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source: palm/trunk/SCRIPTS/mrun @ 850

Last change on this file since 850 was 848, checked in by raasch, 12 years ago
mrun tasks_per_node divisor check not for lcflow
Property svn:keywords set to `Id Rev`
File size: 187.9 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 848 2012-03-12 07:49:32Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
245	# Farah queue for lcsgi to testq, since bigq is not
246	# available on ice1
247	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
248	# file, which is generated for the namelist file check
249	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
250	# 22/02/12 - Siggi - -s info updated
251	# 22/02/12 - Siggi - case "-s WP" removed
252	# 28/02/12 - BjornM - further adjustments for namelist file check
253	# 09/03/12 - Siggi - -T option not obligatory for lcflow
254	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
255
256
257
258	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
259
260	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
261	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
262	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
263
264	AddFilenames=""
265	additional_conditions=""
266	add_source_path=""
267	afname=""
268	archive_save=true
269	archive_system=none
270	check_namelist_files=true
271	compiler_name=""
272	cond1=""
273	cond2=""
274	config_file=.mrun.config
275	coupled_dist=""
276	coupled_mode="mpi1"
277	cpp_opts=""
278	cpp_options=""
279	cpumax=0
280	cpurest=0
281	delete_temporary_catalog=true
282	do_batch=false
283	do_compile=true
284	do_remote=false
285	do_stagein=true
286	do_stageout=true
287	do_trace=false
288	email_notification="none"
289	exclude=""
290	executable=""
291	execution_error=false
292	fimm=false
293	fname=test
294	fromhost=""
295	global_revision=""
296	group_number=none
297	host=""
298	host_file=""
299	hp=""
300	ignore_archive_error=false
301	input_list=""
302	interpreted_config_file=""
303	job_catalog="~/job_queue"
304	job_on_file=""
305	keep_data_from_previous_run=false
306	link_local_input=false
307	link_local_output=false
308	localhost_realname=$(hostname)
309	local_compile=false
310	local_dvrserver_running=.FALSE.
311	locat=normal
312	mainprog=""
313	makefile=""
314	max_par_io_str=""
315	mc=$0
316	while [[ $(echo $mc \| grep -c "/") != 0 ]]
317	do
318	mc=`echo $mc \| cut -f2- -d"/"`
319	done
320	module_calls=""
321	mrun_script_name=$mc
322	netcdf_inc=""
323	netcdf_lib=""
324	netcdf_support=false
325	node_usage=default
326	numprocs=""
327	numprocs_atmos=0
328	numprocs_ocean=0
329	OOPT=""
330	openmp=false
331	output_list=""
332	package_list=""
333	punkte="..........................................................."
334	p3d_suffix=""
335	queue=none
336	read_from_config=""
337	restart_run=false
338	if [[ `hostname` = rte10 ]]
339	then
340	return_addres=133.5.185.60
341	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
342	elif [[ `hostname` = climate0 ]]
343	then
344	return_addres=165.132.26.68
345	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
346	else
347	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
348	fi
349	return_password=""
350	return_username=$LOGNAME
351	remotecall=false
352	remote_username=""
353	run_coupled_model=false
354	run_mode=""
355	scirocco=false
356	store_on_archive_system=false
357	striche=" ----------------------------------------------------------------------------"
358	silent=false
359	source_list=""
360	source_path=SOURCE
361	tasks_per_node=""
362	threads_per_task=1
363	tmpcreate=false
364	tmp_data_catalog=""
365	transfer_problems=false
366	usern=$LOGNAME
367	use_openmp=false
368	working_directory=`pwd`
369	TOPT=""
370	XOPT=""
371	zeit=$( date \| cut -c 12-19 )
372
373	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
374	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
375
376	typeset -R30 calltime
377	typeset -L20 spalte1
378	typeset -L40 spalte2
379	typeset -L60 spalte3
380	typeset -L35 string1=`date`
381	typeset -L12 string2=$usern
382	typeset -L12 string3=$localhost_realname
383	typeset -L12 string4
384	typeset -L12 string5
385	typeset -L30 version="MRUN 2.0 Rev$Rev: 848 $"
386
387
388
389	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
390	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
391
392	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
393	# EXPORTIERT WERDEN
394	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
395	export group_number input_list memory numprocs output_list queue run_mode
396
397
398
399	# FEHLERBEHANDLUNG
400	# BEI EXIT:
401	trap 'rm -rf $working_directory/tmp_mrun
402	if [[ $locat != localhost ]]
403	then
404	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
405	# then
406	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
407	#MRUN-calls on $localhost
408	#
409	#date and time user localhost remotehost termination mrun-command
410	#--------------------------------------------------------------------------------------------------------------------
411	#%STATEND%
412	# chmod 666 ${mrun_path}/statistik/mrun_statistik
413	# fi
414	#
415	# # EINTRAG IN DIE STATISTIK-DATEI
416	# string4=$host
417	# string5=$locat
418	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
419	# then
420	# if [[ $do_batch = true ]]
421	# then
422	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
423	# else
424	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
425	# fi
426	# fi
427	echo " " > /dev/null
428	fi
429
430	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
431	then
432
433	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
434	(( i = 0 ))
435	while (( i < iec ))
436	do
437	(( i = i + 1 ))
438	printf "\n *** Execution of ERROR-command:\n"
439	printf " >>> ${err_command[$i]}\n"
440	eval ${err_command[$i]}
441	done
442	if [[ -n $interpreted_config_file ]] then
443	rm -rf $interpreted_config_file
444	fi
445	if [[ -n .mrun_environment ]] then
446	rm -rf .mrun_environment
447	fi
448	if [[ $tmpcreate = true ]]
449	then
450	printf "\n *** Contents of \"$TEMPDIR\":\n"
451	ls -al; cd
452	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
453	fi
454	if [[ "$dvrserver_id" != "" ]]
455	then
456	echo "+++ killing dvrserver_id=$dvrserver_id"
457	kill $dvrserver_id
458	fi
459	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
460	then
461	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
462	fi
463	printf "\n\n+++ MRUN killed \n\n"
464	elif [[ $locat != control_c ]]
465	then
466	printf "\n\n --> all actions finished\n\n"
467	printf " Bye, bye $usern !!\n\n"
468	fi' exit
469
470
471	# BEI TERMINAL-BREAK:
472	trap 'rm -rf $working_directory/tmp_mrun
473	rm -rf $working_directory/tmp_check_namelist_files
474	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
475	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
476	then
477	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
478	fi
479	if [[ "$dvrserver_id" != "" ]]
480	then
481	echo "+++ killing dvrserver_id=$dvrserver_id"
482	kill $dvrserver_id
483	fi
484	printf "\n+++ MRUN killed by \"^C\" \n\n"
485	locat=control_c
486	exit
487	' 2
488
489
490	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
491	# BEEN SET
492	if [[ "$PALM_BIN" = "" ]]
493	then
494	printf "\n +++ environment variable PALM_BIN has not been set"
495	printf "\n please set it to the directory where the PALM scripts are located"
496	locat=palm_bin; exit
497	fi
498	export PATH=$PALM_BIN:$PATH
499
500
501
502	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
503	# FUER FOLGEJOBS BENOETIGT WIRD
504	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
505	do
506	case $option in
507	(a) afname=$OPTARG;;
508	(A) store_on_archive_system=true; mc="$mc -A";;
509	(b) do_batch=true; mc="$mc -b";;
510	(B) delete_temporary_catalog=false; mc="$mc -B";;
511	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
512	(C) restart_run=true; mc="$mc -C";;
513	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
514	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
515	(F) job_on_file="-D"; mc="$mc -F";;
516	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
517	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
518	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
519	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
520	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
521	(I) ignore_archive_error=true; mc="$mc -I";;
522	(k) keep_data_from_previous_run=true; mc="$mc -k";;
523	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
524	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
525	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
526	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
527	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
528	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
529	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
530	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
531	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
532	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
533	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
534	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
535	(S) read_from_config=false; mc="$mc -S";;
536	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
537	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
538	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
539	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
540	(v) silent=true; mc="$mc -v";;
541	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
542	(x) do_trace=true;set -x; mc="$mc -x";;
543	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
544	(y) ocean_file_appendix=true; mc="$mc -y";;
545	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
546	(z) check_namelist_files=false; mc="$mc -z";;
547	(\?) printf "\n +++ unknown option $OPTARG \n"
548	printf "\n --> type \"$0 ?\" for available options \n"
549	locat=parameter;exit;;
550	esac
551	done
552
553
554	# EVTL. POSITIONSPARAMETER EINLESEN
555	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
556	shift OPTIND-1
557
558
559	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
560	if [[ "$1" = "?" ]]
561	then
562	(printf "\n *** mrun can be called as follows:\n"
563	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
564	printf "\n Description of available options:\n"
565	printf "\n Option Description Default-Value"
566	printf "\n -a base name of input files equiv. -d"
567	printf "\n -A archiving when using file-attribute fl"
568	printf "\n -b batch-job on local machine ---"
569	printf "\n -B do not delete temporary directory at end ---"
570	printf "\n -c configuration file .mrun.config"
571	printf "\n -d base name of files attached to program test"
572	printf "\n -D preprocessor(cpp)-directives \"\" "
573	printf "\n -F create remote job file only ---"
574	printf "\n -h execution host $localhost_realname"
575	printf "\n -i INPUT control list \"\" "
576	printf "\n -I archiving errors of previous batch-jobs"
577	printf "\n will be ignored"
578	printf "\n -k keep data from previous run"
579	printf "\n -K additional conditions for controling"
580	printf "\n usage of conditional code and"
581	printf "\n env-variables in configuration file \"\" "
582	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
583	printf "\n -M Makefile name Makefile"
584	printf "\n -n node usage (shared/not_shared) depending on -h"
585	printf "\n -o OUTPUT control list \"\" "
586	printf "\n -O use OpenMP ---"
587	printf "\n -p software package list \"\" "
588	printf "\n -q queue \"$queue\" "
589	printf "\n -r run control list (combines -i -o) \"\" "
590	printf "\n -s filenames of routines to be compiled \"\" "
591	printf "\n must end with .f, .f90, .F, or .c !"
592	printf "\n use \"..\" for more than one file and wildcards"
593	printf "\n -s LM compiles all locally modified files"
594	printf "\n -S config file interpreted by shellscript ---"
595	printf "\n -t allowed cpu-time in seconds (batch) 0"
596	printf "\n -T tasks per node depending on -h"
597	printf "\n -u username on remote machine \"\" "
598	printf "\n -v no prompt for confirmation ---"
599	printf "\n -w maximum parallel io streams as given by -X"
600	printf "\n -x tracing of mrun for debug purposes ---"
601	printf "\n -X # of processors (on parallel machines) 1"
602	printf "\n -y add appendix \"_O\" to all local output"
603	printf "\n files (ocean precursor runs followed by"
604	printf "\n coupled atmosphere-ocean runs) ---"
605	printf "\n -Y run coupled model, \"#1 #2\" with"
606	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
607	printf "\n -z no parameter file check ---"
608	printf "\n "
609	printf "\n Possible values of positional parameter <modus>:"
610	printf "\n \"?\" - this outline \n\n") \| more
611	exit
612	elif [[ "$1" != "" ]]
613	then
614	printf "\n +++ positional parameter $1 unknown \n"
615	locat=parameter; exit
616	fi
617
618
619
620	# KURZE STARTMELDUNG
621	printf "\n*** $version "
622	printf "\n will be executed. Please wait ..."
623
624
625
626	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
627	if [[ ! -f $config_file ]]
628	then
629	printf "\n\n +++ configuration file: "
630	printf "\n $config_file"
631	printf "\n does not exist"
632	locat=connect; exit
633	fi
634
635
636	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
637	line=""
638	grep "%host_identifier" $config_file > tmp_mrun
639	while read line
640	do
641	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
642	then
643	HOSTNAME=`echo $line \| cut -d" " -s -f2`
644	host_identifier=`echo $line \| cut -d" " -s -f3`
645	if [[ $localhost_realname = $HOSTNAME ]]
646	then
647	localhost=$host_identifier
648	break
649	fi
650	fi
651	done < tmp_mrun
652
653	if [[ "$localhost" = "" ]]
654	then
655	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
656	printf "\n for local host \"$localhost_realname\"."
657	printf "\n Please add line"
658	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
659	printf "\n to the configuration file."
660	locat=localhost; exit
661	fi
662
663
664	# HOSTSPEZIFISCHE VARIABLEN SETZEN
665	case $localhost_realname in
666	(r1\|r2\|h01\|b01) archive_system=tivoli;;
667	(cs*) archive_system=ut;;
668	(fimm.bccs.uib.no) fimm=true;;
669	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
670	(scirocco) scirocco=true;;
671	esac
672
673
674
675	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
676	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
677	[[ "$afname" = "" ]] && afname=$fname
678
679
680	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
681	if [[ "$run_mode" != "" ]]
682	then
683	input_list="$input_list $run_mode"
684	output_list="$output_list $run_mode"
685	fi
686
687
688	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
689	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
690	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
691	# STARTET)
692	if [[ "$fromhost" = "" ]]
693	then
694	fromhost=$localhost
695	fi
696
697
698	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
699	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
700	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
701	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
702	if [[ -n $host && "$host" != $localhost ]]
703	then
704	do_batch=true
705	do_remote=true
706	case $host in
707	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
708	(*) printf "\n"
709	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
710	printf "\n is not available"
711	locat=nqs; (( iec = 0 )); exit;;
712	esac
713	else
714	host=$localhost
715	fi
716
717
718	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
719	if [[ -n $additional_conditions ]]
720	then
721	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
722	cond1=`echo $additional_conditions \| cut -d" " -f1`
723	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
724	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
725	if [[ -n $dummy ]]
726	then
727	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
728	locat=options; exit
729	fi
730	block=_$cond1
731	[[ -n $cond2 ]] && block=${block}_$cond2
732	fi
733
734
735	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
736	if [[ $run_coupled_model = true ]]
737	then
738
739	if [[ -n $coupled_dist ]]
740	then
741
742	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
743	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
744
745	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
746	then
747
748	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
749	printf "\n PEs (total) : $numprocs"
750	printf "\n PEs (atmosphere): $numprocs_atmos"
751	printf "\n PEs (ocean) : $numprocs_ocean"
752	locat=coupling; exit
753
754	fi
755
756	else
757
758	(( numprocs_ocean = $numprocs / 2 ))
759	(( numprocs_atmos = $numprocs / 2 ))
760
761	fi
762	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
763
764	# GET coupled_mode FROM THE CONFIG FILE
765	line=""
766	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
767	while read line
768	do
769	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
770	then
771	coupled_mode="mpi2"
772	fi
773	done < tmp_mrun
774
775	fi
776
777
778	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
779	# ARCHIVIERUNG FEHLGESCHLAGEN IST
780	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
781	then
782	if [[ $ignore_archive_error = false ]]
783	then
784	printf "\n +++ data archiving of previous run failed"
785	printf "\n see directory \~/job_queue on remote machine"
786	locat=archive; exit
787	else
788	printf "\n +++ warning: data archiving in a previous run failed"
789	printf "\n MRUN continues, trying to get backup copy"
790	fi
791	fi
792
793
794
795	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
796	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
797	if [[ "$read_from_config" = false ]]
798	then
799
800	[[ $silent = false ]] && printf "\n Reading the configuration file... "
801	while read zeile
802	do
803	[[ $silent = false ]] && printf "."
