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source: palm/trunk/SCRIPTS/mrun @ 818

Last change on this file since 818 was 818, checked in by maronga, 12 years ago
bugfix: namelist file check now possible for topography and re-enabled. mrungui update (-z option)
Property svn:keywords set to `Id Rev`
File size: 188.7 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 818 2012-02-08 16:11:23Z maronga $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and
218	# atmosphere is now allowed
219	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
220	# usage
221	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
222	# usage, totalview usage extended
223	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
224	# 03/04/11 - Micha - added lckordi
225	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
226	# 17/08/11 - Siggi - extensions for impi library
227	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
228	# (.nc)
229	# 18/08/11 - Marcus - support for Linux OS with German locale
230	# - properly report hosts on general Linux clusters
231	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
232	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
233	# IMUK
234	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
235	# io streams, option -T is obligatory from now on
236	# 25/01/12 - BjornM - a namelist file check prior to the model run has
237	# been implemented (check_namelist_files).
238	# New option -z can be used to skip the check
239	# 03/02/12 - BjornM - namelist file check temporary disabled
240	# until severel bugs are fixed
241	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
242	# restart runs. check is now possible with topography
243	# and the -v (silent) option is considered
244
245	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
246
247	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
248	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
249	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
250
251	AddFilenames=""
252	additional_conditions=""
253	add_source_path=""
254	afname=""
255	archive_save=true
256	archive_system=none
257	check_namelist_files=true
258	compiler_name=""
259	cond1=""
260	cond2=""
261	config_file=.mrun.config
262	coupled_dist=""
263	coupled_mode="mpi1"
264	cpp_opts=""
265	cpp_options=""
266	cpumax=0
267	cpurest=0
268	delete_temporary_catalog=true
269	do_batch=false
270	do_compile=true
271	do_remote=false
272	do_stagein=true
273	do_stageout=true
274	do_trace=false
275	email_notification="none"
276	exclude=""
277	executable=""
278	execution_error=false
279	fimm=false
280	fname=test
281	fromhost=""
282	global_revision=""
283	group_number=none
284	host=""
285	host_file=""
286	hp=""
287	ignore_archive_error=false
288	input_list=""
289	interpreted_config_file=""
290	job_catalog="~/job_queue"
291	job_on_file=""
292	keep_data_from_previous_run=false
293	link_local_input=false
294	link_local_output=false
295	localhost_realname=$(hostname)
296	local_compile=false
297	local_dvrserver_running=.FALSE.
298	locat=normal
299	mainprog=""
300	makefile=""
301	max_par_io_str=""
302	mc=$0
303	while [[ $(echo $mc \| grep -c "/") != 0 ]]
304	do
305	mc=`echo $mc \| cut -f2- -d"/"`
306	done
307	module_calls=""
308	mrun_script_name=$mc
309	netcdf_inc=""
310	netcdf_lib=""
311	netcdf_support=false
312	node_usage=default
313	numprocs=""
314	numprocs_atmos=0
315	numprocs_ocean=0
316	OOPT=""
317	openmp=false
318	output_list=""
319	package_list=""
320	punkte="..........................................................."
321	p3d_suffix=""
322	queue=none
323	read_from_config=""
324	restart_run=false
325	if [[ `hostname` = rte10 ]]
326	then
327	return_addres=133.5.185.60
328	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
329	elif [[ `hostname` = climate0 ]]
330	then
331	return_addres=165.132.26.68
332	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
333	else
334	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
335	fi
336	return_password=""
337	return_username=$LOGNAME
338	remotecall=false
339	remote_username=""
340	run_coupled_model=false
341	run_mode=""
342	scirocco=false
343	store_on_archive_system=false
344	striche=" ----------------------------------------------------------------------------"
345	silent=false
346	source_list=""
347	source_path=SOURCE
348	tasks_per_node=""
349	threads_per_task=1
350	tmpcreate=false
351	tmp_data_catalog=""
352	transfer_problems=false
353	usern=$LOGNAME
354	use_openmp=false
355	working_directory=`pwd`
356	TOPT=""
357	XOPT=""
358	zeit=$( date \| cut -c 12-19 )
359
360	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
361	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
362
363	typeset -R30 calltime
364	typeset -L20 spalte1
365	typeset -L40 spalte2
366	typeset -L60 spalte3
367	typeset -L35 string1=`date`
368	typeset -L12 string2=$usern
369	typeset -L12 string3=$localhost_realname
370	typeset -L12 string4
371	typeset -L12 string5
372	typeset -L30 version="MRUN 2.0 Rev$Rev: 818 $"
373
374
375
376	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
377	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
378
379	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
380	# EXPORTIERT WERDEN
381	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
382	export group_number input_list memory numprocs output_list queue run_mode
383
384
385
386	# FEHLERBEHANDLUNG
387	# BEI EXIT:
388	trap 'rm -rf $working_directory/tmp_mrun
389	if [[ $locat != localhost ]]
390	then
391	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
392	# then
393	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
394	#MRUN-calls on $localhost
395	#
396	#date and time user localhost remotehost termination mrun-command
397	#--------------------------------------------------------------------------------------------------------------------
398	#%STATEND%
399	# chmod 666 ${mrun_path}/statistik/mrun_statistik
400	# fi
401	#
402	# # EINTRAG IN DIE STATISTIK-DATEI
403	# string4=$host
404	# string5=$locat
405	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
406	# then
407	# if [[ $do_batch = true ]]
408	# then
409	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
410	# else
411	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
412	# fi
413	# fi
414	echo " " > /dev/null
415	fi
416
417	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
418	then
419
420	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
421	(( i = 0 ))
422	while (( i < iec ))
423	do
424	(( i = i + 1 ))
425	printf "\n *** Execution of ERROR-command:\n"
426	printf " >>> ${err_command[$i]}\n"
427	eval ${err_command[$i]}
428	done
429	if [[ -n $interpreted_config_file ]] then
430	rm -rf $interpreted_config_file
431	fi
432	if [[ -n .mrun_environment ]] then
433	rm -rf .mrun_environment
434	fi
435	if [[ $tmpcreate = true ]]
436	then
437	printf "\n *** Contents of \"$TEMPDIR\":\n"
438	ls -al; cd
439	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
440	fi
441	if [[ "$dvrserver_id" != "" ]]
442	then
443	echo "+++ killing dvrserver_id=$dvrserver_id"
444	kill $dvrserver_id
445	fi
446	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
447	then
448	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
449	fi
450	printf "\n\n+++ MRUN killed \n\n"
451	elif [[ $locat != control_c ]]
452	then
453	printf "\n\n --> all actions finished\n\n"
454	printf " Bye, bye $usern !!\n\n"
455	fi' exit
456
457
458	# BEI TERMINAL-BREAK:
459	trap 'rm -rf $working_directory/tmp_mrun
460	rm -rf $working_directory/tmp_check_namelist_files
461	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
462	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
463	then
464	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
465	fi
466	if [[ "$dvrserver_id" != "" ]]
467	then
468	echo "+++ killing dvrserver_id=$dvrserver_id"
469	kill $dvrserver_id
470	fi
471	printf "\n+++ MRUN killed by \"^C\" \n\n"
472	locat=control_c
473	exit
474	' 2
475
476
477	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
478	# BEEN SET
479	if [[ "$PALM_BIN" = "" ]]
480	then
481	printf "\n +++ environment variable PALM_BIN has not been set"
482	printf "\n please set it to the directory where the PALM scripts are located"
483	locat=palm_bin; exit
484	fi
485	export PATH=$PALM_BIN:$PATH
486
487
488
489	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
490	# FUER FOLGEJOBS BENOETIGT WIRD
491	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:z option
492	do
493	case $option in
494	(a) afname=$OPTARG;;
495	(A) store_on_archive_system=true; mc="$mc -A";;
496	(b) do_batch=true; mc="$mc -b";;
497	(B) delete_temporary_catalog=false; mc="$mc -B";;
498	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
499	(C) restart_run=true; mc="$mc -C";;
500	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
501	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
502	(F) job_on_file="-D"; mc="$mc -F";;
503	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
504	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
505	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
506	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
507	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
508	(I) ignore_archive_error=true; mc="$mc -I";;
509	(k) keep_data_from_previous_run=true; mc="$mc -k";;
510	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
511	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
512	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
513	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
514	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
515	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
516	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
517	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
518	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
519	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
520	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
521	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
522	(S) read_from_config=false; mc="$mc -S";;
523	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
524	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
525	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
526	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
527	(v) silent=true; mc="$mc -v";;
528	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
529	(x) do_trace=true;set -x; mc="$mc -x";;
530	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
531	(y) ocean_file_appendix=true; mc="$mc -y";;
532	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
533	(z) check_namelist_files=false; mc="$mc -z";;
534	(\?) printf "\n +++ unknown option $OPTARG \n"
535	printf "\n --> type \"$0 ?\" for available options \n"
536	locat=parameter;exit;;
537	esac
538	done
539
540
541	# EVTL. POSITIONSPARAMETER EINLESEN
542	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
543	shift OPTIND-1
544
545
546	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
547	if [[ "$1" = "?" ]]
548	then
549	(printf "\n *** mrun can be called as follows:\n"
550	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
551	printf "\n Description of available options:\n"
552	printf "\n Option Description Default-Value"
553	printf "\n -a base name of input files equiv. -d"
554	printf "\n -A archiving when using file-attribute fl"
555	printf "\n -b batch-job on local machine ---"
556	printf "\n -B do not delete temporary directory at end ---"
557	printf "\n -c configuration file .mrun.config"
558	printf "\n -d base name of files attached to program test"
559	printf "\n -D preprocessor(cpp)-directives \"\" "
560	printf "\n -F create remote job file only ---"
561	printf "\n -h execution host $localhost_realname"
562	printf "\n -i INPUT control list \"\" "
563	printf "\n -I archiving errors of previous batch-jobs"
564	printf "\n will be ignored"
565	printf "\n -k keep data from previous run"
566	printf "\n -K additional conditions for controling"
567	printf "\n usage of conditional code and"
568	printf "\n env-variables in configuration file \"\" "
569	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
570	printf "\n -M Makefile name Makefile"
571	printf "\n -n node usage (shared/not_shared) depending on -h"
572	printf "\n -o OUTPUT control list \"\" "
573	printf "\n -O use OpenMP ---"
574	printf "\n -p software package list \"\" "
575	printf "\n -q queue \"$queue\" "
576	printf "\n -r run control list (combines -i -o) \"\" "
577	printf "\n -s filenames of routines to be compiled \"\" "
578	printf "\n must end with .f, .f90, .F, or .c !"
579	printf "\n use \"..\" for more than one file and wildcards"
580	printf "\n -s TEST compiles all files with w-permit"
581	printf "\n -S config file interpreted by shellscript ---"
582	printf "\n -t allowed cpu-time in seconds (batch) 0"
583	printf "\n -T tasks per node depending on -h"
584	printf "\n -u username on remote machine \"\" "
585	printf "\n -v no prompt for confirmation ---"
586	printf "\n -w maximum parallel io streams as given by -X"
587	printf "\n -x tracing of mrun for debug purposes ---"
588	printf "\n -X # of processors (on parallel machines) 1"
589	printf "\n -y add appendix \"_O\" to all local output"
590	printf "\n files (ocean precursor runs followed by"
591	printf "\n coupled atmosphere-ocean runs) ---"
592	printf "\n -Y run coupled model, \"#1 #2\" with"
593	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
594	printf "\n "
595	printf "\n Possible values of positional parameter <modus>:"
596	printf "\n \"?\" - this outline \n\n") \| more
597	exit
598	elif [[ "$1" != "" ]]
599	then
600	printf "\n +++ positional parameter $1 unknown \n"
601	locat=parameter; exit
602	fi
603
604
605
606	# KURZE STARTMELDUNG
607	printf "\n*** $version "
608	printf "\n will be executed. Please wait ..."
609
610
611
612	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
613	if [[ ! -f $config_file ]]
614	then
615	printf "\n\n +++ configuration file: "
616	printf "\n $config_file"
617	printf "\n does not exist"
618	locat=connect; exit
619	fi
620
621
622	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
623	line=""
624	grep "%host_identifier" $config_file > tmp_mrun
625	while read line
626	do
627	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
628	then
629	HOSTNAME=`echo $line \| cut -d" " -s -f2`
630	host_identifier=`echo $line \| cut -d" " -s -f3`
631	if [[ $localhost_realname = $HOSTNAME ]]
632	then
633	localhost=$host_identifier
634	break
635	fi
636	fi
637	done < tmp_mrun
638
639	if [[ "$localhost" = "" ]]
640	then
641	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
642	printf "\n for local host \"$localhost_realname\"."
643	printf "\n Please add line"
644	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
645	printf "\n to the configuration file."
646	locat=localhost; exit
647	fi
648
649
650	# HOSTSPEZIFISCHE VARIABLEN SETZEN
651	case $localhost_realname in
652	(r1\|r2\|h01\|b01) archive_system=tivoli;;
653	(cs*) archive_system=ut;;
654	(fimm.bccs.uib.no) fimm=true;;
655	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
656	(scirocco) scirocco=true;;
657	esac
658
659
660
661	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
662	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
663	[[ "$afname" = "" ]] && afname=$fname
664
665
666	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
667	if [[ "$run_mode" != "" ]]
668	then
669	input_list="$input_list $run_mode"
670	output_list="$output_list $run_mode"
671	fi
672
673
674	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
675	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
676	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
677	# STARTET)
678	if [[ "$fromhost" = "" ]]
679	then
680	fromhost=$localhost
681	fi
682
683
684	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
685	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
686	then
687	source_list=TEST
688	local_compile=true
689	host=$localhost
690	fi
691
692
693	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
694	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
695	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
696	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
697	if [[ -n $host && "$host" != $localhost ]]
698	then
699	do_batch=true
700	do_remote=true
701	case $host in
702	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
703	(*) printf "\n"
704	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
705	printf "\n is not available"
706	locat=nqs; (( iec = 0 )); exit;;
707	esac
708	else
709	host=$localhost
710	fi
711
712
713	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
714	if [[ -n $additional_conditions ]]
715	then
716	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
717	cond1=`echo $additional_conditions \| cut -d" " -f1`
718	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
719	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
720	if [[ -n $dummy ]]
721	then
722	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
723	locat=options; exit
724	fi
725	block=_$cond1
726	[[ -n $cond2 ]] && block=${block}_$cond2
727	fi
728
729
730	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
731	if [[ $run_coupled_model = true ]]
732	then
733
734	if [[ -n $coupled_dist ]]
735	then
736
737	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
738	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
739
740	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
741	then
742
743	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
744	printf "\n PEs (total) : $numprocs"
745	printf "\n PEs (atmosphere): $numprocs_atmos"
746	printf "\n PEs (ocean) : $numprocs_ocean"
747	locat=coupling; exit
748
749	fi
750
751	else
752
753	(( numprocs_ocean = $numprocs / 2 ))
754	(( numprocs_atmos = $numprocs / 2 ))
755
756	fi
757	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
758
759	# GET coupled_mode FROM THE CONFIG FILE
760	line=""
761	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
762	while read line
763	do
764	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
765	then
766	coupled_mode="mpi2"
767	fi
768	done < tmp_mrun
769
770	fi
771
772
773	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
774	# ARCHIVIERUNG FEHLGESCHLAGEN IST
775	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
776	then
777	if [[ $ignore_archive_error = false ]]
778	then
779	printf "\n +++ data archiving of previous run failed"
780	printf "\n see directory \~/job_queue on remote machine"
781	locat=archive; exit
782	else
783	printf "\n +++ warning: data archiving in a previous run failed"
784	printf "\n MRUN continues, trying to get backup copy"
785	fi
786	fi
787
788
789
790	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
791	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
792	if [[ "$read_from_config" = false ]]
793	then
794
795	[[ $silent = false ]] && printf "\n Reading the configuration file... "
796	while read zeile
797	do
798	[[ $silent = false ]] && printf "."
