditions \| cut -d" " -f1`
726	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
727	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
728	if [[ -n $dummy ]]
729	then
730	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
731	locat=options; exit
732	fi
733	block=_$cond1
734	[[ -n $cond2 ]] && block=${block}_$cond2
735	fi
736
737
738	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
739	if [[ $run_coupled_model = true ]]
740	then
741
742	if [[ -n $coupled_dist ]]
743	then
744
745	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
746	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
747
748	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
749	then
750
751	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
752	printf "\n PEs (total) : $numprocs"
753	printf "\n PEs (atmosphere): $numprocs_atmos"
754	printf "\n PEs (ocean) : $numprocs_ocean"
755	locat=coupling; exit
756
757	fi
758
759	else
760
761	(( numprocs_ocean = $numprocs / 2 ))
762	(( numprocs_atmos = $numprocs / 2 ))
763
764	fi
765	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
766
767	# GET coupled_mode FROM THE CONFIG FILE
768	line=""
769	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
770	while read line
771	do
772	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
773	then
774	coupled_mode="mpi2"
775	fi
776	done < tmp_mrun
777
778	fi
779
780
781	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
782	# ARCHIVIERUNG FEHLGESCHLAGEN IST
783	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
784	then
785	if [[ $ignore_archive_error = false ]]
786	then
787	printf "\n +++ data archiving of previous run failed"
788	printf "\n see directory \~/job_queue on remote machine"
789	locat=archive; exit
790	else
791	printf "\n +++ warning: data archiving in a previous run failed"
792	printf "\n MRUN continues, trying to get backup copy"
793	fi
794	fi
795
796
797
798	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
799	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
800	if [[ "$read_from_config" = false ]]
801	then
802
803	[[ $silent = false ]] && printf "\n Reading the configuration file... "
804	while read zeile
805	do
806	[[ $silent = false ]] && printf "."
807
808
809	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
810	# ERSETZEN
811	eval zeile=\"$zeile\"
812
813
814	# INTERPRETATION DER ZEILE
815	if [[ "$(echo $zeile)" = "" ]]
816	then
817	# LEERZEILE, KEINE AKTION
818	continue
819
820	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
821	then
822
823	# ZEILE IST KOMMENTARZEILE
824	true
825
826	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
827	then
828
829	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
830	zeile=$(echo $zeile \| cut -c2-)
831	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
832	var=`echo $zeile \| cut -d" " -f1`
833	value=`echo $zeile \| cut -d" " -s -f2`
834	for_host=`echo $zeile \| cut -d" " -s -f3`
835	for_cond1=`echo $zeile \| cut -d" " -s -f4`
836	for_cond2=`echo $zeile \| cut -d" " -s -f5`
837
838	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
839	then
840
841	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
842	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
843	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
844
845
846	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
847	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
848	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
849	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
850	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
851	# KONFIGURATIONSDATEI
852	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
853	then
854	eval $var=\$value
855
856	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
857	if [[ $do_trace = true ]]
858	then
859	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
860	fi
861	fi
862
863	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
864	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
865	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
866	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
867	if [[ $var = host ]]
868	then
869	if [[ -n $host && "$host" != $localhost ]]
870	then
871	do_batch=true
872	do_remote=true
873	case $host in
874	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
875	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
876	printf "\n is not available"
877	locat=nqs; exit;;
878	esac
879	else
880	host=$localhost
881	fi
882	fi
883
884	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
885	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
886	# DEN PROGRAMMEN BENOETIGT WERDEN
887	export $var
888	fi
889
890
891
892
893	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
894	then
895
896	# ZEILE DEFINIERT ERROR-KOMMANDO
897	(( iec = iec + 1 ))
898	zeile=$(echo $zeile \| cut -c4-)
899	err_command[$iec]="$zeile"
900
901	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
902	then
903
904	# ZEILE DEFINIERT INPUT-KOMMANDO
905	(( iic = iic + 1 ))
906	zeile=$(echo $zeile \| cut -c4-)
907	in_command[$iic]="$zeile"
908
909	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
910	then
911
912	# ZEILE DEFINIERT OUTPUT-KOMMANDO
913	(( ioc = ioc + 1 ))
914	zeile=$(echo $zeile \| cut -c4-)
915	out_command[$ioc]="$zeile"
916
917	else
918
919	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
920	# s2a: in/out - Feld
921	# s2b: loc - Feld (optional)
922	# s2c: tr/ar - Feld (optional)
923	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
924	s1=`echo $zeile \| cut -d" " -f1`
925	s2=`echo $zeile \| cut -d" " -s -f2`
926	s2a=$(echo $s2 \| cut -d":" -f1)
927	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
928	then
929	s2b=""
930	s2c=""
931	else
932	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
933	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
934	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
935	fi
936	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
937	s3=`echo $zeile \| cut -d" " -f3`
938	s4=`echo $zeile \| cut -d" " -s -f4`
939	s5=`echo $zeile \| cut -d" " -s -f5`
940	s6=`echo $zeile \| cut -d" " -s -f6`
941
942
943	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
944	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
945	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
946	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
947	# HANDEN SEIN MUSS (D.H. s2b = loc)
948	IFSALT="$IFS"; IFS="$IFS:"
949	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
950	then
951	found=false
952	for actual in $input_list
953	do
954	for formal in $s3
955	do
956	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
957	done
958	done
959	if [[ $found = true ]]
960	then
961	(( iin = iin + 1 ))
962	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
963	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
964	extin[$iin]=$s6
965	fi
966	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
967	then
968	found=false
969	for actual in $output_list
970	do
971	for formal in $s3
972	do
973	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
974	done
975	done
976	if [[ $found = true ]]
977	then
978	(( iout = iout + 1 ))
979	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
980	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
981	fi
982	elif [[ "$s2a" != in && "$s2a" != out ]]
983	then
984	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
985	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
986	locat=connect; exit
987	fi
988	IFS="$IFSALT"
989	fi
990	done < $config_file
991
992	else
993
994
995	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
996	[[ $silent = false ]] && printf "..."
997	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
998	export interpreted_config_file=.icf.$RANDOM
999
1000
1001
1002	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1003	# VERFUEGUNG STELLEN
1004	cat > .mrun_environment << %%END%%
1005	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1006	config_file = '$config_file', do_remote = '$do_remote',
1007	do_trace = '$do_trace', host = '$host',
1008	input_list = '$input_list', icf = '$interpreted_config_file',
1009	localhost = '$localhost', output_list = '$output_list' /
1010
1011	%%END%%
1012
1013	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1014	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1015	mrun_memory=$memory
1016	mrun_group_number=$group_number
1017	mrun_cpumax=$cpumax
1018	mrun_numprocs=$numprocs
1019
1020	if [[ $localhost_realname = "sx-fep" ]]
1021	then
1022	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1023	else
1024
1025	if [[ "$host" != $localhost ]]
1026	then
1027
1028	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1029	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1030	if [[ $? != 0 ]]
1031	then
1032	printf "\n\n +++ no interpret_config found"
1033	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1034	locat=interpret_config; exit
1035	fi
1036	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1037	$interpret_config_executable
1038
1039	else
1040
1041	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1042	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1043	then
1044	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1045	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1046	locat=interpret_config; exit
1047	else
1048	interpret_config${block}.x
1049	fi
1050
1051	fi
1052	fi
1053	rm .mrun_environment
1054
1055
1056	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1057	chmod u+x $interpreted_config_file
1058	export PATH=$PATH:.
1059	. $interpreted_config_file
1060	rm $interpreted_config_file
1061
1062
1063	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1064	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1065	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1066	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1067	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1068	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1069	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1070
1071	fi
1072
1073
1074	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1075	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1076	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1077	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1078	if [[ "$SOURCES_COMPLETE" = "" ]]
1079	then
1080
1081	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1082	# VEREINBART WURDE
1083	source_path=""
1084	line=""
1085	grep "%source_path" $config_file > tmp_mrun
1086	while read line
1087	do
1088	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1089	then
1090	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1091	then
1092	global_source_path=`echo $line \| cut -d" " -f2`
1093	fi
1094	fi
1095	done < tmp_mrun
1096
1097	line=""
1098	found=false
1099	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1100	while read line
1101	do
1102	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1103	then
1104	if [[ $found = true ]]
1105	then
1106	printf "\n\n +++ more than one source path found in configuration file"
1107	printf "\n for local host \"$localhost\" "
1108	locat=source_path; exit
1109	fi
1110	source_path=`echo $line \| cut -d" " -f2`
1111	found=true
1112	fi
1113	done < tmp_mrun
1114	rm tmp_mrun
1115
1116	if [[ "$source_path" = "" ]]
1117	then
1118	if [[ "$global_source_path" != "" ]]
1119	then
1120	source_path=$global_source_path
1121	else
1122	printf "\n\n +++ no source path found in configuration file"
1123	printf "\n for local host \"$localhost\" "
1124	locat=source_path; exit
1125	fi
1126	fi
1127	eval source_path=$source_path
1128
1129	if [[ ! -d $source_path ]]
1130	then
1131	printf "\n\n +++ source path \"$source_path\" on local host"
1132	printf "\n \"$localhost\" does not exist"
1133	locat=source_path; exit
1134	fi
1135
1136	fi
1137
1138
1139	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1140	# DURCH OPTION -G MITGETEILT)
1141	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1142	then
1143	global_revision=`svnversion $source_path 2>/dev/null`
1144	global_revision="Rev: $global_revision"
1145	fi
1146
1147
1148	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1149	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1150	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1151	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1152	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1153	if [[ -n $host && "$host" != $localhost ]]
1154	then
1155	do_batch=true
1156	do_remote=true
1157	case $host in
1158	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckordi) true;;
1159	(*) printf "\n"
1160	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1161	printf "\n is not available"
1162	locat=nqs; (( iec = 0 )); exit;;
1163	esac
1164	else
1165	host=$localhost
1166	fi
1167
1168
1169	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1170	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1171	then
1172
1173	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1174	if [[ ! -n $numprocs ]]
1175	then
1176	printf "\n"
1177	printf "\n +++ option \"-K parallel\" requires additional specification"
1178	printf "\n of the number of processors to be used by"
1179	printf "\n mrun-option \"-X\" or by environment-variable"
1180	printf "\n \"numprocs\" in the configuration file"
1181	locat=numprocs; (( iec = 0 )); exit
1182	fi
1183
1184	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1185	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1186	# GESAMTPROZESSORANZAHL IST
1187	if [[ "$tasks_per_node" = "" && $host != lcflow ]]
1188	then
1189	printf "\n"
1190	printf "\n +++ option \"-T\" (tasks per node) is missing"
1191	printf "\n set -T option or define tasks_per_node in the config file"
1192	locat=tasks_per_node; (( iec = 0 )); exit
1193	fi
1194	if [[ $host != lcflow ]]
1195	then
1196	(( ival = $tasks_per_node ))
1197	(( pes = numprocs ))
1198	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1199	# then
1200	# (( pes = pes - 1 ))
1201	# fi
1202	(( ii = pes / ival ))
1203	if (( pes - ii * ival > 0 ))
1204	then
1205	printf "\n"
1206	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1207	printf "\n divisor of the total number of processors (option \"-X\")"
1208	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1209	locat=tasks_per_node; (( iec = 0 )); exit
1210	fi
1211	fi
1212
1213
1214	# IBMY HAT NUR EINEN KNOTEN
1215	if [[ $host = ibmy ]]
1216	then
1217	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1218	then
1219	printf "\n"
1220	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1221	printf "\n total number of processors (option \"-X\")"
1222	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1223	locat=tasks_per_node; (( iec = 0 )); exit
1224	fi
1225	fi
1226
1227
1228	# SETTINGS FOR SUBJOB-COMMAND
1229	TOPT="-T $tasks_per_node"
1230	OOPT="-O $threads_per_task"
1231
1232	# GESAMTZAHL DER KNOTEN BESTIMMEN
1233	if [[ "$tasks_per_node" != "" ]]
1234	then
1235	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1236	fi
1237
1238	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1239	# SETZEN
1240	if [[ $node_usage = default ]]
1241	then
1242	if [[ $host = ibms ]]
1243	then
1244	node_usage=shared
1245	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1246	then
1247	node_usage=singlejob
1248	else
1249	node_usage=not_shared
1250	fi
1251	fi
1252
1253	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1254	then
1255	printf "\n"
1256	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1257	printf "\n \"shared\" or \"not_shared\""
1258	locat=tasks_per_node; (( iec = 0 )); exit
1259	fi
1260
1261	fi
1262
1263	# PRUEFEN, OB HOSTFILE EXISTIERT
1264	if [[ -n $hostfile ]]
1265	then
1266	if [[ ! -f $hostfile ]]
1267	then
1268	printf "\n"
1269	printf "\n +++ hostfile \"$hostfile\" does not exist"
1270	locat=hostfile; exit
1271	fi
1272	fi
1273
1274	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1275	if [[ $host = ibmy && $do_remote = false ]]
1276	then
1277	if [[ ! -f $HOME/.rhosts ]]
1278	then
1279	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1280	printf "\n\n *** file:"
1281	printf "\n $HOME/.rhosts"
1282	printf "\n was created\n"
1283	fi
1284	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1285	then
1286	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1287	printf "\n\n *** file:"
1288	printf "\n $HOME/.rhosts"
1289	printf "\n was extended by the name of the current host\n"
1290	fi
1291	fi
1292
1293
1294	# Set default value for the maximum number of parallel io streams
1295	if [[ "$maximum_parallel_io_streams" = "" ]]
1296	then
1297	maximum_parallel_io_streams=$numprocs
1298	fi
1299
1300
1301	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1302	if [[ $queue = none ]]
1303	then
1304	case $host in
1305	(ibmh) queue=no_class;;
1306	(ibmkisti) queue=class.32plus;;
1307	(ibmy) queue=parallel;;
1308	(lckyoto) queue=ph;;
1309	(lcsgib) queue=testq;;
1310	(lcsgih) queue=testq;;
1311	(lctit) queue=S;;
1312	(nech) queue=none;;
1313	(necriam) queue=SP;;
1314	(unics) queue=unics;;
1315	esac
1316	fi
1317
1318
1319	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1320	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1321	# ERMITTELN
1322	(( i = 0 ))
1323	while (( i < iin ))
1324	do
1325	(( i = i + 1 ))
1326	(( maxcycle = 0 ))
1327
1328	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1329	if [[ "${actionin[$i]}" = di ]]
1330	then
1331	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1332	# REM-MASCHINE AUSWERTEN
1333	eval filename=${pathin[$i]}/${endin[$i]}
1334	else
1335	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1336	# REM-MASCHINE AUSWERTEN
1337	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1338	fi
1339	eval pathname=${pathin[$i]}
1340
1341
1342	# PRUEFEN AUF VORHANDENSEIN
1343	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1344	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1345	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1346	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1347	then
1348	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1349	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1350	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1351	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1352	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1353	if [[ "${transin[$i]}" != "locopt" ]]
1354	then
1355	printf "\n\n +++ INPUT-file: "
1356	if [[ "${extin[$i]}" = "" ]]
1357	then
1358	printf "\n $filename"
1359	else
1360	printf "\n $filename.${extin[$i]}"
1361	fi
1362	printf "\n does not exist\n"
1363	locat=input; exit
1364	else
1365	transin[$i]="unavailable"
1366	fi
1367	else
1368
1369	# ZYKLUSNUMMER FESTSTELLEN
1370	ls -1 -d $filename > filelist 2>/dev/null
1371	ls -1 -d $filename.* >> filelist 2>/dev/null
1372	while read zeile
1373	do
1374	cycle=$(print $zeile \| cut -f2 -d".")