804
805
806	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
807	# ERSETZEN
808	eval zeile=\"$zeile\"
809
810
811	# INTERPRETATION DER ZEILE
812	if [[ "$(echo $zeile)" = "" ]]
813	then
814	# LEERZEILE, KEINE AKTION
815	continue
816
817	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
818	then
819
820	# ZEILE IST KOMMENTARZEILE
821	true
822
823	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
824	then
825
826	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
827	zeile=$(echo $zeile \| cut -c2-)
828	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
829	var=`echo $zeile \| cut -d" " -f1`
830	value=`echo $zeile \| cut -d" " -s -f2`
831	for_host=`echo $zeile \| cut -d" " -s -f3`
832	for_cond1=`echo $zeile \| cut -d" " -s -f4`
833	for_cond2=`echo $zeile \| cut -d" " -s -f5`
834
835	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
836	then
837
838	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
839	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
840	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
841
842
843	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
844	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
845	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
846	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
847	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
848	# KONFIGURATIONSDATEI
849	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
850	then
851	eval $var=\$value
852
853	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
854	if [[ $do_trace = true ]]
855	then
856	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
857	fi
858	fi
859
860	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
861	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
862	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
863	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
864	if [[ $var = host ]]
865	then
866	if [[ -n $host && "$host" != $localhost ]]
867	then
868	do_batch=true
869	do_remote=true
870	case $host in
871	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
872	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
873	printf "\n is not available"
874	locat=nqs; exit;;
875	esac
876	else
877	host=$localhost
878	fi
879	fi
880
881	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
882	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
883	# DEN PROGRAMMEN BENOETIGT WERDEN
884	export $var
885	fi
886
887
888
889
890	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
891	then
892
893	# ZEILE DEFINIERT ERROR-KOMMANDO
894	(( iec = iec + 1 ))
895	zeile=$(echo $zeile \| cut -c4-)
896	err_command[$iec]="$zeile"
897
898	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
899	then
900
901	# ZEILE DEFINIERT INPUT-KOMMANDO
902	(( iic = iic + 1 ))
903	zeile=$(echo $zeile \| cut -c4-)
904	in_command[$iic]="$zeile"
905
906	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
907	then
908
909	# ZEILE DEFINIERT OUTPUT-KOMMANDO
910	(( ioc = ioc + 1 ))
911	zeile=$(echo $zeile \| cut -c4-)
912	out_command[$ioc]="$zeile"
913
914	else
915
916	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
917	# s2a: in/out - Feld
918	# s2b: loc - Feld (optional)
919	# s2c: tr/ar - Feld (optional)
920	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
921	s1=`echo $zeile \| cut -d" " -f1`
922	s2=`echo $zeile \| cut -d" " -s -f2`
923	s2a=$(echo $s2 \| cut -d":" -f1)
924	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
925	then
926	s2b=""
927	s2c=""
928	else
929	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
930	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
931	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
932	fi
933	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
934	s3=`echo $zeile \| cut -d" " -f3`
935	s4=`echo $zeile \| cut -d" " -s -f4`
936	s5=`echo $zeile \| cut -d" " -s -f5`
937	s6=`echo $zeile \| cut -d" " -s -f6`
938
939
940	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
941	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
942	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
943	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
944	# HANDEN SEIN MUSS (D.H. s2b = loc)
945	IFSALT="$IFS"; IFS="$IFS:"
946	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
947	then
948	found=false
949	for actual in $input_list
950	do
951	for formal in $s3
952	do
953	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
954	done
955	done
956	if [[ $found = true ]]
957	then
958	(( iin = iin + 1 ))
959	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
960	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
961	extin[$iin]=$s6
962	fi
963	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
964	then
965	found=false
966	for actual in $output_list
967	do
968	for formal in $s3
969	do
970	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
971	done
972	done
973	if [[ $found = true ]]
974	then
975	(( iout = iout + 1 ))
976	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
977	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
978	fi
979	elif [[ "$s2a" != in && "$s2a" != out ]]
980	then
981	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
982	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
983	locat=connect; exit
984	fi
985	IFS="$IFSALT"
986	fi
987	done < $config_file
988
989	else
990
991
992	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
993	[[ $silent = false ]] && printf "..."
994	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
995	export interpreted_config_file=.icf.$RANDOM
996
997
998
999	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1000	# VERFUEGUNG STELLEN
1001	cat > .mrun_environment << %%END%%
1002	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1003	config_file = '$config_file', do_remote = '$do_remote',
1004	do_trace = '$do_trace', host = '$host',
1005	input_list = '$input_list', icf = '$interpreted_config_file',
1006	localhost = '$localhost', output_list = '$output_list' /
1007
1008	%%END%%
1009
1010	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1011	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1012	mrun_memory=$memory
1013	mrun_group_number=$group_number
1014	mrun_cpumax=$cpumax
1015	mrun_numprocs=$numprocs
1016
1017	if [[ $localhost_realname = "sx-fep" ]]
1018	then
1019	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1020	else
1021
1022	if [[ "$host" != $localhost ]]
1023	then
1024
1025	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1026	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1027	if [[ $? != 0 ]]
1028	then
1029	printf "\n\n +++ no interpret_config found"
1030	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1031	locat=interpret_config; exit
1032	fi
1033	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1034	$interpret_config_executable
1035
1036	else
1037
1038	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1039	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1040	then
1041	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1042	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1043	locat=interpret_config; exit
1044	else
1045	interpret_config${block}.x
1046	fi
1047
1048	fi
1049	fi
1050	rm .mrun_environment
1051
1052
1053	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1054	chmod u+x $interpreted_config_file
1055	export PATH=$PATH:.
1056	. $interpreted_config_file
1057	rm $interpreted_config_file
1058
1059
1060	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1061	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1062	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1063	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1064	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1065	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1066	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1067
1068	fi
1069
1070
1071	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1072	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1073	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1074	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1075	if [[ "$SOURCES_COMPLETE" = "" ]]
1076	then
1077
1078	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1079	# VEREINBART WURDE
1080	source_path=""
1081	line=""
1082	grep "%source_path" $config_file > tmp_mrun
1083	while read line
1084	do
1085	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1086	then
1087	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1088	then
1089	global_source_path=`echo $line \| cut -d" " -f2`
1090	fi
1091	fi
1092	done < tmp_mrun
1093
1094	line=""
1095	found=false
1096	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1097	while read line
1098	do
1099	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1100	then
1101	if [[ $found = true ]]
1102	then
1103	printf "\n\n +++ more than one source path found in configuration file"
1104	printf "\n for local host \"$localhost\" "
1105	locat=source_path; exit
1106	fi
1107	source_path=`echo $line \| cut -d" " -f2`
1108	found=true
1109	fi
1110	done < tmp_mrun
1111	rm tmp_mrun
1112
1113	if [[ "$source_path" = "" ]]
1114	then
1115	if [[ "$global_source_path" != "" ]]
1116	then
1117	source_path=$global_source_path
1118	else
1119	printf "\n\n +++ no source path found in configuration file"
1120	printf "\n for local host \"$localhost\" "
1121	locat=source_path; exit
1122	fi
1123	fi
1124	eval source_path=$source_path
1125
1126	if [[ ! -d $source_path ]]
1127	then
1128	printf "\n\n +++ source path \"$source_path\" on local host"
1129	printf "\n \"$localhost\" does not exist"
1130	locat=source_path; exit
1131	fi
1132
1133	fi
1134
1135
1136	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1137	# DURCH OPTION -G MITGETEILT)
1138	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1139	then
1140	global_revision=`svnversion $source_path 2>/dev/null`
1141	global_revision="Rev: $global_revision"
1142	fi
1143
1144
1145	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1146	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1147	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1148	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1149	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1150	if [[ -n $host && "$host" != $localhost ]]
1151	then
1152	do_batch=true
1153	do_remote=true
1154	case $host in
1155	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1156	(*) printf "\n"
1157	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1158	printf "\n is not available"
1159	locat=nqs; (( iec = 0 )); exit;;
1160	esac
1161	else
1162	host=$localhost
1163	fi
1164
1165
1166	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1167	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1168	then
1169
1170	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1171	if [[ ! -n $numprocs ]]
1172	then
1173	printf "\n"
1174	printf "\n +++ option \"-K parallel\" requires additional specification"
1175	printf "\n of the number of processors to be used by"
1176	printf "\n mrun-option \"-X\" or by environment-variable"
1177	printf "\n \"numprocs\" in the configuration file"
1178	locat=numprocs; (( iec = 0 )); exit
1179	fi
1180
1181	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1182	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1183	# GESAMTPROZESSORANZAHL IST
1184	if [[ "$tasks_per_node" = "" && $host != lcflow ]]
1185	then
1186	printf "\n"
1187	printf "\n +++ option \"-T\" (tasks per node) is missing"
1188	printf "\n set -T option or define tasks_per_node in the config file"
1189	locat=tasks_per_node; (( iec = 0 )); exit
1190	fi
1191	if [[ $host != lcflow ]]
1192	then
1193	(( ival = $tasks_per_node ))
1194	(( pes = numprocs ))
1195	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1196	# then
1197	# (( pes = pes - 1 ))
1198	# fi
1199	(( ii = pes / ival ))
1200	if (( pes - ii * ival > 0 ))
1201	then
1202	printf "\n"
1203	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1204	printf "\n divisor of the total number of processors (option \"-X\")"
1205	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1206	locat=tasks_per_node; (( iec = 0 )); exit
1207	fi
1208	fi
1209
1210
1211	# IBMY HAT NUR EINEN KNOTEN
1212	if [[ $host = ibmy ]]
1213	then
1214	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1215	then
1216	printf "\n"
1217	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1218	printf "\n total number of processors (option \"-X\")"
1219	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1220	locat=tasks_per_node; (( iec = 0 )); exit
1221	fi
1222	fi
1223
1224
1225	# SETTINGS FOR SUBJOB-COMMAND
1226	TOPT="-T $tasks_per_node"
1227	OOPT="-O $threads_per_task"
1228
1229	# GESAMTZAHL DER KNOTEN BESTIMMEN
1230	if [[ "$tasks_per_node" != "" ]]
1231	then
1232	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1233	fi
1234
1235	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1236	# SETZEN
1237	if [[ $node_usage = default ]]
1238	then
1239	if [[ $host = ibms ]]
1240	then
1241	node_usage=shared
1242	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1243	then
1244	node_usage=singlejob
1245	else
1246	node_usage=not_shared
1247	fi
1248	fi
1249
1250	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1251	then
1252	printf "\n"
1253	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1254	printf "\n \"shared\" or \"not_shared\""
1255	locat=tasks_per_node; (( iec = 0 )); exit
1256	fi
1257
1258	fi
1259
1260	# PRUEFEN, OB HOSTFILE EXISTIERT
1261	if [[ -n $hostfile ]]
1262	then
1263	if [[ ! -f $hostfile ]]
1264	then
1265	printf "\n"
1266	printf "\n +++ hostfile \"$hostfile\" does not exist"
1267	locat=hostfile; exit
1268	fi
1269	fi
1270
1271	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1272	if [[ $host = ibmy && $do_remote = false ]]
1273	then
1274	if [[ ! -f $HOME/.rhosts ]]
1275	then
1276	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1277	printf "\n\n *** file:"
1278	printf "\n $HOME/.rhosts"
1279	printf "\n was created\n"
1280	fi
1281	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1282	then
1283	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1284	printf "\n\n *** file:"
1285	printf "\n $HOME/.rhosts"
1286	printf "\n was extended by the name of the current host\n"
1287	fi
1288	fi
1289
1290
1291	# Set default value for the maximum number of parallel io streams
1292	if [[ "$maximum_parallel_io_streams" = "" ]]
1293	then
1294	maximum_parallel_io_streams=$numprocs
1295	fi
1296
1297
1298	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1299	if [[ $queue = none ]]
1300	then
1301	case $host in
1302	(ibmh) queue=no_class;;
1303	(ibmkisti) queue=class.32plus;;
1304	(ibmy) queue=parallel;;
1305	(lckyoto) queue=ph;;
1306	(lcsgib) queue=testq;;
1307	(lcsgih) queue=testq;;
1308	(lctit) queue=S;;
1309	(nech) queue=none;;
1310	(necriam) queue=SP;;
1311	(unics) queue=unics;;
1312	esac
1313	fi
1314
1315
1316	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1317	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1318	# ERMITTELN
1319	(( i = 0 ))
1320	while (( i < iin ))
1321	do
1322	(( i = i + 1 ))
1323	(( maxcycle = 0 ))
1324
1325	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1326	if [[ "${actionin[$i]}" = di ]]
1327	then
1328	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1329	# REM-MASCHINE AUSWERTEN
1330	eval filename=${pathin[$i]}/${endin[$i]}
1331	else
1332	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1333	# REM-MASCHINE AUSWERTEN
1334	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1335	fi
1336
1337	# PRUEFEN AUF VORHANDENSEIN
1338	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1339	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1340	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1341	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1342	then
1343	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1344	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1345	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1346	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1347	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1348	if [[ "${transin[$i]}" != "locopt" ]]
1349	then
1350	printf "\n\n +++ INPUT-file: "
1351	if [[ "${extin[$i]}" = "" ]]
1352	then
1353	printf "\n $filename"
1354	else
1355	printf "\n $filename.${extin[$i]}"
1356	fi
1357	printf "\n does not exist\n"
1358	locat=input; exit
1359	else
1360	transin[$i]="unavailable"
1361	fi
1362	else
1363
1364	# ZYKLUSNUMMER FESTSTELLEN
1365	ls -1 -d $filename > filelist 2>/dev/null
1366	ls -1 -d $filename.* >> filelist 2>/dev/null
1367	while read zeile
1368	do
1369	cycle=$(print $zeile \| cut -f2 -d".")