799
800
801	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
802	# ERSETZEN
803	eval zeile=\"$zeile\"
804
805
806	# INTERPRETATION DER ZEILE
807	if [[ "$(echo $zeile)" = "" ]]
808	then
809	# LEERZEILE, KEINE AKTION
810	continue
811
812	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
813	then
814
815	# ZEILE IST KOMMENTARZEILE
816	true
817
818	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
819	then
820
821	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
822	zeile=$(echo $zeile \| cut -c2-)
823	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
824	var=`echo $zeile \| cut -d" " -f1`
825	value=`echo $zeile \| cut -d" " -s -f2`
826	for_host=`echo $zeile \| cut -d" " -s -f3`
827	for_cond1=`echo $zeile \| cut -d" " -s -f4`
828	for_cond2=`echo $zeile \| cut -d" " -s -f5`
829
830	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
831	then
832
833	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
834	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
835	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
836
837
838	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
839	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
840	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
841	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
842	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
843	# KONFIGURATIONSDATEI
844	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
845	then
846	eval $var=\$value
847
848	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
849	if [[ $do_trace = true ]]
850	then
851	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
852	fi
853	fi
854
855	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
856	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
857	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
858	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
859	if [[ $var = host ]]
860	then
861	if [[ -n $host && "$host" != $localhost ]]
862	then
863	do_batch=true
864	do_remote=true
865	case $host in
866	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
867	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
868	printf "\n is not available"
869	locat=nqs; exit;;
870	esac
871	else
872	host=$localhost
873	fi
874	fi
875
876	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
877	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
878	# DEN PROGRAMMEN BENOETIGT WERDEN
879	export $var
880	fi
881
882
883
884
885	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
886	then
887
888	# ZEILE DEFINIERT ERROR-KOMMANDO
889	(( iec = iec + 1 ))
890	zeile=$(echo $zeile \| cut -c4-)
891	err_command[$iec]="$zeile"
892
893	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
894	then
895
896	# ZEILE DEFINIERT INPUT-KOMMANDO
897	(( iic = iic + 1 ))
898	zeile=$(echo $zeile \| cut -c4-)
899	in_command[$iic]="$zeile"
900
901	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
902	then
903
904	# ZEILE DEFINIERT OUTPUT-KOMMANDO
905	(( ioc = ioc + 1 ))
906	zeile=$(echo $zeile \| cut -c4-)
907	out_command[$ioc]="$zeile"
908
909	else
910
911	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
912	# s2a: in/out - Feld
913	# s2b: loc - Feld (optional)
914	# s2c: tr/ar - Feld (optional)
915	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
916	s1=`echo $zeile \| cut -d" " -f1`
917	s2=`echo $zeile \| cut -d" " -s -f2`
918	s2a=$(echo $s2 \| cut -d":" -f1)
919	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
920	then
921	s2b=""
922	s2c=""
923	else
924	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
925	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
926	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
927	fi
928	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
929	s3=`echo $zeile \| cut -d" " -f3`
930	s4=`echo $zeile \| cut -d" " -s -f4`
931	s5=`echo $zeile \| cut -d" " -s -f5`
932	s6=`echo $zeile \| cut -d" " -s -f6`
933
934
935	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
936	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
937	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
938	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
939	# HANDEN SEIN MUSS (D.H. s2b = loc)
940	IFSALT="$IFS"; IFS="$IFS:"
941	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
942	then
943	found=false
944	for actual in $input_list
945	do
946	for formal in $s3
947	do
948	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
949	done
950	done
951	if [[ $found = true ]]
952	then
953	(( iin = iin + 1 ))
954	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
955	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
956	extin[$iin]=$s6
957	fi
958	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
959	then
960	found=false
961	for actual in $output_list
962	do
963	for formal in $s3
964	do
965	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
966	done
967	done
968	if [[ $found = true ]]
969	then
970	(( iout = iout + 1 ))
971	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
972	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
973	fi
974	elif [[ "$s2a" != in && "$s2a" != out ]]
975	then
976	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
977	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
978	locat=connect; exit
979	fi
980	IFS="$IFSALT"
981	fi
982	done < $config_file
983
984	else
985
986
987	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
988	[[ $silent = false ]] && printf "..."
989	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
990	export interpreted_config_file=.icf.$RANDOM
991
992
993
994	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
995	# VERFUEGUNG STELLEN
996	cat > .mrun_environment << %%END%%
997	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
998	config_file = '$config_file', do_remote = '$do_remote',
999	do_trace = '$do_trace', host = '$host',
1000	input_list = '$input_list', icf = '$interpreted_config_file',
1001	localhost = '$localhost', output_list = '$output_list' /
1002
1003	%%END%%
1004
1005	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1006	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1007	mrun_memory=$memory
1008	mrun_group_number=$group_number
1009	mrun_cpumax=$cpumax
1010	mrun_numprocs=$numprocs
1011
1012	if [[ $localhost_realname = "sx-fep" ]]
1013	then
1014	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1015	else
1016
1017	if [[ "$host" != $localhost ]]
1018	then
1019
1020	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1021	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1022	if [[ $? != 0 ]]
1023	then
1024	printf "\n\n +++ no interpret_config found"
1025	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1026	locat=interpret_config; exit
1027	fi
1028	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1029	$interpret_config_executable
1030
1031	else
1032
1033	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1034	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1035	then
1036	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1037	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1038	locat=interpret_config; exit
1039	else
1040	interpret_config${block}.x
1041	fi
1042
1043	fi
1044	fi
1045	rm .mrun_environment
1046
1047
1048	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1049	chmod u+x $interpreted_config_file
1050	export PATH=$PATH:.
1051	. $interpreted_config_file
1052	rm $interpreted_config_file
1053
1054
1055	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1056	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1057	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1058	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1059	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1060	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1061	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1062
1063	fi
1064
1065
1066	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1067	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1068	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1069	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1070	if [[ "$SOURCES_COMPLETE" = "" ]]
1071	then
1072
1073	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1074	# VEREINBART WURDE
1075	source_path=""
1076	line=""
1077	grep "%source_path" $config_file > tmp_mrun
1078	while read line
1079	do
1080	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1081	then
1082	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1083	then
1084	global_source_path=`echo $line \| cut -d" " -f2`
1085	fi
1086	fi
1087	done < tmp_mrun
1088
1089	line=""
1090	found=false
1091	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1092	while read line
1093	do
1094	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1095	then
1096	if [[ $found = true ]]
1097	then
1098	printf "\n\n +++ more than one source path found in configuration file"
1099	printf "\n for local host \"$localhost\" "
1100	locat=source_path; exit
1101	fi
1102	source_path=`echo $line \| cut -d" " -f2`
1103	found=true
1104	fi
1105	done < tmp_mrun
1106	rm tmp_mrun
1107
1108	if [[ "$source_path" = "" ]]
1109	then
1110	if [[ "$global_source_path" != "" ]]
1111	then
1112	source_path=$global_source_path
1113	else
1114	printf "\n\n +++ no source path found in configuration file"
1115	printf "\n for local host \"$localhost\" "
1116	locat=source_path; exit
1117	fi
1118	fi
1119	eval source_path=$source_path
1120
1121	if [[ ! -d $source_path ]]
1122	then
1123	printf "\n\n +++ source path \"$source_path\" on local host"
1124	printf "\n \"$localhost\" does not exist"
1125	locat=source_path; exit
1126	fi
1127
1128	fi
1129
1130
1131	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1132	# DURCH OPTION -G MITGETEILT)
1133	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1134	then
1135	global_revision=`svnversion $source_path 2>/dev/null`
1136	global_revision="Rev: $global_revision"
1137	fi
1138
1139
1140	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1141	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1142	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1143	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1144	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1145	if [[ -n $host && "$host" != $localhost ]]
1146	then
1147	do_batch=true
1148	do_remote=true
1149	case $host in
1150	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck\|lckordi) true;;
1151	(*) printf "\n"
1152	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1153	printf "\n is not available"
1154	locat=nqs; (( iec = 0 )); exit;;
1155	esac
1156	else
1157	host=$localhost
1158	fi
1159
1160
1161	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1162	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1163	then
1164
1165	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1166	if [[ ! -n $numprocs ]]
1167	then
1168	printf "\n"
1169	printf "\n +++ option \"-K parallel\" requires additional specification"
1170	printf "\n of the number of processors to be used by"
1171	printf "\n mrun-option \"-X\" or by environment-variable"
1172	printf "\n \"numprocs\" in the configuration file"
1173	locat=numprocs; (( iec = 0 )); exit
1174	fi
1175
1176	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1177	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1178	# GESAMTPROZESSORANZAHL IST
1179	if [[ "$tasks_per_node" = "" ]]
1180	then
1181	printf "\n"
1182	printf "\n +++ option \"-T\" (tasks per node) is missing"
1183	printf "\n set -T option or define tasks_per_node in the config file"
1184	locat=tasks_per_node; (( iec = 0 )); exit
1185	fi
1186	(( ival = $tasks_per_node ))
1187	(( pes = numprocs ))
1188	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1189	# then
1190	# (( pes = pes - 1 ))
1191	# fi
1192	(( ii = pes / ival ))
1193	if (( pes - ii * ival > 0 ))
1194	then
1195	printf "\n"
1196	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1197	printf "\n divisor of the total number of processors (option \"-X\")"
1198	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1199	locat=tasks_per_node; (( iec = 0 )); exit
1200	fi
1201
1202
1203	# IBMY HAT NUR EINEN KNOTEN
1204	if [[ $host = ibmy ]]
1205	then
1206	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1207	then
1208	printf "\n"
1209	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1210	printf "\n total number of processors (option \"-X\")"
1211	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1212	locat=tasks_per_node; (( iec = 0 )); exit
1213	fi
1214	fi
1215
1216
1217	# SETTINGS FOR SUBJOB-COMMAND
1218	TOPT="-T $tasks_per_node"
1219	OOPT="-O $threads_per_task"
1220
1221	# GESAMTZAHL DER KNOTEN BESTIMMEN
1222	if [[ "$tasks_per_node" != "" ]]
1223	then
1224	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1225	fi
1226
1227	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1228	# SETZEN
1229	if [[ $node_usage = default ]]
1230	then
1231	if [[ $host = ibms ]]
1232	then
1233	node_usage=shared
1234	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1235	then
1236	node_usage=singlejob
1237	else
1238	node_usage=not_shared
1239	fi
1240	fi
1241
1242	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1243	then
1244	printf "\n"
1245	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1246	printf "\n \"shared\" or \"not_shared\""
1247	locat=tasks_per_node; (( iec = 0 )); exit
1248	fi
1249
1250	fi
1251
1252	# PRUEFEN, OB HOSTFILE EXISTIERT
1253	if [[ -n $hostfile ]]
1254	then
1255	if [[ ! -f $hostfile ]]
1256	then
1257	printf "\n"
1258	printf "\n +++ hostfile \"$hostfile\" does not exist"
1259	locat=hostfile; exit
1260	fi
1261	fi
1262
1263	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1264	if [[ $host = ibmy && $do_remote = false ]]
1265	then
1266	if [[ ! -f $HOME/.rhosts ]]
1267	then
1268	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1269	printf "\n\n *** file:"
1270	printf "\n $HOME/.rhosts"
1271	printf "\n was created\n"
1272	fi
1273	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1274	then
1275	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1276	printf "\n\n *** file:"
1277	printf "\n $HOME/.rhosts"
1278	printf "\n was extended by the name of the current host\n"
1279	fi
1280	fi
1281
1282
1283	# Set default value for the maximum number of parallel io streams
1284	if [[ "$maximum_parallel_io_streams" = "" ]]
1285	then
1286	maximum_parallel_io_streams=$numprocs
1287	fi
1288
1289
1290	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1291	if [[ $queue = none ]]
1292	then
1293	case $host in
1294	(ibmh) queue=no_class;;
1295	(ibmkisti) queue=class.32plus;;
1296	(ibmy) queue=parallel;;
1297	(lckyoto) queue=ph;;
1298	(lcsgib) queue=bigq;;
1299	(lcsgih) queue=bigq;;
1300	(lctit) queue=S;;
1301	(nech) queue=none;;
1302	(necriam) queue=SP;;
1303	(unics) queue=unics;;
1304	esac
1305	fi
1306
1307
1308	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1309	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1310	# ERMITTELN
1311	(( i = 0 ))
1312	while (( i < iin ))
1313	do
1314	(( i = i + 1 ))
1315	(( maxcycle = 0 ))
1316
1317	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1318	if [[ "${actionin[$i]}" = di ]]
1319	then
1320	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1321	# REM-MASCHINE AUSWERTEN
1322	eval filename=${pathin[$i]}/${endin[$i]}
1323	else
1324	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1325	# REM-MASCHINE AUSWERTEN
1326	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1327	fi
1328
1329	# PRUEFEN AUF VORHANDENSEIN
1330	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1331	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1332	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1333	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1334	then
1335	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1336	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1337	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1338	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1339	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1340	if [[ "${transin[$i]}" != "locopt" ]]
1341	then
1342	printf "\n\n +++ INPUT-file: "
1343	if [[ "${extin[$i]}" = "" ]]
1344	then
1345	printf "\n $filename"
1346	else
1347	printf "\n $filename.${extin[$i]}"
1348	fi
1349	printf "\n does not exist\n"
1350	locat=input; exit
1351	else
1352	transin[$i]="unavailable"
1353	fi
1354	else
1355
1356	# ZYKLUSNUMMER FESTSTELLEN
1357	ls -1 -d $filename > filelist 2>/dev/null
1358	ls -1 -d $filename.* >> filelist 2>/dev/null
1359	while read zeile
1360	do
1361	cycle=$(print $zeile \| cut -f2 -d".")