1375	if [[ "$cycle" = "$zeile" ]]
1376	then
1377	(( icycle = 0 ))
1378	elif [[ "$cycle" = "${extin[$i]}" ]]
1379	then
1380	(( icycle = 0 ))
1381	else
1382	(( icycle = $cycle ))
1383	fi
1384	if (( icycle > maxcycle ))
1385	then
1386	(( maxcycle = icycle ))
1387	file_to_be_used=$zeile
1388	fi
1389	done <filelist
1390	rm filelist
1391
1392	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1393	if (( maxcycle > 0 ))
1394	then
1395	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1396	then
1397	filename=${filename}.$maxcycle.${extin[$i]}
1398	else
1399	filename=${filename}.$maxcycle
1400	fi
1401	else
1402	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1403	then
1404	filename=${filename}.${extin[$i]}
1405	fi
1406	fi
1407
1408	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1409	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1410	absnamein[$i]=$filename
1411	if (( maxcycle > 0 ))
1412	then
1413	if [[ "${actionin[$i]}" = di ]]
1414	then
1415	frelin[$i]=${endin[$i]}.$maxcycle
1416	else
1417	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1418	fi
1419	else
1420	if [[ "${actionin[$i]}" = di ]]
1421	then
1422	frelin[$i]=${endin[$i]}
1423	else
1424	frelin[$i]=${afname}${endin[$i]}
1425	fi
1426	fi
1427
1428	fi
1429	done
1430
1431
1432	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1433	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1434	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1435	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1436	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1437	(( i = 0 ))
1438	while (( i < iout ))
1439	do
1440	(( i = i + 1 ))
1441	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1442	then
1443	if [[ "${actionout[$i]}" = tr ]]
1444	then
1445	actionout[$i]=""
1446	elif [[ "${actionout[$i]}" = trpe ]]
1447	then
1448	actionout[$i]=pe
1449	elif [[ "${actionout[$i]}" = tra ]]
1450	then
1451	actionout[$i]=a
1452	fi
1453	(( maxcycle = 0 ))
1454	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1455	eval catalogname=${pathout[$i]}
1456	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1457	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1458	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1459	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1460	then
1461
1462	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1463	if cat /dev/null > $filename
1464	then
1465	rm $filename
1466	else
1467
1468	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1469	if [[ ! -d $catalogname ]]
1470	then
1471	if mkdir -p $catalogname
1472	then
1473	printf "\n\n *** directory:"
1474	printf "\n $catalogname"
1475	printf "\n was created\n"
1476	else
1477	printf "\n\n +++ OUTPUT-file:"
1478	printf "\n $filename"
1479	printf "\n cannot be created, because directory does not exist"
1480	printf "\n and cannot be created either"
1481	printf "\n"
1482	locat=output ; exit
1483	fi 2>/dev/null
1484	else
1485	printf "\n\n +++ OUTPUT-file:"
1486	printf "\n $filename"
1487	printf "\n cannot be created, although directory exists"
1488	printf "\n"
1489	locat=output ; exit
1490	fi
1491	fi 2>/dev/null
1492	else
1493
1494	# ZYKLUSNUMMER FESTSTELLEN
1495	ls -1 -d $filename > filelist 2>/dev/null
1496	ls -1 -d $filename.* >> filelist 2>/dev/null
1497	while read zeile
1498	do
1499	cycle=$(print $zeile \| cut -f2 -d".")
1500	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1501	then
1502	(( icycle = 1 ))
1503	else
1504	(( icycle = $cycle + 1 ))
1505	fi
1506	if (( icycle > maxcycle ))
1507	then
1508	(( maxcycle = icycle ))
1509	fi
1510	done <filelist
1511	rm filelist
1512	fi
1513
1514	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1515	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1516	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1517	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1518	if [[ "${actionout[$i]}" != a ]]
1519	then
1520	if (( maxcycle > 0 ))
1521	then
1522	filename=${filename}.$maxcycle
1523	if cat /dev/null > $filename
1524	then
1525	rm $filename
1526	else
1527	printf "\n +++ OUTPUT-file:"
1528	printf "\n $filename"
1529	printf "\n cannot be created"
1530	locat=output ; exit
1531	fi
1532	fi
1533	else
1534	(( maxcycle = maxcycle - 1 ))
1535	if (( maxcycle > 0 ))
1536	then
1537	filename=${filename}.$maxcycle
1538	fi
1539	fi
1540
1541	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1542	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1543	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1544	pathout[$i]=$filename
1545	if (( maxcycle > 0 ))
1546	then
1547	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1548	else
1549	frelout[$i]=${fname}${endout[$i]}
1550	fi
1551
1552	fi
1553	done
1554
1555
1556	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1557	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1558	then
1559	if [[ "$dvr_inc" = "" ]]
1560	then
1561	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1562	printf "\n This is required for the dvrp_graphics package.\n"
1563	locat=dvr; exit
1564	fi
1565	if [[ "$dvr_lib" = "" ]]
1566	then
1567	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1568	printf "\n This is required for the dvrp_graphics package.\n"
1569	locat=dvr; exit
1570	fi
1571	fi
1572
1573
1574	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1575	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1576	# UEBERSETZT ZU WERDEN)
1577	if [[ "$mainprog" = "" && "$executable" = "" ]]
1578	then
1579	printf "\n +++ neither main program nor executable defined"
1580	locat=source; exit
1581	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1582	then
1583	printf "\n +++ main program as well as executable defined"
1584	locat=source; exit
1585	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1586	then
1587	do_compile=false
1588	fi
1589
1590
1591	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1592	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1593	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1594	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1595	then
1596	rm -rf SOURCES_FOR_RUN_$fname
1597	mkdir SOURCES_FOR_RUN_$fname
1598	fi
1599
1600
1601	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1602	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1603	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1604	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1605	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1606	then
1607
1608	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1609
1610	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1611	then
1612
1613	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1614	source_list=""
1615	cd $source_path
1616
1617
1618	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1619	if [[ ! -d .svn ]]
1620	then
1621	printf "\n\n +++ source directory"
1622	printf "\n \"$source_path\" "
1623	printf "\n is not under control of \"subversion\"."
1624	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1625	fi
1626
1627
1628	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1629	Filenames=""
1630	svn status > tmp_mrun
1631	while read line
1632	do
1633	firstc=`echo $line \| cut -c1`
1634	if [[ $firstc = M \|\| $firstc = "?" ]]
1635	then
1636	Name=`echo "$line" \| cut -c8-`
1637	extension=`echo $Name \| cut -d. -f2`
1638	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1639	then
1640	Filenames="$Filenames "$Name
1641	fi
1642	fi
1643	done < tmp_mrun
1644
1645
1646	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1647	for dateiname in $Filenames
1648	do
1649	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1650	source_list=$source_list"$dateiname "
1651	done
1652
1653	cd - > /dev/null
1654
1655
1656	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1657	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1658	# VORHANDEN
1659	elif [[ "$source_list" != "" && $restart_run != true ]]
1660	then
1661
1662	cd $source_path
1663
1664	for filename in $source_list
1665	do
1666
1667	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1668	if [[ $(print $filename \| grep -c "/") != 0 ]]
1669	then
1670	printf "\n +++ source code file: $filename"
1671	printf "\n must not contain (\"/\") "
1672	locat=source; exit
1673	fi
1674
1675	if [[ ! -f $filename ]]
1676	then
1677	printf "\n +++ source code file: $filename"
1678	printf "\n does not exist"
1679	locat=source; exit
1680	else
1681	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1682	fi
1683
1684	done
1685
1686	cd - > /dev/null
1687
1688	fi
1689
1690
1691	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1692	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1693	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1694	if [[ $restart_run != true ]]
1695	then
1696
1697	if [[ ! -f "$source_path/$mainprog" ]]
1698	then
1699	printf "\n\n +++ main program: $mainprog"
1700	printf "\n does not exist in source directory"
1701	printf "\n \"$source_path\"\n"
1702	locat=source; exit
1703	else
1704	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1705	then
1706	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1707	source_list=${mainprog}" $source_list"
1708	fi
1709	fi
1710	fi
1711
1712
1713	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1714	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1715	if [[ "$restart_run" != true ]]
1716	then
1717	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1718	if [[ ! -f $makefile ]]
1719	then
1720	printf "\n +++ file \"$makefile\" does not exist"
1721	locat=make; exit
1722	else
1723	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1724	fi
1725	fi
1726
1727
1728	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1729	if [[ $restart_run != true && "$add_source_path" != "" ]]
1730	then
1731
1732	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1733	if [[ ! -d $add_source_path ]]
1734	then
1735	printf "\n\n +++ WARNING: additional source code directory"
1736	printf "\n \"$add_source_path\" "
1737	printf "\n does not exist or is not a directory."
1738	printf "\n No source code will be used from this directory!\n"
1739	add_source_path=""
1740	sleep 3
1741	else
1742
1743	cd $add_source_path
1744	found=false
1745
1746	Names=$(ls -1 *.f90 2>&1)
1747	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1748	Names=$(ls -1 *.F90 2>&1)
1749	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1750	Names=$(ls -1 *.F 2>&1)
1751	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1752	Names=$(ls -1 *.f 2>&1)
1753	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1754	Names=$(ls -1 *.c 2>&1)
1755	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1756
1757	cd - > /dev/null
1758	cd SOURCES_FOR_RUN_$fname
1759
1760	# COPY MAKEFILE IF EXISTING
1761	if [[ -f $add_source_path/Makefile ]]
1762	then
1763	printf "\n\n *** user Makefile from directory"
1764	printf "\n \"$add_source_path\" is used \n"
1765	sleep 1
1766	cp $add_source_path/Makefile .
1767	fi
1768
1769	for dateiname in $AddFilenames
1770	do
1771	if [[ -f $dateiname ]]
1772	then
1773	printf "\n +++ source code file \"$dateiname\" found in additional"
1774	printf "\n source code directory \"$add_source_path\" "
1775	printf "\n but was also given with option \"-s\" which means that it should be taken"
1776	printf "\n from directory \"$source_path\"."
1777	locat=source; exit
1778	fi
1779
1780	cp $add_source_path/$dateiname .
