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mrun @ 69

Last change on this file since 69 was 69, checked in by raasch, 17 years ago
scripts are running under pdksh
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1	#!/bin/pdksh
2
3	##!/home/DSRC/NC/tatuyama/pub/ksh NEEDED ON NEC AT RIAM !!!!!!!!!!
4
5	# mrun - Plot-Shellskript
6	# $Id: mrun 61 2007-03-12 05:42:06Z raasch $
7
8	# Prozedur zum Starten von Modellaeufen
9
10	# letzte Aenderung:
11	# 03/03/94 - Siggi - Entwicklungsbeginn
12	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
13	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
14	# zelne Variable exportiert. Dies ist noetig, weil an-
15	# sonsten irgendein Speicher ueberlaeuft und von mrun
16	# aufgerufene Programme (z.B. stageout) mit Fehlern
17	# abbrechen (too many arguments)
18	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
19	# defaultmaessig im RRZN-Profile eingeschaltet
20	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
21	# wegfallen
22	# 25/04/00 - Siggi - Version 1.5
23	# remote_addres und remote_user in return_addres bzw.
24	# return_username umbenannt, return_username wird dem
25	# mrun-Aufruf im Job ueber Option -U mitgegeben.
26	# Neue Variable remote_username, die beim interaktiven
27	# mrun-Aufruf zwingend ueber die neue Option -u oder
28	# in der Konfigurationsdatei angegeben werden muss.
29	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
30	# Version 1.7
31	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
32	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
33	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
34	# zu bestimmen; Praeprozessoroptionen haben nun alle
35	# die Form -Dtext=text, weil auf IBM sonst text durch
36	# die leere Zeichenkette ersetzt wird
37	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
38	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
39	# (-D$OMP=OMP) in order to avoid problems with
40	# OMP_NUM_THREADS
41	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
42	# tar files, one for each node used
43	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
44	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
45	# 17/01/05 - Siggi - job for data transfer to local machine now within
46	# job class c1 (HLRN)
47	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
48	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
49	# base filename and cycle number
50	# 16/02/05 - Gerald - hababai validated
51	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
52	# 29/03/05 - Marcus - berni*-en0 validated
53	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
54	# 24/04/05 - Siggi - netcdf support on lcmuk
55	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
56	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
57	# number) can now be used within interactive runs
58	# 12/05/05 - Siggi - netcdf support on ibm
59	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
60	# 18/05/05 - Siggi - netcdf support on nec
61	# 24/05/05 - Siggi - netcdf support on ibms
62	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
63	# to 30 seconds
64	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
65	# PATH is temporarily set)
66	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
67	# caused warnings in the job protocol
68	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
69	# 25/10/05 - Siggi - error in listing files for getting the cycle number
70	# removed
71	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
72	# realized by file attribute trpe
73	# 28/10/05 - Siggi - if existing, the file extension is output in case
74	# of missing input file - no job abort in case of
75	# missing input files with file extensions
76	# (preliminary solution)
77	# 31/10/05 - Siggi - data transfer from nech now within seperate job
78	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
79	# 07/12/05 - Siggi - gallego and elephanta admitted
80	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
81	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
82	# 20/01/06 - Siggi - cpp directive for ibmy
83	# 09/02/06 - Siggi - ibmy admitted for batch mode
84	# 13/04/06 - Siggi - ostria admitted
85	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
86	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
87	# optimization of OpenMP runs (option stacksize is
88	# necessary for large gridpoint numbers because
89	# otherwise a segmentation fault occurs)
90	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
91	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
92	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
93	# 20/09/06 - Marcus - add DVRP library on nech
94	# 24/10/06 - Siggi - Environment variables for PALM steering are written
95	# on local NAMELIST file ENVPAR
96	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
97	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
98	# 06/02/07 - Siggi - add DVRP library on lcmuk
99	# 07/02/07 - Siggi - revision of source code handling, source code is
100	# now expected in directory given by source_path and
101	# not in the current working directory, source code
102	# files provided in add_source_path are allways
103	# compiled, source code to be compiled is allways
104	# sampled in SOURCES_FOR_RUN_$fname which is a
105	# subdirectory of the current working directory,
106	# -s TEST changed to -s WRITE_PERMIT or -s WP,
107	# adapted for RIAM (neck)
108	# bugfix for cycle number of output file (extout)
109	# all hpmuk-related code removed
110	# 14/02/07 - Siggi - dvrp support for neck added