1362	if [[ "$cycle" = "$zeile" ]]
1363	then
1364	(( icycle = 0 ))
1365	elif [[ "$cycle" = "${extin[$i]}" ]]
1366	then
1367	(( icycle = 0 ))
1368	else
1369	(( icycle = $cycle ))
1370	fi
1371	if (( icycle > maxcycle ))
1372	then
1373	(( maxcycle = icycle ))
1374	file_to_be_used=$zeile
1375	fi
1376	done <filelist
1377	rm filelist
1378
1379	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1380	if (( maxcycle > 0 ))
1381	then
1382	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1383	then
1384	filename=${filename}.$maxcycle.${extin[$i]}
1385	else
1386	filename=${filename}.$maxcycle
1387	fi
1388	else
1389	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1390	then
1391	filename=${filename}.${extin[$i]}
1392	fi
1393	fi
1394
1395	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1396	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1397	absnamein[$i]=$filename
1398	if (( maxcycle > 0 ))
1399	then
1400	if [[ "${actionin[$i]}" = di ]]
1401	then
1402	frelin[$i]=${endin[$i]}.$maxcycle
1403	else
1404	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1405	fi
1406	else
1407	if [[ "${actionin[$i]}" = di ]]
1408	then
1409	frelin[$i]=${endin[$i]}
1410	else
1411	frelin[$i]=${afname}${endin[$i]}
1412	fi
1413	fi
1414
1415	fi
1416	done
1417
1418
1419	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1420	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1421	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1422	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1423	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1424	(( i = 0 ))
1425	while (( i < iout ))
1426	do
1427	(( i = i + 1 ))
1428	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1429	then
1430	if [[ "${actionout[$i]}" = tr ]]
1431	then
1432	actionout[$i]=""
1433	elif [[ "${actionout[$i]}" = trpe ]]
1434	then
1435	actionout[$i]=pe
1436	elif [[ "${actionout[$i]}" = tra ]]
1437	then
1438	actionout[$i]=a
1439	fi
1440	(( maxcycle = 0 ))
1441	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1442	eval catalogname=${pathout[$i]}
1443	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1444	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1445	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1446	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1447	then
1448
1449	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1450	if cat /dev/null > $filename
1451	then
1452	rm $filename
1453	else
1454
1455	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1456	if [[ ! -d $catalogname ]]
1457	then
1458	if mkdir -p $catalogname
1459	then
1460	printf "\n\n *** directory:"
1461	printf "\n $catalogname"
1462	printf "\n was created\n"
1463	else
1464	printf "\n\n +++ OUTPUT-file:"
1465	printf "\n $filename"
1466	printf "\n cannot be created, because directory does not exist"
1467	printf "\n and cannot be created either"
1468	printf "\n"
1469	locat=output ; exit
1470	fi 2>/dev/null
1471	else
1472	printf "\n\n +++ OUTPUT-file:"
1473	printf "\n $filename"
1474	printf "\n cannot be created, although directory exists"
1475	printf "\n"
1476	locat=output ; exit
1477	fi
1478	fi 2>/dev/null
1479	else
1480
1481	# ZYKLUSNUMMER FESTSTELLEN
1482	ls -1 -d $filename > filelist 2>/dev/null
1483	ls -1 -d $filename.* >> filelist 2>/dev/null
1484	while read zeile
1485	do
1486	cycle=$(print $zeile \| cut -f2 -d".")
1487	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1488	then
1489	(( icycle = 1 ))
1490	else
1491	(( icycle = $cycle + 1 ))
1492	fi
1493	if (( icycle > maxcycle ))
1494	then
1495	(( maxcycle = icycle ))
1496	fi
1497	done <filelist
1498	rm filelist
1499	fi
1500
1501	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1502	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1503	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1504	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1505	if [[ "${actionout[$i]}" != a ]]
1506	then
1507	if (( maxcycle > 0 ))
1508	then
1509	filename=${filename}.$maxcycle
1510	if cat /dev/null > $filename
1511	then
1512	rm $filename
1513	else
1514	printf "\n +++ OUTPUT-file:"
1515	printf "\n $filename"
1516	printf "\n cannot be created"
1517	locat=output ; exit
1518	fi
1519	fi
1520	else
1521	(( maxcycle = maxcycle - 1 ))
1522	if (( maxcycle > 0 ))
1523	then
1524	filename=${filename}.$maxcycle
1525	fi
1526	fi
1527
1528	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1529	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1530	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1531	pathout[$i]=$filename
1532	if (( maxcycle > 0 ))
1533	then
1534	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1535	else
1536	frelout[$i]=${fname}${endout[$i]}
1537	fi
1538
1539	fi
1540	done
1541
1542
1543	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1544	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1545	then
1546	if [[ "$dvr_inc" = "" ]]
1547	then
1548	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1549	printf "\n This is required for the dvrp_graphics package.\n"
1550	locat=dvr; exit
1551	fi
1552	if [[ "$dvr_lib" = "" ]]
1553	then
1554	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1555	printf "\n This is required for the dvrp_graphics package.\n"
1556	locat=dvr; exit
1557	fi
1558	fi
1559
1560
1561	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1562	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1563	# UEBERSETZT ZU WERDEN)
1564	if [[ "$mainprog" = "" && "$executable" = "" ]]
1565	then
1566	printf "\n +++ neither main program nor executable defined"
1567	locat=source; exit
1568	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1569	then
1570	printf "\n +++ main program as well as executable defined"
1571	locat=source; exit
1572	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1573	then
1574	do_compile=false
1575	fi
1576
1577
1578	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1579	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1580	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1581	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1582	then
1583	rm -rf SOURCES_FOR_RUN_$fname
1584	mkdir SOURCES_FOR_RUN_$fname
1585	fi
1586
1587
1588	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1589	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1590	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1591	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1592	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1593	then
1594
1595	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1596	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1597
1598
1599	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1600	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1601	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1602	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1603	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1604	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1605	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1606	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1607	# GESAMMELT
1608	if [[ "$source_list" = WRITE_PERMIT ]]
1609	then
1610
1611	source_list=""
1612	cd $source_path
1613
1614
1615	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1616	Names=$(ls -1 *.f90 2>&1)
1617	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1618	Names=$(ls -1 *.F90 2>&1)
1619	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1620	Names=$(ls -1 *.F 2>&1)
1621	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1622	Names=$(ls -1 *.f 2>&1)
1623	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1624	Names=$(ls -1 *.c 2>&1)
1625	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1626
1627
1628	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1629	for dateiname in $Filenames
1630	do
1631	if [[ -w $dateiname ]]
1632	then
1633	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1634	then
1635	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1636	source_list=$source_list"$dateiname "
1637	fi
1638	fi
1639	done
1640
1641	cd - > /dev/null
1642
1643
1644	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1645	then
1646
1647	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1648	source_list=""
1649	cd $source_path
1650
1651
1652	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1653	if [[ ! -d .svn ]]
1654	then
1655	printf "\n\n +++ source directory"
1656	printf "\n \"$source_path\" "
1657	printf "\n is not under control of \"subversion\"."
1658	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1659	fi
1660
1661
1662	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1663	Filenames=""
1664	svn status > tmp_mrun
1665	while read line
1666	do
1667	firstc=`echo $line \| cut -c1`
1668	if [[ $firstc = M \|\| $firstc = "?" ]]
1669	then
1670	Name=`echo "$line" \| cut -c8-`
1671	extension=`echo $Name \| cut -d. -f2`
1672	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1673	then
1674	Filenames="$Filenames "$Name
1675	fi
1676	fi
1677	done < tmp_mrun
1678
1679
1680	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1681	for dateiname in $Filenames
1682	do
1683	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1684	source_list=$source_list"$dateiname "
1685	done
1686
1687	cd - > /dev/null
1688
1689
1690	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1691	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1692	# VORHANDEN
1693	elif [[ "$source_list" != "" && $restart_run != true ]]
1694	then
1695
1696	cd $source_path
1697
1698	for filename in $source_list
1699	do
1700
1701	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1702	if [[ $(print $filename \| grep -c "/") != 0 ]]
1703	then
1704	printf "\n +++ source code file: $filename"
1705	printf "\n must not contain (\"/\") "
1706	locat=source; exit
1707	fi
1708
1709	if [[ ! -f $filename ]]
1710	then
1711	printf "\n +++ source code file: $filename"
1712	printf "\n does not exist"
1713	locat=source; exit
1714	else
1715	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1716	fi
1717
1718	done
1719
1720	cd - > /dev/null
1721
1722	fi
1723
1724
1725	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1726	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1727	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1728	if [[ $restart_run != true ]]
1729	then
1730
1731	if [[ ! -f "$source_path/$mainprog" ]]
1732	then
1733	printf "\n\n +++ main program: $mainprog"
1734	printf "\n does not exist in source directory"
1735	printf "\n \"$source_path\"\n"
1736	locat=source; exit
1737	else
1738	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1739	then
1740	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1741	source_list=${mainprog}" $source_list"
1742	fi
1743	fi
1744	fi
1745
1746
1747	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1748	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1749	if [[ "$restart_run" != true ]]
1750	then
1751	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1752	if [[ ! -f $makefile ]]
1753	then
1754	printf "\n +++ file \"$makefile\" does not exist"
1755	locat=make; exit
1756	else
1757	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1758	fi
1759	fi
1760
1761
1762	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1763	if [[ $restart_run != true && "$add_source_path" != "" ]]
1764	then
1765
1766	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1767	if [[ ! -d $add_source_path ]]
1768	then
1769	printf "\n\n +++ WARNING: additional source code directory"
1770	printf "\n \"$add_source_path\" "
1771	printf "\n does not exist or is not a directory."
1772	printf "\n No source code will be used from this directory!\n"
1773	add_source_path=""
1774	sleep 3
1775	else
1776
1777	cd $add_source_path
1778	found=false
1779
1780	Names=$(ls -1 *.f90 2>&1)
1781	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1782	Names=$(ls -1 *.F90 2>&1)
1783	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1784	Names=$(ls -1 *.F 2>&1)
1785	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1786	Names=$(ls -1 *.f 2>&1)
1787	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1788	Names=$(ls -1 *.c 2>&1)
1789	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1790
1791	cd - > /dev/null
1792	cd SOURCES_FOR_RUN_$fname
1793
1794	# COPY MAKEFILE IF EXISTING
1795	if [[ -f $add_source_path/Makefile ]]
1796	then
1797	printf "\n\n *** user Makefile from directory"
1798	printf "\n \"$add_source_path\" is used \n"
1799	sleep 1
1800	cp $add_source_path/Makefile .
1801	fi
1802
1803	for dateiname in $AddFilenames
1804	do
1805	if [[ -f $dateiname ]]
1806	then
1807	printf "\n +++ source code file \"$dateiname\" found in additional"
1808	printf "\n source code directory \"$add_source_path\" "
1809	printf "\n but was also given with option \"-s\" which means that it should be taken"
1810	printf "\n from directory \"$source_path\"."
1811	locat=source; exit
1812	fi
1813
1814	cp $add_source_path/$dateiname .
1815	source_list="$source_list $dateiname"
1816
1817	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1818	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1819	then
1820	printf "\n\n +++ user file \"$dateiname\" "
1821	printf "\n is not listed in Makefile \n"
1822	locat=source; exit
1823	else
1824
1825	# Default User-Interface von der Liste entfernen, falls Datei
1826	# ein User-Interface enthaelt
1827	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1828	# then
1829	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1830	# then
1831	# rm -rf user_interface.f90
1832	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1833	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1834	# printf "\n since a user-interface is found in file"
1835	# printf "\n \"$add_source_path/$dateiname\" \n"
1836	# sleep 3
1837	# else
1838	if [[ $found = false ]]
1839	then
1840	found=true
1841	printf "\n\n *** following user file(s) added to the"
1842	printf " files to be translated:\n "
1843	fi
1844	printf "$dateiname "
1845	sleep 0.5
1846	fi
1847	done
1848	[[ $found = true ]] && printf "\n"
1849	cd - > /dev/null
1850	fi
1851	fi
1852
1853
1854	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1855	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1856	if [[ $restart_run != true && -n $package_list ]]
1857	then
1858
1859	cd $source_path
1860
1861	for package in $package_list
1862	do
1863
1864	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1865
1866	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1867	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1868	# LIEFERT
1869	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1870
1871
1872	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1873	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1874	for source_list_name in $package_source_list
1875	do
1876	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1877	then
1878
1879	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1880	ending=`echo $source_list_name \| cut -f2 -d.`
1881	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1882	then
1883	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1884	source_list="$source_list $source_list_name"
1885	fi
1886	fi
1887	done
1888	done
1889
1890	cd - > /dev/null
1891	fi
1892
1893
1894	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1895	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1896	# if [[ "$restart_run" != true ]]
1897	# then
1898	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1899	# if [[ ! -f $makefile ]]
1900	# then
1901	# printf "\n +++ file \"$makefile\" does not exist"
1902	# locat=make; exit
1903	# else
1904	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1905	# fi
1906	# fi
1907
1908	fi # do_compile=true
1909
1910
1911	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1912	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1913	if [[ $do_compile = true ]]
1914	then
1915
1916	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1917	# ZUSAMMENSETZEN
1918	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1919	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1920	then
1921	cpp_options="${cpp_options},-D__ibm=__ibm"
1922	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1923	then
1924	cpp_options="$cpp_options -D__nec"
1925	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1926	then
1927	cpp_options="$cpp_options -D__lc"
1928	else
1929	cpp_options="$cpp_options -D__$localhost"
1930	fi
1931
1932	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1933	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1934	then
1935	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1936	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1937	else
1938	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1939	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1940	fi