1370	if [[ "$cycle" = "$zeile" ]]
1371	then
1372	(( icycle = 0 ))
1373	elif [[ "$cycle" = "${extin[$i]}" ]]
1374	then
1375	(( icycle = 0 ))
1376	else
1377	(( icycle = $cycle ))
1378	fi
1379	if (( icycle > maxcycle ))
1380	then
1381	(( maxcycle = icycle ))
1382	file_to_be_used=$zeile
1383	fi
1384	done <filelist
1385	rm filelist
1386
1387	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1388	if (( maxcycle > 0 ))
1389	then
1390	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1391	then
1392	filename=${filename}.$maxcycle.${extin[$i]}
1393	else
1394	filename=${filename}.$maxcycle
1395	fi
1396	else
1397	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1398	then
1399	filename=${filename}.${extin[$i]}
1400	fi
1401	fi
1402
1403	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1404	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1405	absnamein[$i]=$filename
1406	if (( maxcycle > 0 ))
1407	then
1408	if [[ "${actionin[$i]}" = di ]]
1409	then
1410	frelin[$i]=${endin[$i]}.$maxcycle
1411	else
1412	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1413	fi
1414	else
1415	if [[ "${actionin[$i]}" = di ]]
1416	then
1417	frelin[$i]=${endin[$i]}
1418	else
1419	frelin[$i]=${afname}${endin[$i]}
1420	fi
1421	fi
1422
1423	fi
1424	done
1425
1426
1427	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1428	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1429	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1430	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1431	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1432	(( i = 0 ))
1433	while (( i < iout ))
1434	do
1435	(( i = i + 1 ))
1436	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1437	then
1438	if [[ "${actionout[$i]}" = tr ]]
1439	then
1440	actionout[$i]=""
1441	elif [[ "${actionout[$i]}" = trpe ]]
1442	then
1443	actionout[$i]=pe
1444	elif [[ "${actionout[$i]}" = tra ]]
1445	then
1446	actionout[$i]=a
1447	fi
1448	(( maxcycle = 0 ))
1449	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1450	eval catalogname=${pathout[$i]}
1451	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1452	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1453	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1454	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1455	then
1456
1457	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1458	if cat /dev/null > $filename
1459	then
1460	rm $filename
1461	else
1462
1463	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1464	if [[ ! -d $catalogname ]]
1465	then
1466	if mkdir -p $catalogname
1467	then
1468	printf "\n\n *** directory:"
1469	printf "\n $catalogname"
1470	printf "\n was created\n"
1471	else
1472	printf "\n\n +++ OUTPUT-file:"
1473	printf "\n $filename"
1474	printf "\n cannot be created, because directory does not exist"
1475	printf "\n and cannot be created either"
1476	printf "\n"
1477	locat=output ; exit
1478	fi 2>/dev/null
1479	else
1480	printf "\n\n +++ OUTPUT-file:"
1481	printf "\n $filename"
1482	printf "\n cannot be created, although directory exists"
1483	printf "\n"
1484	locat=output ; exit
1485	fi
1486	fi 2>/dev/null
1487	else
1488
1489	# ZYKLUSNUMMER FESTSTELLEN
1490	ls -1 -d $filename > filelist 2>/dev/null
1491	ls -1 -d $filename.* >> filelist 2>/dev/null
1492	while read zeile
1493	do
1494	cycle=$(print $zeile \| cut -f2 -d".")
1495	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1496	then
1497	(( icycle = 1 ))
1498	else
1499	(( icycle = $cycle + 1 ))
1500	fi
1501	if (( icycle > maxcycle ))
1502	then
1503	(( maxcycle = icycle ))
1504	fi
1505	done <filelist
1506	rm filelist
1507	fi
1508
1509	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1510	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1511	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1512	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1513	if [[ "${actionout[$i]}" != a ]]
1514	then
1515	if (( maxcycle > 0 ))
1516	then
1517	filename=${filename}.$maxcycle
1518	if cat /dev/null > $filename
1519	then
1520	rm $filename
1521	else
1522	printf "\n +++ OUTPUT-file:"
1523	printf "\n $filename"
1524	printf "\n cannot be created"
1525	locat=output ; exit
1526	fi
1527	fi
1528	else
1529	(( maxcycle = maxcycle - 1 ))
1530	if (( maxcycle > 0 ))
1531	then
1532	filename=${filename}.$maxcycle
1533	fi
1534	fi
1535
1536	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1537	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1538	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1539	pathout[$i]=$filename
1540	if (( maxcycle > 0 ))
1541	then
1542	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1543	else
1544	frelout[$i]=${fname}${endout[$i]}
1545	fi
1546
1547	fi
1548	done
1549
1550
1551	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1552	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1553	then
1554	if [[ "$dvr_inc" = "" ]]
1555	then
1556	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1557	printf "\n This is required for the dvrp_graphics package.\n"
1558	locat=dvr; exit
1559	fi
1560	if [[ "$dvr_lib" = "" ]]
1561	then
1562	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1563	printf "\n This is required for the dvrp_graphics package.\n"
1564	locat=dvr; exit
1565	fi
1566	fi
1567
1568
1569	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1570	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1571	# UEBERSETZT ZU WERDEN)
1572	if [[ "$mainprog" = "" && "$executable" = "" ]]
1573	then
1574	printf "\n +++ neither main program nor executable defined"
1575	locat=source; exit
1576	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1577	then
1578	printf "\n +++ main program as well as executable defined"
1579	locat=source; exit
1580	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1581	then
1582	do_compile=false
1583	fi
1584
1585
1586	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1587	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1588	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1589	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1590	then
1591	rm -rf SOURCES_FOR_RUN_$fname
1592	mkdir SOURCES_FOR_RUN_$fname
1593	fi
1594
1595
1596	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1597	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1598	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1599	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1600	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1601	then
1602
1603	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1604
1605	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1606	then
1607
1608	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1609	source_list=""
1610	cd $source_path
1611
1612
1613	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1614	if [[ ! -d .svn ]]
1615	then
1616	printf "\n\n +++ source directory"
1617	printf "\n \"$source_path\" "
1618	printf "\n is not under control of \"subversion\"."
1619	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1620	fi
1621
1622
1623	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1624	Filenames=""
1625	svn status > tmp_mrun
1626	while read line
1627	do
1628	firstc=`echo $line \| cut -c1`
1629	if [[ $firstc = M \|\| $firstc = "?" ]]
1630	then
1631	Name=`echo "$line" \| cut -c8-`
1632	extension=`echo $Name \| cut -d. -f2`
1633	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1634	then
1635	Filenames="$Filenames "$Name
1636	fi
1637	fi
1638	done < tmp_mrun
1639
1640
1641	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1642	for dateiname in $Filenames
1643	do
1644	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1645	source_list=$source_list"$dateiname "
1646	done
1647
1648	cd - > /dev/null
1649
1650
1651	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1652	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1653	# VORHANDEN
1654	elif [[ "$source_list" != "" && $restart_run != true ]]
1655	then
1656
1657	cd $source_path
1658
1659	for filename in $source_list
1660	do
1661
1662	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1663	if [[ $(print $filename \| grep -c "/") != 0 ]]
1664	then
1665	printf "\n +++ source code file: $filename"
1666	printf "\n must not contain (\"/\") "
1667	locat=source; exit
1668	fi
1669
1670	if [[ ! -f $filename ]]
1671	then
1672	printf "\n +++ source code file: $filename"
1673	printf "\n does not exist"
1674	locat=source; exit
1675	else
1676	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1677	fi
1678
1679	done
1680
1681	cd - > /dev/null
1682
1683	fi
1684
1685
1686	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1687	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1688	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1689	if [[ $restart_run != true ]]
1690	then
1691
1692	if [[ ! -f "$source_path/$mainprog" ]]
1693	then
1694	printf "\n\n +++ main program: $mainprog"
1695	printf "\n does not exist in source directory"
1696	printf "\n \"$source_path\"\n"
1697	locat=source; exit
1698	else
1699	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1700	then
1701	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1702	source_list=${mainprog}" $source_list"
1703	fi
1704	fi
1705	fi
1706
1707
1708	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1709	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1710	if [[ "$restart_run" != true ]]
1711	then
1712	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1713	if [[ ! -f $makefile ]]
1714	then
1715	printf "\n +++ file \"$makefile\" does not exist"
1716	locat=make; exit
1717	else
1718	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1719	fi
1720	fi
1721
1722
1723	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1724	if [[ $restart_run != true && "$add_source_path" != "" ]]
1725	then
1726
1727	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1728	if [[ ! -d $add_source_path ]]
1729	then
1730	printf "\n\n +++ WARNING: additional source code directory"
1731	printf "\n \"$add_source_path\" "
1732	printf "\n does not exist or is not a directory."
1733	printf "\n No source code will be used from this directory!\n"
1734	add_source_path=""
1735	sleep 3
1736	else
1737
1738	cd $add_source_path
1739	found=false
1740
1741	Names=$(ls -1 *.f90 2>&1)
1742	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1743	Names=$(ls -1 *.F90 2>&1)
1744	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1745	Names=$(ls -1 *.F 2>&1)
1746	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1747	Names=$(ls -1 *.f 2>&1)
1748	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1749	Names=$(ls -1 *.c 2>&1)
1750	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1751
1752	cd - > /dev/null
1753	cd SOURCES_FOR_RUN_$fname
1754
1755	# COPY MAKEFILE IF EXISTING
1756	if [[ -f $add_source_path/Makefile ]]
1757	then
1758	printf "\n\n *** user Makefile from directory"
1759	printf "\n \"$add_source_path\" is used \n"
1760	sleep 1
1761	cp $add_source_path/Makefile .
1762	fi
1763
1764	for dateiname in $AddFilenames
1765	do
1766	if [[ -f $dateiname ]]
1767	then
1768	printf "\n +++ source code file \"$dateiname\" found in additional"
1769	printf "\n source code directory \"$add_source_path\" "
1770	printf "\n but was also given with option \"-s\" which means that it should be taken"
1771	printf "\n from directory \"$source_path\"."
1772	locat=source; exit
1773	fi
1774
1775	cp $add_source_path/$dateiname .
1776	source_list="$source_list $dateiname"
1777
1778	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1779	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1780	then
1781	printf "\n\n +++ user file \"$dateiname\" "
1782	printf "\n is not listed in Makefile \n"
1783	locat=source; exit
1784	else
1785
1786	# Default User-Interface von der Liste entfernen, falls Datei
1787	# ein User-Interface enthaelt
1788	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1789	# then
1790	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1791	# then
1792	# rm -rf user_interface.f90
1793	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1794	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1795	# printf "\n since a user-interface is found in file"
1796	# printf "\n \"$add_source_path/$dateiname\" \n"
1797	# sleep 3
1798	# else
1799	if [[ $found = false ]]
1800	then
1801	found=true
1802	printf "\n\n *** following user file(s) added to the"
1803	printf " files to be translated:\n "
1804	fi
1805	printf "$dateiname "
1806	sleep 0.5
1807	fi
1808	done
1809	[[ $found = true ]] && printf "\n"
1810	cd - > /dev/null
1811	fi
1812	fi
1813
1814
1815	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1816	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1817	if [[ $restart_run != true && -n $package_list ]]
1818	then
1819
1820	cd $source_path
1821
1822	for package in $package_list
1823	do
1824
1825	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1826
1827	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1828	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1829	# LIEFERT
1830	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1831
1832
1833	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1834	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1835	for source_list_name in $package_source_list
1836	do
1837	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1838	then
1839
1840	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1841	ending=`echo $source_list_name \| cut -f2 -d.`
1842	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1843	then
1844	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1845	source_list="$source_list $source_list_name"
1846	fi
1847	fi
1848	done
1849	done
1850
1851	cd - > /dev/null
1852	fi
1853
1854
1855	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1856	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1857	# if [[ "$restart_run" != true ]]
1858	# then
1859	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1860	# if [[ ! -f $makefile ]]
1861	# then
1862	# printf "\n +++ file \"$makefile\" does not exist"
1863	# locat=make; exit
1864	# else
1865	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1866	# fi
1867	# fi
1868
1869	fi # do_compile=true
1870
1871
1872	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1873	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1874	if [[ $do_compile = true ]]
1875	then
1876
1877	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1878	# ZUSAMMENSETZEN
1879	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1880	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1881	then
1882	cpp_options="${cpp_options},-D__ibm=__ibm"
1883	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1884	then
1885	cpp_options="$cpp_options -D__nec"
1886	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1887	then
1888	cpp_options="$cpp_options -D__lc"
1889	else
1890	cpp_options="$cpp_options -D__$localhost"
1891	fi
1892
1893	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1894	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1895	then
1896	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1897	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1898	else
1899	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1900	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1901	fi
1902
1903	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1904	if [[ -n $package_list ]]
1905	then
1906	for package in $package_list
1907	do
1908	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1909	then
1910	if [[ $package != "dvrp_graphics+1PE" ]]
1911	then
1912	cpp_options="${cpp_options},-D__$package=__$package"
1913	else
1914	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1915	export use_seperate_pe_for_dvrp_output=true
1916	fi
1917	else
1918	if [[ $package != "dvrp_graphics+1PE" ]]
1919	then
1920	cpp_options="$cpp_options -D__$package"
1921	else
1922	cpp_options="$cpp_options -D__dvrp_graphics"
1923	export use_seperate_pe_for_dvrp_output=true
1924	fi
1925	fi
1926	done
1927	fi
1928
1929	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1930	if [[ -n $cpp_opts ]]
1931	then
1932	for popts in $cpp_opts
1933	do
1934	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1935	then
1936	cpp_options="${cpp_options},-D__$popts=__$popts"
1937	else
1938	cpp_options="$cpp_options -D__$popts"
1939	fi
1940	done
1941	fi
1942
1943	else
1944
1945
1946	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1947	if [[ $do_remote = false ]]
1948	then
1949	if [[ ! -f $executable ]]
1950	then
1951	printf "\n +++ executable file: $executable"
1952	printf "\n does not exist"
1953	locat=executable; exit
1954	fi
1955	fi
1956	fi
1957
1958
1959	# JOBMODUS FESTSTELLEN
1960	if [[ "$ENVIRONMENT" = BATCH ]]
1961	then
1962	jobmo=BATCH
1963	else
1964	jobmo=INTERACTIVE
1965	fi
1966
1967
1968	# no interactive runs on lctit
1969	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1970	then