1781	source_list="$source_list $dateiname"
1782
1783	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1784	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1785	then
1786	printf "\n\n +++ user file \"$dateiname\" "
1787	printf "\n is not listed in Makefile \n"
1788	locat=source; exit
1789	else
1790
1791	# Default User-Interface von der Liste entfernen, falls Datei
1792	# ein User-Interface enthaelt
1793	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1794	# then
1795	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1796	# then
1797	# rm -rf user_interface.f90
1798	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1799	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1800	# printf "\n since a user-interface is found in file"
1801	# printf "\n \"$add_source_path/$dateiname\" \n"
1802	# sleep 3
1803	# else
1804	if [[ $found = false ]]
1805	then
1806	found=true
1807	printf "\n\n *** following user file(s) added to the"
1808	printf " files to be translated:\n "
1809	fi
1810	printf "$dateiname "
1811	sleep 0.5
1812	fi
1813	done
1814	[[ $found = true ]] && printf "\n"
1815	cd - > /dev/null
1816	fi
1817	fi
1818
1819
1820	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1821	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1822	if [[ $restart_run != true && -n $package_list ]]
1823	then
1824
1825	cd $source_path
1826
1827	for package in $package_list
1828	do
1829
1830	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1831
1832	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1833	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1834	# LIEFERT
1835	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1836
1837
1838	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1839	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1840	for source_list_name in $package_source_list
1841	do
1842	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1843	then
1844
1845	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1846	ending=`echo $source_list_name \| cut -f2 -d.`
1847	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1848	then
1849	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1850	source_list="$source_list $source_list_name"
1851	fi
1852	fi
1853	done
1854	done
1855
1856	cd - > /dev/null
1857	fi
1858
1859
1860	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1861	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1862	# if [[ "$restart_run" != true ]]
1863	# then
1864	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1865	# if [[ ! -f $makefile ]]
1866	# then
1867	# printf "\n +++ file \"$makefile\" does not exist"
1868	# locat=make; exit
1869	# else
1870	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1871	# fi
1872	# fi
1873
1874	fi # do_compile=true
1875
1876
1877	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1878	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1879	if [[ $do_compile = true ]]
1880	then
1881
1882	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1883	# ZUSAMMENSETZEN
1884	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1885	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1886	then
1887	cpp_options="${cpp_options},-D__ibm=__ibm"
1888	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1889	then
1890	cpp_options="$cpp_options -D__nec"
1891	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1892	then
1893	cpp_options="$cpp_options -D__lc"
1894	else
1895	cpp_options="$cpp_options -D__$localhost"
1896	fi
1897
1898	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1899	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1900	then
1901	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1902	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1903	else
1904	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1905	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1906	fi
1907
1908	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1909	if [[ -n $package_list ]]
1910	then
1911	for package in $package_list
1912	do
1913	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1914	then
1915	if [[ $package != "dvrp_graphics+1PE" ]]
1916	then
1917	cpp_options="${cpp_options},-D__$package=__$package"
1918	else
1919	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1920	export use_seperate_pe_for_dvrp_output=true
1921	fi
1922	else
1923	if [[ $package != "dvrp_graphics+1PE" ]]
1924	then
1925	cpp_options="$cpp_options -D__$package"
1926	else
1927	cpp_options="$cpp_options -D__dvrp_graphics"
1928	export use_seperate_pe_for_dvrp_output=true
1929	fi
1930	fi
1931	done
1932	fi
1933
1934	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1935	if [[ -n $cpp_opts ]]
1936	then
1937	for popts in $cpp_opts
1938	do
1939	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1940	then
1941	cpp_options="${cpp_options},-D__$popts=__$popts"
1942	else
1943	cpp_options="$cpp_options -D__$popts"
1944	fi
1945	done
1946	fi
1947
1948	else
1949
1950
1951	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1952	if [[ $do_remote = false ]]
1953	then
1954	if [[ ! -f $executable ]]
1955	then
1956	printf "\n +++ executable file: $executable"
1957	printf "\n does not exist"
1958	locat=executable; exit
1959	fi
1960	fi
1961	fi
1962
1963
1964	# JOBMODUS FESTSTELLEN
1965	if [[ "$ENVIRONMENT" = BATCH ]]
1966	then
1967	jobmo=BATCH
1968	else
1969	jobmo=INTERACTIVE
1970	fi
1971
1972
1973	# no interactive runs on lctit
1974	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1975	then
1976	printf "\n +++ no interactive runs allowed on host \"$host\" "
1977	printf "\n please submit batch job using mrun option \"-b\" \n"
1978	locat=normal; exit
1979	fi
1980
1981
1982	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1983	# DURCH BENUTZER ANDERWEITIG VEREINBART
1984	if [[ "$compiler_name" = "" ]]
1985	then
1986
1987	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1988	locat=compiler_name; exit
1989
1990	fi
1991
1992
1993	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1994	[[ $localhost = necriam ]] && compiler_name=mpif90
1995
1996
1997
1998	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1999	kennung=$RANDOM
2000	if [[ "$tmp_user_catalog" = "" ]]
2001	then
2002	if [[ $localhost = ibmh ]]
2003	then
2004	tmp_user_catalog=$SCRATCH
2005	elif [[ $localhost = nech ]]
2006	then
2007	tmp_user_catalog=$WRKSHR
2008	else
2009	tmp_user_catalog=/tmp
2010	fi
2011	fi
2012	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2013
2014
2015	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2016	# BESTIMMEN
2017	if [[ "$tmp_data_catalog" = "" ]]
2018	then
2019	if [[ $localhost = nech ]]
2020	then
2021	tmp_data_catalog=$WRKSHR/mrun_restart_data
2022	else
2023	tmp_data_catalog=/tmp/mrun_restart_data
2024	fi
2025	fi
2026
2027
2028	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2029	# ERSETZEN
2030	if [[ $do_remote = false && $do_compile = true ]]
2031	then
2032	eval fopts=\"$fopts\"
2033	eval lopts=\"$lopts\"
2034	fi
2035
2036
2037
2038	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2039	fopts="$fopts $netcdf_inc $dvr_inc"
2040	lopts="$lopts $netcdf_lib $dvr_lib"
2041	ROPTS="$ropts"
2042	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2043	then
2044	XOPT="-X $numprocs"
2045	fi
2046
2047
2048
2049	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2050	# GRAMM BENOETIGT
2051	done=false
2052	while [[ $done = false ]]
2053	do
2054	cputime=$cpumax
2055	if (( $cputime == 0 ))
2056	then
2057	if [[ $do_batch = true ]]
2058	then
2059	printf "\n +++ cpu-time is undefined"
2060	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2061	printf "\n >>> "
2062	read cputime 1>/dev/null 2>&1
2063	else
2064	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2065	fi
2066	else
2067	done=true
2068	fi
2069	cpumax=$cputime
2070	done
2071
2072	(( minuten = cputime / 60 ))
2073	(( sekunden = cputime - minuten * 60 ))
2074
2075
2076	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2077	if [[ $do_batch = true ]]
2078	then
2079	done=false
2080	while [[ $done = false ]]
2081	do
2082	if (( memory == 0 ))
2083	then
2084	printf "\n +++ memory demand is undefined"
2085	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2086	printf "\n >>> "
2087	read memory 1>/dev/null 2>&1
2088	else
2089	done=true
2090	fi
2091	done
2092	fi
2093
2094
2095	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2096	if [[ $do_remote = true && -z $remote_username ]]
2097	then
2098	while [[ -z $remote_username ]]
2099	do
2100	printf "\n +++ username on remote host \"$host\" is undefined"
2101	printf "\n >>> Please type username:"
2102	printf "\n >>> "
2103	read remote_username
2104	done
2105	mc="$mc -u$remote_username"
2106	fi
2107
2108	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2109	if [[ "$login_init_cmd" != "" ]]
2110	then
2111	export init_cmds="${login_init_cmd};"
2112	fi
2113
2114
2115	# set module load command and export for subjob
2116	if [[ "$modules" != "" ]]
2117	then
2118	if [[ $host = lctit ]]
2119	then
2120	export module_calls=". $modules"
2121	else
2122	export module_calls="module load ${modules};"
2123	fi
2124	fi
2125
2126	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2127	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2128	then
2129	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2130	then
2131	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2132	fi
2133	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2134	# then
2135	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2136	# echo "*** module_calls = $module_calls"
2137	# fi
2138	fi
2139
2140
2141	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2142	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2143	then
2144	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2145	then
2146	mpilib=mpt
2147	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2148	then
2149	mpilib=mvapich
2150	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2151	then
2152	mpilib=impi
2153	fi
2154	fi
2155
2156
2157
2158	###########################################################################
2159	# HEADER-AUSGABE
2160	###########################################################################
2161
2162
2163	calltime=$(date)
2164	printf "\n"
2165	# [[ $silent = false ]] && clear
2166	printf "#--------------------------------------------------------------# \n"
2167	printf "\| $version$calltime \| \n"
2168	printf "\| \| \n"
2169	spalte1="called on:"; spalte2=$localhost_realname
2170	printf "\| $spalte1$spalte2 \| \n"
2171	if [[ $local_compile = false ]]
2172	then
2173	if [[ $do_remote = true ]]
2174	then
2175	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2176	else
2177	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2178	fi
2179	else
2180	spalte1="compiling test only!"; spalte2=""
2181	fi
2182	printf "\| $spalte1$spalte2 \| \n"
2183	if [[ -n $numprocs ]]
2184	then
2185	spalte1="number of PEs:"; spalte2=$numprocs
2186	printf "\| $spalte1$spalte2 \| \n"
2187	fi
2188	if [[ -n $tasks_per_node ]]
2189	then
2190	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2191	printf "\| $spalte1$spalte2 \| \n"
2192	fi
2193	if [[ $maximum_parallel_io_streams != $numprocs ]]
2194	then
2195	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2196	printf "\| $spalte1$spalte2 \| \n"
2197	fi
2198	if [[ $use_openmp = true ]]
2199	then
2200	spalte1="threads per task:"; spalte2="$threads_per_task"
2201	printf "\| $spalte1$spalte2 \| \n"
2202	fi
2203	printf "\| \| \n"
2204	if [[ $do_compile = true ]]
2205	then
2206	if [[ "$mopts" != "" ]]
2207	then
2208	spalte1="make options:"; spalte2=$mopts
2209	printf "\| $spalte1$spalte2 \| \n"
2210	zeile=$(echo "$mopts" \| cut -c41-)
2211	while [[ "$zeile" != "" ]]
2212	do
2213	spalte1=""
2214	spalte2=$zeile
2215	printf "\| $spalte1$spalte2 \| \n"
2216	zeile=$(echo "$zeile" \| cut -c41-)
2217	done
2218	fi
2219
2220	spalte1="cpp directives:"; spalte2=$cpp_options
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$cpp_options" \| cut -c41-)
2223	while [[ "$zeile" != "" ]]
2224	do
2225	spalte1=""
2226	spalte2=$zeile
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$zeile" \| cut -c41-)
2229	done
2230
2231	spalte1="compiler options:"; spalte2="$fopts"
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$fopts" \| cut -c41-)
2234	while [[ "$zeile" != "" ]]
2235	do
2236	spalte1=""
2237	spalte2=$zeile
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$zeile" \| cut -c41-)
2240	done
2241
2242	spalte1="linker options:"; spalte2=$lopts
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$lopts" \| cut -c41-)
2245	while [[ "$zeile" != "" ]]
2246	do
2247	spalte1=""
2248	spalte2=$zeile
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$zeile" \| cut -c41-)
2251	done
2252
2253	spalte1="modules to be load:"; spalte2=$modules
2254	printf "\| $spalte1$spalte2 \| \n"
2255	zeile=$(echo "$modules" \| cut -c41-)
2256	while [[ "$zeile" != "" ]]
2257	do
2258	spalte1=""
2259	spalte2=$zeile
2260	printf "\| $spalte1$spalte2 \| \n"
2261	zeile=$(echo "$zeile" \| cut -c41-)
2262	done
2263
2264	spalte1="main program":; spalte2=$mainprog
2265	printf "\| $spalte1$spalte2 \| \n"
2266	else
2267	spalte1=executable:; spalte2=$executable
2268	printf "\| $spalte1$spalte2 \| \n"
2269	fi
2270	printf "\| \| \n"
2271	spalte1="base name of files":; spalte2=$fname
2272	printf "\| $spalte1$spalte2 \| \n"
2273	if [[ $fname != $afname ]]
2274	then
2275	spalte1="base name of input files":; spalte2=$afname
2276	printf "\| $spalte1$spalte2 \| \n"
2277	fi
2278	spalte1="INPUT control list":; spalte2=$input_list
2279	printf "\| $spalte1$spalte2 \| \n"
2280	spalte1="OUTPUT control list":; spalte2=$output_list
2281	printf "\| $spalte1$spalte2 \| \n"
2282
2283	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2284	then
2285	spalte1="memory demand / PE":; spalte2="$memory MB"
2286	printf "\| $spalte1$spalte2 \| \n"
2287	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2288	printf "\| $spalte1$spalte2 \| \n"
2289	fi
2290
2291	if [[ $do_compile = true ]]
2292	then
2293	printf "\| \| \n"
2294	printf "\| Files to be compiled: \| \n"
2295	zeile=$source_list
2296	while [[ "$zeile" != "" ]]
2297	do
2298	spalte3=$zeile
2299	printf "\| $spalte3 \| \n"
2300	zeile=$(echo "$zeile" \| cut -c61-)
2301	done
2302	fi
2303	printf "#--------------------------------------------------------------#"
2304
2305
2306
2307	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2308	if [[ $do_trace = true ]]
2309	then
2310	(( i = 0 ))
2311	while (( i < iin ))
2312	do
2313	(( i = i + 1 ))
2314	if (( i == 1 ))
2315	then
2316	printf "\n\n >>> INPUT-file assignments:\n"
2317	fi
2318	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2319	done
2320	(( i = 0 ))
2321	while (( i < iout ))
2322	do
2323	(( i = i + 1 ))
2324	if (( i == 1 ))
2325	then
2326	printf "\n\n >>> OUTPUT-file assignments:\n"
2327	fi
2328	printf "\n ${localout[$i]} : ${pathout[$i]}"
2329	done
2330	(( i = 0 ))
2331	while (( i < iic ))
2332	do
2333	(( i = i + 1 ))
2334	if (( i == 1 ))
2335	then
2336	printf "\n\n >>> INPUT-commands:\n"
2337	fi
2338	printf "\n ${in_command[$i]}"
2339	done
2340	(( i = 0 ))
2341	while (( i < ioc ))
2342	do
2343	(( i = i + 1 ))
2344	if (( i == 1 ))
2345	then
2346	printf "\n\n >>> OUTPUT-commands:\n"
2347	fi
2348	printf "\n ${out_command[$i]}"
2349	done
2350	fi
2351
2352
2353	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2354	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2355	then
2356	antwort=dummy
2357	printf "\n\n"
2358	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2359	do
2360	printf " >>> everything o.k. (y/n) ? "
2361	read antwort
2362	done
2363	if [[ $antwort = n \|\| $antwort = N ]]
2364	then
2365	locat=user_abort; (( iec = 0 )); exit
2366	fi
2367	if [[ $do_batch = true ]]
2368	then
2369	printf " >>> batch-job will be created and submitted"
2370	else
2371	if [[ $local_compile = false ]]
2372	then
2373	printf " >>> MRUN will now continue to execute on this machine"
2374	else
2375	printf " >>> a test compilation will now be carried out on this machine"
2376	fi
2377	fi
2378	fi
2379
2380	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2381
2382	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2383	check_depository="${working_directory}/trunk/UTIL"
2384	check_sources="${working_directory}/tmp_check_namelist_files"
2385	skip_check=false
2386
2387	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2388	if [[ ! -f $check_depository/check_namelist_files.tar \|\| ! -f $PALM_BIN/check_namelist_files.x ]]
2389	then
2390	skip_check=true
2391	reason="parameter file check has not been compiled."