1941
1942	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1943	if [[ -n $package_list ]]
1944	then
1945	for package in $package_list
1946	do
1947	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1948	then
1949	if [[ $package != "dvrp_graphics+1PE" ]]
1950	then
1951	cpp_options="${cpp_options},-D__$package=__$package"
1952	else
1953	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1954	export use_seperate_pe_for_dvrp_output=true
1955	fi
1956	else
1957	if [[ $package != "dvrp_graphics+1PE" ]]
1958	then
1959	cpp_options="$cpp_options -D__$package"
1960	else
1961	cpp_options="$cpp_options -D__dvrp_graphics"
1962	export use_seperate_pe_for_dvrp_output=true
1963	fi
1964	fi
1965	done
1966	fi
1967
1968	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1969	if [[ -n $cpp_opts ]]
1970	then
1971	for popts in $cpp_opts
1972	do
1973	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1974	then
1975	cpp_options="${cpp_options},-D__$popts=__$popts"
1976	else
1977	cpp_options="$cpp_options -D__$popts"
1978	fi
1979	done
1980	fi
1981
1982	else
1983
1984
1985	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1986	if [[ $do_remote = false ]]
1987	then
1988	if [[ ! -f $executable ]]
1989	then
1990	printf "\n +++ executable file: $executable"
1991	printf "\n does not exist"
1992	locat=executable; exit
1993	fi
1994	fi
1995	fi
1996
1997
1998	# JOBMODUS FESTSTELLEN
1999	if [[ "$ENVIRONMENT" = BATCH ]]
2000	then
2001	jobmo=BATCH
2002	else
2003	jobmo=INTERACTIVE
2004	fi
2005
2006
2007	# no interactive runs on lctit
2008	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2009	then
2010	printf "\n +++ no interactive runs allowed on host \"$host\" "
2011	printf "\n please submit batch job using mrun option \"-b\" \n"
2012	locat=normal; exit
2013	fi
2014
2015
2016	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2017	# DURCH BENUTZER ANDERWEITIG VEREINBART
2018	if [[ "$compiler_name" = "" ]]
2019	then
2020
2021	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2022	locat=compiler_name; exit
2023
2024	fi
2025
2026
2027	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2028	[[ $localhost = necriam ]] && compiler_name=mpif90
2029
2030
2031
2032	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2033	kennung=$RANDOM
2034	if [[ "$tmp_user_catalog" = "" ]]
2035	then
2036	if [[ $localhost = ibmh ]]
2037	then
2038	tmp_user_catalog=$SCRATCH
2039	elif [[ $localhost = nech ]]
2040	then
2041	tmp_user_catalog=$WRKSHR
2042	else
2043	tmp_user_catalog=/tmp
2044	fi
2045	fi
2046	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2047
2048
2049	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2050	# BESTIMMEN
2051	if [[ "$tmp_data_catalog" = "" ]]
2052	then
2053	if [[ $localhost = nech ]]
2054	then
2055	tmp_data_catalog=$WRKSHR/mrun_restart_data
2056	else
2057	tmp_data_catalog=/tmp/mrun_restart_data
2058	fi
2059	fi
2060
2061
2062	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2063	# ERSETZEN
2064	if [[ $do_remote = false && $do_compile = true ]]
2065	then
2066	eval fopts=\"$fopts\"
2067	eval lopts=\"$lopts\"
2068	fi
2069
2070
2071
2072	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2073	fopts="$fopts $netcdf_inc $dvr_inc"
2074	lopts="$lopts $netcdf_lib $dvr_lib"
2075	ROPTS="$ropts"
2076	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckordi) && -n $numprocs ]]
2077	then
2078	XOPT="-X $numprocs"
2079	fi
2080
2081
2082
2083	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2084	# GRAMM BENOETIGT
2085	done=false
2086	while [[ $done = false ]]
2087	do
2088	cputime=$cpumax
2089	if (( $cputime == 0 ))
2090	then
2091	if [[ $do_batch = true ]]
2092	then
2093	printf "\n +++ cpu-time is undefined"
2094	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2095	printf "\n >>> "
2096	read cputime 1>/dev/null 2>&1
2097	else
2098	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2099	fi
2100	else
2101	done=true
2102	fi
2103	cpumax=$cputime
2104	done
2105
2106	(( minuten = cputime / 60 ))
2107	(( sekunden = cputime - minuten * 60 ))
2108
2109
2110	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2111	if [[ $do_batch = true ]]
2112	then
2113	done=false
2114	while [[ $done = false ]]
2115	do
2116	if (( memory == 0 ))
2117	then
2118	printf "\n +++ memory demand is undefined"
2119	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2120	printf "\n >>> "
2121	read memory 1>/dev/null 2>&1
2122	else
2123	done=true
2124	fi
2125	done
2126	fi
2127
2128
2129	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2130	if [[ $do_remote = true && -z $remote_username ]]
2131	then
2132	while [[ -z $remote_username ]]
2133	do
2134	printf "\n +++ username on remote host \"$host\" is undefined"
2135	printf "\n >>> Please type username:"
2136	printf "\n >>> "
2137	read remote_username
2138	done
2139	mc="$mc -u$remote_username"
2140	fi
2141
2142
2143	# set module load command and export for subjob
2144	if [[ "$modules" != "" ]]
2145	then
2146	if [[ $host = lctit ]]
2147	then
2148	export module_calls=". $modules"
2149	else
2150	export module_calls="module load ${modules};"
2151	fi
2152	fi
2153
2154	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2155	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2156	then
2157	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2158	then
2159	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2160	fi
2161	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2162	# then
2163	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2164	# echo "*** module_calls = $module_calls"
2165	# fi
2166	fi
2167
2168
2169	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2170	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2171	then
2172	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2173	then
2174	mpilib=mpt
2175	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2176	then
2177	mpilib=mvapich
2178	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2179	then
2180	mpilib=impi
2181	fi
2182	fi
2183
2184
2185
2186	###########################################################################
2187	# HEADER-AUSGABE
2188	###########################################################################
2189
2190
2191	calltime=$(date)
2192	printf "\n"
2193	# [[ $silent = false ]] && clear
2194	printf "#--------------------------------------------------------------# \n"
2195	printf "\| $version$calltime \| \n"
2196	printf "\| \| \n"
2197	spalte1="called on:"; spalte2=$localhost_realname
2198	printf "\| $spalte1$spalte2 \| \n"
2199	if [[ $local_compile = false ]]
2200	then
2201	if [[ $do_remote = true ]]
2202	then
2203	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2204	else
2205	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2206	fi
2207	else
2208	spalte1="compiling test only!"; spalte2=""
2209	fi
2210	printf "\| $spalte1$spalte2 \| \n"
2211	if [[ -n $numprocs ]]
2212	then
2213	spalte1="number of PEs:"; spalte2=$numprocs
2214	printf "\| $spalte1$spalte2 \| \n"
2215	fi
2216	if [[ -n $tasks_per_node ]]
2217	then
2218	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2219	printf "\| $spalte1$spalte2 \| \n"
2220	fi
2221	if [[ $maximum_parallel_io_streams != $numprocs ]]
2222	then
2223	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2224	printf "\| $spalte1$spalte2 \| \n"
2225	fi
2226	if [[ $use_openmp = true ]]
2227	then
2228	spalte1="threads per task:"; spalte2="$threads_per_task"
2229	printf "\| $spalte1$spalte2 \| \n"
2230	fi
2231	printf "\| \| \n"
2232	if [[ $do_compile = true ]]
2233	then
2234	if [[ "$mopts" != "" ]]
2235	then
2236	spalte1="make options:"; spalte2=$mopts
2237	printf "\| $spalte1$spalte2 \| \n"
2238	zeile=$(echo "$mopts" \| cut -c41-)
2239	while [[ "$zeile" != "" ]]
2240	do
2241	spalte1=""
2242	spalte2=$zeile
2243	printf "\| $spalte1$spalte2 \| \n"
2244	zeile=$(echo "$zeile" \| cut -c41-)
2245	done
2246	fi
2247
2248	spalte1="cpp directives:"; spalte2=$cpp_options
2249	printf "\| $spalte1$spalte2 \| \n"
2250	zeile=$(echo "$cpp_options" \| cut -c41-)
2251	while [[ "$zeile" != "" ]]
2252	do
2253	spalte1=""
2254	spalte2=$zeile
2255	printf "\| $spalte1$spalte2 \| \n"
2256	zeile=$(echo "$zeile" \| cut -c41-)
2257	done
2258
2259	spalte1="compiler options:"; spalte2="$fopts"
2260	printf "\| $spalte1$spalte2 \| \n"
2261	zeile=$(echo "$fopts" \| cut -c41-)
2262	while [[ "$zeile" != "" ]]
2263	do
2264	spalte1=""
2265	spalte2=$zeile
2266	printf "\| $spalte1$spalte2 \| \n"
2267	zeile=$(echo "$zeile" \| cut -c41-)
2268	done
2269
2270	spalte1="linker options:"; spalte2=$lopts
2271	printf "\| $spalte1$spalte2 \| \n"
2272	zeile=$(echo "$lopts" \| cut -c41-)
2273	while [[ "$zeile" != "" ]]
2274	do
2275	spalte1=""
2276	spalte2=$zeile
2277	printf "\| $spalte1$spalte2 \| \n"
2278	zeile=$(echo "$zeile" \| cut -c41-)
2279	done
2280
2281	spalte1="modules to be load:"; spalte2=$modules
2282	printf "\| $spalte1$spalte2 \| \n"
2283	zeile=$(echo "$modules" \| cut -c41-)
2284	while [[ "$zeile" != "" ]]
2285	do
2286	spalte1=""
2287	spalte2=$zeile
2288	printf "\| $spalte1$spalte2 \| \n"
2289	zeile=$(echo "$zeile" \| cut -c41-)
2290	done
2291
2292	spalte1="main program":; spalte2=$mainprog
2293	printf "\| $spalte1$spalte2 \| \n"
2294	else
2295	spalte1=executable:; spalte2=$executable
2296	printf "\| $spalte1$spalte2 \| \n"
2297	fi
2298	printf "\| \| \n"
2299	spalte1="base name of files":; spalte2=$fname
2300	printf "\| $spalte1$spalte2 \| \n"
2301	if [[ $fname != $afname ]]
2302	then
2303	spalte1="base name of input files":; spalte2=$afname
2304	printf "\| $spalte1$spalte2 \| \n"
2305	fi
2306	spalte1="INPUT control list":; spalte2=$input_list
2307	printf "\| $spalte1$spalte2 \| \n"
2308	spalte1="OUTPUT control list":; spalte2=$output_list
2309	printf "\| $spalte1$spalte2 \| \n"
2310
2311	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2312	then
2313	spalte1="memory demand / PE":; spalte2="$memory MB"
2314	printf "\| $spalte1$spalte2 \| \n"
2315	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2316	printf "\| $spalte1$spalte2 \| \n"
2317	fi
2318
2319	if [[ $do_compile = true ]]
2320	then
2321	printf "\| \| \n"
2322	printf "\| Files to be compiled: \| \n"
2323	zeile=$source_list
2324	while [[ "$zeile" != "" ]]
2325	do
2326	spalte3=$zeile
2327	printf "\| $spalte3 \| \n"
2328	zeile=$(echo "$zeile" \| cut -c61-)
2329	done
2330	fi
2331	printf "#--------------------------------------------------------------#"
2332
2333
2334
2335	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2336	if [[ $do_trace = true ]]
2337	then
2338	(( i = 0 ))
2339	while (( i < iin ))
2340	do
2341	(( i = i + 1 ))
2342	if (( i == 1 ))
2343	then
2344	printf "\n\n >>> INPUT-file assignments:\n"
2345	fi
2346	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2347	done
2348	(( i = 0 ))
2349	while (( i < iout ))
2350	do
2351	(( i = i + 1 ))
2352	if (( i == 1 ))
2353	then
2354	printf "\n\n >>> OUTPUT-file assignments:\n"
2355	fi
2356	printf "\n ${localout[$i]} : ${pathout[$i]}"
2357	done
2358	(( i = 0 ))
2359	while (( i < iic ))
2360	do
2361	(( i = i + 1 ))
2362	if (( i == 1 ))
2363	then
2364	printf "\n\n >>> INPUT-commands:\n"
2365	fi
2366	printf "\n ${in_command[$i]}"
2367	done
2368	(( i = 0 ))
2369	while (( i < ioc ))
2370	do
2371	(( i = i + 1 ))
2372	if (( i == 1 ))
2373	then
2374	printf "\n\n >>> OUTPUT-commands:\n"
2375	fi
2376	printf "\n ${out_command[$i]}"
2377	done
2378	fi
2379
2380
2381	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2382	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2383	then
2384	antwort=dummy
2385	printf "\n\n"
2386	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2387	do
2388	printf " >>> everything o.k. (y/n) ? "
2389	read antwort
2390	done
2391	if [[ $antwort = n \|\| $antwort = N ]]
2392	then
2393	locat=user_abort; (( iec = 0 )); exit
2394	fi
2395	if [[ $do_batch = true ]]
2396	then
2397	printf " >>> batch-job will be created and submitted"
2398	else
2399	if [[ $local_compile = false ]]
2400	then
2401	printf " >>> MRUN will now continue to execute on this machine"
2402	else
2403	printf " >>> a test compilation will now be carried out on this machine"
2404	fi
2405	fi
2406	fi
2407
2408	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2409	skip_check=false
2410	if [[ $check_namelist_files == false \|\| $fromhost != $localhost \|\| $run_coupled_model == true \|\| $restart_run == true ]]
2411	then
2412	skip_check=true
2413	fi
2414	if [[ $skip_check == false ]]
2415	then
2416	if [[ $ocean_file_appendix == true ]]
2417	then
2418	d3par_string="d3o#"
2419	d3fpar_string="d3of"
2420	else
2421	d3par_string="d3#"
2422	d3fpar_string="d3f"
2423	fi
2424
2425	tmp_check=${working_directory}/tmp_check
2426
2427	# GET PARAMETER FILE SUFFIX (USUALLY "_P3D")
2428	line=""
2429	found=false
2430	grep "$d3par_string" $config_file \| grep "PARIN" > $tmp_check
2431	while read line1
2432	do
2433	line="$line1"
2434	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2435	then
2436	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING ENTFERNEN
2437	p3d_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2438	found=true
2439	fi
2440	done < $tmp_check
2441
2442	if [[ $found = false ]]
2443	then
2444	printf "\n +++ no PARIN list entry found for $d3par_string in the configuration file."
2445
2446	locat=check_namelist; exit
2447	fi
2448
2449	# GET RESTART PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2450	# NOT NECESSARILY REQUIRED
2451	line=""
2452	found=false
2453	grep "d3f" $config_file \| grep "PARIN" > $tmp_check
2454	while read line1
2455	do
2456	line="$line1"
2457	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2458	then
2459	p3df_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2460	found=true
2461	fi
2462	done < $tmp_check
2463
2464	if [[ $found = false ]]
2465	then
2466	printf "\n +++ no PARIN list entry found for d3f in the configuration file."
2467	fi
2468	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2469	# NOT NECESSARILY REQUIRED
2470	line=""
2471	found=false
2472	grep "d3f" $config_file \| grep "TOPOGRAPHY_DATA" > $tmp_check
2473	while read line1
2474	do
2475	line="$line1"
2476	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2477	then
2478	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2479	found=true
2480	fi
2481	done < $tmp_check
2482
2483	if [[ $found = false ]]
2484	then
2485	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2486	fi
2487
2488	rm -rf ${working_directory}/tmp_check
2489
2490	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2491	check_depository="${working_directory}/trunk/UTIL"
2492	check_sources="${working_directory}/tmp_check_namelist_files"
2493
2494	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2495	for item in $input_list
2496	do
2497	if [[ "$item" == "restart" \|\| "$item" == d3f \|\| "$item" == d3of ]]
2498	then
2499	check_restart=1
2500	else
2501	check_restart=0
2502	fi
2503	done
2504
2505	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2506	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ]]
2507	then
2508	printf "\n\n +++ ERROR: parameter file (${fname}${p3d_suffix}) not found."
2509	locat=check_namelist; exit
2510	fi
2511
2512	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2513	if [[ $check_restart == 1 ]]
2514	then
2515	if [[ ! -f $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ]]
2516	then
2517	printf "\n\n +++ WARNING: restart parameter file (${fname}${p3df_suffix}) is missing."
2518	check_restart=0
2519	answer=dummy
2520	printf "\n\n"
2521
2522	if [[ $silent == false ]]
2523	then
2524	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2525	do
2526	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2527	read answer
2528	done
2529	if [[ $answer = a \|\| $answer = A ]]
2530	then
2531	printf "\n +++ Aborting...."
2532	locat=normal; exit
2533	fi
2534	fi
2535	else
2536	check_restart=1
2537	fi
2538	fi
2539
2540	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2541	mkdir $check_sources
2542	cd $check_sources
2543
2544	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2545	if [[ -d $working_directory/USER_CODE/$fname ]]
2546	then
2547	printf "\n\n *** copying files from $check_depository"
2548	cp $check_depository/check_namelist_files.tar ./
2549
2550	printf "\n\n *** untar of makefile and source files in $check_sources"
2551	tar -xf check_namelist_files.tar > /dev/null 2>&1
2552
2553	printf "\n\n *** adding user code."
2554	cp $working_directory/USER_CODE/$fname/* ./
2555	touch check_namelist_files.f90
2556
2557	# GET COMPILER OPTIONS AND PERFORM MAKE
2558	printf "\n\n *** compiling code if necessary...\n"
2559	copts_check="-cpp -D_parallel -D__check"
2560	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2561
2562	# GET MAKE OUTPUT
2563	if [[ $? != 0 ]]
2564	then
2565	printf "\n +++ error during make."