1971	printf "\n +++ no interactive runs allowed on host \"$host\" "
1972	printf "\n please submit batch job using mrun option \"-b\" \n"
1973	locat=normal; exit
1974	fi
1975
1976
1977	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1978	# DURCH BENUTZER ANDERWEITIG VEREINBART
1979	if [[ "$compiler_name" = "" ]]
1980	then
1981
1982	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1983	locat=compiler_name; exit
1984
1985	fi
1986
1987
1988	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1989	[[ $localhost = necriam ]] && compiler_name=mpif90
1990
1991
1992
1993	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1994	kennung=$RANDOM
1995	if [[ "$tmp_user_catalog" = "" ]]
1996	then
1997	if [[ $localhost = ibmh ]]
1998	then
1999	tmp_user_catalog=$SCRATCH
2000	elif [[ $localhost = nech ]]
2001	then
2002	tmp_user_catalog=$WRKSHR
2003	else
2004	tmp_user_catalog=/tmp
2005	fi
2006	fi
2007	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2008
2009
2010	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2011	# BESTIMMEN
2012	if [[ "$tmp_data_catalog" = "" ]]
2013	then
2014	if [[ $localhost = nech ]]
2015	then
2016	tmp_data_catalog=$WRKSHR/mrun_restart_data
2017	else
2018	tmp_data_catalog=/tmp/mrun_restart_data
2019	fi
2020	fi
2021
2022
2023	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2024	# ERSETZEN
2025	if [[ $do_remote = false && $do_compile = true ]]
2026	then
2027	eval fopts=\"$fopts\"
2028	eval lopts=\"$lopts\"
2029	fi
2030
2031
2032
2033	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2034	fopts="$fopts $netcdf_inc $dvr_inc"
2035	lopts="$lopts $netcdf_lib $dvr_lib"
2036	ROPTS="$ropts"
2037	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2038	then
2039	XOPT="-X $numprocs"
2040	fi
2041
2042
2043
2044	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2045	# GRAMM BENOETIGT
2046	done=false
2047	while [[ $done = false ]]
2048	do
2049	cputime=$cpumax
2050	if (( $cputime == 0 ))
2051	then
2052	if [[ $do_batch = true ]]
2053	then
2054	printf "\n +++ cpu-time is undefined"
2055	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2056	printf "\n >>> "
2057	read cputime 1>/dev/null 2>&1
2058	else
2059	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2060	fi
2061	else
2062	done=true
2063	fi
2064	cpumax=$cputime
2065	done
2066
2067	(( minuten = cputime / 60 ))
2068	(( sekunden = cputime - minuten * 60 ))
2069
2070
2071	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2072	if [[ $do_batch = true ]]
2073	then
2074	done=false
2075	while [[ $done = false ]]
2076	do
2077	if (( memory == 0 ))
2078	then
2079	printf "\n +++ memory demand is undefined"
2080	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2081	printf "\n >>> "
2082	read memory 1>/dev/null 2>&1
2083	else
2084	done=true
2085	fi
2086	done
2087	fi
2088
2089
2090	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2091	if [[ $do_remote = true && -z $remote_username ]]
2092	then
2093	while [[ -z $remote_username ]]
2094	do
2095	printf "\n +++ username on remote host \"$host\" is undefined"
2096	printf "\n >>> Please type username:"
2097	printf "\n >>> "
2098	read remote_username
2099	done
2100	mc="$mc -u$remote_username"
2101	fi
2102
2103
2104	# set module load command and export for subjob
2105	if [[ "$modules" != "" ]]
2106	then
2107	if [[ $host = lctit ]]
2108	then
2109	export module_calls=". $modules"
2110	else
2111	export module_calls="module load ${modules};"
2112	fi
2113	fi
2114
2115	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2116	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2117	then
2118	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2119	then
2120	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2121	fi
2122	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2123	# then
2124	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2125	# echo "*** module_calls = $module_calls"
2126	# fi
2127	fi
2128
2129
2130	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2131	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2132	then
2133	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2134	then
2135	mpilib=mpt
2136	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2137	then
2138	mpilib=mvapich
2139	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2140	then
2141	mpilib=impi
2142	fi
2143	fi
2144
2145
2146
2147	###########################################################################
2148	# HEADER-AUSGABE
2149	###########################################################################
2150
2151
2152	calltime=$(date)
2153	printf "\n"
2154	# [[ $silent = false ]] && clear
2155	printf "#--------------------------------------------------------------# \n"
2156	printf "\| $version$calltime \| \n"
2157	printf "\| \| \n"
2158	spalte1="called on:"; spalte2=$localhost_realname
2159	printf "\| $spalte1$spalte2 \| \n"
2160	if [[ $local_compile = false ]]
2161	then
2162	if [[ $do_remote = true ]]
2163	then
2164	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2165	else
2166	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2167	fi
2168	else
2169	spalte1="compiling test only!"; spalte2=""
2170	fi
2171	printf "\| $spalte1$spalte2 \| \n"
2172	if [[ -n $numprocs ]]
2173	then
2174	spalte1="number of PEs:"; spalte2=$numprocs
2175	printf "\| $spalte1$spalte2 \| \n"
2176	fi
2177	if [[ -n $tasks_per_node ]]
2178	then
2179	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2180	printf "\| $spalte1$spalte2 \| \n"
2181	fi
2182	if [[ $maximum_parallel_io_streams != $numprocs ]]
2183	then
2184	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2185	printf "\| $spalte1$spalte2 \| \n"
2186	fi
2187	if [[ $use_openmp = true ]]
2188	then
2189	spalte1="threads per task:"; spalte2="$threads_per_task"
2190	printf "\| $spalte1$spalte2 \| \n"
2191	fi
2192	printf "\| \| \n"
2193	if [[ $do_compile = true ]]
2194	then
2195	if [[ "$mopts" != "" ]]
2196	then
2197	spalte1="make options:"; spalte2=$mopts
2198	printf "\| $spalte1$spalte2 \| \n"
2199	zeile=$(echo "$mopts" \| cut -c41-)
2200	while [[ "$zeile" != "" ]]
2201	do
2202	spalte1=""
2203	spalte2=$zeile
2204	printf "\| $spalte1$spalte2 \| \n"
2205	zeile=$(echo "$zeile" \| cut -c41-)
2206	done
2207	fi
2208
2209	spalte1="cpp directives:"; spalte2=$cpp_options
2210	printf "\| $spalte1$spalte2 \| \n"
2211	zeile=$(echo "$cpp_options" \| cut -c41-)
2212	while [[ "$zeile" != "" ]]
2213	do
2214	spalte1=""
2215	spalte2=$zeile
2216	printf "\| $spalte1$spalte2 \| \n"
2217	zeile=$(echo "$zeile" \| cut -c41-)
2218	done
2219
2220	spalte1="compiler options:"; spalte2="$fopts"
2221	printf "\| $spalte1$spalte2 \| \n"
2222	zeile=$(echo "$fopts" \| cut -c41-)
2223	while [[ "$zeile" != "" ]]
2224	do
2225	spalte1=""
2226	spalte2=$zeile
2227	printf "\| $spalte1$spalte2 \| \n"
2228	zeile=$(echo "$zeile" \| cut -c41-)
2229	done
2230
2231	spalte1="linker options:"; spalte2=$lopts
2232	printf "\| $spalte1$spalte2 \| \n"
2233	zeile=$(echo "$lopts" \| cut -c41-)
2234	while [[ "$zeile" != "" ]]
2235	do
2236	spalte1=""
2237	spalte2=$zeile
2238	printf "\| $spalte1$spalte2 \| \n"
2239	zeile=$(echo "$zeile" \| cut -c41-)
2240	done
2241
2242	spalte1="modules to be load:"; spalte2=$modules
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$modules" \| cut -c41-)
2245	while [[ "$zeile" != "" ]]
2246	do
2247	spalte1=""
2248	spalte2=$zeile
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$zeile" \| cut -c41-)
2251	done
2252
2253	spalte1="main program":; spalte2=$mainprog
2254	printf "\| $spalte1$spalte2 \| \n"
2255	else
2256	spalte1=executable:; spalte2=$executable
2257	printf "\| $spalte1$spalte2 \| \n"
2258	fi
2259	printf "\| \| \n"
2260	spalte1="base name of files":; spalte2=$fname
2261	printf "\| $spalte1$spalte2 \| \n"
2262	if [[ $fname != $afname ]]
2263	then
2264	spalte1="base name of input files":; spalte2=$afname
2265	printf "\| $spalte1$spalte2 \| \n"
2266	fi
2267	spalte1="INPUT control list":; spalte2=$input_list
2268	printf "\| $spalte1$spalte2 \| \n"
2269	spalte1="OUTPUT control list":; spalte2=$output_list
2270	printf "\| $spalte1$spalte2 \| \n"
2271
2272	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2273	then
2274	spalte1="memory demand / PE":; spalte2="$memory MB"
2275	printf "\| $spalte1$spalte2 \| \n"
2276	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2277	printf "\| $spalte1$spalte2 \| \n"
2278	fi
2279
2280	if [[ $do_compile = true ]]
2281	then
2282	printf "\| \| \n"
2283	printf "\| Files to be compiled: \| \n"
2284	zeile=$source_list
2285	while [[ "$zeile" != "" ]]
2286	do
2287	spalte3=$zeile
2288	printf "\| $spalte3 \| \n"
2289	zeile=$(echo "$zeile" \| cut -c61-)
2290	done
2291	fi
2292	printf "#--------------------------------------------------------------#"
2293
2294
2295
2296	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2297	if [[ $do_trace = true ]]
2298	then
2299	(( i = 0 ))
2300	while (( i < iin ))
2301	do
2302	(( i = i + 1 ))
2303	if (( i == 1 ))
2304	then
2305	printf "\n\n >>> INPUT-file assignments:\n"
2306	fi
2307	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2308	done
2309	(( i = 0 ))
2310	while (( i < iout ))
2311	do
2312	(( i = i + 1 ))
2313	if (( i == 1 ))
2314	then
2315	printf "\n\n >>> OUTPUT-file assignments:\n"
2316	fi
2317	printf "\n ${localout[$i]} : ${pathout[$i]}"
2318	done
2319	(( i = 0 ))
2320	while (( i < iic ))
2321	do
2322	(( i = i + 1 ))
2323	if (( i == 1 ))
2324	then
2325	printf "\n\n >>> INPUT-commands:\n"
2326	fi
2327	printf "\n ${in_command[$i]}"
2328	done
2329	(( i = 0 ))
2330	while (( i < ioc ))
2331	do
2332	(( i = i + 1 ))
2333	if (( i == 1 ))
2334	then
2335	printf "\n\n >>> OUTPUT-commands:\n"
2336	fi
2337	printf "\n ${out_command[$i]}"
2338	done
2339	fi
2340
2341
2342	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2343	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2344	then
2345	antwort=dummy
2346	printf "\n\n"
2347	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2348	do
2349	printf " >>> everything o.k. (y/n) ? "
2350	read antwort
2351	done
2352	if [[ $antwort = n \|\| $antwort = N ]]
2353	then
2354	locat=user_abort; (( iec = 0 )); exit
2355	fi
2356	if [[ $do_batch = true ]]
2357	then
2358	printf " >>> batch-job will be created and submitted"
2359	else
2360	if [[ $local_compile = false ]]
2361	then
2362	printf " >>> MRUN will now continue to execute on this machine"
2363	else
2364	printf " >>> a test compilation will now be carried out on this machine"
2365	fi
2366	fi
2367	fi
2368
2369	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2370
2371	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2372	check_depository="${working_directory}/trunk/UTIL"
2373	check_sources="${working_directory}/tmp_check_namelist_files"
2374	skip_check=false
2375
2376	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2377	if [[ ! -f $check_depository/check_namelist_files.tar \|\| ! -f $PALM_BIN/check_namelist_files.x ]]
2378	then
2379	skip_check=true
2380
2381	fi
2382
2383	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2384	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2385	then
2386	skip_check=true
2387	fi
2388	if [[ $skip_check == false ]]
2389	then
2390	if [[ $ocean_file_appendix == true ]]
2391	then
2392	d3par_string="d3o#"
2393	d3fpar_string="d3of"
2394	else
2395	d3par_string="d3#"
2396	d3fpar_string="d3f"
2397	fi
2398
2399	tmp_check=${working_directory}/tmp_check
2400
2401	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2402	line=""
2403	found=false
2404	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2405	while read line1
2406	do
2407	line="$line1"
2408	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2409	then
2410	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2411	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2412	found=true
2413	fi
2414	done < $tmp_check
2415
2416	if [[ $found = false ]]
2417	then
2418	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2419
2420	locat=check_namelist; exit
2421	fi
2422
2423	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2424	# NOT NECESSARILY REQUIRED
2425	line=""
2426	found=false
2427	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2428	while read line1
2429	do
2430	line="$line1"
2431	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2432	then
2433	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2434	found=true
2435	fi
2436	done < $tmp_check
2437
2438	if [[ $found = false ]]
2439	then
2440	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2441	fi
2442
2443	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2444	# NOT NECESSARILY REQUIRED
2445	line=""
2446	found=false
2447	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2448	while read line1
2449	do
2450	line="$line1"
2451	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2452	then
2453	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2454	found=true
2455	fi
2456	done < $tmp_check
2457
2458	if [[ $found = false ]]
2459	then
2460	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2461	fi
2462
2463	rm -rf ${working_directory}/tmp_check
2464
2465	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2466	for item in $input_list
2467	do
2468	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2469	then
2470	check_restart=1
2471	else
2472	check_restart=0
2473	fi
2474	done
2475
2476	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2477	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2478	then
2479	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2480	locat=check_namelist; exit
2481	fi
2482
2483	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2484	if [[ $check_restart == 1 ]]
2485	then
2486	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2487	then
2488	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2489	check_restart=0
2490	answer=dummy
2491	printf "\n\n"
2492
2493	if [[ $silent == false ]]
2494	then
2495	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2496	do
2497	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2498	read answer
2499	done
2500	if [[ $answer = a \|\| $answer = A ]]
2501	then
2502	printf "\n +++ Aborting...."
2503	locat=normal; exit
2504	fi
2505	fi
2506	else
2507	check_restart=1
2508	fi
2509	fi
2510
2511	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2512	mkdir $check_sources
2513	cd $check_sources
2514
2515	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2516	if [[ -d $working_directory/USER_CODE/$fname ]]
2517	then
2518	printf "\n\n *** copying files from $check_depository"
2519	cp $check_depository/check_namelist_files.tar ./
2520
2521	printf "\n\n *** untar of makefile and source files in $check_sources"
2522	tar -xf check_namelist_files.tar > /dev/null 2>&1
2523
2524	printf "\n\n *** adding user code."
2525	cp $working_directory/USER_CODE/$fname/* ./
2526	touch check_namelist_files.f90
2527
2528	# GET COMPILER OPTIONS AND PERFORM MAKE
2529	printf "\n\n *** compiling code if necessary...\n"
2530	copts_check="-cpp -D_parallel -D__check"
2531	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2532
2533	# GET MAKE OUTPUT
2534	if [[ $? != 0 ]]
2535	then
2536	printf "\n +++ error during make."
2537	answer=dummy
2538	printf "\n\n"
2539	if [[ $silent == false ]]
2540	then
2541	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2542	do
2543	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2544	read answer
2545	done
2546	if [[ $answer = a \|\| $answer = A ]]
2547	then
2548	printf "\n +++ Aborting..."
2549	rm -rf $check_sources
2550	locat=normal; exit
2551	else
2552	skip_check=true
2553	fi
2554	else
2555	skip_check=true
2556	fi
2557	fi
2558	else
2559	cp $PALM_BIN/check_namelist_files.x ./
2560	fi
2561
2562	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2563	if [[ $check_restart == 1 ]]
2564	then
2565	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2566	fi
2567
2568
2569	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2570	then
2571	printf "\n *** adding topography data"
2572	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2573
2574	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2575	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2576	# WHICH REQUIRE SUFFICIENT MEMORY
2577	ulimit -s unlimited
2578	fi
2579
2580	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2581	cat > ENVPAR << %%END%%
2582	&envpar run_identifier = '$fname', host = '$host',
2583	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2584	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2585	maximum_cpu_time_allowed = ${cpumax}.,
2586	revision = '$global_revision',
2587	local_dvrserver_running = $local_dvrserver_running /
2588
2589	%%END%%
2590
2591	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2592	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2593	printf "\n +++ WARNING: check_namelist_files.x not found."