2392	fi
2393
2394	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2395	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2396	then
2397	skip_check=true
2398	reason="serial run."
2399	fi
2400
2401	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2402	if [[ $check_namelist_files == false ]]
2403	then
2404	skip_check=true
2405	reason="-z option set."
2406	fi
2407
2408	if [[ $fromhost != $localhost ]]
2409	then
2410	skip_check=true
2411	reason="submitting host is local host."
2412	fi
2413
2414	if [[ $run_coupled_model == true ]]
2415	then
2416	skip_check=true
2417	reason="coupled run."
2418	fi
2419
2420	if [[ $restart_run == true ]]
2421	then
2422	skip_check=true
2423	reason="restart run."
2424
2425	fi
2426
2427	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2428	((last_char = `echo $filename \| wc -c` - 1))
2429	last_char=`echo $filename \|cut -c$last_char`
2430	if [[ "$last_char" == "f" ]]
2431	then
2432	skip_check=true
2433	reason="restart run.)"
2434	fi
2435
2436	if [[ $skip_check == false ]]
2437	then
2438
2439	tmp_check=${working_directory}/tmp_check
2440
2441	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2442	# NOT NECESSARILY REQUIRED
2443	line=""
2444	found=false
2445	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2446	while read line1
2447	do
2448	line="$line1"
2449	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2450	then
2451	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2452	found=true
2453	fi
2454	done < $tmp_check
2455
2456	if [[ $found = false ]]
2457	then
2458	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2459	fi
2460
2461	rm -rf ${working_directory}/tmp_check
2462
2463	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2464	for item in $input_list
2465	do
2466	if [[ "$item" == "restart" ]]
2467	then
2468	check_restart=1
2469	else
2470	check_restart=0
2471	fi
2472	done
2473
2474	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2475	if [[ ! -f $filename ]]
2476	then
2477	printf "\n\n +++ ERROR: parameter file ($filename) not found."
2478	locat=check_namelist; exit
2479	fi
2480
2481	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2482	if [[ $check_restart == 1 ]]
2483	then
2484
2485
2486
2487	filenamef="${filename}f"
2488	if [[ ! -f $filenamef ]]
2489	then
2490	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2491	check_restart=0
2492	answer=dummy
2493	printf "\n\n"
2494
2495	if [[ $silent == false ]]
2496	then
2497	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2498	do
2499	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2500	read answer
2501	done
2502	if [[ $answer = a \|\| $answer = A ]]
2503	then
2504	printf "\n +++ Aborting...."
2505	locat=normal; exit
2506	fi
2507	fi
2508	else
2509	check_restart=1
2510	fi
2511	fi
2512
2513	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2514	mkdir $check_sources
2515	cd $check_sources
2516
2517
2518	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2519	if [[ -d $add_source_path ]]
2520	then
2521	printf "\n\n *** copying files from $check_depository"
2522	cp $check_depository/check_namelist_files.tar ./
2523
2524	printf "\n\n *** untar of makefile and source files in $check_sources"
2525	tar -xf check_namelist_files.tar > /dev/null 2>&1
2526
2527	printf "\n\n *** adding user code."
2528	cp $add_source_path/* ./
2529	touch check_namelist_files.f90
2530
2531	# GET COMPILER OPTIONS AND PERFORM MAKE
2532	printf "\n\n *** compiling code if necessary...\n"
2533	copts_check="-cpp -D_parallel -D__check"
2534	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2535
2536	# GET MAKE OUTPUT
2537	if [[ $? != 0 ]]
2538	then
2539	printf "\n +++ error during make."
2540	answer=dummy
2541	printf "\n\n"
2542	if [[ $silent == false ]]
2543	then
2544	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2545	do
2546	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2547	read answer
2548	done
2549	if [[ $answer = a \|\| $answer = A ]]
2550	then
2551	printf "\n +++ Aborting..."
2552	rm -rf $check_sources
2553	locat=normal; exit
2554	else
2555	skip_check=true
2556	fi
2557	else
2558	skip_check=true
2559	fi
2560	fi
2561	else
2562	cp $PALM_BIN/check_namelist_files.x ./
2563	fi
2564
2565	cp $filename ./PARIN
2566	if [[ $check_restart == 1 ]]
2567	then
2568	cp $filenamef ./PARINF
2569	fi
2570
2571	cat ${pathname}/${fname}${topo_suffix}
2572	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2573	then
2574	printf "\n *** adding topography data"
2575	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2576
2577	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2578	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2579	# WHICH REQUIRE SUFFICIENT MEMORY
2580	ulimit -s unlimited
2581	fi
2582
2583	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2584	cat > ENVPAR << %%END%%
2585	&envpar run_identifier = '$fname', host = '$host',
2586	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2587	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2588	maximum_cpu_time_allowed = ${cpumax}.,
2589	revision = '$global_revision',
2590	local_dvrserver_running = $local_dvrserver_running /
2591
2592	%%END%%
2593
2594	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2595	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2596	printf "\n +++ WARNING: check_namelist_files.x not found."
2597	answer=dummy
2598	printf "\n\n"
2599
2600	if [[ $silent == false ]]
2601	then
2602	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2603	do
2604	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2605	read answer
2606	done
2607	if [[ $answer = a \|\| $answer = A ]]
2608	then
2609	printf "\n +++ Aborting..."
2610	rm -rf $check_sources
2611	locat=normal; exit
2612	else
2613	printf "\n *** Skipping parameter file check."
2614
2615	fi
2616	fi
2617
2618	elif [[ $skip_check == false ]]
2619	then
2620	# STARTING THE PARAMETER FILE CHECK
2621	printf "\n\n *** starting parameter file check..."
2622
2623	# CHECKING THE P3D FILE
2624	printf "\n\n (1) checking $filename"
2625	echo "$numprocs 0" > VARIN
2626	errors=`./check_namelist_files.x < VARIN 2>&1`
2627
2628	check_error=false
2629	if [[ "$errors" == "" ]]
2630	then
2631	printf " --> o.k."
2632	else
2633	printf " --> failed."
2634	check_error=true
2635	printf "\n\n $errors"
2636	fi
2637
2638	# CHECKING THE PD3F FILE IF NECESSARY
2639	if [[ $check_restart == 1 && $check_error == false ]]
2640	then
2641	printf "\n\n (2) checking $filenamef"
2642
2643	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2644	found=false
2645	cat PARINF\|while read line
2646	do
2647	line=$(echo $line\|sed 's/ //g')
2648	if [[ $line == "&inipar" ]]
2649	then
2650	start_search=true
2651	fi
2652
2653	if [[ $start_search == true ]]
2654	then
2655	if [[ $line == "initializing_actions='read_restart_data'" ]]
2656	then
2657	found=true
2658	break
2659	fi
2660	fi
2661
2662	if [[ $line == "/" ]]
2663	then
2664	start_search=false
2665	fi
2666
2667	done
2668
2669	if [[ $found = false ]]
2670	then
2671	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2672	printf "\n in &inipar list in $fname$p3df_suffix."
2673	rm -rf $check_sources
2674	locat=check_namelist; exit
2675	fi
2676
2677	echo "$numprocs 1" > VARIN
2678	errors=`./check_namelist_files.x < VARIN 2>&1`
2679
2680	if [[ "$errors" == "" ]]
2681	then
2682	printf " --> o.k."
2683	else
2684	printf " --> failed."
2685	check_error=true
2686	printf "\n\n $errors"
2687	fi
2688	fi
2689
2690	# REPORT ERRORS AND CONTINUE/EXIT
2691	if [[ $check_error == true ]]
2692	then
2693	printf "\n +++ errors found in the parameter file!\n"
2694	answer=dummy
2695	printf "\n\n"
2696
2697	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2698	do
2699	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2700	read answer
2701	done
2702
2703	if [[ $answer = a \|\| $answer = A ]]
2704	then
2705	printf "\n +++ Aborting..."
2706	rm -rf $check_sources
2707	locat=normal; exit
2708	fi
2709	else
2710	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2711	fi
2712	rm -rf $check_sources
2713	fi
2714	else
2715	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2716	fi
2717
2718	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2719	rm -rf $check_sources
2720	cd $working_directory
2721
2722
2723	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2724	# CHENDE AKTIONEN DURCHGEFUEHRT
2725	if [[ $do_batch = false ]]
2726	then
2727
2728
2729	# TEMPORAEREN KATALOG ERZEUGEN
2730	mkdir -p $TEMPDIR
2731	chmod go+rx $TEMPDIR
2732	tmpcreate=true
2733
2734	# set striping on lustre file system
2735	# if [[ $localhost = lcsgih ]]
2736	# then
2737	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2738	# lfs getstripe $TEMPDIR
2739	# fi
2740
2741
2742	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2743	# TEMPORAERES VERZEICHNIS KOPIEREN
2744	if [[ $do_compile = true ]]
2745	then
2746
2747	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2748	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2749	if [[ $localhost = nech ]]
2750	then
2751	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2752	if mkdir -p $TEMPDIR_COMPILE
2753	then
2754	printf "\n *** \"$TEMPDIR_COMPILE\" "
2755	printf "\n is generated as temporary directory for cross compiling\n"
2756	else
2757	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2758	printf "\n needed for cross compilation failed"
2759	locat=compile
2760	exit
2761	fi
2762	else
2763	TEMPDIR_COMPILE=$TEMPDIR
2764	fi
2765
2766
2767	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2768	line=""
2769	grep "%depository_path" $config_file > tmp_mrun
2770	while read line
2771	do
2772	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2773	then
2774	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2775	then
2776	global_depository_path=`echo $line \| cut -d" " -s -f2`
2777	fi
2778	fi
2779	done < tmp_mrun
2780
2781	line=""
2782	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2783	while read line
2784	do
2785	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2786	then
2787	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2788	then
2789	local_depository_path=`echo $line \| cut -d" " -s -f2`
2790	fi
2791	fi
2792	done < tmp_mrun
2793
2794	if [[ "$local_depository_path" = "" ]]
2795	then
2796	if [[ "$global_depository_path" != "" ]]
2797	then
2798	local_depository_path=$global_depository_path
2799	else
2800	printf "\n\n +++ no depository path found in configuration file"
2801	printf "\n for local host \"$localhost\" "
2802	printf "\n please set \"\%depository_path\" in configuration file\n"
2803	locat=config_file; exit
2804	fi
2805	fi
2806	eval local_depository_path=$local_depository_path
2807	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2808	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2809
2810
2811	basename=`print $mainprog \| cut -f1 -d"."`
2812	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2813	if [[ ! -f $make_depository ]]
2814	then
2815	printf "\n"
2816	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2817	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2818	else
2819	cp $make_depository $TEMPDIR_COMPILE
2820	cd $TEMPDIR_COMPILE
2821	tar -xf $make_depository > /dev/null 2>&1
2822	cd - > /dev/null
2823	fi
2824
2825	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2826
2827	else
2828
2829	cp $executable ${TEMPDIR}/a.out
2830
2831	fi
2832
2833
2834	# WECHSEL IN TEMPORAEREN KATALOG
2835	cd $TEMPDIR
2836	printf "\n *** changed to temporary directory: $TEMPDIR"
2837
2838
2839	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2840	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2841	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2842	# ERMITTELN
2843	(( i = 0 ))
2844	while (( i < iout ))
2845	do
2846	(( i = i + 1 ))
2847	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2848	then
2849	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2850	else
2851	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2852	fi
2853	done
2854
2855
2856	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2857	if [[ $do_compile = true ]]
2858	then
2859
2860
2861	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2862	printf "\n\n\n *** compilation starts \n$striche\n"
2863	printf " *** compilation with make using following options:\n"
2864	printf " make depository: $make_depository"
2865	if [[ "$mopts" != "" ]]
2866	then
2867	printf " make options: $mopts\n"
2868	fi
2869	printf " compilername: $compiler_name\n"
2870	printf " compiler options: $fopts\n"
2871	printf " preprocessor directives: $cpp_options \n"
2872	printf " linker options: $lopts \n"
2873	if [[ "$modules" != "" ]]
2874	then
2875	printf " modules to be load: $modules \n"
2876	fi
2877	printf " source code files: $source_list \n"
2878
2879	if [[ $localhost = nech ]]
2880	then
2881	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2882	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2883	cp $TEMPDIR_COMPILE/a.out .