2566	answer=dummy
2567	printf "\n\n"
2568	if [[ $silent == false ]]
2569	then
2570	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2571	do
2572	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2573	read answer
2574	done
2575	if [[ $answer = a \|\| $answer = A ]]
2576	then
2577	printf "\n +++ Aborting..."
2578	rm -rf $check_sources
2579	locat=normal; exit
2580	else
2581	skip_check=true
2582	fi
2583	else
2584	skip_check=true
2585	fi
2586	fi
2587	else
2588	cp $PALM_BIN/check_namelist_files.x ./
2589	fi
2590
2591	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3d_suffix} ./PARIN
2592	if [[ $check_restart == 1 ]]
2593	then
2594	cp $working_directory/JOBS/$fname/INPUT/${fname}${p3df_suffix} ./PARINF
2595	fi
2596
2597
2598	if [[ -f $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} && $skip_check == false ]]
2599	then
2600	printf "\n *** adding topography data"
2601	cp $working_directory/JOBS/$fname/INPUT/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2602
2603	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2604	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2605	# WHICH REQUIRE SUFFICIENT MEMORY
2606	ulimit -s unlimited
2607	fi
2608
2609	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2610	cat > ENVPAR << %%END%%
2611	&envpar run_identifier = '$fname', host = '$localhost',
2612	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2613	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2614	maximum_cpu_time_allowed = ${cpumax}.,
2615	revision = '$global_revision',
2616	local_dvrserver_running = $local_dvrserver_running /
2617
2618	%%END%%
2619
2620	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2621	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2622	printf "\n +++ WARNING: check_namelist_files.x not found."
2623	answer=dummy
2624	printf "\n\n"
2625
2626	if [[ $silent == false ]]
2627	then
2628	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2629	do
2630	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2631	read answer
2632	done
2633	if [[ $answer = a \|\| $answer = A ]]
2634	then
2635	printf "\n +++ Aborting..."
2636	rm -rf $check_sources
2637	locat=normal; exit
2638	else
2639	printf "\n *** Skipping parameter file check."
2640
2641	fi
2642	fi
2643
2644	elif [[ $skip_check == false ]]
2645	then
2646	# STARTING THE PARAMETER FILE CHECK
2647	printf "\n\n *** starting parameter file check..."
2648
2649	# CHECKING THE P3D FILE
2650	printf "\n\n (1) checking $fname$p3d_suffix"
2651	echo "$numprocs 0" > VARIN
2652	errors=`./check_namelist_files.x < VARIN 2>&1`
2653
2654	check_error=false
2655	if [[ "$errors" == "" ]]
2656	then
2657	printf " --> o.k."
2658	else
2659	printf " --> failed."
2660	check_error=true
2661	printf "\n\n $errors"
2662	fi
2663
2664	# CHECKING THE PD3F FILE IF NECESSARY
2665	if [[ $check_restart == 1 && $check_error == false ]]
2666	then
2667	printf "\n\n (2) checking $fname$p3df_suffix"
2668
2669	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2670	found=false
2671	cat PARINF\|while read line
2672	do
2673	line=$(echo $line\|sed 's/ //g')
2674	if [[ $line == "&inipar" ]]
2675	then
2676	start_search=true
2677	fi
2678
2679	if [[ $start_search == true ]]
2680	then
2681	if [[ $line == "initializing_actions='read_restart_data'" ]]
2682	then
2683	found=true
2684	break
2685	fi
2686	fi
2687
2688	if [[ $line == "/" ]]
2689	then
2690	start_search=false
2691	fi
2692
2693	done
2694
2695	if [[ $found = false ]]
2696	then
2697	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2698	printf "\n in &inipar list in $fname$p3df_suffix."
2699	rm -rf $check_sources
2700	locat=check_namelist; exit
2701	fi
2702
2703	echo "$numprocs 1" > VARIN
2704	errors=`./check_namelist_files.x < VARIN 2>&1`
2705
2706	if [[ "$errors" == "" ]]
2707	then
2708	printf " --> o.k."
2709	else
2710	printf " --> failed."
2711	check_error=true
2712	printf "\n\n $errors"
2713	fi
2714	fi
2715
2716	# REPORT ERRORS AND CONTINUE/EXIT
2717	if [[ $check_error == true ]]
2718	then
2719	printf "\n +++ errors found in the parameter file!\n"
2720	answer=dummy
2721	printf "\n\n"
2722
2723	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2724	do
2725	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2726	read answer
2727	done
2728
2729	if [[ $answer = a \|\| $answer = A ]]
2730	then
2731	printf "\n +++ Aborting..."
2732	rm -rf $check_sources
2733	locat=normal; exit
2734	fi
2735	else
2736	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2737	fi
2738	rm -rf $check_sources
2739	fi
2740	else
2741	printf "\n\n +++ skipping parameter file check\n"
2742	fi
2743
2744	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2745	rm -rf $check_sources
2746	cd $working_directory
2747
2748	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2749	# CHENDE AKTIONEN DURCHGEFUEHRT
2750	if [[ $do_batch = false ]]
2751	then
2752
2753
2754	# TEMPORAEREN KATALOG ERZEUGEN
2755	mkdir -p $TEMPDIR
2756	chmod go+rx $TEMPDIR
2757	tmpcreate=true
2758
2759	# set striping on lustre file system
2760	# if [[ $localhost = lcsgih ]]
2761	# then
2762	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2763	# lfs getstripe $TEMPDIR
2764	# fi
2765
2766
2767	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2768	# TEMPORAERES VERZEICHNIS KOPIEREN
2769	if [[ $do_compile = true ]]
2770	then
2771
2772	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2773	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2774	if [[ $localhost = nech ]]
2775	then
2776	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2777	if mkdir -p $TEMPDIR_COMPILE
2778	then
2779	printf "\n *** \"$TEMPDIR_COMPILE\" "
2780	printf "\n is generated as temporary directory for cross compiling\n"
2781	else
2782	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2783	printf "\n needed for cross compilation failed"
2784	locat=compile
2785	exit
2786	fi
2787	else
2788	TEMPDIR_COMPILE=$TEMPDIR
2789	fi
2790
2791
2792	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2793	line=""
2794	grep "%depository_path" $config_file > tmp_mrun
2795	while read line
2796	do
2797	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2798	then
2799	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2800	then
2801	global_depository_path=`echo $line \| cut -d" " -s -f2`
2802	fi
2803	fi
2804	done < tmp_mrun
2805
2806	line=""
2807	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2808	while read line
2809	do
2810	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2811	then
2812	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2813	then
2814	local_depository_path=`echo $line \| cut -d" " -s -f2`
2815	fi
2816	fi
2817	done < tmp_mrun
2818
2819	if [[ "$local_depository_path" = "" ]]
2820	then
2821	if [[ "$global_depository_path" != "" ]]
2822	then
2823	local_depository_path=$global_depository_path
2824	else
2825	printf "\n\n +++ no depository path found in configuration file"
2826	printf "\n for local host \"$localhost\" "
2827	printf "\n please set \"\%depository_path\" in configuration file\n"
2828	locat=config_file; exit
2829	fi
2830	fi
2831	eval local_depository_path=$local_depository_path
2832	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2833	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2834
2835
2836	basename=`print $mainprog \| cut -f1 -d"."`
2837	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2838	if [[ ! -f $make_depository ]]
2839	then
2840	printf "\n"
2841	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2842	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2843	else
2844	cp $make_depository $TEMPDIR_COMPILE
2845	cd $TEMPDIR_COMPILE
2846	tar -xf $make_depository > /dev/null 2>&1
2847	cd - > /dev/null
2848	fi
2849
2850	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2851
2852	else
2853
2854	cp $executable ${TEMPDIR}/a.out
2855
2856	fi
2857
2858
2859	# WECHSEL IN TEMPORAEREN KATALOG
2860	cd $TEMPDIR
2861	printf "\n *** changed to temporary directory: $TEMPDIR"
2862
2863
2864	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2865	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2866	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2867	# ERMITTELN
2868	(( i = 0 ))
2869	while (( i < iout ))
2870	do
2871	(( i = i + 1 ))
2872	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2873	then
2874	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2875	else
2876	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2877	fi
2878	done
2879
2880
2881	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2882	if [[ $do_compile = true ]]
2883	then
2884
2885
2886	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2887	printf "\n\n\n *** compilation starts \n$striche\n"
2888	printf " *** compilation with make using following options:\n"
2889	printf " make depository: $make_depository"
2890	if [[ "$mopts" != "" ]]
2891	then
2892	printf " make options: $mopts\n"
2893	fi
2894	printf " compilername: $compiler_name\n"
2895	printf " compiler options: $fopts\n"
2896	printf " preprocessor directives: $cpp_options \n"
2897	printf " linker options: $lopts \n"
2898	if [[ "$modules" != "" ]]
2899	then
2900	printf " modules to be load: $modules \n"
2901	fi
2902	printf " source code files: $source_list \n"
2903
2904	if [[ $localhost = nech ]]
2905	then
2906	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2907	cp $TEMPDIR_COMPILE/a.out .
2908	[[ $? != 0 ]] && compile_error=true
2909	rm -rf $TEMPDIR_COMPILE
2910	elif [[ $localhost = ibmh ]]
2911	then
2912	printf " compiler is called via ssh on \"plogin1\" \n"
2913	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2914	[[ ! -f a.out ]] && compile_error=true
2915	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2916	elif [[ $localhost = lcsgib ]]
2917	then
2918	printf " compiler is called via ssh on \"bicegate0\" \n"
2919	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2920	[[ ! -f a.out ]] && compile_error=true
2921	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2922	elif [[ $localhost = lcsgih ]]
2923	then
2924	printf " compiler is called via ssh on \"hicegate0\" \n"
2925	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2926	[[ ! -f a.out ]] && compile_error=true
2927	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2928	elif [[ $localhost = lcflow ]]
2929	then
2930	printf " compiler is called via ssh on \"flow\" \n"
2931	ssh flow02.hpc.uni-oldenburg.de -l $usern ". /cm/local/apps/environment-modules/3.2.6/Modules/3.2.6/init/bash; echo $MODULEPATH; echo $MODULESHOME; MODULEPATH=/cm/shared/modulefiles/; module load netcdf/intel/64/4.1.3 intel/ics/64/2011.0.013 intel/impi/64/4.0.1.007 hdf5/intel/64/1.8.7; cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2932	[[ ! -f a.out ]] && compile_error=true
2933	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2934	else
2935	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2936	[[ "$module_calls" != "" ]] && eval $module_calls
2937	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2938
2939	fi
2940
2941	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2942	then
2943	printf "\n +++ error occured while compiling or linking"
2944	locat=compile
2945
2946	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2947	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2948	# then
2949	exit
2950	# else
2951	# locat=normal
2952	# fi
2953	else
2954	printf "$striche\n *** compilation finished \n"
2955	fi
2956	fi
2957
2958
2959	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2960	if [[ $local_compile = true ]]
2961	then
2962	cd $HOME
2963	rm -rf $TEMPDIR
2964	locat=local_compile; exit
2965	fi
2966
2967
2968	# BEREITSTELLEN DER INPUT-DATEIEN
2969	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2970	(( i = 0 ))
2971	while (( i < iin ))
2972	do
2973	(( i = i + 1 ))
2974	if (( i == 1 ))
2975	then
2976	printf "\n\n *** providing INPUT-files:\n$striche"
2977	fi
2978
2979
2980	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2981	if [[ "${transin[$i]}" = unavailable ]]
2982	then
2983	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2984	then
2985	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2986	printf "\n is not available!"
2987	else
2988	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2989	printf "\n is not available!"
2990	fi
2991	continue
2992	fi
2993
2994	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2995	files_for_pes=false; datentyp=file
2996	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2997	then
2998	files_for_pes=true; datentyp=directory
2999	actionin[$i]=""
3000	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3001	then
3002	actionin[$i]=""
3003	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3004	then
3005	files_for_pes=true; datentyp=directory
3006	actionin[$i]="ar"
3007	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3008	then
3009	actionin[$i]="ar"
3010	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3011	then
3012	files_for_pes=true; datentyp=directory
3013	actionin[$i]="fl"
3014	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3015	then
3016	actionin[$i]="fl"
3017	fi
3018
3019	if [[ $files_for_pes = true ]]
3020	then
3021	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3022	else
3023	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3024	fi
3025
3026	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3027	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3028	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3029	# SERVER ZU HOLEN
3030	if [[ "${actionin[$i]}" = fl ]]
3031	then
3032	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3033	if [[ $files_for_pes = false ]]
3034	then
3035	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3036	then
3037	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3038	got_tmp[$i]=true
3039	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3040	then
3041	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3042	printf "\n *** trying to use backup copy in \"$WORK\" "
3043	cp $WORK/${frelin[$i]} ${localin[$i]}
3044	else
3045	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3046	printf "\n or \"$tmp_data_catalog\" does not exist!"
3047	printf "\n *** trying to get copy from archive"
3048	actionin[$i]=ar
3049	fi
3050	else
3051	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3052	then
3053	mkdir ${localin[$i]}
3054	cd $tmp_data_catalog/${frelin[$i]}
3055	for file in $(ls *)
3056	do
3057	ln $file $TEMPDIR/${localin[$i]}
3058	done
3059	cd $TEMPDIR
3060	got_tmp[$i]=true
3061	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3062	then
3063	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3064	printf "\n *** trying to use backup copy in \"$WORK\" "
3065	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3066	else
3067	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3068	printf "\n or \"$tmp_data_catalog\" does not exist!"
3069	printf "\n *** trying to get copy from archive"
3070	actionin[$i]=ar
3071	fi
3072	fi
3073	fi
3074
3075
3076	# DATEI LIEGT AUF ARCHIV-SERVER
3077	if [[ "${actionin[$i]}" = ar ]]
3078	then
3079
3080	if [[ $files_for_pes = false ]]
3081	then
3082	printf "\n file will be restored from archive-system ($archive_system)!"
3083	else
3084	printf "\n directory will be restored from archive-system ($archive_system)!"
3085	fi
3086
3087	file_restored=false
3088
3089	if [[ $archive_system = asterix ]]
3090	then
3091	do_stagein=true
3092	(( stagein_anz = 0 ))
3093	while [[ $do_stagein = true ]]
3094	do
3095	if [[ $files_for_pes = false ]]
3096	then
3097	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3098	else
3099	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3100	fi
3101	cat STAGEIN_OUTPUT
3102	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3103	then
3104	file_restored=true
3105	do_stagein=false
3106	else
3107	(( stagein_anz = stagein_anz + 1 ))
3108	if (( stagein_anz == 10 ))
3109	then
3110	printf "\n +++ stagein stoped after 10 tries"
3111	locat=stage
3112	exit
3113	fi
3114	printf "\n +++ restoring from archive failed, trying again:"
3115	sleep 900
3116	fi
3117	done
3118	elif [[ $archive_system = DMF ]]
3119	then
3120	if [[ $files_for_pes = false ]]
3121	then
3122	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3123	locat=DMF
3124	exit
3125	else
3126	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3127	cp -r $ARCHIVE/${frelin[$i]} $PWD
3128	file_restored=true
3129	fi
3130	elif [[ $archive_system = tivoli ]]
3131	then
3132	if [[ $files_for_pes = false ]]
3133	then
3134	if [[ $localhost = lcsgih ]]
3135	then
3136	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3137	else
3138	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3139	fi
3140	else
3141	(( inode = 0 ))
3142	while (( inode < nodes ))
3143	do
3144	if [[ $localhost = lcsgih ]]
3145	then
3146	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3147	else
3148	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3149	fi
3150	(( inode = inode + 1 ))
3151	done
3152	fi
3153	file_restored=true
3154	elif [[ $archive_system = ut ]]
3155	then
3156	if [[ $files_for_pes = false ]]
3157	then
3158	cp $UT/${frelin[$i]} .