2594	answer=dummy
2595	printf "\n\n"
2596
2597	if [[ $silent == false ]]
2598	then
2599	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2600	do
2601	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2602	read answer
2603	done
2604	if [[ $answer = a \|\| $answer = A ]]
2605	then
2606	printf "\n +++ Aborting..."
2607	rm -rf $check_sources
2608	locat=normal; exit
2609	else
2610	printf "\n *** Skipping parameter file check."
2611
2612	fi
2613	fi
2614
2615	elif [[ $skip_check == false ]]
2616	then
2617	# STARTING THE PARAMETER FILE CHECK
2618	printf "\n\n *** starting parameter file check..."
2619
2620	# CHECKING THE P3D FILE
2621	printf "\n\n (1) checking $fname$p3d_suffix"
2622	echo "$numprocs 0" > VARIN
2623	errors=`./check_namelist_files.x < VARIN 2>&1`
2624
2625	check_error=false
2626	if [[ "$errors" == "" ]]
2627	then
2628	printf " --> o.k."
2629	else
2630	printf " --> failed."
2631	check_error=true
2632	printf "\n\n $errors"
2633	fi
2634
2635	# CHECKING THE PD3F FILE IF NECESSARY
2636	if [[ $check_restart == 1 && $check_error == false ]]
2637	then
2638	printf "\n\n (2) checking $fname$p3df_suffix"
2639
2640	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2641	found=false
2642	cat PARINF\|while read line
2643	do
2644	line=$(echo $line\|sed 's/ //g')
2645	if [[ $line == "&inipar" ]]
2646	then
2647	start_search=true
2648	fi
2649
2650	if [[ $start_search == true ]]
2651	then
2652	if [[ $line == "initializing_actions='read_restart_data'" ]]
2653	then
2654	found=true
2655	break
2656	fi
2657	fi
2658
2659	if [[ $line == "/" ]]
2660	then
2661	start_search=false
2662	fi
2663
2664	done
2665
2666	if [[ $found = false ]]
2667	then
2668	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2669	printf "\n in &inipar list in $fname$p3df_suffix."
2670	rm -rf $check_sources
2671	locat=check_namelist; exit
2672	fi
2673
2674	echo "$numprocs 1" > VARIN
2675	errors=`./check_namelist_files.x < VARIN 2>&1`
2676
2677	if [[ "$errors" == "" ]]
2678	then
2679	printf " --> o.k."
2680	else
2681	printf " --> failed."
2682	check_error=true
2683	printf "\n\n $errors"
2684	fi
2685	fi
2686
2687	# REPORT ERRORS AND CONTINUE/EXIT
2688	if [[ $check_error == true ]]
2689	then
2690	printf "\n +++ errors found in the parameter file!\n"
2691	answer=dummy
2692	printf "\n\n"
2693
2694	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2695	do
2696	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2697	read answer
2698	done
2699
2700	if [[ $answer = a \|\| $answer = A ]]
2701	then
2702	printf "\n +++ Aborting..."
2703	rm -rf $check_sources
2704	locat=normal; exit
2705	fi
2706	else
2707	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2708	fi
2709	rm -rf $check_sources
2710	fi
2711	else
2712	printf "\n\n +++ skipping parameter file check\n"
2713	fi
2714
2715	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2716	rm -rf $check_sources
2717	cd $working_directory
2718
2719	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2720	# CHENDE AKTIONEN DURCHGEFUEHRT
2721	if [[ $do_batch = false ]]
2722	then
2723
2724
2725	# TEMPORAEREN KATALOG ERZEUGEN
2726	mkdir -p $TEMPDIR
2727	chmod go+rx $TEMPDIR
2728	tmpcreate=true
2729
2730	# set striping on lustre file system
2731	# if [[ $localhost = lcsgih ]]
2732	# then
2733	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2734	# lfs getstripe $TEMPDIR
2735	# fi
2736
2737
2738	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2739	# TEMPORAERES VERZEICHNIS KOPIEREN
2740	if [[ $do_compile = true ]]
2741	then
2742
2743	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2744	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2745	if [[ $localhost = nech ]]
2746	then
2747	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2748	if mkdir -p $TEMPDIR_COMPILE
2749	then
2750	printf "\n *** \"$TEMPDIR_COMPILE\" "
2751	printf "\n is generated as temporary directory for cross compiling\n"
2752	else
2753	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2754	printf "\n needed for cross compilation failed"
2755	locat=compile
2756	exit
2757	fi
2758	else
2759	TEMPDIR_COMPILE=$TEMPDIR
2760	fi
2761
2762
2763	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2764	line=""
2765	grep "%depository_path" $config_file > tmp_mrun
2766	while read line
2767	do
2768	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2769	then
2770	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2771	then
2772	global_depository_path=`echo $line \| cut -d" " -s -f2`
2773	fi
2774	fi
2775	done < tmp_mrun
2776
2777	line=""
2778	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2779	while read line
2780	do
2781	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2782	then
2783	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2784	then
2785	local_depository_path=`echo $line \| cut -d" " -s -f2`
2786	fi
2787	fi
2788	done < tmp_mrun
2789
2790	if [[ "$local_depository_path" = "" ]]
2791	then
2792	if [[ "$global_depository_path" != "" ]]
2793	then
2794	local_depository_path=$global_depository_path
2795	else
2796	printf "\n\n +++ no depository path found in configuration file"
2797	printf "\n for local host \"$localhost\" "
2798	printf "\n please set \"\%depository_path\" in configuration file\n"
2799	locat=config_file; exit
2800	fi
2801	fi
2802	eval local_depository_path=$local_depository_path
2803	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2804	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2805
2806
2807	basename=`print $mainprog \| cut -f1 -d"."`
2808	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2809	if [[ ! -f $make_depository ]]
2810	then
2811	printf "\n"
2812	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2813	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2814	else
2815	cp $make_depository $TEMPDIR_COMPILE
2816	cd $TEMPDIR_COMPILE
2817	tar -xf $make_depository > /dev/null 2>&1
2818	cd - > /dev/null
2819	fi
2820
2821	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2822
2823	else
2824
2825	cp $executable ${TEMPDIR}/a.out
2826
2827	fi
2828
2829
2830	# WECHSEL IN TEMPORAEREN KATALOG
2831	cd $TEMPDIR
2832	printf "\n *** changed to temporary directory: $TEMPDIR"
2833
2834
2835	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2836	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2837	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2838	# ERMITTELN
2839	(( i = 0 ))
2840	while (( i < iout ))
2841	do
2842	(( i = i + 1 ))
2843	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2844	then
2845	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2846	else
2847	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2848	fi
2849	done
2850
2851
2852	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2853	if [[ $do_compile = true ]]
2854	then
2855
2856
2857	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2858	printf "\n\n\n *** compilation starts \n$striche\n"
2859	printf " *** compilation with make using following options:\n"
2860	printf " make depository: $make_depository"
2861	if [[ "$mopts" != "" ]]
2862	then
2863	printf " make options: $mopts\n"
2864	fi
2865	printf " compilername: $compiler_name\n"
2866	printf " compiler options: $fopts\n"
2867	printf " preprocessor directives: $cpp_options \n"
2868	printf " linker options: $lopts \n"
2869	if [[ "$modules" != "" ]]
2870	then
2871	printf " modules to be load: $modules \n"
2872	fi
2873	printf " source code files: $source_list \n"
2874
2875	if [[ $localhost = nech ]]
2876	then
2877	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2878	cp $TEMPDIR_COMPILE/a.out .
2879	[[ $? != 0 ]] && compile_error=true
2880	rm -rf $TEMPDIR_COMPILE
2881	elif [[ $localhost = ibmh ]]
2882	then
2883	printf " compiler is called via ssh on \"plogin1\" \n"
2884	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2885	[[ ! -f a.out ]] && compile_error=true
2886	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2887	elif [[ $localhost = lcsgib ]]
2888	then
2889	printf " compiler is called via ssh on \"bicegate0\" \n"
2890	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2891	[[ ! -f a.out ]] && compile_error=true
2892	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2893	elif [[ $localhost = lcsgih ]]
2894	then
2895	printf " compiler is called via ssh on \"hicegate0\" \n"
2896	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2897	[[ ! -f a.out ]] && compile_error=true
2898	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2899	elif [[ $localhost = lcflow ]]
2900	then
2901	printf " compiler is called via ssh on \"flow\" \n"
2902	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2903	[[ ! -f a.out ]] && compile_error=true
2904	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2905	else
2906	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2907	[[ "$module_calls" != "" ]] && eval $module_calls
2908	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2909
2910	fi
2911
2912	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2913	then
2914	printf "\n +++ error occured while compiling or linking"
2915	locat=compile
2916
2917	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2918	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2919	# then
2920	exit
2921	# else
2922	# locat=normal
2923	# fi
2924	else
2925	printf "$striche\n *** compilation finished \n"
2926	fi
2927	fi
2928
2929
2930	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2931	if [[ $local_compile = true ]]
2932	then
2933	cd $HOME
2934	rm -rf $TEMPDIR
2935	locat=local_compile; exit
2936	fi
2937
2938
2939	# BEREITSTELLEN DER INPUT-DATEIEN
2940	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2941	(( i = 0 ))
2942	while (( i < iin ))
2943	do
2944	(( i = i + 1 ))
2945	if (( i == 1 ))
2946	then
2947	printf "\n\n *** providing INPUT-files:\n$striche"
2948	fi
2949
2950
2951	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2952	if [[ "${transin[$i]}" = unavailable ]]
2953	then
2954	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2955	then
2956	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2957	printf "\n is not available!"
2958	else
2959	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2960	printf "\n is not available!"
2961	fi
2962	continue
2963	fi
2964
2965	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2966	files_for_pes=false; datentyp=file
2967	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2968	then
2969	files_for_pes=true; datentyp=directory
2970	actionin[$i]=""
2971	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2972	then
2973	actionin[$i]=""
2974	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2975	then
2976	files_for_pes=true; datentyp=directory
2977	actionin[$i]="ar"
2978	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2979	then
2980	actionin[$i]="ar"
2981	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2982	then
2983	files_for_pes=true; datentyp=directory
2984	actionin[$i]="fl"
2985	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2986	then
2987	actionin[$i]="fl"
2988	fi
2989
2990	if [[ $files_for_pes = true ]]
2991	then
2992	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2993	else
2994	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2995	fi
2996
2997	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2998	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2999	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3000	# SERVER ZU HOLEN
3001	if [[ "${actionin[$i]}" = fl ]]
3002	then
3003	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3004	if [[ $files_for_pes = false ]]
3005	then
3006	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3007	then
3008	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3009	got_tmp[$i]=true
3010	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3011	then
3012	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3013	printf "\n *** trying to use backup copy in \"$WORK\" "
3014	cp $WORK/${frelin[$i]} ${localin[$i]}
3015	else
3016	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3017	printf "\n or \"$tmp_data_catalog\" does not exist!"
3018	printf "\n *** trying to get copy from archive"
3019	actionin[$i]=ar
3020	fi
3021	else
3022	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3023	then
3024	mkdir ${localin[$i]}
3025	cd $tmp_data_catalog/${frelin[$i]}
3026	for file in $(ls *)
3027	do
3028	ln $file $TEMPDIR/${localin[$i]}
3029	done
3030	cd $TEMPDIR
3031	got_tmp[$i]=true
3032	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3033	then
3034	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3035	printf "\n *** trying to use backup copy in \"$WORK\" "
3036	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3037	else
3038	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3039	printf "\n or \"$tmp_data_catalog\" does not exist!"
3040	printf "\n *** trying to get copy from archive"
3041	actionin[$i]=ar
3042	fi
3043	fi
3044	fi
3045
3046
3047	# DATEI LIEGT AUF ARCHIV-SERVER
3048	if [[ "${actionin[$i]}" = ar ]]
3049	then
3050
3051	if [[ $files_for_pes = false ]]
3052	then
3053	printf "\n file will be restored from archive-system ($archive_system)!"
3054	else
3055	printf "\n directory will be restored from archive-system ($archive_system)!"
3056	fi
3057
3058	file_restored=false
3059
3060	if [[ $archive_system = asterix ]]
3061	then
3062	do_stagein=true
3063	(( stagein_anz = 0 ))
3064	while [[ $do_stagein = true ]]
3065	do
3066	if [[ $files_for_pes = false ]]
3067	then
3068	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3069	else
3070	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3071	fi
3072	cat STAGEIN_OUTPUT
3073	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3074	then
3075	file_restored=true
3076	do_stagein=false
3077	else
3078	(( stagein_anz = stagein_anz + 1 ))
3079	if (( stagein_anz == 10 ))
3080	then
3081	printf "\n +++ stagein stoped after 10 tries"
3082	locat=stage
3083	exit
3084	fi
3085	printf "\n +++ restoring from archive failed, trying again:"
3086	sleep 900
3087	fi
3088	done
3089	elif [[ $archive_system = DMF ]]
3090	then
3091	if [[ $files_for_pes = false ]]
3092	then
3093	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3094	locat=DMF
3095	exit
3096	else
3097	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3098	cp -r $ARCHIVE/${frelin[$i]} $PWD
3099	file_restored=true
3100	fi
3101	elif [[ $archive_system = tivoli ]]
3102	then
3103	if [[ $files_for_pes = false ]]
3104	then
3105	if [[ $localhost = lcsgih ]]
3106	then
3107	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3108	else
3109	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3110	fi
3111	else
3112	(( inode = 0 ))
3113	while (( inode < nodes ))
3114	do
3115	if [[ $localhost = lcsgih ]]
3116	then
3117	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3118	else
3119	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3120	fi
3121	(( inode = inode + 1 ))
3122	done
3123	fi
3124	file_restored=true
3125	elif [[ $archive_system = ut ]]
3126	then
3127	if [[ $files_for_pes = false ]]
3128	then
3129	cp $UT/${frelin[$i]} .