2884	[[ $? != 0 ]] && compile_error=true
2885	rm -rf $TEMPDIR_COMPILE
2886	elif [[ $localhost = ibmh ]]
2887	then
2888	printf " compiler is called via ssh on \"plogin1\" \n"
2889	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2890	[[ ! -f a.out ]] && compile_error=true
2891	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2892	elif [[ $localhost = lcsgib ]]
2893	then
2894	printf " compiler is called via ssh on \"bicegate0\" \n"
2895	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2896	[[ ! -f a.out ]] && compile_error=true
2897	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2898	elif [[ $localhost = lcsgih ]]
2899	then
2900	printf " compiler is called via ssh on \"hicegate0\" \n"
2901	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2902	[[ ! -f a.out ]] && compile_error=true
2903	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2904	elif [[ $localhost = lcflow ]]
2905	then
2906	printf " compiler is called via ssh on \"flow\" \n"
2907	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2908	[[ ! -f a.out ]] && compile_error=true
2909	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2910	else
2911	[[ $localhost = lcxe6 ]] && eval $init_cmds
2912	[[ "$module_calls" != "" ]] && eval $module_calls
2913	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2914
2915	fi
2916
2917	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2918	then
2919	printf "\n +++ error occured while compiling or linking"
2920	locat=compile
2921
2922	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2923	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2924	# then
2925	exit
2926	# else
2927	# locat=normal
2928	# fi
2929	else
2930	printf "$striche\n *** compilation finished \n"
2931	fi
2932	fi
2933
2934
2935	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2936	if [[ $local_compile = true ]]
2937	then
2938	cd $HOME
2939	rm -rf $TEMPDIR
2940	locat=local_compile; exit
2941	fi
2942
2943
2944	# BEREITSTELLEN DER INPUT-DATEIEN
2945	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2946	(( i = 0 ))
2947	while (( i < iin ))
2948	do
2949	(( i = i + 1 ))
2950	if (( i == 1 ))
2951	then
2952	printf "\n\n *** providing INPUT-files:\n$striche"
2953	fi
2954
2955
2956	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2957	if [[ "${transin[$i]}" = unavailable ]]
2958	then
2959	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2960	then
2961	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2962	printf "\n is not available!"
2963	else
2964	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2965	printf "\n is not available!"
2966	fi
2967	continue
2968	fi
2969
2970	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2971	files_for_pes=false; datentyp=file
2972	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2973	then
2974	files_for_pes=true; datentyp=directory
2975	actionin[$i]=""
2976	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2977	then
2978	actionin[$i]=""
2979	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2980	then
2981	files_for_pes=true; datentyp=directory
2982	actionin[$i]="ar"
2983	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2984	then
2985	actionin[$i]="ar"
2986	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2987	then
2988	files_for_pes=true; datentyp=directory
2989	actionin[$i]="fl"
2990	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2991	then
2992	actionin[$i]="fl"
2993	fi
2994
2995	if [[ $files_for_pes = true ]]
2996	then
2997	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2998	else
2999	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3000	fi
3001
3002	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3003	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3004	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3005	# SERVER ZU HOLEN
3006	if [[ "${actionin[$i]}" = fl ]]
3007	then
3008	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3009	if [[ $files_for_pes = false ]]
3010	then
3011	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3012	then
3013	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3014	got_tmp[$i]=true
3015	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3016	then
3017	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3018	printf "\n *** trying to use backup copy in \"$WORK\" "
3019	cp $WORK/${frelin[$i]} ${localin[$i]}
3020	else
3021	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3022	printf "\n or \"$tmp_data_catalog\" does not exist!"
3023	printf "\n *** trying to get copy from archive"
3024	actionin[$i]=ar
3025	fi
3026	else
3027	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3028	then
3029	mkdir ${localin[$i]}
3030	cd $tmp_data_catalog/${frelin[$i]}
3031	for file in $(ls *)
3032	do
3033	ln $file $TEMPDIR/${localin[$i]}
3034	done
3035	cd $TEMPDIR
3036	got_tmp[$i]=true
3037	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3038	then
3039	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3040	printf "\n *** trying to use backup copy in \"$WORK\" "
3041	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3042	else
3043	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3044	printf "\n or \"$tmp_data_catalog\" does not exist!"
3045	printf "\n *** trying to get copy from archive"
3046	actionin[$i]=ar
3047	fi
3048	fi
3049	fi
3050
3051
3052	# DATEI LIEGT AUF ARCHIV-SERVER
3053	if [[ "${actionin[$i]}" = ar ]]
3054	then
3055
3056	if [[ $files_for_pes = false ]]
3057	then
3058	printf "\n file will be restored from archive-system ($archive_system)!"
3059	else
3060	printf "\n directory will be restored from archive-system ($archive_system)!"
3061	fi
3062
3063	file_restored=false
3064
3065	if [[ $archive_system = asterix ]]
3066	then
3067	do_stagein=true
3068	(( stagein_anz = 0 ))
3069	while [[ $do_stagein = true ]]
3070	do
3071	if [[ $files_for_pes = false ]]
3072	then
3073	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3074	else
3075	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3076	fi
3077	cat STAGEIN_OUTPUT
3078	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3079	then
3080	file_restored=true
3081	do_stagein=false
3082	else
3083	(( stagein_anz = stagein_anz + 1 ))
3084	if (( stagein_anz == 10 ))
3085	then
3086	printf "\n +++ stagein stoped after 10 tries"
3087	locat=stage
3088	exit
3089	fi
3090	printf "\n +++ restoring from archive failed, trying again:"
3091	sleep 900
3092	fi
3093	done
3094	elif [[ $archive_system = DMF ]]
3095	then
3096	if [[ $files_for_pes = false ]]
3097	then
3098	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3099	locat=DMF
3100	exit
3101	else
3102	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3103	cp -r $ARCHIVE/${frelin[$i]} $PWD
3104	file_restored=true
3105	fi
3106	elif [[ $archive_system = tivoli ]]
3107	then
3108	if [[ $files_for_pes = false ]]
3109	then
3110	if [[ $localhost = lcsgih ]]
3111	then
3112	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3113	else
3114	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3115	fi
3116	else
3117	(( inode = 0 ))
3118	while (( inode < nodes ))
3119	do
3120	if [[ $localhost = lcsgih ]]
3121	then
3122	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3123	else
3124	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3125	fi
3126	(( inode = inode + 1 ))
3127	done
3128	fi
3129	file_restored=true
3130	elif [[ $archive_system = ut ]]
3131	then
3132	if [[ $files_for_pes = false ]]
3133	then
3134	cp $UT/${frelin[$i]} .
3135	else
3136	(( inode = 0 ))
3137	while (( inode < nodes ))
3138	do
3139	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3140	(( inode = inode + 1 ))
3141	done
3142	fi
3143	file_restored=true
3144	else
3145	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3146	locat=rearchive
3147	exit
3148	fi
3149
3150	if [[ $file_restored = true ]]
3151	then
3152
3153	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3154	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3155	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3156	if [[ $files_for_pes = false ]]
3157	then
3158	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3159	else
3160	mkdir $tmp_data_catalog/${frelin[$i]}
3161	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3162	fi
3163	got_tmp[$i]=true
3164
3165	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3166	mv ${frelin[$i]} ${localin[$i]}
3167
3168	fi
3169	fi
3170
3171
3172	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3173	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3174	then
3175
3176	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3177	then
3178
3179	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3180	printf "\n file will be provided for $numprocs processors"
3181	mkdir ${localin[$i]}
3182	ival=$numprocs
3183	(( ii = 0 ))
3184	while (( ii <= ival-1 ))
3185	do
3186	if (( ii < 10 ))
3187	then
3188	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3189	elif (( ii < 100 ))
3190	then
3191	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3192	elif (( ii < 1000 ))
3193	then
3194	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3195	else
3196	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3197	fi
3198	(( ii = ii + 1 ))
3199	done
3200
3201	else
3202
3203	if [[ $files_for_pes = true ]]
3204	then
3205
3206	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3207	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3208	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3209	# PER MOVE UMBENANNT WERDEN
3210	printf "\n providing $numprocs files for the respective processors"
3211	mkdir ${localin[$i]}
3212	if [[ $link_local_input = true ]]
3213	then
3214	printf " using ln -f\n"
3215	cd ${absnamein[$i]}
3216	for file in $(ls *)
3217	do
3218	ln -f $file ${localin[$i]}
3219	done
3220	cd $TEMPDIR
3221	fi
3222	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3223	if [[ ! -f "${localin[$i]}/_0000" ]]
3224	then
3225	if [[ $link_local_input = true ]]
3226	then
3227	printf " ln failed for .../_0000, using cp...\n"
3228	fi
3229	cp -r ${absnamein[$i]}/* ${localin[$i]}
3230	fi
3231
3232	else
3233	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3234	if [[ $link_local_input = true ]]
3235	then
3236	printf " using ln -f\n"
3237	ln -f ${absnamein[$i]} ${localin[$i]}
3238	fi
3239	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3240	if [[ ! -f "${localin[$i]}" ]]
3241	then
3242	if [[ $link_local_input = true ]]
3243	then
3244	printf " ln failed, using cp...\n"
3245	fi
3246	cp ${absnamein[$i]} ${localin[$i]}
3247	fi
3248	fi
3249	fi
3250	fi
3251
3252	done
3253	if (( i != 0 ))
3254	then
3255	printf "\n$striche\n *** all INPUT-files provided \n"
3256	fi
3257
3258
3259	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3260	(( i = 0 ))
3261	while (( i < iic ))
3262	do
3263	(( i = i + 1 ))
3264	if (( i == 1 ))
3265	then
3266	printf "\n\n *** execution of INPUT-commands:\n$striche"
3267	fi
3268	printf "\n >>> ${in_command[$i]}"
3269	eval ${in_command[$i]}
3270	if (( i == iic ))
3271	then
3272	printf "\n$striche\n"
3273	fi
3274	done
3275
3276
3277	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3278	cpurest=${cpumax}.
3279
3280
3281	# START DVR STREAMING SERVER
3282	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3283	then
3284	if [[ "$dvr_server" != "" ]]
3285	then
3286
3287	printf "\n\n *** preparing the dvr streaming server configuration file"
3288
3289	# Check, if a dvr server is already running
3290	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3291	if [[ "$running_dvrserver_id" != "" ]]
3292	then
3293
3294	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3295	printf "\n This server is used instead starting a new one!"
3296	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3297
3298	else
3299
3300	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3301	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3302	then
3303	cp ${PALM_BIN}/.dvrserver.config .
3304
3305	# Entering the BASEDIR, UID and GID into this file
3306	user_id=`id -u`
3307	group_id=`id -g`
3308	# & is needed as seperator, because TEMPDIR contains /
3309	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3310	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3311	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3312	mv .dvrserver.3 .dvrserver.config
3313	rm .dvrserver.1 .dvrserver.2
3314
3315	# Start dvr server in background, get his id and print on terminal
3316	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3317	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3318	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3319	local_dvrserver_running=.TRUE.