3159	else
3160	(( inode = 0 ))
3161	while (( inode < nodes ))
3162	do
3163	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3164	(( inode = inode + 1 ))
3165	done
3166	fi
3167	file_restored=true
3168	else
3169	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3170	locat=rearchive
3171	exit
3172	fi
3173
3174	if [[ $file_restored = true ]]
3175	then
3176
3177	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3178	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3179	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3180	if [[ $files_for_pes = false ]]
3181	then
3182	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3183	else
3184	mkdir $tmp_data_catalog/${frelin[$i]}
3185	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3186	fi
3187	got_tmp[$i]=true
3188
3189	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3190	mv ${frelin[$i]} ${localin[$i]}
3191
3192	fi
3193	fi
3194
3195
3196	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3197	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3198	then
3199
3200	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3201	then
3202
3203	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3204	printf "\n file will be provided for $numprocs processors"
3205	mkdir ${localin[$i]}
3206	ival=$numprocs
3207	(( ii = 0 ))
3208	while (( ii <= ival-1 ))
3209	do
3210	if (( ii < 10 ))
3211	then
3212	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3213	elif (( ii < 100 ))
3214	then
3215	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3216	elif (( ii < 1000 ))
3217	then
3218	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3219	else
3220	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3221	fi
3222	(( ii = ii + 1 ))
3223	done
3224
3225	else
3226
3227	if [[ $files_for_pes = true ]]
3228	then
3229
3230	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3231	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3232	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3233	# PER MOVE UMBENANNT WERDEN
3234	printf "\n providing $numprocs files for the respective processors"
3235	mkdir ${localin[$i]}
3236	if [[ $link_local_input = true ]]
3237	then
3238	printf " using ln -f\n"
3239	cd ${absnamein[$i]}
3240	for file in $(ls *)
3241	do
3242	ln -f $file ${localin[$i]}
3243	done
3244	cd $TEMPDIR
3245	fi
3246	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3247	if [[ ! -f "${localin[$i]}/_0000" ]]
3248	then
3249	if [[ $link_local_input = true ]]
3250	then
3251	printf " ln failed for .../_0000, using cp...\n"
3252	fi
3253	cp -r ${absnamein[$i]}/* ${localin[$i]}
3254	fi
3255
3256	else
3257	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3258	if [[ $link_local_input = true ]]
3259	then
3260	printf " using ln -f\n"
3261	ln -f ${absnamein[$i]} ${localin[$i]}
3262	fi
3263	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3264	if [[ ! -f "${localin[$i]}" ]]
3265	then
3266	if [[ $link_local_input = true ]]
3267	then
3268	printf " ln failed, using cp...\n"
3269	fi
3270	cp ${absnamein[$i]} ${localin[$i]}
3271	fi
3272	fi
3273	fi
3274	fi
3275
3276	done
3277	if (( i != 0 ))
3278	then
3279	printf "\n$striche\n *** all INPUT-files provided \n"
3280	fi
3281
3282
3283	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3284	(( i = 0 ))
3285	while (( i < iic ))
3286	do
3287	(( i = i + 1 ))
3288	if (( i == 1 ))
3289	then
3290	printf "\n\n *** execution of INPUT-commands:\n$striche"
3291	fi
3292	printf "\n >>> ${in_command[$i]}"
3293	eval ${in_command[$i]}
3294	if (( i == iic ))
3295	then
3296	printf "\n$striche\n"
3297	fi
3298	done
3299
3300
3301	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3302	cpurest=${cpumax}.
3303
3304
3305	# START DVR STREAMING SERVER
3306	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3307	then
3308	if [[ "$dvr_server" != "" ]]
3309	then
3310
3311	printf "\n\n *** preparing the dvr streaming server configuration file"
3312
3313	# Check, if a dvr server is already running
3314	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3315	if [[ "$running_dvrserver_id" != "" ]]
3316	then
3317
3318	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3319	printf "\n This server is used instead starting a new one!"
3320	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3321
3322	else
3323
3324	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3325	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3326	then
3327	cp ${PALM_BIN}/.dvrserver.config .
3328
3329	# Entering the BASEDIR, UID and GID into this file
3330	user_id=`id -u`
3331	group_id=`id -g`
3332	# & is needed as seperator, because TEMPDIR contains /
3333	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3334	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3335	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3336	mv .dvrserver.3 .dvrserver.config
3337	rm .dvrserver.1 .dvrserver.2
3338
3339	# Start dvr server in background, get his id and print on terminal
3340	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3341	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3342	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3343	local_dvrserver_running=.TRUE.
3344	else
3345	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3346	printf "\n \"$PALM_BIN\" "
3347	locat=dvr
3348	exit
3349	fi
3350
3351	fi
3352
3353	else
3354	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3355	fi
3356	fi
3357
3358
3359	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3360	# LESEN VON PALM)
3361	cat > ENVPAR << %%END%%
3362	&envpar run_identifier = '$fname', host = '$localhost',
3363	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3364	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3365	maximum_cpu_time_allowed = ${cpumax}.,
3366	revision = '$global_revision',
3367	local_dvrserver_running = $local_dvrserver_running /
3368
3369	%%END%%
3370
3371
3372	# PROGRAMMSTART
3373	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3374	PATH=$PATH:$TEMPDIR
3375
3376	# MPI debug option (argument checking, slows down execution due to increased latency)
3377	if [[ "$mpi_debug" = true ]]
3378	then
3379	export MPI_CHECK_ARGS=1
3380	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3381	fi
3382
3383	if [[ "$totalview" = true ]]
3384	then
3385	printf "\n *** totalview debugger will be used"
3386	tv_opt="-tv"
3387	else
3388	tv_opt=""
3389	fi
3390
3391	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3392	then
3393	if [[ "$ENVIRONMENT" = BATCH ]]
3394	then
3395	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3396	then
3397	printf "\n +++ debug is allowed in interactive mode only"
3398	locat=debug
3399	exit
3400	fi
3401	fi
3402	if [[ $localhost = decalpha ]]
3403	then
3404	dxladebug a.out
3405	elif [[ $localhost = ibmh ]]
3406	then
3407
3408	# SETUP THE IBM MPI ENVIRONMENT
3409	export MP_SHARED_MEMORY=yes
3410	export AIXTHREADS_SCOPE=S
3411	export OMP_NUM_THREADS=$threads_per_task
3412	export AUTHSTATE=files
3413	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3414
3415	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3416	export MP_ADAPTER_USE=shared
3417	export MP_CPU_USE=multiple
3418	export MP_TIMEOUT=1200
3419
3420	unset MP_TASK_AFFINITY
3421
3422	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3423	#(( ii = 1 ))
3424	#while (( ii <= $numprocs ))
3425	#do
3426	# echo $localhost_realname >> hostfile
3427	# (( ii = ii + 1 ))
3428	#done
3429	#export MP_HOSTFILE=hostfile
3430
3431	if [[ "$LOADLBATCH" = yes ]]
3432	then
3433	totalview poe a.out $ROPTS
3434	else
3435	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3436	export TVDSVRLAUNCHCMD=ssh
3437	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3438	fi
3439	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3440	then
3441	# CURRENTLY NO DEBUGGER ON LCSGI
3442	if [[ $run_coupled_model = true ]]
3443	then
3444	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3445	locat=debug
3446	exit
3447	else
3448	echo "no_coupling" > runfile_atmos
3449	fi
3450	(( ii = $numprocs / $threads_per_task ))
3451	export OMP_NUM_THREADS=$threads_per_task
3452	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3453	if [[ $threads_per_task != 1 ]]
3454	then
3455	printf "\n threads per task: $threads_per_task"
3456	fi
3457	printf "\n\n"
3458	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3459	then
3460	# export MPI_LAUNCH_TIMEOUT=360
3461	if [[ "$totalview" = true ]]
3462	then
3463	printf "\n running totalview debugger"
3464	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3465	else
3466	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3467	fi
3468	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3469	then
3470	# ulimit -s 300000 # A too large stack size causes problems
3471	# export MV2_NUM_PORTS=2
3472	# export MV2_CPU_MAPPING=0:1:2:3
3473	if [[ "$totalview" = true ]]
3474	then
3475	printf "\n running totalview debugger"
3476	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3477	else
3478	mpiexec ./a.out $ROPTS < runfile_atmos
3479	fi
3480	fi
3481	else
3482	printf "\n +++ no debug available on \"$localhost\" "
3483	printf "\n or not implemented in mrun so far"
3484	locat=debug
3485	exit
3486	fi
3487
3488	# end debug mode
3489	else
3490
3491	# normal execution
3492	if [[ -n $numprocs ]]
3493	then
3494	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3495	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3496	then
3497	# SETUP THE IBM MPI ENVIRONMENT
3498	if [[ $host != ibmh && $host != ibmkisti ]]
3499	then
3500	export MP_SHARED_MEMORY=yes
3501	export AIXTHREAD_SCOPE=S
3502	export OMP_NUM_THREADS=$threads_per_task
3503	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3504	export AUTHSTATE=files
3505	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3506	# export MP_PRINTENV=yes
3507
3508	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3509	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3510	export MP_WAIT_MODE=poll
3511	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3512	fi
3513
3514	if [[ $host = ibmkisti ]]
3515	then
3516	export LANG=en_US
3517	export MP_SHARED_MEMORY=yes
3518	if [[ $threads_per_task = 1 ]]
3519	then
3520	export MP_SINGLE_THREAD=yes
3521	export MEMORY_AFFINITY=MCM
3522	else
3523	export OMP_NUM_THREADS=$threads_per_task
3524	fi
3525	fi
3526
3527	if [[ "$LOADLBATCH" = yes ]]
3528	then
3529	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3530	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3531	then
3532	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3533	else
3534	if [[ $run_coupled_model = false ]]
3535	then
3536	if [[ "$ocean_file_appendix" = true ]]
3537	then
3538	echo "precursor_ocean" > runfile_atmos
3539	else
3540	echo "precursor_atmos" > runfile_atmos
3541	fi
3542	else
3543	(( iia = $numprocs_atmos / $threads_per_task ))
3544	(( iio = $numprocs_ocean / $threads_per_task ))
3545	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3546	printf "\n using $coupled_mode coupling"
3547	printf "\n\n"
3548	echo "coupled_run $iia $iio" > runfile_atmos
3549	fi
3550	poe ./a.out $ROPTS < runfile_atmos
3551	fi
3552	else
3553	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3554	then
3555	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3556	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3557	then
3558	if [[ -f $hostfile ]]
3559	then
3560	cp $hostfile hostfile
3561	else
3562	(( ii = 1 ))
3563	while (( ii <= $numprocs ))
3564	do
3565	echo $localhost_realname >> hostfile
3566	(( ii = ii + 1 ))
3567	done
3568	fi
3569	export MP_HOSTFILE=hostfile
3570	if [[ $run_coupled_model = false ]]
3571	then
3572	if [[ "$ocean_file_appendix" = true ]]
3573	then
3574	echo "precursor_ocean" > runfile_atmos
3575	else
3576	echo "precursor_atmos" > runfile_atmos
3577	fi
3578	else
3579	(( iia = $numprocs_atmos / $threads_per_task ))
3580	(( iio = $numprocs_ocean / $threads_per_task ))
3581	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3582	printf "\n using $coupled_mode coupling"
3583	printf "\n\n"
3584	echo "coupled_run $iia $iio" > runfile_atmos
3585	fi
3586	if [[ $localhost = ibmy ]]
3587	then
3588	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3589	else
3590	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3591	fi
3592
3593	else
3594	if [[ "$host_file" = "" ]]
3595	then
3596	printf "\n +++ no hostfile given in configuration file"
3597	locat=config_file
3598	exit
3599	else
3600	eval host_file=$host_file
3601	fi
3602	export MP_HOSTFILE=$host_file
3603	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3604	fi
3605	fi
3606	elif [[ $host = nech \|\| $host = necriam ]]
3607	then
3608	(( ii = nodes ))
3609	if [[ $ii = 1 ]]
3610	then
3611	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3612	export MPIPROGINF=YES
3613	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3614	echo "*** execution on single node with mpirun"
3615	mpirun -np $numprocs ./a.out $ROPTS
3616	else
3617	(( i = 0 ))
3618	while (( i < ii ))
3619	do
3620	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3621	(( i = i + 1 ))
3622	done
3623
3624	echo "#!/bin/sh" > mpi_exec_shell
3625	echo " " >> mpi_exec_shell
3626	echo "set -u" >> mpi_exec_shell
3627	echo "F_ERRCNT=0" >> mpi_exec_shell
3628	echo "MPIPROGINV=YES" >> mpi_exec_shell
3629	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3630	echo "cpurest=$cpurest" >> mpi_exec_shell
3631	echo "fname=$fname" >> mpi_exec_shell
3632	echo "localhost=$localhost" >> mpi_exec_shell
3633	echo "return_addres=$return_addres" >> mpi_exec_shell
3634	echo "return_username=$return_username" >> mpi_exec_shell
3635	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3636	echo "write_binary=$write_binary" >> mpi_exec_shell
3637	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3638	echo " " >> mpi_exec_shell
3639	echo "export F_ERRCNT" >> mpi_exec_shell
3640	echo "export MPIPROGINV" >> mpi_exec_shell
3641	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3642	echo "export cpurest" >> mpi_exec_shell
3643	echo "export fname" >> mpi_exec_shell
3644	echo "export localhost" >> mpi_exec_shell
3645	echo "export return_addres" >> mpi_exec_shell
3646	echo "export return_username" >> mpi_exec_shell
3647	echo "export tasks_per_node" >> mpi_exec_shell
3648	echo "export write_binary" >> mpi_exec_shell
3649	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3650	echo " " >> mpi_exec_shell
3651	echo "exec ./a.out" >> mpi_exec_shell
3652
3653	chmod u+x mpi_exec_shell
3654	export MPIPROGINF=YES
3655	mpirun -f multinode_config &
3656	wait
3657
3658	fi
3659	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3660	then
3661
3662	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3663	# DOES NOT EXIST
3664	if [[ $host != lcsgih && $host != lcsgib ]]
3665	then
3666	if [[ -f $hostfile ]]
3667	then
3668	cp $hostfile hostfile
3669	(( ii = $numprocs / $threads_per_task ))
3670	else
3671	(( ii = 1 ))
3672	while (( ii <= $numprocs / $threads_per_task ))
3673	do
3674	echo $localhost_realname >> hostfile
3675	(( ii = ii + 1 ))
3676	done
3677	fi
3678	eval zeile=\"`head -n $ii hostfile`\"
3679	printf "\n *** running on: $zeile"
3680	fi
3681
3682	(( ii = $numprocs / $threads_per_task ))
3683	export OMP_NUM_THREADS=$threads_per_task
3684	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3685	if [[ $threads_per_task != 1 ]]
3686	then
3687	# increase stack size to unlimited, because large runs
3688	# may abort otherwise
3689	ulimit -Ss unlimited
3690	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3691	fi
3692	if [[ $run_coupled_model = false ]]
3693	then
3694	if [[ "$ocean_file_appendix" = true ]]
3695	then
3696	echo "precursor_ocean" > runfile_atmos
3697	else
3698	echo "precursor_atmos" > runfile_atmos
3699	fi
3700	printf "\n\n"
3701	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3702	then
3703	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3704	then
3705	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3706	# export MPI_DSM_DISTRIBUTE=1
3707	# MPI_DSM_CPULIST: pin MPI processes to cores
3708	if [[ $use_openmp = false ]]
3709	then
3710	if [[ "$sgi_feature" = ice2 ]]
3711	then
3712	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3713	else
3714	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3715	fi
3716	else
3717	unset MPI_DSM_CPULIST
3718	fi
3719	# MPI_IB_RAILS: use both IB rails on ICE2
3720	export MPI_BUFS_PER_HOST=512
3721	export MPI_IB_RAILS=2
3722	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3723	export MPI_CONNECTIONS_THRESHOLD=8192
3724	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3725	export MPI_TYPE_DEPTH=20
3726	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3727	export MPI_GROUP_MAX=64
3728	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3729	if [[ $use_openmp = true ]]
3730	then
3731	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3732	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3733	else
3734	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3735	fi
3736
3737	# next is test for openmp usage
3738	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3739	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3740	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3741	then
3742	export MV2_NUM_PORTS=2
3743	# The default setting of MV2_CPU_MAPPING gives best results
3744	# export MV2_ENABLE_AFFINITY=1
3745	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3746	# if [[ "$sgi_feature" = ice2 ]]
3747	# then
3748	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3749	# else
3750	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3751	# fi
3752	if [[ $use_openmp = true ]]
3753	then
3754	unset MV2_CPU_MAPPING
3755	export MV2_ENABLE_AFFINITY=0
3756	fi
3757	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3758	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3759	if [[ $use_openmp = true ]]
3760	then
3761	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3762	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3763	else
3764	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3765	fi
3766	elif [[ "$mpilib" = impi ]]
3767	then
3768	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3769	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3770	fi
3771	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3772	then
3773	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3774	elif [[ $host = lcflow ]]
3775	then
3776	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3777	else
3778	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3779	fi
3780	else
3781
3782	# currently there is no full MPI-2 support on ICE and XT4
3783	(( iia = $numprocs_atmos / $threads_per_task ))
3784	(( iio = $numprocs_ocean / $threads_per_task ))
3785	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3786	printf "\n using $coupled_mode coupling"
3787	printf "\n\n"
3788
3789	if [[ $coupled_mode = "mpi2" ]]
3790	then
3791	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3792	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3793	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3794	then
3795
3796	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3797	then
3798	# export MPI_LAUNCH_TIMEOUT=360
3799	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3800	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3801	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3802	then
3803	# ulimit -s 300000 # A too large stack size causes problems
3804	# export MV2_NUM_PORTS=2
3805	# export MV2_CPU_MAPPING=0:1:2:3
3806	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3807	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3808	fi
3809