3130	else
3131	(( inode = 0 ))
3132	while (( inode < nodes ))
3133	do
3134	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3135	(( inode = inode + 1 ))
3136	done
3137	fi
3138	file_restored=true
3139	else
3140	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3141	locat=rearchive
3142	exit
3143	fi
3144
3145	if [[ $file_restored = true ]]
3146	then
3147
3148	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3149	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3150	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3151	if [[ $files_for_pes = false ]]
3152	then
3153	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3154	else
3155	mkdir $tmp_data_catalog/${frelin[$i]}
3156	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3157	fi
3158	got_tmp[$i]=true
3159
3160	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3161	mv ${frelin[$i]} ${localin[$i]}
3162
3163	fi
3164	fi
3165
3166
3167	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3168	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3169	then
3170
3171	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3172	then
3173
3174	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3175	printf "\n file will be provided for $numprocs processors"
3176	mkdir ${localin[$i]}
3177	ival=$numprocs
3178	(( ii = 0 ))
3179	while (( ii <= ival-1 ))
3180	do
3181	if (( ii < 10 ))
3182	then
3183	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3184	elif (( ii < 100 ))
3185	then
3186	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3187	elif (( ii < 1000 ))
3188	then
3189	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3190	else
3191	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3192	fi
3193	(( ii = ii + 1 ))
3194	done
3195
3196	else
3197
3198	if [[ $files_for_pes = true ]]
3199	then
3200
3201	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3202	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3203	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3204	# PER MOVE UMBENANNT WERDEN
3205	printf "\n providing $numprocs files for the respective processors"
3206	mkdir ${localin[$i]}
3207	if [[ $link_local_input = true ]]
3208	then
3209	printf " using ln -f\n"
3210	cd ${absnamein[$i]}
3211	for file in $(ls *)
3212	do
3213	ln -f $file ${localin[$i]}
3214	done
3215	cd $TEMPDIR
3216	fi
3217	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3218	if [[ ! -f "${localin[$i]}/_0000" ]]
3219	then
3220	if [[ $link_local_input = true ]]
3221	then
3222	printf " ln failed for .../_0000, using cp...\n"
3223	fi
3224	cp -r ${absnamein[$i]}/* ${localin[$i]}
3225	fi
3226
3227	else
3228	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3229	if [[ $link_local_input = true ]]
3230	then
3231	printf " using ln -f\n"
3232	ln -f ${absnamein[$i]} ${localin[$i]}
3233	fi
3234	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3235	if [[ ! -f "${localin[$i]}" ]]
3236	then
3237	if [[ $link_local_input = true ]]
3238	then
3239	printf " ln failed, using cp...\n"
3240	fi
3241	cp ${absnamein[$i]} ${localin[$i]}
3242	fi
3243	fi
3244	fi
3245	fi
3246
3247	done
3248	if (( i != 0 ))
3249	then
3250	printf "\n$striche\n *** all INPUT-files provided \n"
3251	fi
3252
3253
3254	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3255	(( i = 0 ))
3256	while (( i < iic ))
3257	do
3258	(( i = i + 1 ))
3259	if (( i == 1 ))
3260	then
3261	printf "\n\n *** execution of INPUT-commands:\n$striche"
3262	fi
3263	printf "\n >>> ${in_command[$i]}"
3264	eval ${in_command[$i]}
3265	if (( i == iic ))
3266	then
3267	printf "\n$striche\n"
3268	fi
3269	done
3270
3271
3272	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3273	cpurest=${cpumax}.
3274
3275
3276	# START DVR STREAMING SERVER
3277	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3278	then
3279	if [[ "$dvr_server" != "" ]]
3280	then
3281
3282	printf "\n\n *** preparing the dvr streaming server configuration file"
3283
3284	# Check, if a dvr server is already running
3285	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3286	if [[ "$running_dvrserver_id" != "" ]]
3287	then
3288
3289	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3290	printf "\n This server is used instead starting a new one!"
3291	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3292
3293	else
3294
3295	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3296	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3297	then
3298	cp ${PALM_BIN}/.dvrserver.config .
3299
3300	# Entering the BASEDIR, UID and GID into this file
3301	user_id=`id -u`
3302	group_id=`id -g`
3303	# & is needed as seperator, because TEMPDIR contains /
3304	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3305	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3306	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3307	mv .dvrserver.3 .dvrserver.config
3308	rm .dvrserver.1 .dvrserver.2
3309
3310	# Start dvr server in background, get his id and print on terminal
3311	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3312	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3313	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3314	local_dvrserver_running=.TRUE.
3315	else
3316	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3317	printf "\n \"$PALM_BIN\" "
3318	locat=dvr
3319	exit
3320	fi
3321
3322	fi
3323
3324	else
3325	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3326	fi
3327	fi
3328
3329
3330	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3331	# LESEN VON PALM)
3332	cat > ENVPAR << %%END%%
3333	&envpar run_identifier = '$fname', host = '$localhost',
3334	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3335	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3336	maximum_cpu_time_allowed = ${cpumax}.,
3337	revision = '$global_revision',
3338	local_dvrserver_running = $local_dvrserver_running /
3339
3340	%%END%%
3341
3342
3343	# PROGRAMMSTART
3344	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3345	PATH=$PATH:$TEMPDIR
3346
3347	# MPI debug option (argument checking, slows down execution due to increased latency)
3348	if [[ "$mpi_debug" = true ]]
3349	then
3350	export MPI_CHECK_ARGS=1
3351	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3352	fi
3353
3354	if [[ "$totalview" = true ]]
3355	then
3356	printf "\n *** totalview debugger will be used"
3357	tv_opt="-tv"
3358	else
3359	tv_opt=""
3360	fi
3361
3362	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3363	then
3364	if [[ "$ENVIRONMENT" = BATCH ]]
3365	then
3366	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3367	then
3368	printf "\n +++ debug is allowed in interactive mode only"
3369	locat=debug
3370	exit
3371	fi
3372	fi
3373	if [[ $localhost = decalpha ]]
3374	then
3375	dxladebug a.out
3376	elif [[ $localhost = ibmh ]]
3377	then
3378
3379	# SETUP THE IBM MPI ENVIRONMENT
3380	export MP_SHARED_MEMORY=yes
3381	export AIXTHREADS_SCOPE=S
3382	export OMP_NUM_THREADS=$threads_per_task
3383	export AUTHSTATE=files
3384	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3385
3386	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3387	export MP_ADAPTER_USE=shared
3388	export MP_CPU_USE=multiple
3389	export MP_TIMEOUT=1200
3390
3391	unset MP_TASK_AFFINITY
3392
3393	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3394	#(( ii = 1 ))
3395	#while (( ii <= $numprocs ))
3396	#do
3397	# echo $localhost_realname >> hostfile
3398	# (( ii = ii + 1 ))
3399	#done
3400	#export MP_HOSTFILE=hostfile
3401
3402	if [[ "$LOADLBATCH" = yes ]]
3403	then
3404	totalview poe a.out $ROPTS
3405	else
3406	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3407	export TVDSVRLAUNCHCMD=ssh
3408	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3409	fi
3410	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3411	then
3412	# CURRENTLY NO DEBUGGER ON LCSGI
3413	if [[ $run_coupled_model = true ]]
3414	then
3415	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3416	locat=debug
3417	exit
3418	else
3419	echo "no_coupling" > runfile_atmos
3420	fi
3421	(( ii = $numprocs / $threads_per_task ))
3422	export OMP_NUM_THREADS=$threads_per_task
3423	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3424	if [[ $threads_per_task != 1 ]]
3425	then
3426	printf "\n threads per task: $threads_per_task"
3427	fi
3428	printf "\n\n"
3429	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3430	then
3431	# export MPI_LAUNCH_TIMEOUT=360
3432	if [[ "$totalview" = true ]]
3433	then
3434	printf "\n running totalview debugger"
3435	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3436	else
3437	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3438	fi
3439	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3440	then
3441	# ulimit -s 300000 # A too large stack size causes problems
3442	# export MV2_NUM_PORTS=2
3443	# export MV2_CPU_MAPPING=0:1:2:3
3444	if [[ "$totalview" = true ]]
3445	then
3446	printf "\n running totalview debugger"
3447	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3448	else
3449	mpiexec ./a.out $ROPTS < runfile_atmos
3450	fi
3451	fi
3452	else
3453	printf "\n +++ no debug available on \"$localhost\" "
3454	printf "\n or not implemented in mrun so far"
3455	locat=debug
3456	exit
3457	fi
3458
3459	# end debug mode
3460	else
3461
3462	# normal execution
3463	if [[ -n $numprocs ]]
3464	then
3465	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3466	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3467	then
3468	# SETUP THE IBM MPI ENVIRONMENT
3469	if [[ $host != ibmh && $host != ibmkisti ]]
3470	then
3471	export MP_SHARED_MEMORY=yes
3472	export AIXTHREAD_SCOPE=S
3473	export OMP_NUM_THREADS=$threads_per_task
3474	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3475	export AUTHSTATE=files
3476	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3477	# export MP_PRINTENV=yes
3478
3479	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3480	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3481	export MP_WAIT_MODE=poll
3482	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3483	fi
3484
3485	if [[ $host = ibmkisti ]]
3486	then
3487	export LANG=en_US
3488	export MP_SHARED_MEMORY=yes
3489	if [[ $threads_per_task = 1 ]]
3490	then
3491	export MP_SINGLE_THREAD=yes
3492	export MEMORY_AFFINITY=MCM
3493	else
3494	export OMP_NUM_THREADS=$threads_per_task
3495	fi
3496	fi
3497
3498	if [[ "$LOADLBATCH" = yes ]]
3499	then
3500	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3501	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3502	then
3503	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3504	else
3505	if [[ $run_coupled_model = false ]]
3506	then
3507	if [[ "$ocean_file_appendix" = true ]]
3508	then
3509	echo "precursor_ocean" > runfile_atmos
3510	else
3511	echo "precursor_atmos" > runfile_atmos
3512	fi
3513	else
3514	(( iia = $numprocs_atmos / $threads_per_task ))
3515	(( iio = $numprocs_ocean / $threads_per_task ))
3516	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3517	printf "\n using $coupled_mode coupling"
3518	printf "\n\n"
3519	echo "coupled_run $iia $iio" > runfile_atmos
3520	fi
3521	poe ./a.out $ROPTS < runfile_atmos
3522	fi
3523	else
3524	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3525	then
3526	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3527	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3528	then
3529	if [[ -f $hostfile ]]
3530	then
3531	cp $hostfile hostfile
3532	else
3533	(( ii = 1 ))
3534	while (( ii <= $numprocs ))
3535	do
3536	echo $localhost_realname >> hostfile
3537	(( ii = ii + 1 ))
3538	done
3539	fi
3540	export MP_HOSTFILE=hostfile
3541	if [[ $run_coupled_model = false ]]
3542	then
3543	if [[ "$ocean_file_appendix" = true ]]
3544	then
3545	echo "precursor_ocean" > runfile_atmos
3546	else
3547	echo "precursor_atmos" > runfile_atmos
3548	fi
3549	else
3550	(( iia = $numprocs_atmos / $threads_per_task ))
3551	(( iio = $numprocs_ocean / $threads_per_task ))
3552	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3553	printf "\n using $coupled_mode coupling"
3554	printf "\n\n"
3555	echo "coupled_run $iia $iio" > runfile_atmos
3556	fi
3557	if [[ $localhost = ibmy ]]
3558	then
3559	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3560	else
3561	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3562	fi
3563
3564	else
3565	if [[ "$host_file" = "" ]]
3566	then
3567	printf "\n +++ no hostfile given in configuration file"
3568	locat=config_file
3569	exit
3570	else
3571	eval host_file=$host_file
3572	fi
3573	export MP_HOSTFILE=$host_file
3574	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3575	fi
3576	fi
3577	elif [[ $host = nech \|\| $host = necriam ]]
3578	then
3579	(( ii = nodes ))
3580	if [[ $ii = 1 ]]
3581	then
3582	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3583	export MPIPROGINF=YES
3584	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3585	echo "*** execution on single node with mpirun"
3586	mpirun -np $numprocs ./a.out $ROPTS
3587	else
3588	(( i = 0 ))
3589	while (( i < ii ))
3590	do
3591	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3592	(( i = i + 1 ))
3593	done
3594
3595	echo "#!/bin/sh" > mpi_exec_shell
3596	echo " " >> mpi_exec_shell
3597	echo "set -u" >> mpi_exec_shell
3598	echo "F_ERRCNT=0" >> mpi_exec_shell
3599	echo "MPIPROGINV=YES" >> mpi_exec_shell
3600	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3601	echo "cpurest=$cpurest" >> mpi_exec_shell
3602	echo "fname=$fname" >> mpi_exec_shell
3603	echo "localhost=$localhost" >> mpi_exec_shell
3604	echo "return_addres=$return_addres" >> mpi_exec_shell
3605	echo "return_username=$return_username" >> mpi_exec_shell
3606	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3607	echo "write_binary=$write_binary" >> mpi_exec_shell
3608	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3609	echo " " >> mpi_exec_shell
3610	echo "export F_ERRCNT" >> mpi_exec_shell
3611	echo "export MPIPROGINV" >> mpi_exec_shell
3612	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3613	echo "export cpurest" >> mpi_exec_shell
3614	echo "export fname" >> mpi_exec_shell
3615	echo "export localhost" >> mpi_exec_shell
3616	echo "export return_addres" >> mpi_exec_shell
3617	echo "export return_username" >> mpi_exec_shell
3618	echo "export tasks_per_node" >> mpi_exec_shell
3619	echo "export write_binary" >> mpi_exec_shell
3620	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3621	echo " " >> mpi_exec_shell
3622	echo "exec ./a.out" >> mpi_exec_shell
3623
3624	chmod u+x mpi_exec_shell
3625	export MPIPROGINF=YES
3626	mpirun -f multinode_config &
3627	wait
3628
3629	fi
3630	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3631	then
3632
3633	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3634	# DOES NOT EXIST
3635	if [[ $host != lcsgih && $host != lcsgib ]]
3636	then
3637	if [[ -f $hostfile ]]
3638	then
3639	cp $hostfile hostfile
3640	(( ii = $numprocs / $threads_per_task ))
3641	else
3642	(( ii = 1 ))
3643	while (( ii <= $numprocs / $threads_per_task ))
3644	do
3645	echo $localhost_realname >> hostfile
3646	(( ii = ii + 1 ))
3647	done
3648	fi
3649	eval zeile=\"`head -n $ii hostfile`\"
3650	printf "\n *** running on: $zeile"
3651	fi
3652
3653	(( ii = $numprocs / $threads_per_task ))
3654	export OMP_NUM_THREADS=$threads_per_task
3655	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3656	if [[ $threads_per_task != 1 ]]
3657	then
3658	# increase stack size to unlimited, because large runs
3659	# may abort otherwise
3660	ulimit -Ss unlimited
3661	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3662	fi
3663	if [[ $run_coupled_model = false ]]
3664	then
3665	if [[ "$ocean_file_appendix" = true ]]
3666	then
3667	echo "precursor_ocean" > runfile_atmos
3668	else
3669	echo "precursor_atmos" > runfile_atmos
3670	fi
3671	printf "\n\n"
3672	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3673	then
3674	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3675	then
3676	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3677	# export MPI_DSM_DISTRIBUTE=1
3678	# MPI_DSM_CPULIST: pin MPI processes to cores
3679	if [[ $use_openmp = false ]]
3680	then
3681	if [[ "$sgi_feature" = ice2 ]]
3682	then
3683	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3684	else
3685	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3686	fi
3687	else
3688	unset MPI_DSM_CPULIST
3689	fi
3690	# MPI_IB_RAILS: use both IB rails on ICE2
3691	export MPI_BUFS_PER_HOST=512
3692	export MPI_IB_RAILS=2
3693	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3694	export MPI_CONNECTIONS_THRESHOLD=8192
3695	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3696	export MPI_TYPE_DEPTH=20
3697	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3698	export MPI_GROUP_MAX=64
3699	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3700	if [[ $use_openmp = true ]]
3701	then
3702	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3703	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3704	else
3705	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3706	fi
3707
3708	# next is test for openmp usage
3709	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3710	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3711	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3712	then
3713	export MV2_NUM_PORTS=2
3714	# The default setting of MV2_CPU_MAPPING gives best results
3715	# export MV2_ENABLE_AFFINITY=1
3716	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3717	# if [[ "$sgi_feature" = ice2 ]]
3718	# then
3719	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3720	# else
3721	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3722	# fi
3723	if [[ $use_openmp = true ]]
3724	then
3725	unset MV2_CPU_MAPPING
3726	export MV2_ENABLE_AFFINITY=0
3727	fi
3728	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3729	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3730	if [[ $use_openmp = true ]]
3731	then
3732	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3733	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3734	else
3735	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3736	fi
3737	elif [[ "$mpilib" = impi ]]
3738	then
3739	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3740	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3741	fi
3742	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3743	then
3744	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3745	elif [[ $host = lcflow ]]
3746	then
3747	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3748	else
3749	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3750	fi
3751	else
3752
3753	# currently there is no full MPI-2 support on ICE and XT4
3754	(( iia = $numprocs_atmos / $threads_per_task ))
3755	(( iio = $numprocs_ocean / $threads_per_task ))
3756	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3757	printf "\n using $coupled_mode coupling"
3758	printf "\n\n"
3759
3760	if [[ $coupled_mode = "mpi2" ]]
3761	then
3762	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3763	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3764	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3765	then
3766
3767	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3768	then
3769	# export MPI_LAUNCH_TIMEOUT=360
3770	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3771	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3772	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3773	then
3774	# ulimit -s 300000 # A too large stack size causes problems
3775	# export MV2_NUM_PORTS=2
3776	# export MV2_CPU_MAPPING=0:1:2:3
3777	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3778	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3779	fi
3780