3320	else
3321	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3322	printf "\n \"$PALM_BIN\" "
3323	locat=dvr
3324	exit
3325	fi
3326
3327	fi
3328
3329	else
3330	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3331	fi
3332	fi
3333
3334
3335	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3336	# LESEN VON PALM)
3337	cat > ENVPAR << %%END%%
3338	&envpar run_identifier = '$fname', host = '$localhost',
3339	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3340	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3341	maximum_cpu_time_allowed = ${cpumax}.,
3342	revision = '$global_revision',
3343	local_dvrserver_running = $local_dvrserver_running /
3344
3345	%%END%%
3346
3347
3348	# PROGRAMMSTART
3349	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3350	PATH=$PATH:$TEMPDIR
3351
3352	# MPI debug option (argument checking, slows down execution due to increased latency)
3353	if [[ "$mpi_debug" = true ]]
3354	then
3355	export MPI_CHECK_ARGS=1
3356	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3357	fi
3358
3359	if [[ "$totalview" = true ]]
3360	then
3361	printf "\n *** totalview debugger will be used"
3362	tv_opt="-tv"
3363	else
3364	tv_opt=""
3365	fi
3366
3367	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3368	then
3369	if [[ "$ENVIRONMENT" = BATCH ]]
3370	then
3371	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3372	then
3373	printf "\n +++ debug is allowed in interactive mode only"
3374	locat=debug
3375	exit
3376	fi
3377	fi
3378	if [[ $localhost = decalpha ]]
3379	then
3380	dxladebug a.out
3381	elif [[ $localhost = ibmh ]]
3382	then
3383
3384	# SETUP THE IBM MPI ENVIRONMENT
3385	export MP_SHARED_MEMORY=yes
3386	export AIXTHREADS_SCOPE=S
3387	export OMP_NUM_THREADS=$threads_per_task
3388	export AUTHSTATE=files
3389	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3390
3391	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3392	export MP_ADAPTER_USE=shared
3393	export MP_CPU_USE=multiple
3394	export MP_TIMEOUT=1200
3395
3396	unset MP_TASK_AFFINITY
3397
3398	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3399	#(( ii = 1 ))
3400	#while (( ii <= $numprocs ))
3401	#do
3402	# echo $localhost_realname >> hostfile
3403	# (( ii = ii + 1 ))
3404	#done
3405	#export MP_HOSTFILE=hostfile
3406
3407	if [[ "$LOADLBATCH" = yes ]]
3408	then
3409	totalview poe a.out $ROPTS
3410	else
3411	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3412	export TVDSVRLAUNCHCMD=ssh
3413	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3414	fi
3415	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3416	then
3417	# CURRENTLY NO DEBUGGER ON LCSGI
3418	if [[ $run_coupled_model = true ]]
3419	then
3420	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3421	locat=debug
3422	exit
3423	else
3424	echo "no_coupling" > runfile_atmos
3425	fi
3426	(( ii = $numprocs / $threads_per_task ))
3427	export OMP_NUM_THREADS=$threads_per_task
3428	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3429	if [[ $threads_per_task != 1 ]]
3430	then
3431	printf "\n threads per task: $threads_per_task"
3432	fi
3433	printf "\n\n"
3434	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3435	then
3436	# export MPI_LAUNCH_TIMEOUT=360
3437	if [[ "$totalview" = true ]]
3438	then
3439	printf "\n running totalview debugger"
3440	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3441	else
3442	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3443	fi
3444	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3445	then
3446	# ulimit -s 300000 # A too large stack size causes problems
3447	# export MV2_NUM_PORTS=2
3448	# export MV2_CPU_MAPPING=0:1:2:3
3449	if [[ "$totalview" = true ]]
3450	then
3451	printf "\n running totalview debugger"
3452	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3453	else
3454	mpiexec ./a.out $ROPTS < runfile_atmos
3455	fi
3456	fi
3457	else
3458	printf "\n +++ no debug available on \"$localhost\" "
3459	printf "\n or not implemented in mrun so far"
3460	locat=debug
3461	exit
3462	fi
3463
3464	# end debug mode
3465	else
3466
3467	# normal execution
3468	if [[ -n $numprocs ]]
3469	then
3470	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3471	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3472	then
3473	# SETUP THE IBM MPI ENVIRONMENT
3474	if [[ $host != ibmh && $host != ibmkisti ]]
3475	then
3476	export MP_SHARED_MEMORY=yes
3477	export AIXTHREAD_SCOPE=S
3478	export OMP_NUM_THREADS=$threads_per_task
3479	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3480	export AUTHSTATE=files
3481	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3482	# export MP_PRINTENV=yes
3483
3484	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3485	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3486	export MP_WAIT_MODE=poll
3487	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3488	fi
3489
3490	if [[ $host = ibmkisti ]]
3491	then
3492	export LANG=en_US
3493	export MP_SHARED_MEMORY=yes
3494	if [[ $threads_per_task = 1 ]]
3495	then
3496	export MP_SINGLE_THREAD=yes
3497	export MEMORY_AFFINITY=MCM
3498	else
3499	export OMP_NUM_THREADS=$threads_per_task
3500	fi
3501	fi
3502
3503	if [[ "$LOADLBATCH" = yes ]]
3504	then
3505	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3506	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3507	then
3508	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3509	else
3510	if [[ $run_coupled_model = false ]]
3511	then
3512	if [[ "$ocean_file_appendix" = true ]]
3513	then
3514	echo "precursor_ocean" > runfile_atmos
3515	else
3516	echo "precursor_atmos" > runfile_atmos
3517	fi
3518	else
3519	(( iia = $numprocs_atmos / $threads_per_task ))
3520	(( iio = $numprocs_ocean / $threads_per_task ))
3521	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3522	printf "\n using $coupled_mode coupling"
3523	printf "\n\n"
3524	echo "coupled_run $iia $iio" > runfile_atmos
3525	fi
3526	poe ./a.out $ROPTS < runfile_atmos
3527	fi
3528	else
3529	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3530	then
3531	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3532	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3533	then
3534	if [[ -f $hostfile ]]
3535	then
3536	cp $hostfile hostfile
3537	else
3538	(( ii = 1 ))
3539	while (( ii <= $numprocs ))
3540	do
3541	echo $localhost_realname >> hostfile
3542	(( ii = ii + 1 ))
3543	done
3544	fi
3545	export MP_HOSTFILE=hostfile
3546	if [[ $run_coupled_model = false ]]
3547	then
3548	if [[ "$ocean_file_appendix" = true ]]
3549	then
3550	echo "precursor_ocean" > runfile_atmos
3551	else
3552	echo "precursor_atmos" > runfile_atmos
3553	fi
3554	else
3555	(( iia = $numprocs_atmos / $threads_per_task ))
3556	(( iio = $numprocs_ocean / $threads_per_task ))
3557	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3558	printf "\n using $coupled_mode coupling"
3559	printf "\n\n"
3560	echo "coupled_run $iia $iio" > runfile_atmos
3561	fi
3562	if [[ $localhost = ibmy ]]
3563	then
3564	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3565	else
3566	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3567	fi
3568
3569	else
3570	if [[ "$host_file" = "" ]]
3571	then
3572	printf "\n +++ no hostfile given in configuration file"
3573	locat=config_file
3574	exit
3575	else
3576	eval host_file=$host_file
3577	fi
3578	export MP_HOSTFILE=$host_file
3579	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3580	fi
3581	fi
3582	elif [[ $host = nech \|\| $host = necriam ]]
3583	then
3584	(( ii = nodes ))
3585	if [[ $ii = 1 ]]
3586	then
3587	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3588	export MPIPROGINF=YES
3589	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3590	echo "*** execution on single node with mpirun"
3591	mpirun -np $numprocs ./a.out $ROPTS
3592	else
3593	(( i = 0 ))
3594	while (( i < ii ))
3595	do
3596	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3597	(( i = i + 1 ))
3598	done
3599
3600	echo "#!/bin/sh" > mpi_exec_shell
3601	echo " " >> mpi_exec_shell
3602	echo "set -u" >> mpi_exec_shell
3603	echo "F_ERRCNT=0" >> mpi_exec_shell
3604	echo "MPIPROGINV=YES" >> mpi_exec_shell
3605	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3606	echo "cpurest=$cpurest" >> mpi_exec_shell
3607	echo "fname=$fname" >> mpi_exec_shell
3608	echo "localhost=$localhost" >> mpi_exec_shell
3609	echo "return_addres=$return_addres" >> mpi_exec_shell
3610	echo "return_username=$return_username" >> mpi_exec_shell
3611	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3612	echo "write_binary=$write_binary" >> mpi_exec_shell
3613	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3614	echo " " >> mpi_exec_shell
3615	echo "export F_ERRCNT" >> mpi_exec_shell
3616	echo "export MPIPROGINV" >> mpi_exec_shell
3617	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3618	echo "export cpurest" >> mpi_exec_shell
3619	echo "export fname" >> mpi_exec_shell
3620	echo "export localhost" >> mpi_exec_shell
3621	echo "export return_addres" >> mpi_exec_shell
3622	echo "export return_username" >> mpi_exec_shell
3623	echo "export tasks_per_node" >> mpi_exec_shell
3624	echo "export write_binary" >> mpi_exec_shell
3625	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3626	echo " " >> mpi_exec_shell
3627	echo "exec ./a.out" >> mpi_exec_shell
3628
3629	chmod u+x mpi_exec_shell
3630	export MPIPROGINF=YES
3631	mpirun -f multinode_config &
3632	wait
3633
3634	fi
3635	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3636	then
3637
3638	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3639	# DOES NOT EXIST
3640	if [[ $host != lcsgih && $host != lcsgib ]]
3641	then
3642	if [[ -f $hostfile ]]
3643	then
3644	cp $hostfile hostfile
3645	(( ii = $numprocs / $threads_per_task ))
3646	else
3647	(( ii = 1 ))
3648	while (( ii <= $numprocs / $threads_per_task ))
3649	do
3650	echo $localhost_realname >> hostfile
3651	(( ii = ii + 1 ))
3652	done
3653	fi
3654	eval zeile=\"`head -n $ii hostfile`\"
3655	printf "\n *** running on: $zeile"
3656	fi
3657
3658	(( ii = $numprocs / $threads_per_task ))
3659	export OMP_NUM_THREADS=$threads_per_task
3660	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3661	if [[ $threads_per_task != 1 ]]
3662	then
3663	# increase stack size to unlimited, because large runs
3664	# may abort otherwise
3665	ulimit -Ss unlimited
3666	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3667	fi
3668	if [[ $run_coupled_model = false ]]
3669	then
3670	if [[ "$ocean_file_appendix" = true ]]
3671	then
3672	echo "precursor_ocean" > runfile_atmos
3673	else
3674	echo "precursor_atmos" > runfile_atmos
3675	fi
3676	printf "\n\n"
3677	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3678	then
3679	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3680	then
3681	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3682	# export MPI_DSM_DISTRIBUTE=1
3683	# MPI_DSM_CPULIST: pin MPI processes to cores
3684	if [[ $use_openmp = false ]]
3685	then
3686	if [[ "$sgi_feature" = ice2 ]]
3687	then
3688	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3689	else
3690	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3691	fi
3692	else
3693	unset MPI_DSM_CPULIST
3694	fi
3695	# MPI_IB_RAILS: use both IB rails on ICE2
3696	export MPI_BUFS_PER_HOST=512
3697	export MPI_IB_RAILS=2
3698	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3699	export MPI_CONNECTIONS_THRESHOLD=8192
3700	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3701	export MPI_TYPE_DEPTH=20
3702	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3703	export MPI_GROUP_MAX=64
3704	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3705	if [[ $use_openmp = true ]]
3706	then
3707	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3708	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3709	else
3710	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3711	fi
3712
3713	# next is test for openmp usage
3714	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3715	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3716	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3717	then
3718	export MV2_NUM_PORTS=2
3719	# The default setting of MV2_CPU_MAPPING gives best results
3720	# export MV2_ENABLE_AFFINITY=1
3721	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3722	# if [[ "$sgi_feature" = ice2 ]]
3723	# then
3724	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3725	# else
3726	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3727	# fi
3728	if [[ $use_openmp = true ]]
3729	then
3730	unset MV2_CPU_MAPPING
3731	export MV2_ENABLE_AFFINITY=0
3732	fi
3733	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3734	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3735	if [[ $use_openmp = true ]]
3736	then
3737	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3738	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3739	else
3740	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3741	fi
3742	elif [[ "$mpilib" = impi ]]
3743	then
3744	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3745	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3746	fi
3747	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3748	then
3749	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3750	elif [[ $host = lcflow ]]
3751	then
3752	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3753	else
3754	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3755	fi
3756	else
3757
3758	# currently there is no full MPI-2 support on ICE and XT4
3759	(( iia = $numprocs_atmos / $threads_per_task ))
3760	(( iio = $numprocs_ocean / $threads_per_task ))
3761	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3762	printf "\n using $coupled_mode coupling"
3763	printf "\n\n"
3764
3765	if [[ $coupled_mode = "mpi2" ]]
3766	then
3767	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3768	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3769	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3770	then
3771
3772	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3773	then
3774	# export MPI_LAUNCH_TIMEOUT=360
3775	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3776	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3777	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3778	then
3779	# ulimit -s 300000 # A too large stack size causes problems
3780	# export MV2_NUM_PORTS=2
3781	# export MV2_CPU_MAPPING=0:1:2:3
3782	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3783	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3784	fi
3785
3786	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3787	then
3788
3789	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3790	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3791
3792	else
3793	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3794	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3795	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3796	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3797	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3798	fi
3799	wait
3800
3801	else
3802
3803	echo "coupled_run $iia $iio" > runfile_atmos
3804	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3805	then
3806
3807	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3808	then
3809	# export MPI_LAUNCH_TIMEOUT=360
3810	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3811	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3812	then
3813	# ulimit -s 300000 # A too large stack size causes problems
3814	# export MV2_NUM_PORTS=2
3815	# export MV2_CPU_MAPPING=0:1:2:3
3816	mpiexec ./a.out $ROPTS < runfile_atmos
3817	fi
3818
3819	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3820	then
3821
3822	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3823
3824	elif [[ $host = lck \|\| $host = lckordi ]]
3825	then
3826	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3827	fi
3828	wait
3829	fi
3830
3831	fi
3832	elif [[ $host = decalpha ]]
3833	then
3834	dmpirun -np $numprocs a.out $ROPTS
3835	elif [[ $host = lckyoto ]]
3836	then
3837	set -xv
3838	export P4_RSHCOMMAND=plesh
3839	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3840	if [[ "$ENVIRONMENT" = BATCH ]]
3841	then
3842	if [[ "$cond2" = fujitsu ]]
3843	then
3844	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3845	elif [[ "cond2" = pgi ]]
3846	then
3847	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3848	else
3849	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3850	fi
3851	else
3852	if [[ "$cond2" = "" ]]
3853	then
3854	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3855	else
3856	mpirun -np $numprocs ./a.out $ROPTS
3857	fi
3858	fi
3859	set +xv
3860	elif [[ $host = lctit ]]
3861	then
3862	export OMP_NUM_THREADS=$threads_per_task
3863	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3864	if [[ "$threads_per_task" != 1 ]]
3865	then
3866	export MV2_ENABLE_AFFINITY=0
3867	fi
3868	echo "----- PBS_NODEFILE content:"
3869	cat $PBS_NODEFILE
3870	echo "-----"
3871	(( ii = $numprocs / $threads_per_task ))
3872	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3873	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3874	else
3875	mpprun -n $numprocs a.out $ROPTS
3876	fi
3877	[[ $? != 0 ]] && execution_error=true
3878
3879
3880	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3881	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3882	then
3883	apprentice
3884	fi
3885	else
3886	a.out $ROPTS
3887	fi
3888	fi
3889	if [[ $? != 0 \|\| $execution_error = true ]]
3890	then
3891
3892	# ABBRUCH BEI LAUFZEITFEHLER
3893	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3894	printf "\n +++ runtime error occured"
3895	locat=execution
3896	exit
3897	else
3898	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3899	printf "\n$striche\n *** execution finished \n"
3900
3901	# Stop the dvr streaming server and process the dvr output in order
3902	# to create dvrs- and html-files containing all streams
3903	if [[ "$dvrserver_id" != "" ]]
3904	then
3905	kill $dvrserver_id
3906	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3907
3908	# If there is a directory, data have been output by the
3909	# streaming server. Otherwise, user has chosen dvrp_output=local
3910	if [[ -d DATA_DVR ]]
3911	then
3912
3913	# Add the current dvr configuration file to the dvr output
3914	# directory
3915	cp .dvrserver.config DATA_DVR
3916
3917	# Process the dvr output (option -s for also generating
3918	# sequence mode data)
3919	process_dvr_output -d DATA_DVR -f $fname -s
3920
3921	else
3922
3923	# Process the local output
3924	process_dvr_output -l -d DATA_DVR -f $fname
3925
3926	fi
3927
3928	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3929	then
3930
3931	# Process dvr output generated in local mode (dvrp_output=local)
3932	process_dvr_output -l -d DATA_DVR -f $fname
3933
3934	fi
3935	fi
3936
3937
3938
3939	# Call of combine_plot_fields in order to merge single files written
3940	# by each PE into one file.