3810	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3811	then
3812
3813	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3814	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3815
3816	else
3817	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3818	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3819	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3820	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3821	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3822	fi
3823	wait
3824
3825	else
3826
3827	echo "coupled_run $iia $iio" > runfile_atmos
3828	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3829	then
3830
3831	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3832	then
3833	# export MPI_LAUNCH_TIMEOUT=360
3834	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3835	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3836	then
3837	# ulimit -s 300000 # A too large stack size causes problems
3838	# export MV2_NUM_PORTS=2
3839	# export MV2_CPU_MAPPING=0:1:2:3
3840	mpiexec ./a.out $ROPTS < runfile_atmos
3841	fi
3842
3843	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3844	then
3845
3846	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3847
3848	elif [[ $host = lck \|\| $host = lckordi ]]
3849	then
3850	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3851	fi
3852	wait
3853	fi
3854
3855	fi
3856	elif [[ $host = decalpha ]]
3857	then
3858	dmpirun -np $numprocs a.out $ROPTS
3859	elif [[ $host = lckyoto ]]
3860	then
3861	set -xv
3862	export P4_RSHCOMMAND=plesh
3863	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3864	if [[ "$ENVIRONMENT" = BATCH ]]
3865	then
3866	if [[ "$cond2" = fujitsu ]]
3867	then
3868	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3869	elif [[ "cond2" = pgi ]]
3870	then
3871	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3872	else
3873	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3874	fi
3875	else
3876	if [[ "$cond2" = "" ]]
3877	then
3878	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3879	else
3880	mpirun -np $numprocs ./a.out $ROPTS
3881	fi
3882	fi
3883	set +xv
3884	elif [[ $host = lctit ]]
3885	then
3886	export OMP_NUM_THREADS=$threads_per_task
3887	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3888	if [[ "$threads_per_task" != 1 ]]
3889	then
3890	export MV2_ENABLE_AFFINITY=0
3891	fi
3892	echo "----- PBS_NODEFILE content:"
3893	cat $PBS_NODEFILE
3894	echo "-----"
3895	(( ii = $numprocs / $threads_per_task ))
3896	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3897	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3898	else
3899	mpprun -n $numprocs a.out $ROPTS
3900	fi
3901	[[ $? != 0 ]] && execution_error=true
3902
3903
3904	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3905	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3906	then
3907	apprentice
3908	fi
3909	else
3910	a.out $ROPTS
3911	fi
3912	fi
3913	if [[ $? != 0 \|\| $execution_error = true ]]
3914	then
3915
3916	# ABBRUCH BEI LAUFZEITFEHLER
3917	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3918	printf "\n +++ runtime error occured"
3919	locat=execution
3920	exit
3921	else
3922	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3923	printf "\n$striche\n *** execution finished \n"
3924
3925	# Stop the dvr streaming server and process the dvr output in order
3926	# to create dvrs- and html-files containing all streams
3927	if [[ "$dvrserver_id" != "" ]]
3928	then
3929	kill $dvrserver_id
3930	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3931
3932	# If there is a directory, data have been output by the
3933	# streaming server. Otherwise, user has chosen dvrp_output=local
3934	if [[ -d DATA_DVR ]]
3935	then
3936
3937	# Add the current dvr configuration file to the dvr output
3938	# directory
3939	cp .dvrserver.config DATA_DVR
3940
3941	# Process the dvr output (option -s for also generating
3942	# sequence mode data)
3943	process_dvr_output -d DATA_DVR -f $fname -s
3944
3945	else
3946
3947	# Process the local output
3948	process_dvr_output -l -d DATA_DVR -f $fname
3949
3950	fi
3951
3952	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3953	then
3954
3955	# Process dvr output generated in local mode (dvrp_output=local)
3956	process_dvr_output -l -d DATA_DVR -f $fname
3957
3958	fi
3959	fi
3960
3961
3962
3963	# Call of combine_plot_fields in order to merge single files written
3964	# by each PE into one file.
3965	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3966	then
3967	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3968	printf "\n 2d- and/or 3d-data may be incomplete!"
3969	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3970	else
3971	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3972	combine_plot_fields${block}.x
3973	fi
3974
3975
3976
3977	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3978	(( i = 0 ))
3979	while (( i < ioc ))
3980	do
3981	(( i = i + 1 ))
3982	if (( i == 1 ))
3983	then
3984	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3985	fi
3986	printf "\n >>> ${out_command[$i]}"
3987	eval ${out_command[$i]}
3988	if (( i == ioc ))
3989	then
3990	printf "\n$striche\n"
3991	fi
3992	done
3993
3994
3995	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3996	if [[ $do_trace = true ]]
3997	then
3998	printf "\n\n"
3999	ls -al
4000	fi
4001
4002
4003
4004	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4005	(( i = 0 ))
4006	while (( i < iout ))
4007	do
4008	(( i = i + 1 ))
4009	if (( i == 1 ))
4010	then
4011	printf "\n\n *** saving OUTPUT-files:\n$striche"
4012	fi
4013
4014	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4015	files_for_pes=false; filetyp=file
4016	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4017	then
4018	files_for_pes=true; filetyp=directory
4019	actionout[$i]=""
4020	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4021	then
4022	actionout[$i]=""
4023	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4024	then
4025	files_for_pes=true; filetyp=directory
4026	actionout[$i]="ar"
4027	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4028	then
4029	actionout[$i]="ar"
4030	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4031	then
4032	files_for_pes=true; filetyp=directory
4033	actionout[$i]="fl"
4034	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4035	then
4036	actionout[$i]="fl"
4037	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4038	then
4039	files_for_pes=true; filetyp=directory
4040	actionout[$i]="tr"
4041	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4042	then
4043	actionout[$i]="tr"
4044	fi
4045
4046	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4047	then
4048	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4049	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4050	then
4051	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4052	else
4053
4054
4055	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4056	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4057	# REMOTE-RECHNUNGEN
4058	if [[ "${actionout[$i]}" = tr ]]
4059	then
4060	if [[ $localhost != $fromhost ]]
4061	then
4062	if [[ $files_for_pes = false ]]
4063	then
4064	cps=""
4065	cst=""
4066	else
4067	cps=-c
4068	cst="/"
4069	fi
4070	if [[ $localhost = nech ]]
4071	then
4072
4073	# TRANSFER IN EIGENSTAENDIGEM JOB
4074	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4075	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4076	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4077	if [[ $files_for_pes = false ]]
4078	then
4079	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4080	else
4081	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4082	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4083	fi
4084
4085	echo "set -x" > transfer_${localout[$i]}
4086	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4087
4088	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4089	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4090	printf "\n or higher cycle\n"
4091	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4092
4093	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4094
4095	if [[ $localhost = nech ]]
4096	then
4097	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4098	else
4099	if [[ "$LOGNAME" = b323013 ]]
4100	then
4101	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4102	else
4103	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4104	fi
4105	fi
4106
4107	else
4108
4109	# TRANSFER INNERHALB DIESES JOBS
4110	transfer_failed=false
4111	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4112	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4113	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4114	[[ $? != 0 ]] && transfer_failed=true
4115
4116	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4117	# LOKALER MASCHINE ANLEGEN
4118	if [[ $transfer_failed = true ]]
4119	then
4120	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4121	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4122
4123	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4124	# ANLEGEN.
4125	eval local_catalog=${pathout[$i]}
4126	if [[ ! -d $local_catalog ]]
4127	then
4128	printf " *** local directory does not exist. Trying to create:\n"
4129	printf " $local_catalog \n"
4130	mkdir -p $local_catalog
4131	fi
4132	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4133	transfer_problems=true
4134	fi
4135	fi
4136	else
4137
4138	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4139	actionout[$i]=""
4140	fi
4141	fi
4142
4143
4144	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4145	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4146	# REMOTE-RECHNUNGEN
4147	if [[ "${actionout[$i]}" = tra ]]
4148	then
4149	if [[ $localhost != $fromhost ]]
4150	then
4151	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4152	then
4153
4154	# TRANSFER IN EIGENSTAENDIGEM JOB
4155	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4156	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4157	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4158	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4159
4160	echo "set -x" > transfer_${localout[$i]}
4161	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4162
4163	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4164	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4165	printf "\n or higher cycle\n"
4166	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4167
4168	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4169
4170	if [[ $localhost = nech ]]
4171	then
4172	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4173	else
4174	if [[ $LOGNAME = b323013 ]]
4175	then
4176	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4177	else
4178	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4179	fi
4180	fi
4181
4182	else
4183
4184	# TRANSFER INNERHALB DIESES JOBS
4185	transfer_failed=false
4186	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4187	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4188	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4189	[[ $? != 0 ]] && transfer_failed=true
4190
4191	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4192	# LOKALER MASCHINE ANLEGEN
4193	if [[ $transfer_failed = true ]]
4194	then
4195	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4196	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4197
4198	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4199	# ANLEGEN
4200	eval local_catalog=${pathout[$i]}
4201	if [[ ! -d $local_catalog ]]
4202	then
4203	printf " *** local directory does not exist. Trying to create:\n"
4204	printf " $local_catalog \n"
4205	mkdir -p $local_catalog
4206	fi
4207
4208	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4209	transfer_problems=true
4210	fi
4211	fi
4212	else
4213
4214	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4215	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4216	actionout[$i]=a
4217	fi
4218	fi
4219
4220
4221	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4222	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4223	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4224	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4225	if [[ "${actionout[$i]}" = fl ]]
4226	then
4227	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4228	chmod g+rx $tmp_data_catalog
4229	if [[ $files_for_pes = false ]]
4230	then
4231	printf "\n >>> OUTPUT: ${localout[$i]} to"
4232	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4233	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4234	else
4235	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4236	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4237	mkdir $tmp_data_catalog/${frelout[$i]}
4238	cd ${localout[$i]}
4239	for file in $(ls *)
4240	do
4241	ln -f $file $tmp_data_catalog/${frelout[$i]}
4242	done
4243	cd $TEMPDIR
4244	fi
4245
4246
4247	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4248	if [[ $store_on_archive_system = true ]]
4249	then
4250
4251	if [[ $archive_system = asterix ]]
4252	then
4253	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4254	if [[ $files_for_pes = false ]]
4255	then
4256	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4257	else
4258	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4259	fi
4260	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4261	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4262	echo "then" >> archive_${frelout[$i]}
4263	echo " do_stageout=false" >> archive_${frelout[$i]}
4264	echo "else" >> archive_${frelout[$i]}
4265	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4266	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4267	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4268	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4269	if [[ $files_for_pes = false ]]
4270	then
4271	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4272	else
4273	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4274	fi
4275	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4276	echo "fi" >> archive_${frelout[$i]}
4277	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4278	elif [[ $archive_system = DMF ]]
4279	then
4280	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4281	if [[ $files_for_pes = false ]]
4282	then
4283	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4284	locat=DMF
4285	exit
4286	else
4287	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4288	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4289	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4290	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4291	fi
4292	elif [[ $archive_system = tivoli ]]
4293	then
4294	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4295	if [[ $files_for_pes = false ]]
4296	then
4297	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4298	echo "set -x" >> archive_${frelout[$i]}
4299	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4300	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4301	else
4302
4303	echo "set -x" >> archive_${frelout[$i]}
4304	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4305	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4306	cd $tmp_data_catalog
4307	all_files=`ls -1 ${frelout[$i]}/*`
4308	cd - > /dev/null
4309	(( inode = 0 ))
4310	(( tp1 = tasks_per_node + 1 ))
4311	while (( inode < nodes ))
4312	do
4313	# echo "*** all_files = \"$all_files\" "
4314	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4315	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4316	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4317	# echo "*** files = \"$files\" "
4318	# echo "*** all_files = \"$all_files\" "
4319	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4320	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4321	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4322	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4323	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4324	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4325	(( inode = inode + 1 ))
4326	done
4327	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4328	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4329	fi
4330	elif [[ $archive_system = ut ]]
4331	then
4332	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4333	if [[ $files_for_pes = false ]]
4334	then
4335	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4336	echo "set -x" >> archive_${frelout[$i]}
4337	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4338	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4339	else
4340
4341	echo "set -x" >> archive_${frelout[$i]}
4342	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4343	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4344	cd $tmp_data_catalog
4345	all_files=`ls -1 ${frelout[$i]}/*`
4346	cd - > /dev/null
4347	(( inode = 0 ))
4348	(( tp1 = tasks_per_node + 1 ))
4349	while (( inode < nodes ))
4350	do
4351	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4352	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4353	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4354	(( inode = inode + 1 ))
4355	done
4356	fi
4357	elif [[ $archive_system = none ]]
4358	then
4359	printf " +++ archiving on $localhost not available!\n"
4360	fi
4361
4362	if [[ $archive_system != none ]]
4363	then
4364	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4365	then
4366	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4367	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4368	elif [[ $localhost = nech ]]
4369	then
4370	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4371	fi
4372	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4373	fi
4374	else
4375	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4376	fi
4377
4378
4379	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4380	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4381	if [[ $files_for_pes = false ]]
4382	then
4383	cat /dev/null > ${pathout[$i]}
4384	else
4385	mkdir -p ${pathout[$i]}
4386	fi
4387
4388	fi
4389
4390
4391	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4392	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4393	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4394	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4395	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4396	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4397	if [[ "${actionout[$i]}" = ar ]]
4398	then
4399	if [[ $files_for_pes = false ]]
4400	then
4401	printf "\n >>> OUTPUT: ${localout[$i]} to"
4402	printf "\n ${pathout[$i]}"
4403	printf "\n File will be copied to archive-system ($archive_system) !\n"
4404	else
4405	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4406	printf "\n ${pathout[$i]}"
4407	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4408	fi
4409	mv ${localout[$i]} ${frelout[$i]}
4410
4411	file_saved=false
4412
4413	if [[ $archive_system = asterix ]]
4414	then
4415	do_stageout=true
4416	(( stageout_anz = 0 ))
4417	while [[ $do_stageout = true ]]
4418	do
4419	if [[ $files_for_pes = false ]]
4420	then
4421	stageout ${frelout[$i]} > STAGE_OUTPUT
4422	else
4423	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4424	fi
4425	cat STAGE_OUTPUT
4426	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4427	then
4428	file_saved=true
4429	do_stageout=false
4430	else
4431	if [[ $files_for_pes = false ]]
4432	then
4433	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4434	else
4435	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4436	fi
4437	(( stageout_anz = stageout_anz + 1 ))
4438	if (( stageout_anz == 10 ))
4439	then
4440	printf "\n +++ stoped after 10 unsuccessful tries!"