3781	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3782	then
3783
3784	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3785	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3786
3787	else
3788	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3789	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3790	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3791	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3792	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3793	fi
3794	wait
3795
3796	else
3797
3798	echo "coupled_run $iia $iio" > runfile_atmos
3799	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3800	then
3801
3802	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3803	then
3804	# export MPI_LAUNCH_TIMEOUT=360
3805	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3806	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3807	then
3808	# ulimit -s 300000 # A too large stack size causes problems
3809	# export MV2_NUM_PORTS=2
3810	# export MV2_CPU_MAPPING=0:1:2:3
3811	mpiexec ./a.out $ROPTS < runfile_atmos
3812	fi
3813
3814	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3815	then
3816
3817	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3818
3819	elif [[ $host = lck \|\| $host = lckordi ]]
3820	then
3821	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3822	fi
3823	wait
3824	fi
3825
3826	fi
3827	elif [[ $host = decalpha ]]
3828	then
3829	dmpirun -np $numprocs a.out $ROPTS
3830	elif [[ $host = lckyoto ]]
3831	then
3832	set -xv
3833	export P4_RSHCOMMAND=plesh
3834	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3835	if [[ "$ENVIRONMENT" = BATCH ]]
3836	then
3837	if [[ "$cond2" = fujitsu ]]
3838	then
3839	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3840	elif [[ "cond2" = pgi ]]
3841	then
3842	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3843	else
3844	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3845	fi
3846	else
3847	if [[ "$cond2" = "" ]]
3848	then
3849	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3850	else
3851	mpirun -np $numprocs ./a.out $ROPTS
3852	fi
3853	fi
3854	set +xv
3855	elif [[ $host = lctit ]]
3856	then
3857	export OMP_NUM_THREADS=$threads_per_task
3858	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3859	if [[ "$threads_per_task" != 1 ]]
3860	then
3861	export MV2_ENABLE_AFFINITY=0
3862	fi
3863	echo "----- PBS_NODEFILE content:"
3864	cat $PBS_NODEFILE
3865	echo "-----"
3866	(( ii = $numprocs / $threads_per_task ))
3867	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3868	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3869	else
3870	mpprun -n $numprocs a.out $ROPTS
3871	fi
3872	[[ $? != 0 ]] && execution_error=true
3873
3874
3875	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3876	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3877	then
3878	apprentice
3879	fi
3880	else
3881	a.out $ROPTS
3882	fi
3883	fi
3884	if [[ $? != 0 \|\| $execution_error = true ]]
3885	then
3886
3887	# ABBRUCH BEI LAUFZEITFEHLER
3888	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3889	printf "\n +++ runtime error occured"
3890	locat=execution
3891	exit
3892	else
3893	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3894	printf "\n$striche\n *** execution finished \n"
3895
3896	# Stop the dvr streaming server and process the dvr output in order
3897	# to create dvrs- and html-files containing all streams
3898	if [[ "$dvrserver_id" != "" ]]
3899	then
3900	kill $dvrserver_id
3901	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3902
3903	# If there is a directory, data have been output by the
3904	# streaming server. Otherwise, user has chosen dvrp_output=local
3905	if [[ -d DATA_DVR ]]
3906	then
3907
3908	# Add the current dvr configuration file to the dvr output
3909	# directory
3910	cp .dvrserver.config DATA_DVR
3911
3912	# Process the dvr output (option -s for also generating
3913	# sequence mode data)
3914	process_dvr_output -d DATA_DVR -f $fname -s
3915
3916	else
3917
3918	# Process the local output
3919	process_dvr_output -l -d DATA_DVR -f $fname
3920
3921	fi
3922
3923	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3924	then
3925
3926	# Process dvr output generated in local mode (dvrp_output=local)
3927	process_dvr_output -l -d DATA_DVR -f $fname
3928
3929	fi
3930	fi
3931
3932
3933
3934	# Call of combine_plot_fields in order to merge single files written
3935	# by each PE into one file.
3936	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3937	then
3938	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3939	printf "\n 2d- and/or 3d-data may be incomplete!"
3940	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3941	else
3942	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3943	combine_plot_fields${block}.x
3944	fi
3945
3946
3947
3948	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3949	(( i = 0 ))
3950	while (( i < ioc ))
3951	do
3952	(( i = i + 1 ))
3953	if (( i == 1 ))
3954	then
3955	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3956	fi
3957	printf "\n >>> ${out_command[$i]}"
3958	eval ${out_command[$i]}
3959	if (( i == ioc ))
3960	then
3961	printf "\n$striche\n"
3962	fi
3963	done
3964
3965
3966	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3967	if [[ $do_trace = true ]]
3968	then
3969	printf "\n\n"
3970	ls -al
3971	fi
3972
3973
3974
3975	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3976	(( i = 0 ))
3977	while (( i < iout ))
3978	do
3979	(( i = i + 1 ))
3980	if (( i == 1 ))
3981	then
3982	printf "\n\n *** saving OUTPUT-files:\n$striche"
3983	fi
3984
3985	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3986	files_for_pes=false; filetyp=file
3987	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3988	then
3989	files_for_pes=true; filetyp=directory
3990	actionout[$i]=""
3991	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3992	then
3993	actionout[$i]=""
3994	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3995	then
3996	files_for_pes=true; filetyp=directory
3997	actionout[$i]="ar"
3998	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3999	then
4000	actionout[$i]="ar"
4001	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4002	then
4003	files_for_pes=true; filetyp=directory
4004	actionout[$i]="fl"
4005	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4006	then
4007	actionout[$i]="fl"
4008	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4009	then
4010	files_for_pes=true; filetyp=directory
4011	actionout[$i]="tr"
4012	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4013	then
4014	actionout[$i]="tr"
4015	fi
4016
4017	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4018	then
4019	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4020	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4021	then
4022	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4023	else
4024
4025
4026	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4027	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4028	# REMOTE-RECHNUNGEN
4029	if [[ "${actionout[$i]}" = tr ]]
4030	then
4031	if [[ $localhost != $fromhost ]]
4032	then
4033	if [[ $files_for_pes = false ]]
4034	then
4035	cps=""
4036	cst=""
4037	else
4038	cps=-c
4039	cst="/"
4040	fi
4041	if [[ $localhost = nech ]]
4042	then
4043
4044	# TRANSFER IN EIGENSTAENDIGEM JOB
4045	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4046	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4047	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4048	if [[ $files_for_pes = false ]]
4049	then
4050	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4051	else
4052	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4053	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4054	fi
4055
4056	echo "set -x" > transfer_${localout[$i]}
4057	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4058
4059	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4060	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4061	printf "\n or higher cycle\n"
4062	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4063
4064	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4065
4066	if [[ $localhost = nech ]]
4067	then
4068	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4069	else
4070	if [[ "$LOGNAME" = b323013 ]]
4071	then
4072	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4073	else
4074	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4075	fi
4076	fi
4077
4078	else
4079
4080	# TRANSFER INNERHALB DIESES JOBS
4081	transfer_failed=false
4082	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4083	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4084	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4085	[[ $? != 0 ]] && transfer_failed=true
4086
4087	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4088	# LOKALER MASCHINE ANLEGEN
4089	if [[ $transfer_failed = true ]]
4090	then
4091	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4092	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4093
4094	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4095	# ANLEGEN.
4096	eval local_catalog=${pathout[$i]}
4097	if [[ ! -d $local_catalog ]]
4098	then
4099	printf " *** local directory does not exist. Trying to create:\n"
4100	printf " $local_catalog \n"
4101	mkdir -p $local_catalog
4102	fi
4103	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4104	transfer_problems=true
4105	fi
4106	fi
4107	else
4108
4109	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4110	actionout[$i]=""
4111	fi
4112	fi
4113
4114
4115	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4116	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4117	# REMOTE-RECHNUNGEN
4118	if [[ "${actionout[$i]}" = tra ]]
4119	then
4120	if [[ $localhost != $fromhost ]]
4121	then
4122	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4123	then
4124
4125	# TRANSFER IN EIGENSTAENDIGEM JOB
4126	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4127	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4128	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4129	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4130
4131	echo "set -x" > transfer_${localout[$i]}
4132	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4133
4134	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4135	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4136	printf "\n or higher cycle\n"
4137	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4138
4139	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4140
4141	if [[ $localhost = nech ]]
4142	then
4143	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4144	else
4145	if [[ $LOGNAME = b323013 ]]
4146	then
4147	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4148	else
4149	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4150	fi
4151	fi
4152
4153	else
4154
4155	# TRANSFER INNERHALB DIESES JOBS
4156	transfer_failed=false
4157	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4158	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4159	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4160	[[ $? != 0 ]] && transfer_failed=true
4161
4162	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4163	# LOKALER MASCHINE ANLEGEN
4164	if [[ $transfer_failed = true ]]
4165	then
4166	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4167	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4168
4169	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4170	# ANLEGEN
4171	eval local_catalog=${pathout[$i]}
4172	if [[ ! -d $local_catalog ]]
4173	then
4174	printf " *** local directory does not exist. Trying to create:\n"
4175	printf " $local_catalog \n"
4176	mkdir -p $local_catalog
4177	fi
4178
4179	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4180	transfer_problems=true
4181	fi
4182	fi
4183	else
4184
4185	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4186	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4187	actionout[$i]=a
4188	fi
4189	fi
4190
4191
4192	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4193	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4194	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4195	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4196	if [[ "${actionout[$i]}" = fl ]]
4197	then
4198	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4199	chmod g+rx $tmp_data_catalog
4200	if [[ $files_for_pes = false ]]
4201	then
4202	printf "\n >>> OUTPUT: ${localout[$i]} to"
4203	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4204	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4205	else
4206	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4207	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4208	mkdir $tmp_data_catalog/${frelout[$i]}
4209	cd ${localout[$i]}
4210	for file in $(ls *)
4211	do
4212	ln -f $file $tmp_data_catalog/${frelout[$i]}
4213	done
4214	cd $TEMPDIR
4215	fi
4216
4217
4218	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4219	if [[ $store_on_archive_system = true ]]
4220	then
4221
4222	if [[ $archive_system = asterix ]]
4223	then
4224	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4225	if [[ $files_for_pes = false ]]
4226	then
4227	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4228	else
4229	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4230	fi
4231	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4232	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4233	echo "then" >> archive_${frelout[$i]}
4234	echo " do_stageout=false" >> archive_${frelout[$i]}
4235	echo "else" >> archive_${frelout[$i]}
4236	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4237	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4238	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4239	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4240	if [[ $files_for_pes = false ]]
4241	then
4242	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4243	else
4244	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4245	fi
4246	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4247	echo "fi" >> archive_${frelout[$i]}
4248	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4249	elif [[ $archive_system = DMF ]]
4250	then
4251	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4252	if [[ $files_for_pes = false ]]
4253	then
4254	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4255	locat=DMF
4256	exit
4257	else
4258	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4259	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4260	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4261	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4262	fi
4263	elif [[ $archive_system = tivoli ]]
4264	then
4265	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4266	if [[ $files_for_pes = false ]]
4267	then
4268	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4269	echo "set -x" >> archive_${frelout[$i]}
4270	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4271	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4272	else
4273
4274	echo "set -x" >> archive_${frelout[$i]}
4275	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4276	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4277	cd $tmp_data_catalog
4278	all_files=`ls -1 ${frelout[$i]}/*`
4279	cd - > /dev/null
4280	(( inode = 0 ))
4281	(( tp1 = tasks_per_node + 1 ))
4282	while (( inode < nodes ))
4283	do
4284	# echo "*** all_files = \"$all_files\" "
4285	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4286	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4287	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4288	# echo "*** files = \"$files\" "
4289	# echo "*** all_files = \"$all_files\" "
4290	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4291	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4292	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4293	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4294	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4295	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4296	(( inode = inode + 1 ))
4297	done
4298	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4299	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4300	fi
4301	elif [[ $archive_system = ut ]]
4302	then
4303	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4304	if [[ $files_for_pes = false ]]
4305	then
4306	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4307	echo "set -x" >> archive_${frelout[$i]}
4308	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4309	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4310	else
4311
4312	echo "set -x" >> archive_${frelout[$i]}
4313	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4314	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4315	cd $tmp_data_catalog
4316	all_files=`ls -1 ${frelout[$i]}/*`
4317	cd - > /dev/null
4318	(( inode = 0 ))
4319	(( tp1 = tasks_per_node + 1 ))
4320	while (( inode < nodes ))
4321	do
4322	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4323	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4324	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4325	(( inode = inode + 1 ))
4326	done
4327	fi
4328	elif [[ $archive_system = none ]]
4329	then
4330	printf " +++ archiving on $localhost not available!\n"
4331	fi
4332
4333	if [[ $archive_system != none ]]
4334	then
4335	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4336	then
4337	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4338	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4339	elif [[ $localhost = nech ]]
4340	then
4341	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4342	fi
4343	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4344	fi
4345	else
4346	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4347	fi
4348
4349
4350	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4351	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4352	if [[ $files_for_pes = false ]]
4353	then
4354	cat /dev/null > ${pathout[$i]}
4355	else
4356	mkdir -p ${pathout[$i]}
4357	fi
4358
4359	fi
4360
4361
4362	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4363	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4364	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4365	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4366	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4367	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4368	if [[ "${actionout[$i]}" = ar ]]
4369	then
4370	if [[ $files_for_pes = false ]]
4371	then
4372	printf "\n >>> OUTPUT: ${localout[$i]} to"
4373	printf "\n ${pathout[$i]}"
4374	printf "\n File will be copied to archive-system ($archive_system) !\n"
4375	else
4376	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4377	printf "\n ${pathout[$i]}"
4378	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4379	fi
4380	mv ${localout[$i]} ${frelout[$i]}
4381
4382	file_saved=false
4383
4384	if [[ $archive_system = asterix ]]
4385	then
4386	do_stageout=true
4387	(( stageout_anz = 0 ))
4388	while [[ $do_stageout = true ]]
4389	do
4390	if [[ $files_for_pes = false ]]
4391	then
4392	stageout ${frelout[$i]} > STAGE_OUTPUT
4393	else
4394	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4395	fi
4396	cat STAGE_OUTPUT
4397	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4398	then
4399	file_saved=true
4400	do_stageout=false
4401	else
4402	if [[ $files_for_pes = false ]]
4403	then
4404	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4405	else
4406	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4407	fi
4408	(( stageout_anz = stageout_anz + 1 ))
4409	if (( stageout_anz == 10 ))
4410	then
4411	printf "\n +++ stoped after 10 unsuccessful tries!"