3941	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3942	then
3943	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3944	printf "\n 2d- and/or 3d-data may be incomplete!"
3945	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3946	else
3947	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3948	combine_plot_fields${block}.x
3949	fi
3950
3951
3952
3953	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3954	(( i = 0 ))
3955	while (( i < ioc ))
3956	do
3957	(( i = i + 1 ))
3958	if (( i == 1 ))
3959	then
3960	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3961	fi
3962	printf "\n >>> ${out_command[$i]}"
3963	eval ${out_command[$i]}
3964	if (( i == ioc ))
3965	then
3966	printf "\n$striche\n"
3967	fi
3968	done
3969
3970
3971	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3972	if [[ $do_trace = true ]]
3973	then
3974	printf "\n\n"
3975	ls -al
3976	fi
3977
3978
3979
3980	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3981	(( i = 0 ))
3982	while (( i < iout ))
3983	do
3984	(( i = i + 1 ))
3985	if (( i == 1 ))
3986	then
3987	printf "\n\n *** saving OUTPUT-files:\n$striche"
3988	fi
3989
3990	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3991	files_for_pes=false; filetyp=file
3992	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3993	then
3994	files_for_pes=true; filetyp=directory
3995	actionout[$i]=""
3996	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3997	then
3998	actionout[$i]=""
3999	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4000	then
4001	files_for_pes=true; filetyp=directory
4002	actionout[$i]="ar"
4003	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4004	then
4005	actionout[$i]="ar"
4006	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4007	then
4008	files_for_pes=true; filetyp=directory
4009	actionout[$i]="fl"
4010	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4011	then
4012	actionout[$i]="fl"
4013	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4014	then
4015	files_for_pes=true; filetyp=directory
4016	actionout[$i]="tr"
4017	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4018	then
4019	actionout[$i]="tr"
4020	fi
4021
4022	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4023	then
4024	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4025	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4026	then
4027	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4028	else
4029
4030
4031	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4032	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4033	# REMOTE-RECHNUNGEN
4034	if [[ "${actionout[$i]}" = tr ]]
4035	then
4036	if [[ $localhost != $fromhost ]]
4037	then
4038	if [[ $files_for_pes = false ]]
4039	then
4040	cps=""
4041	cst=""
4042	else
4043	cps=-c
4044	cst="/"
4045	fi
4046	if [[ $localhost = nech ]]
4047	then
4048
4049	# TRANSFER IN EIGENSTAENDIGEM JOB
4050	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4051	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4052	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4053	if [[ $files_for_pes = false ]]
4054	then
4055	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4056	else
4057	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4058	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4059	fi
4060
4061	echo "set -x" > transfer_${localout[$i]}
4062	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4063
4064	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4065	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4066	printf "\n or higher cycle\n"
4067	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4068
4069	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4070
4071	if [[ $localhost = nech ]]
4072	then
4073	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4074	else
4075	if [[ "$LOGNAME" = b323013 ]]
4076	then
4077	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4078	else
4079	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4080	fi
4081	fi
4082
4083	else
4084
4085	# TRANSFER INNERHALB DIESES JOBS
4086	transfer_failed=false
4087	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4088	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4089	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4090	[[ $? != 0 ]] && transfer_failed=true
4091
4092	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4093	# LOKALER MASCHINE ANLEGEN
4094	if [[ $transfer_failed = true ]]
4095	then
4096	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4097	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4098
4099	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4100	# ANLEGEN.
4101	eval local_catalog=${pathout[$i]}
4102	if [[ ! -d $local_catalog ]]
4103	then
4104	printf " *** local directory does not exist. Trying to create:\n"
4105	printf " $local_catalog \n"
4106	mkdir -p $local_catalog
4107	fi
4108	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4109	transfer_problems=true
4110	fi
4111	fi
4112	else
4113
4114	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4115	actionout[$i]=""
4116	fi
4117	fi
4118
4119
4120	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4121	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4122	# REMOTE-RECHNUNGEN
4123	if [[ "${actionout[$i]}" = tra ]]
4124	then
4125	if [[ $localhost != $fromhost ]]
4126	then
4127	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4128	then
4129
4130	# TRANSFER IN EIGENSTAENDIGEM JOB
4131	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4132	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4133	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4134	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4135
4136	echo "set -x" > transfer_${localout[$i]}
4137	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4138
4139	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4140	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4141	printf "\n or higher cycle\n"
4142	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4143
4144	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4145
4146	if [[ $localhost = nech ]]
4147	then
4148	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4149	else
4150	if [[ $LOGNAME = b323013 ]]
4151	then
4152	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4153	else
4154	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4155	fi
4156	fi
4157
4158	else
4159
4160	# TRANSFER INNERHALB DIESES JOBS
4161	transfer_failed=false
4162	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4163	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4164	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4165	[[ $? != 0 ]] && transfer_failed=true
4166
4167	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4168	# LOKALER MASCHINE ANLEGEN
4169	if [[ $transfer_failed = true ]]
4170	then
4171	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4172	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4173
4174	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4175	# ANLEGEN
4176	eval local_catalog=${pathout[$i]}
4177	if [[ ! -d $local_catalog ]]
4178	then
4179	printf " *** local directory does not exist. Trying to create:\n"
4180	printf " $local_catalog \n"
4181	mkdir -p $local_catalog
4182	fi
4183
4184	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4185	transfer_problems=true
4186	fi
4187	fi
4188	else
4189
4190	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4191	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4192	actionout[$i]=a
4193	fi
4194	fi
4195
4196
4197	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4198	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4199	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4200	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4201	if [[ "${actionout[$i]}" = fl ]]
4202	then
4203	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4204	chmod g+rx $tmp_data_catalog
4205	if [[ $files_for_pes = false ]]
4206	then
4207	printf "\n >>> OUTPUT: ${localout[$i]} to"
4208	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4209	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4210	else
4211	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4212	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4213	mkdir $tmp_data_catalog/${frelout[$i]}
4214	cd ${localout[$i]}
4215	for file in $(ls *)
4216	do
4217	ln -f $file $tmp_data_catalog/${frelout[$i]}
4218	done
4219	cd $TEMPDIR
4220	fi
4221
4222
4223	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4224	if [[ $store_on_archive_system = true ]]
4225	then
4226
4227	if [[ $archive_system = asterix ]]
4228	then
4229	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4230	if [[ $files_for_pes = false ]]
4231	then
4232	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4233	else
4234	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4235	fi
4236	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4237	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4238	echo "then" >> archive_${frelout[$i]}
4239	echo " do_stageout=false" >> archive_${frelout[$i]}
4240	echo "else" >> archive_${frelout[$i]}
4241	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4242	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4243	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4244	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4245	if [[ $files_for_pes = false ]]
4246	then
4247	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4248	else
4249	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4250	fi
4251	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4252	echo "fi" >> archive_${frelout[$i]}
4253	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4254	elif [[ $archive_system = DMF ]]
4255	then
4256	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4257	if [[ $files_for_pes = false ]]
4258	then
4259	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4260	locat=DMF
4261	exit
4262	else
4263	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4264	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4265	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4266	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4267	fi
4268	elif [[ $archive_system = tivoli ]]
4269	then
4270	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4271	if [[ $files_for_pes = false ]]
4272	then
4273	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4274	echo "set -x" >> archive_${frelout[$i]}
4275	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4276	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4277	else
4278
4279	echo "set -x" >> archive_${frelout[$i]}
4280	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4281	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4282	cd $tmp_data_catalog
4283	all_files=`ls -1 ${frelout[$i]}/*`
4284	cd - > /dev/null
4285	(( inode = 0 ))
4286	(( tp1 = tasks_per_node + 1 ))
4287	while (( inode < nodes ))
4288	do
4289	# echo "*** all_files = \"$all_files\" "
4290	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4291	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4292	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4293	# echo "*** files = \"$files\" "
4294	# echo "*** all_files = \"$all_files\" "
4295	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4296	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4297	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4298	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4299	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4300	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4301	(( inode = inode + 1 ))
4302	done
4303	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4304	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4305	fi
4306	elif [[ $archive_system = ut ]]
4307	then
4308	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4309	if [[ $files_for_pes = false ]]
4310	then
4311	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4312	echo "set -x" >> archive_${frelout[$i]}
4313	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4314	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4315	else
4316
4317	echo "set -x" >> archive_${frelout[$i]}
4318	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4319	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4320	cd $tmp_data_catalog
4321	all_files=`ls -1 ${frelout[$i]}/*`
4322	cd - > /dev/null
4323	(( inode = 0 ))
4324	(( tp1 = tasks_per_node + 1 ))
4325	while (( inode < nodes ))
4326	do
4327	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4328	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4329	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4330	(( inode = inode + 1 ))
4331	done
4332	fi
4333	elif [[ $archive_system = none ]]
4334	then
4335	printf " +++ archiving on $localhost not available!\n"
4336	fi
4337
4338	if [[ $archive_system != none ]]
4339	then
4340	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4341	then
4342	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4343	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4344	elif [[ $localhost = nech ]]
4345	then
4346	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4347	fi
4348	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4349	fi
4350	else
4351	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4352	fi
4353
4354
4355	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4356	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4357	if [[ $files_for_pes = false ]]
4358	then
4359	cat /dev/null > ${pathout[$i]}
4360	else
4361	mkdir -p ${pathout[$i]}
4362	fi
4363
4364	fi
4365
4366
4367	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4368	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4369	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4370	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4371	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4372	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4373	if [[ "${actionout[$i]}" = ar ]]
4374	then
4375	if [[ $files_for_pes = false ]]
4376	then
4377	printf "\n >>> OUTPUT: ${localout[$i]} to"
4378	printf "\n ${pathout[$i]}"
4379	printf "\n File will be copied to archive-system ($archive_system) !\n"
4380	else
4381	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4382	printf "\n ${pathout[$i]}"
4383	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4384	fi
4385	mv ${localout[$i]} ${frelout[$i]}
4386
4387	file_saved=false
4388
4389	if [[ $archive_system = asterix ]]
4390	then
4391	do_stageout=true
4392	(( stageout_anz = 0 ))
4393	while [[ $do_stageout = true ]]
4394	do
4395	if [[ $files_for_pes = false ]]
4396	then
4397	stageout ${frelout[$i]} > STAGE_OUTPUT
4398	else
4399	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4400	fi
4401	cat STAGE_OUTPUT
4402	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4403	then
4404	file_saved=true
4405	do_stageout=false
4406	else
4407	if [[ $files_for_pes = false ]]
4408	then
4409	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4410	else
4411	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4412	fi
4413	(( stageout_anz = stageout_anz + 1 ))
4414	if (( stageout_anz == 10 ))
4415	then
4416	printf "\n +++ stoped after 10 unsuccessful tries!"