4441	archive_save=false
4442	do_stageout=false
4443	else
4444	printf "\n *** new try to store on archive after 15 min:"
4445	sleep 900
4446	fi
4447	fi
4448	done
4449	elif [[ $archive_system = DMF ]]
4450	then
4451	if [[ $files_for_pes = false ]]
4452	then
4453	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4454	locat=DMF
4455	exit
4456	else
4457	rm -rf $ARCHIVE/${frelout[$i]}
4458	cp -r ${frelout[$i]} $ARCHIVE
4459	fi
4460	file_saved=true
4461	elif [[ $archive_system = tivoli ]]
4462	then
4463	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4464	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4465	# GELEGT WERDEN
4466	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4467	chmod g+rx $tmp_data_catalog
4468	if [[ $files_for_pes = false ]]
4469	then
4470	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4471	else
4472	mkdir $tmp_data_catalog/${frelout[$i]}
4473	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4474	fi
4475
4476	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4477	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4478	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4479	if [[ $files_for_pes = false ]]
4480	then
4481	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4482	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4483	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4484	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4485	else
4486	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4487	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4488	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4489	fi
4490
4491	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4492	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4493	file_saved=true
4494
4495	elif [[ $archive_system = ut ]]
4496	then
4497	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4498	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4499	# GELEGT WERDEN
4500	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4501	chmod g+rx $tmp_data_catalog
4502	if [[ $files_for_pes = false ]]
4503	then
4504	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4505	else
4506	mkdir $tmp_data_catalog/${frelout[$i]}
4507	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4508	fi
4509
4510	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4511	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4512	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4513	if [[ $files_for_pes = false ]]
4514	then
4515	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4516	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4517	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4518	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4519	else
4520	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4521	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4522	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4523	fi
4524
4525	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4526	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4527	file_saved=true
4528
4529	else
4530	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4531	archive_save=false
4532	fi
4533	if [[ $file_saved = true ]]
4534	then
4535	if [[ $files_for_pes = false ]]
4536	then
4537	cat /dev/null > ${pathout[$i]}
4538	else
4539	mkdir -p ${pathout[$i]}
4540	fi
4541	fi
4542	fi
4543
4544	# APPEND AUF LOKALER MASCHINE
4545	if [[ "${actionout[$i]}" = "a" ]]
4546	then
4547	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4548	then
4549	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4550	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4551	else
4552	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4553	cat ${localout[$i]} >> ${pathout[$i]}
4554	fi
4555	fi
4556
4557	# KOPIEREN AUF LOKALER MASCHINE
4558	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4559	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4560	then
4561
4562	# KOPIEREN AUF EINPROZESSORMASCHINE
4563	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4564	then
4565	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4566	if [[ $link_local_output = true ]]
4567	then
4568	printf " using ln -f\n"
4569	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4570	fi
4571	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4572	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4573	then
4574	if [[ $link_local_output = true ]]
4575	then
4576	printf " ln failed, using cp...\n"
4577	fi
4578	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4579	fi
4580	else
4581	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4582	if [[ $link_local_output = true ]]
4583	then
4584	printf " using ln -f\n"
4585	ln -f ${localout[$i]} ${pathout[$i]}
4586	fi
4587	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4588	if [[ ! -f "${pathout[$i]}" ]]
4589	then
4590	if [[ $link_local_output = true ]]
4591	then
4592	printf " ln failed, using cp...\n"
4593	fi
4594	cp ${localout[$i]} ${pathout[$i]}
4595	fi
4596	fi
4597
4598	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4599	then
4600
4601	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4602	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4603	# WIRD DANN KOPIERT
4604	# PER MOVE UMBENANNT WERDEN
4605	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4606	if [[ $link_local_output = true ]]
4607	then
4608	printf " using ln -f\n"
4609	mkdir ${pathout[$i]}
4610	cd ${localout[$i]}
4611	for file in $(ls *)
4612	do
4613	ln -f $file ${pathout[$i]}
4614	done
4615	cd $TEMPDIR
4616	fi
4617	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4618	if [[ ! -f "${pathout[$i]}/_0000" ]]
4619	then
4620	if [[ $link_local_output = true ]]
4621	then
4622	printf " ln failed for .../_0000, using cp...\n"
4623	fi
4624	cp -r ${localout[$i]} ${pathout[$i]}
4625	fi
4626
4627	fi
4628	fi
4629	done
4630	if (( i != 0 ))
4631	then
4632	if [[ $transfer_problems = true ]]
4633	then
4634	printf "\n$striche\n *** OUTPUT-files saved"
4635	printf "\n +++ WARNING: some data transfers failed! \n"
4636	else
4637	printf "\n$striche\n *** all OUTPUT-files saved \n"
4638	fi
4639	fi
4640
4641
4642	# EVENTUELL FOLGEJOB STARTEN
4643	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4644	if [[ -f CONTINUE_RUN ]]
4645	then
4646
4647	if [[ $archive_save = true ]]
4648	then
4649
4650	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4651	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4652	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4653	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4654	# HANDEN
4655	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4656	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4657	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4658	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4659	then
4660	mc=`echo $mc \| sed 's/#/f/g'`
4661	fi
4662
4663
4664	# JOB STARTEN
4665	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4666	echo " $mc"
4667	printf "\n$striche\n"
4668	if [[ $localhost != $fromhost ]]
4669	then
4670
4671	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4672	then
4673	echo "*** ssh will be used to initiate restart-runs!"
4674	echo " return_addres=\"$return_addres\" "
4675	echo " return_username=\"$return_username\" "
4676	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4677	then
4678	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.1/073/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4679	else
4680	if [[ $localhost = ibmkisti ]]
4681	then
4682	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4683	else
4684	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4685	fi
4686	fi
4687	else
4688	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4689	locat=restart; exit
4690	fi
4691
4692	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4693	# DER AKTUELLE JOB ENDET
4694	if [[ $queue = special1q ]]
4695	then
4696	sleep 120
4697	else
4698	sleep 30
4699	fi
4700
4701	else
4702
4703	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4704	# RUFEN WERDEN, AUSSER AUF lcfimm
4705	cd $LOCAL_PWD
4706	if [[ $localhost = lcfimm ]]
4707	then
4708	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4709	else
4710	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4711	fi
4712	cd - > /dev/null
4713	fi
4714	printf "\n$striche\n *** restart-run initiated \n"
4715
4716
4717	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4718	# GEHOLT WORDEN SIND, LOESCHEN
4719	(( i = 0 ))
4720	while (( i < iin ))
4721	do
4722	(( i = i + 1 ))
4723	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4724	then
4725	rm -r $tmp_data_catalog/${frelin[$i]}
4726	fi
4727	done
4728
4729	else
4730
4731	printf "\n +++ no restart-run possible, since errors occured"
4732	printf "\n during the archive process"
4733	fi
4734
4735	fi
4736
4737
4738
4739	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4740	if [[ "$email_notification" != "none" ]]
4741	then
4742
4743	if [[ $localhost != $fromhost ]]
4744	then
4745	if [[ -f CONTINUE_RUN ]]
4746	then
4747	echo "PALM restart run necessary" > email_text
4748	echo "description header of actual run:" >> email_text
4749	cat CONTINUE_RUN >> email_text
4750	echo "mrun-command to restart:" >> email_text
4751	echo "$mc" >> email_text
4752	else
4753	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4754	fi
4755	mail $email_notification < email_text
4756	printf "\n *** email notification sent to \"$email_notification\" "
4757	fi
4758	fi
4759
4760
4761
4762	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4763	cd $HOME
4764	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4765
4766	else
4767
4768
4769	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4770	# CHENDE AKTIONEN DURCHGEFUEHRT
4771
4772	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4773	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q \$queue -R $return_addres -U $return_username -u $remote_username"
4774	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4775	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4776	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4777	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4778	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4779	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4780	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4781	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4782	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4783	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4784	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4785	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4786	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4787	if [[ $use_openmp = true ]]
4788	then
4789	mrun_com=${mrun_com}" -O $threads_per_task"
4790	fi
4791	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4792	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4793	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4794	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4795	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4796	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4797	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4798	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4799	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4800	if [[ $do_remote = true ]]
4801	then
4802	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4803	fi
4804
4805
4806	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4807	jobfile=jobfile.$RANDOM
4808
4809
4810	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4811	echo "mkdir $TEMPDIR" >> $jobfile
4812	echo "cd $TEMPDIR" >> $jobfile
4813
4814
4815	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4816	if [[ $do_trace = true ]]
4817	then
4818	echo "set -x" >> $jobfile
4819	else
4820	echo "set +vx" >> $jobfile
4821	fi
4822
4823
4824	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4825	# DATEI FUER DEN JOB
4826	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4827	then
4828
4829	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4830	# KOPIEREN
4831	if [[ $restart_run != true ]]
4832	then
4833	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4834	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4835	fi
4836
4837	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4838	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4839	echo "set -x" >> $jobfile
4840	if [[ $host = $localhost ]]
4841	then
4842	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4843	else
4844	if [[ $host != ibmkisti ]]
4845	then
4846	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4847	else
4848	# on KISTI's IBM firewall is only opened on interactive node
4849	echo "localdir=\`pwd\`" >> $jobfile
4850	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4851	fi
4852	fi
4853	echo "export SOURCES_COMPLETE=true" >> $jobfile
4854
4855	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4856	# ARBEITSVERZEICHNIS VERSCHIEBEN
4857	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4858	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4859	echo "execute_mrun=true" >> $jobfile
4860	echo " " >> $jobfile
4861
4862	else
4863
4864	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4865	# SOWIE GEGEBENENFALLS DES MAKEFILES
4866	if [[ $do_compile = true ]]
4867	then
4868
4869	source_catalog=SOURCES_FOR_RUN_$fname
4870
4871	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4872	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4873	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4874	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4875	echo "export SOURCES_COMPLETE=true" >> $jobfile
4876	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4877
4878	for filename in $source_list
4879	do
4880	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4881	echo "cat > $filename << \"%END%\"" >> $jobfile
4882	cat $source_catalog/$filename >> $jobfile
4883	echo " " >> $jobfile
4884	echo "%END%" >> $jobfile
4885	echo " " >> $jobfile
4886	done
4887
4888	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4889	echo "cat > Makefile << \"%END%\"" >> $jobfile
4890	cat $source_catalog/Makefile >> $jobfile
4891	echo " " >> $jobfile
4892	echo "%END%" >> $jobfile
4893	echo " " >> $jobfile
4894
4895	echo "cd - > /dev/null" >> $jobfile
4896
4897	fi
4898
4899
4900	# ABSPEICHERN DER KONFIGURATIONSDATEI
4901	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4902	echo "cat > $config_file << \"%END%\"" >> $jobfile
4903	cat $config_file >> $jobfile
4904	echo "%END%" >> $jobfile
4905	echo " " >> $jobfile
4906
4907
4908	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4909	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4910	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4911	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4912	echo "%END%" >> $jobfile
4913	echo "chmod u+x $mrun_script_name" >> $jobfile
4914	echo "execute_mrun=true" >> $jobfile
4915	echo " " >> $jobfile
4916
4917	fi
4918
4919
4920	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4921	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4922	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4923	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4924	if [[ $do_remote = true ]]
4925	then
4926	(( i = 0 ))
4927	while (( i < iin ))
4928	do
4929	(( i = i + 1 ))
4930	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4931	if [[ "${transin[$i]}" = job ]]
4932	then
4933	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4934	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4935	echo " " >> $jobfile
4936	echo "%END%" >> $jobfile
4937	else
4938	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4939	fi
4940
4941	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4942	echo "if [[ \$? = 1 ]]" >> $jobfile
4943	echo "then" >> $jobfile
4944	echo " echo \" \" " >> $jobfile
4945	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4946	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4947	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4948	echo " execute_mrun=false" >> $jobfile
4949	echo "fi" >> $jobfile
4950	done
4951	fi
4952
4953	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4954	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4955	echo "LOCAL_PWD=$working_directory" >> $jobfile
4956	echo "export LOCAL_PWD" >> $jobfile
4957
4958	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4959	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4960	echo "export LOCAL_MRUN_PATH" >> $jobfile
4961
4962	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4963	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4964	then
4965	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4966	fi
4967
4968	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4969	echo "set -x" >> $jobfile
4970	echo "queue=$queue" >> $jobfile
4971	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4972
4973	echo 'ls -al; echo `pwd`' >> $jobfile
4974	echo "cd \$HOME" >> $jobfile
4975	echo "rm -rf $TEMPDIR" >> $jobfile
4976
4977
4978
4979
4980	# JOB PER SUBJOB STARTEN
4981	if [[ $silent = false ]]
4982	then
4983	printf "\n "
4984	else
4985	printf "\n\n"
4986	fi
4987
4988	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4989	rm -rf $jobfile
4990
4991
4992	fi # ENDE REMOTE-TEIL
4993
4994
4995
4996	# ENDE DER PROZEDUR

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