4412	archive_save=false
4413	do_stageout=false
4414	else
4415	printf "\n *** new try to store on archive after 15 min:"
4416	sleep 900
4417	fi
4418	fi
4419	done
4420	elif [[ $archive_system = DMF ]]
4421	then
4422	if [[ $files_for_pes = false ]]
4423	then
4424	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4425	locat=DMF
4426	exit
4427	else
4428	rm -rf $ARCHIVE/${frelout[$i]}
4429	cp -r ${frelout[$i]} $ARCHIVE
4430	fi
4431	file_saved=true
4432	elif [[ $archive_system = tivoli ]]
4433	then
4434	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4435	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4436	# GELEGT WERDEN
4437	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4438	chmod g+rx $tmp_data_catalog
4439	if [[ $files_for_pes = false ]]
4440	then
4441	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4442	else
4443	mkdir $tmp_data_catalog/${frelout[$i]}
4444	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4445	fi
4446
4447	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4448	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4449	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4450	if [[ $files_for_pes = false ]]
4451	then
4452	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4453	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4454	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4455	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4456	else
4457	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4458	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4459	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4460	fi
4461
4462	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4463	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4464	file_saved=true
4465
4466	elif [[ $archive_system = ut ]]
4467	then
4468	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4469	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4470	# GELEGT WERDEN
4471	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4472	chmod g+rx $tmp_data_catalog
4473	if [[ $files_for_pes = false ]]
4474	then
4475	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4476	else
4477	mkdir $tmp_data_catalog/${frelout[$i]}
4478	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4479	fi
4480
4481	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4482	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4483	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4484	if [[ $files_for_pes = false ]]
4485	then
4486	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4487	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4488	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4489	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4490	else
4491	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4492	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4494	fi
4495
4496	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4497	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4498	file_saved=true
4499
4500	else
4501	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4502	archive_save=false
4503	fi
4504	if [[ $file_saved = true ]]
4505	then
4506	if [[ $files_for_pes = false ]]
4507	then
4508	cat /dev/null > ${pathout[$i]}
4509	else
4510	mkdir -p ${pathout[$i]}
4511	fi
4512	fi
4513	fi
4514
4515	# APPEND AUF LOKALER MASCHINE
4516	if [[ "${actionout[$i]}" = "a" ]]
4517	then
4518	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4519	then
4520	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4521	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4522	else
4523	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4524	cat ${localout[$i]} >> ${pathout[$i]}
4525	fi
4526	fi
4527
4528	# KOPIEREN AUF LOKALER MASCHINE
4529	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4530	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4531	then
4532
4533	# KOPIEREN AUF EINPROZESSORMASCHINE
4534	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4535	then
4536	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4537	if [[ $link_local_output = true ]]
4538	then
4539	printf " using ln -f\n"
4540	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4541	fi
4542	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4543	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4544	then
4545	if [[ $link_local_output = true ]]
4546	then
4547	printf " ln failed, using cp...\n"
4548	fi
4549	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4550	fi
4551	else
4552	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4553	if [[ $link_local_output = true ]]
4554	then
4555	printf " using ln -f\n"
4556	ln -f ${localout[$i]} ${pathout[$i]}
4557	fi
4558	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4559	if [[ ! -f "${pathout[$i]}" ]]
4560	then
4561	if [[ $link_local_output = true ]]
4562	then
4563	printf " ln failed, using cp...\n"
4564	fi
4565	cp ${localout[$i]} ${pathout[$i]}
4566	fi
4567	fi
4568
4569	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4570	then
4571
4572	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4573	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4574	# WIRD DANN KOPIERT
4575	# PER MOVE UMBENANNT WERDEN
4576	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4577	if [[ $link_local_output = true ]]
4578	then
4579	printf " using ln -f\n"
4580	mkdir ${pathout[$i]}
4581	cd ${localout[$i]}
4582	for file in $(ls *)
4583	do
4584	ln -f $file ${pathout[$i]}
4585	done
4586	cd $TEMPDIR
4587	fi
4588	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4589	if [[ ! -f "${pathout[$i]}/_0000" ]]
4590	then
4591	if [[ $link_local_output = true ]]
4592	then
4593	printf " ln failed for .../_0000, using cp...\n"
4594	fi
4595	cp -r ${localout[$i]} ${pathout[$i]}
4596	fi
4597
4598	fi
4599	fi
4600	done
4601	if (( i != 0 ))
4602	then
4603	if [[ $transfer_problems = true ]]
4604	then
4605	printf "\n$striche\n *** OUTPUT-files saved"
4606	printf "\n +++ WARNING: some data transfers failed! \n"
4607	else
4608	printf "\n$striche\n *** all OUTPUT-files saved \n"
4609	fi
4610	fi
4611
4612
4613	# EVENTUELL FOLGEJOB STARTEN
4614	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4615	if [[ -f CONTINUE_RUN ]]
4616	then
4617
4618	if [[ $archive_save = true ]]
4619	then
4620
4621	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4622	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4623	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4624	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4625	# HANDEN
4626	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4627	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4628	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4629	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4630	then
4631	mc=`echo $mc \| sed 's/#/f/g'`
4632	fi
4633
4634
4635	# JOB STARTEN
4636	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4637	echo " $mc"
4638	printf "\n$striche\n"
4639	if [[ $localhost != $fromhost ]]
4640	then
4641
4642	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4643	then
4644	echo "*** ssh will be used to initiate restart-runs!"
4645	echo " return_addres=\"$return_addres\" "
4646	echo " return_username=\"$return_username\" "
4647	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4648	then
4649	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4650	else
4651	if [[ $localhost = ibmkisti ]]
4652	then
4653	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4654	else
4655	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4656	fi
4657	fi
4658	else
4659	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4660	locat=restart; exit
4661	fi
4662
4663	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4664	# DER AKTUELLE JOB ENDET
4665	if [[ $queue = special1q ]]
4666	then
4667	sleep 120
4668	else
4669	sleep 30
4670	fi
4671
4672	else
4673
4674	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4675	# RUFEN WERDEN, AUSSER AUF lcfimm
4676	cd $LOCAL_PWD
4677	if [[ $localhost = lcfimm ]]
4678	then
4679	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4680	else
4681	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4682	fi
4683	cd - > /dev/null
4684	fi
4685	printf "\n$striche\n *** restart-run initiated \n"
4686
4687
4688	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4689	# GEHOLT WORDEN SIND, LOESCHEN
4690	(( i = 0 ))
4691	while (( i < iin ))
4692	do
4693	(( i = i + 1 ))
4694	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4695	then
4696	rm -r $tmp_data_catalog/${frelin[$i]}
4697	fi
4698	done
4699
4700	else
4701
4702	printf "\n +++ no restart-run possible, since errors occured"
4703	printf "\n during the archive process"
4704	fi
4705
4706	fi
4707
4708
4709
4710	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4711	if [[ "$email_notification" != "none" ]]
4712	then
4713
4714	if [[ $localhost != $fromhost ]]
4715	then
4716	if [[ -f CONTINUE_RUN ]]
4717	then
4718	echo "PALM restart run necessary" > email_text
4719	echo "description header of actual run:" >> email_text
4720	cat CONTINUE_RUN >> email_text
4721	echo "mrun-command to restart:" >> email_text
4722	echo "$mc" >> email_text
4723	else
4724	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4725	fi
4726	mail $email_notification < email_text
4727	printf "\n *** email notification sent to \"$email_notification\" "
4728	fi
4729	fi
4730
4731
4732
4733	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4734	cd $HOME
4735	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4736
4737	else
4738
4739
4740	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4741	# CHENDE AKTIONEN DURCHGEFUEHRT
4742
4743	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4744	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4745	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4746	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4747	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4748	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4749	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4750	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4751	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4752	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4753	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4754	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4755	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4756	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4757	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4758	if [[ $use_openmp = true ]]
4759	then
4760	mrun_com=${mrun_com}" -O $threads_per_task"
4761	fi
4762	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4763	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4764	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4765	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4766	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4767	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4768	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4769	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4770	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4771	if [[ $do_remote = true ]]
4772	then
4773	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4774	fi
4775
4776
4777	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4778	jobfile=jobfile.$RANDOM
4779
4780
4781	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4782	echo "mkdir $TEMPDIR" >> $jobfile
4783	echo "cd $TEMPDIR" >> $jobfile
4784
4785
4786	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4787	if [[ $do_trace = true ]]
4788	then
4789	echo "set -x" >> $jobfile
4790	else
4791	echo "set +vx" >> $jobfile
4792	fi
4793
4794
4795	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4796	# DATEI FUER DEN JOB
4797	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4798	then
4799
4800	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4801	# KOPIEREN
4802	if [[ $restart_run != true ]]
4803	then
4804	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4805	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4806	fi
4807
4808	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4809	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4810	echo "set -x" >> $jobfile
4811	if [[ $host = $localhost ]]
4812	then
4813	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4814	else
4815	if [[ $host != ibmkisti ]]
4816	then
4817	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4818	else
4819	# on KISTI's IBM firewall is only opened on interactive node
4820	echo "localdir=\`pwd\`" >> $jobfile
4821	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4822	fi
4823	fi
4824	echo "export SOURCES_COMPLETE=true" >> $jobfile
4825
4826	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4827	# ARBEITSVERZEICHNIS VERSCHIEBEN
4828	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4829	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4830	echo "execute_mrun=true" >> $jobfile
4831	echo " " >> $jobfile
4832
4833	else
4834
4835	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4836	# SOWIE GEGEBENENFALLS DES MAKEFILES
4837	if [[ $do_compile = true ]]
4838	then
4839
4840	source_catalog=SOURCES_FOR_RUN_$fname
4841
4842	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4843	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4844	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4845	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4846	echo "export SOURCES_COMPLETE=true" >> $jobfile
4847	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4848
4849	for filename in $source_list
4850	do
4851	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4852	echo "cat > $filename << \"%END%\"" >> $jobfile
4853	cat $source_catalog/$filename >> $jobfile
4854	echo " " >> $jobfile
4855	echo "%END%" >> $jobfile
4856	echo " " >> $jobfile
4857	done
4858
4859	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4860	echo "cat > Makefile << \"%END%\"" >> $jobfile
4861	cat $source_catalog/Makefile >> $jobfile
4862	echo " " >> $jobfile
4863	echo "%END%" >> $jobfile
4864	echo " " >> $jobfile
4865
4866	echo "cd - > /dev/null" >> $jobfile
4867
4868	fi
4869
4870
4871	# ABSPEICHERN DER KONFIGURATIONSDATEI
4872	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4873	echo "cat > $config_file << \"%END%\"" >> $jobfile
4874	cat $config_file >> $jobfile
4875	echo "%END%" >> $jobfile
4876	echo " " >> $jobfile
4877
4878
4879	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4880	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4881	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4882	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4883	echo "%END%" >> $jobfile
4884	echo "chmod u+x $mrun_script_name" >> $jobfile
4885	echo "execute_mrun=true" >> $jobfile
4886	echo " " >> $jobfile
4887
4888	fi
4889
4890
4891	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4892	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4893	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4894	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4895	if [[ $do_remote = true ]]
4896	then
4897	(( i = 0 ))
4898	while (( i < iin ))
4899	do
4900	(( i = i + 1 ))
4901	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4902	if [[ "${transin[$i]}" = job ]]
4903	then
4904	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4905	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4906	echo " " >> $jobfile
4907	echo "%END%" >> $jobfile
4908	else
4909	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4910	fi
4911
4912	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4913	echo "if [[ \$? = 1 ]]" >> $jobfile
4914	echo "then" >> $jobfile
4915	echo " echo \" \" " >> $jobfile
4916	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4917	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4918	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4919	echo " execute_mrun=false" >> $jobfile
4920	echo "fi" >> $jobfile
4921	done
4922	fi
4923
4924	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4925	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4926	echo "LOCAL_PWD=$working_directory" >> $jobfile
4927	echo "export LOCAL_PWD" >> $jobfile
4928
4929	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4930	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4931	echo "export LOCAL_MRUN_PATH" >> $jobfile
4932
4933	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4934	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4935	then
4936	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4937	fi
4938
4939	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4940	echo "set -x" >> $jobfile
4941	echo "queue=$queue" >> $jobfile
4942	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4943
4944	echo 'ls -al; echo `pwd`' >> $jobfile
4945	echo "cd \$HOME" >> $jobfile
4946	echo "rm -rf $TEMPDIR" >> $jobfile
4947
4948
4949
4950
4951	# JOB PER SUBJOB STARTEN
4952	if [[ $silent = false ]]
4953	then
4954	printf "\n "
4955	else
4956	printf "\n\n"
4957	fi
4958
4959	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4960	rm -rf $jobfile
4961
4962
4963	fi # ENDE REMOTE-TEIL
4964
4965
4966
4967	# ENDE DER PROZEDUR

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