111	# 28/02/07 - Siggi - empty lines in configuration file are accepted
112	# mrun_path replaced by PALM_BIN,
113	# all machines are calling interpret_config.x
114	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
115	# output
116	# 16/03/07 - Siggi - adjustments for lctit
117
118
119
120
121	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
122
123	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
124	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
125	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
126
127	AddFilenames=""
128	additional_conditions=""
129	add_source_path=""
130	afname=""
131	archive_save=true
132	archive_system=none
133	compiler_name=""
134	cond1=""
135	cond2=""
136	config_file=.mrun.config
137	cpp_opts=""
138	cpumax=0
139	cpurest=0
140	delete_temporary_catalog=true
141	do_batch=false
142	do_compile=true
143	do_remote=false
144	do_stagein=true
145	do_stageout=true
146	do_trace=false
147	email_notification=""
148	exclude=""
149	executable=""
150	execution_error=false
151	filetransfer_protocol=""
152	fimm=false
153	fname=test
154	fromhost=""
155	host=""
156	host_file=""
157	hp=""
158	ignore_archive_error=false
159	input_list=""
160	interpreted_config_file=""
161	job_on_file=""
162	keep_data_from_previous_run=false
163	localhost_realname=$(hostname)
164	local_compile=false
165	locat=normal
166	mainprog=""
167	makefile=""
168	mc=$0
169	while [[ $(echo $mc \| grep -c "/") != 0 ]]
170	do
171	mc=`echo $mc \| cut -f2- -d"/"`
172	done
173	module_files=""
174	MODULE_OPTIONS=""
175	mrun_script_name=$mc
176	netcdf_support=false
177	node_usage=default
178	numprocs=""
179	OOPT=""
180	openmp=false
181	output_list=""
182	package_list=""
183	punkte="..........................................................."
184	queue=none
185	read_from_config=""
186	restart_run=false
187	# return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
188	return_addres=1.2.3.4
189	if [[ $return_addres = 130.75.105.158 ]]
190	then
191	return_addres=172.20.25.41
192	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
193	fi
194	# if [[ $return_addres = 210.117.65.1 ]]
195	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
196	# then
197	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
198	# fi
199	return_password=""
200	return_username=$LOGNAME
201	remotecall=false
202	remote_username=""
203	run_mode=""
204	scirocco=false
205	store_on_archive_system=true
206	striche=" ----------------------------------------------------------------------------"
207	silent=false
208	source_list=""
209	source_path=SOURCE
210	tasks_per_node=""
211	threads_per_task=1
212	tmpcreate=false
213	tmp_data_catalog=""
214	transfer_problems=false
215	usern=$LOGNAME
216	use_makefile=""
217	working_directory=`pwd`
218	TOPT=""
219	XOPT=""
220	zeit=$( date \| cut -c 12-19 )
221
222	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
223	typeset -i cputime i ii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
224
225	typeset -R30 calltime
226	typeset -L20 spalte1
227	typeset -L40 spalte2
228	typeset -L60 spalte3
229	typeset -L35 string1=`date`
230	typeset -L12 string2=$usern
231	typeset -L12 string3=$localhost_realname
232	typeset -L12 string4
233	typeset -L12 string5
234	typeset -L30 version="MRUN 2.0 Rev$Rev: 69 $"
235
236
237
238	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
239	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
240
241	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
242	# EXPORTIERT WERDEN
243	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
244	export input_list memory numprocs output_list queue run_mode
245
246
247
248	# FEHLERBEHANDLUNG
249	# BEI EXIT:
250	trap 'rm -rf tmp_mrun
251	if [[ $locat != localhost ]]
252	then
253	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
254	# then
255	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
256	#MRUN-calls on $localhost
257	#
258	#date and time user localhost remotehost termination mrun-command
259	#--------------------------------------------------------------------------------------------------------------------
260	#%STATEND%
261	# chmod 666 ${mrun_path}/statistik/mrun_statistik
262	# fi
263	#
264	# # EINTRAG IN DIE STATISTIK-DATEI
265	# string4=$host
266	# string5=$locat
267	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
268	# then
269	# if [[ $do_batch = true ]]
270	# then
271	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
272	# else
273	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
274	# fi
275	# fi
276	echo " " > /dev/null
277	fi
278
279	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
280	then
281
282	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
283	(( i = 0 ))
284	while (( i < iec ))
285	do
286	(( i = i + 1 ))
287	printf "\n *** Execution of ERROR-command:\n"
288	printf " >>> ${err_command[$i]}\n"
289	eval ${err_command[$i]}
290	done
291	if [[ -n $interpreted_config_file ]] then
292	rm -rf $interpreted_config_file
293	fi
294	if [[ $tmpcreate = true ]]
295	then
296	printf "\n *** Contents of \"$TEMPDIR\":\n"
297	ls -al; cd
298	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
299	fi
300	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
301	then
302	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
303	fi
304	printf "\n\n+++ MRUN killed \n\n"
305	elif [[ $locat != control_c ]]
306	then
307	printf "\n\n --> all actions finished\n\n"
308	printf " Bye, bye $usern !!\n\n"
309	fi' exit
310
311
312	# BEI TERMINAL-BREAK:
313	trap 'rm -rf tmp_mrun
314	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
315	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
316	then