4417	archive_save=false
4418	do_stageout=false
4419	else
4420	printf "\n *** new try to store on archive after 15 min:"
4421	sleep 900
4422	fi
4423	fi
4424	done
4425	elif [[ $archive_system = DMF ]]
4426	then
4427	if [[ $files_for_pes = false ]]
4428	then
4429	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4430	locat=DMF
4431	exit
4432	else
4433	rm -rf $ARCHIVE/${frelout[$i]}
4434	cp -r ${frelout[$i]} $ARCHIVE
4435	fi
4436	file_saved=true
4437	elif [[ $archive_system = tivoli ]]
4438	then
4439	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4440	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4441	# GELEGT WERDEN
4442	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4443	chmod g+rx $tmp_data_catalog
4444	if [[ $files_for_pes = false ]]
4445	then
4446	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4447	else
4448	mkdir $tmp_data_catalog/${frelout[$i]}
4449	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4450	fi
4451
4452	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4453	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4454	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4455	if [[ $files_for_pes = false ]]
4456	then
4457	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4458	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4459	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4460	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4461	else
4462	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4463	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4464	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4465	fi
4466
4467	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4468	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4469	file_saved=true
4470
4471	elif [[ $archive_system = ut ]]
4472	then
4473	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4474	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4475	# GELEGT WERDEN
4476	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4477	chmod g+rx $tmp_data_catalog
4478	if [[ $files_for_pes = false ]]
4479	then
4480	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4481	else
4482	mkdir $tmp_data_catalog/${frelout[$i]}
4483	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4484	fi
4485
4486	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4487	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4488	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4489	if [[ $files_for_pes = false ]]
4490	then
4491	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4492	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4494	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4495	else
4496	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4497	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4498	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4499	fi
4500
4501	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4502	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4503	file_saved=true
4504
4505	else
4506	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4507	archive_save=false
4508	fi
4509	if [[ $file_saved = true ]]
4510	then
4511	if [[ $files_for_pes = false ]]
4512	then
4513	cat /dev/null > ${pathout[$i]}
4514	else
4515	mkdir -p ${pathout[$i]}
4516	fi
4517	fi
4518	fi
4519
4520	# APPEND AUF LOKALER MASCHINE
4521	if [[ "${actionout[$i]}" = "a" ]]
4522	then
4523	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4524	then
4525	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4526	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4527	else
4528	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4529	cat ${localout[$i]} >> ${pathout[$i]}
4530	fi
4531	fi
4532
4533	# KOPIEREN AUF LOKALER MASCHINE
4534	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4535	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4536	then
4537
4538	# KOPIEREN AUF EINPROZESSORMASCHINE
4539	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4540	then
4541	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4542	if [[ $link_local_output = true ]]
4543	then
4544	printf " using ln -f\n"
4545	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4546	fi
4547	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4548	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4549	then
4550	if [[ $link_local_output = true ]]
4551	then
4552	printf " ln failed, using cp...\n"
4553	fi
4554	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4555	fi
4556	else
4557	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4558	if [[ $link_local_output = true ]]
4559	then
4560	printf " using ln -f\n"
4561	ln -f ${localout[$i]} ${pathout[$i]}
4562	fi
4563	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4564	if [[ ! -f "${pathout[$i]}" ]]
4565	then
4566	if [[ $link_local_output = true ]]
4567	then
4568	printf " ln failed, using cp...\n"
4569	fi
4570	cp ${localout[$i]} ${pathout[$i]}
4571	fi
4572	fi
4573
4574	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4575	then
4576
4577	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4578	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4579	# WIRD DANN KOPIERT
4580	# PER MOVE UMBENANNT WERDEN
4581	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4582	if [[ $link_local_output = true ]]
4583	then
4584	printf " using ln -f\n"
4585	mkdir ${pathout[$i]}
4586	cd ${localout[$i]}
4587	for file in $(ls *)
4588	do
4589	ln -f $file ${pathout[$i]}
4590	done
4591	cd $TEMPDIR
4592	fi
4593	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4594	if [[ ! -f "${pathout[$i]}/_0000" ]]
4595	then
4596	if [[ $link_local_output = true ]]
4597	then
4598	printf " ln failed for .../_0000, using cp...\n"
4599	fi
4600	cp -r ${localout[$i]} ${pathout[$i]}
4601	fi
4602
4603	fi
4604	fi
4605	done
4606	if (( i != 0 ))
4607	then
4608	if [[ $transfer_problems = true ]]
4609	then
4610	printf "\n$striche\n *** OUTPUT-files saved"
4611	printf "\n +++ WARNING: some data transfers failed! \n"
4612	else
4613	printf "\n$striche\n *** all OUTPUT-files saved \n"
4614	fi
4615	fi
4616
4617
4618	# EVENTUELL FOLGEJOB STARTEN
4619	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4620	if [[ -f CONTINUE_RUN ]]
4621	then
4622
4623	if [[ $archive_save = true ]]
4624	then
4625
4626	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4627	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4628	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4629	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4630	# HANDEN
4631	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4632	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4633	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4634	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4635	then
4636	mc=`echo $mc \| sed 's/#/f/g'`
4637	fi
4638
4639
4640	# JOB STARTEN
4641	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4642	echo " $mc"
4643	printf "\n$striche\n"
4644	if [[ $localhost != $fromhost ]]
4645	then
4646
4647	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4648	then
4649	echo "*** ssh will be used to initiate restart-runs!"
4650	echo " return_addres=\"$return_addres\" "
4651	echo " return_username=\"$return_username\" "
4652	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4653	then
4654	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4655	else
4656	if [[ $localhost = ibmkisti ]]
4657	then
4658	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4659	else
4660	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4661	fi
4662	fi
4663	else
4664	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4665	locat=restart; exit
4666	fi
4667
4668	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4669	# DER AKTUELLE JOB ENDET
4670	if [[ $queue = special1q ]]
4671	then
4672	sleep 120
4673	else
4674	sleep 30
4675	fi
4676
4677	else
4678
4679	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4680	# RUFEN WERDEN, AUSSER AUF lcfimm
4681	cd $LOCAL_PWD
4682	if [[ $localhost = lcfimm ]]
4683	then
4684	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4685	else
4686	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4687	fi
4688	cd - > /dev/null
4689	fi
4690	printf "\n$striche\n *** restart-run initiated \n"
4691
4692
4693	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4694	# GEHOLT WORDEN SIND, LOESCHEN
4695	(( i = 0 ))
4696	while (( i < iin ))
4697	do
4698	(( i = i + 1 ))
4699	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4700	then
4701	rm -r $tmp_data_catalog/${frelin[$i]}
4702	fi
4703	done
4704
4705	else
4706
4707	printf "\n +++ no restart-run possible, since errors occured"
4708	printf "\n during the archive process"
4709	fi
4710
4711	fi
4712
4713
4714
4715	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4716	if [[ "$email_notification" != "none" ]]
4717	then
4718
4719	if [[ $localhost != $fromhost ]]
4720	then
4721	if [[ -f CONTINUE_RUN ]]
4722	then
4723	echo "PALM restart run necessary" > email_text
4724	echo "description header of actual run:" >> email_text
4725	cat CONTINUE_RUN >> email_text
4726	echo "mrun-command to restart:" >> email_text
4727	echo "$mc" >> email_text
4728	else
4729	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4730	fi
4731	mail $email_notification < email_text
4732	printf "\n *** email notification sent to \"$email_notification\" "
4733	fi
4734	fi
4735
4736
4737
4738	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4739	cd $HOME
4740	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4741
4742	else
4743
4744
4745	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4746	# CHENDE AKTIONEN DURCHGEFUEHRT
4747
4748	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4749	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4750	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4751	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4752	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4753	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4754	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4755	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4756	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4757	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4758	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4759	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4760	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4761	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4762	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4763	if [[ $use_openmp = true ]]
4764	then
4765	mrun_com=${mrun_com}" -O $threads_per_task"
4766	fi
4767	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4768	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4769	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4770	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4771	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4772	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4773	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4774	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4775	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4776	if [[ $do_remote = true ]]
4777	then
4778	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4779	fi
4780
4781
4782	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4783	jobfile=jobfile.$RANDOM
4784
4785
4786	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4787	echo "mkdir $TEMPDIR" >> $jobfile
4788	echo "cd $TEMPDIR" >> $jobfile
4789
4790
4791	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4792	if [[ $do_trace = true ]]
4793	then
4794	echo "set -x" >> $jobfile
4795	else
4796	echo "set +vx" >> $jobfile
4797	fi
4798
4799
4800	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4801	# DATEI FUER DEN JOB
4802	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4803	then
4804
4805	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4806	# KOPIEREN
4807	if [[ $restart_run != true ]]
4808	then
4809	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4810	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4811	fi
4812
4813	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4814	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4815	echo "set -x" >> $jobfile
4816	if [[ $host = $localhost ]]
4817	then
4818	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4819	else
4820	if [[ $host != ibmkisti ]]
4821	then
4822	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4823	else
4824	# on KISTI's IBM firewall is only opened on interactive node
4825	echo "localdir=\`pwd\`" >> $jobfile
4826	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4827	fi
4828	fi
4829	echo "export SOURCES_COMPLETE=true" >> $jobfile
4830
4831	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4832	# ARBEITSVERZEICHNIS VERSCHIEBEN
4833	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4834	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4835	echo "execute_mrun=true" >> $jobfile
4836	echo " " >> $jobfile
4837
4838	else
4839
4840	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4841	# SOWIE GEGEBENENFALLS DES MAKEFILES
4842	if [[ $do_compile = true ]]
4843	then
4844
4845	source_catalog=SOURCES_FOR_RUN_$fname
4846
4847	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4848	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4849	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4850	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4851	echo "export SOURCES_COMPLETE=true" >> $jobfile
4852	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4853
4854	for filename in $source_list
4855	do
4856	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4857	echo "cat > $filename << \"%END%\"" >> $jobfile
4858	cat $source_catalog/$filename >> $jobfile
4859	echo " " >> $jobfile
4860	echo "%END%" >> $jobfile
4861	echo " " >> $jobfile
4862	done
4863
4864	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4865	echo "cat > Makefile << \"%END%\"" >> $jobfile
4866	cat $source_catalog/Makefile >> $jobfile
4867	echo " " >> $jobfile
4868	echo "%END%" >> $jobfile
4869	echo " " >> $jobfile
4870
4871	echo "cd - > /dev/null" >> $jobfile
4872
4873	fi
4874
4875
4876	# ABSPEICHERN DER KONFIGURATIONSDATEI
4877	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4878	echo "cat > $config_file << \"%END%\"" >> $jobfile
4879	cat $config_file >> $jobfile
4880	echo "%END%" >> $jobfile
4881	echo " " >> $jobfile
4882
4883
4884	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4885	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4886	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4887	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4888	echo "%END%" >> $jobfile
4889	echo "chmod u+x $mrun_script_name" >> $jobfile
4890	echo "execute_mrun=true" >> $jobfile
4891	echo " " >> $jobfile
4892
4893	fi
4894
4895
4896	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4897	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4898	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4899	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4900	if [[ $do_remote = true ]]
4901	then
4902	(( i = 0 ))
4903	while (( i < iin ))
4904	do
4905	(( i = i + 1 ))
4906	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4907	if [[ "${transin[$i]}" = job ]]
4908	then
4909	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4910	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4911	echo " " >> $jobfile
4912	echo "%END%" >> $jobfile
4913	else
4914	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4915	fi
4916
4917	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4918	echo "if [[ \$? = 1 ]]" >> $jobfile
4919	echo "then" >> $jobfile
4920	echo " echo \" \" " >> $jobfile
4921	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4922	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4923	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4924	echo " execute_mrun=false" >> $jobfile
4925	echo "fi" >> $jobfile
4926	done
4927	fi
4928
4929	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4930	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4931	echo "LOCAL_PWD=$working_directory" >> $jobfile
4932	echo "export LOCAL_PWD" >> $jobfile
4933
4934	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4935	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4936	echo "export LOCAL_MRUN_PATH" >> $jobfile
4937
4938	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4939	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4940	then
4941	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4942	fi
4943
4944	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4945	echo "set -x" >> $jobfile
4946	echo "queue=$queue" >> $jobfile
4947	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4948
4949	echo 'ls -al; echo `pwd`' >> $jobfile
4950	echo "cd \$HOME" >> $jobfile
4951	echo "rm -rf $TEMPDIR" >> $jobfile
4952
4953
4954
4955
4956	# JOB PER SUBJOB STARTEN
4957	if [[ $silent = false ]]
4958	then
4959	printf "\n "
4960	else
4961	printf "\n\n"
4962	fi
4963
4964	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4965	rm -rf $jobfile
4966
4967
4968	fi # ENDE REMOTE-TEIL
4969
4970
4971
4972	# ENDE DER PROZEDUR

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