317	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
318	fi
319	printf "\n+++ MRUN killed by \"^C\" \n\n"
320	locat=control_c
321	exit
322	' 2
323
324
325	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
326	# BEEN SET
327	if [[ "$PALM_BIN" = "" ]]
328	then
329	printf "\n +++ environment variable PALM_BIN has not been set"
330	printf "\n please set it to the directory where the PALM scripts are located"
331	locat=palm_bin; exit
332	fi
333
334
335	# EVTL. NAMEN DES LOKALEN RECHNERS MIT UEBERGREIFENDEM NAMEN VERSEHEN
336	case $localhost_realname in
337	(atmos) localhost=lcide;;
338	(bora\|breva\|elephanta\|gallego\|gregale\|hababai\|irifi\|levanto\|maestro\|orkan\|ostria\|poniente\|quanero\|scirocco\|vorias) localhost=lcmuk;;
339	(breg-en0\|berni-en0) localhost=ibmb; archive_system=tivoli;;
340	(cs*) localhost=nech; archive_system=ut;;
341	(fimm.bccs.uib.no) localhost=lcmuk;;
342	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII; localhost=neck;;
343	(ground.yonsei.ac.kr) localhost=decalpha;;
344	(gfdl3.yonsei.ac.kr) localhost=decalpha;;
345	(gfdl5) localhost=ibmy;;
346	(hreg-en0\|hanni-en0) localhost=ibmh; archive_system=tivoli;;
347	(nobel*) localhost=ibms;;
348	(sun1\|sun2) localhost=unics;;
349	(tgg*) localhost=lctit;;
350	(*) printf "\n +++ Host \"$localhost_realname\" not admitted for mrun \n"
351	locat=localhost; exit;;
352	esac
353
354	[[ $localhost_realname = scirocco ]] && scirocco=true
355	[[ $localhost_realname = fimm.bccs.uib.no ]] && fimm=true
356
357
358
359	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
360	# FUER FOLGEJOBS BENOETIGT WIRD
361	while getopts :a:AbBc:Cd:D:f:Fh:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX: option
362	do
363	case $option in
364	(a) afname=$OPTARG;;
365	(A) store_on_archive_system=false; mc="$mc -A";;
366	(b) do_batch=true; mc="$mc -b";;
367	(B) delete_temporary_catalog=false; mc="$mc -B";;
368	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
369	(C) restart_run=true; mc="$mc -C";;
370	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
371	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
372	(f) filetransfer_protocol=$OPTARG; mc="$mc -f$OPTARG";;
373	(F) job_on_file="-D"; mc="$mc -F";;
374	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
375	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
376	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
377	(I) ignore_archive_error=true; mc="$mc -I";;
378	(k) keep_data_from_previous_run=true; mc="$mc -k";;
379	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
380	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
381	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
382	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
383	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
384	(O) use_openmp=true; mc="$mc -O";;
385	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
386	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
387	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
388	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
389	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
390	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
391	(S) read_from_config=false; mc="$mc -S";;
392	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
393	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
394	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
395	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
396	(v) silent=true; mc="$mc -v";;
397	(x) do_trace=true;set -x; mc="$mc -x";;
398	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
399	(\?) printf "\n +++ unknown option $OPTARG \n"
400	printf "\n --> type \"$0 ?\" for available options \n"
401	locat=parameter;exit;;
402	esac
403	done
404
405
406	# EVTL. POSITIONSPARAMETER EINLESEN
407	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
408	shift OPTIND-1
409
410
411	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
412	if [[ "$1" = "?" ]]
413	then
414	(printf "\n *** mrun can be called as follows:\n"
415	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
416	printf "\n Description of available options:\n"
417	printf "\n Option Description Default-Value"
418	printf "\n -a base name of input files equiv. -d"
419	printf "\n -A no archiving when using file-attribute fl"
420	printf "\n -b batch-job on local machine ---"
421	printf "\n -B do not delete temporary directory at end ---"
422	printf "\n -c configuration file .mrun.config"
423	printf "\n -d base name of files attached to program test"
424	printf "\n -D preprocessor(cpp)-directives \"\" "
425	printf "\n -f filetransfer protocol (ftp or scp) depending on -h"
426	printf "\n -F create remote job file only ---"
427	printf "\n -h execution host $localhost_realname"
428	printf "\n -i INPUT control list \"\" "
429	printf "\n -I archiving errors of previous batch-jobs"
430	printf "\n will be ignored"
431	printf "\n -k keep data from previous run"
432	printf "\n -K additional conditions for controling"
433	printf "\n usage of conditional code and"
434	printf "\n env-variables in configuration file \"\" "
435	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
436	printf "\n -M Makefile name Makefile"
437	printf "\n -n node usage (shared/not_shared) depending on -h"
438	printf "\n -o OUTPUT control list \"\" "
439	printf "\n -O use OpenMP ---"
440	printf "\n -p software package list \"\" "
441	printf "\n -q queue \"$queue\" "
442	printf "\n -r run control list (combines -i -o) \"\" "
443	printf "\n -s filenames of routines to be compiled \"\" "
444	printf "\n must end with .f, .f90, .F, or .c !"
445	printf "\n use \"..\" for more than one file and wildcards"
446	printf "\n -s TEST compiles all files with w-permit"
447	printf "\n -S config file interpreted by shellscript ---"
448	printf "\n -t allowed cpu-time in seconds (batch) 0"
449	printf "\n -T tasks per node depending on -h"
450	printf "\n -u username on remote machine \"\" "
451	printf "\n -v no prompt for confirmation ---"
452	printf "\n -x tracing of mrun for debug purposes ---"
453	printf "\n -X # of processors (on parallel machines) 1"
454	printf "\n "
455	printf "\n Possible values of positional parameter <modus>:"
456	printf "\n \"?\" - this outline \n\n") \| more
457	exit
458	elif [[ "$1" != "" ]]
459	then
460	printf "\n +++ positional parameter $1 unknown \n"
461	locat=parameter; exit
462	fi
463
464
465
466	# KURZE STARTMELDUNG
467	printf "\n*** $version "
468	printf "\n will be executed. Please wait ..."
469
470
471	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
472	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
473	[[ "$afname" = "" ]] && afname=$fname
474
475
476	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
477	if [[ "$run_mode" != "" ]]
478	then
479	input_list="$input_list $run_mode"
480	output_list="$output_list $run_mode"
481	fi
482
483
484	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
485	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
486	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
487	# STARTET)
488	if [[ "$fromhost" = "" ]]
489	then
490	fromhost=$localhost
491	fi
492
493
494	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
495	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
496	then
497	source_list=TEST
498	local_compile=true
499	host=$localhost
500	fi
501
502
503	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
504	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
505	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
506	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
507	if [[ -n $host && "$host" != $localhost ]]
508	then
509	do_batch=true
510	do_remote=true
511	case $host in
512	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
513	(*) printf "\n"
514	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
515	printf "\n or NQS not available on execution host!"
516	locat=nqs; (( iec = 0 )); exit;;
517	esac
518	else
519	host=$localhost
520	fi
521
522
523	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
524	if [[ -n $additional_conditions ]]
525	then
526	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
527	cond1=`echo $additional_conditions \| cut -d" " -f1`
528	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
529	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
530	if [[ -n $dummy ]]
531	then
532	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
533	locat=options; exit
534	fi
535	fi
536
537
538	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
539	# ARCHIVIERUNG FEHLGESCHLAGEN IST
540	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
541	then
542	if [[ $ignore_archive_error = false ]]
543	then
544	printf "\n +++ data archiving of previous run failed"
545	printf "\n see directory \~/job_queue on remote machine"
546	locat=archive; exit
547	else
548	printf "\n +++ warning: data archiving in a previous run failed"
549	printf "\n MRUN continues, trying to get backup copy"
550	fi
551	fi
552
553
554	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
555	if [[ ! -f $config_file ]]
556	then
557	printf "\n\n +++ configuration file: "
558	printf "\n $config_file"
559	printf "\n does not exist"
560	locat=connect; exit
561	fi
562
563
564
565	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
566	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
567	if [[ "$read_from_config" = false ]]
568	then
569
570	[[ $silent = false ]] && printf "\n Reading the configuration file... "
571	while read zeile
572	do
573	[[ $silent = false ]] && printf "."
574
575
576	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
577	# ERSETZEN
578	eval zeile=\"$zeile\"
579
580
581	# INTERPRETATION DER ZEILE
582	if [[ "$(echo $zeile)" = "" ]]
583	then
584	# LEERZEILE, KEINE AKTION
585	continue
586
587	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
588	then
589
590	# ZEILE IST KOMMENTARZEILE
591	true
592
593	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
594	then
595
596	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
597	zeile=$(echo $zeile \| cut -c2-)
598	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
599	var=`echo $zeile \| cut -d" " -f1`
600	value=`echo $zeile \| cut -d" " -s -f2`
601	for_host=`echo $zeile \| cut -d" " -s -f3`
602	for_cond1=`echo $zeile \| cut -d" " -s -f4`
603	for_cond2=`echo $zeile \| cut -d" " -s -f5`
604
605	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
606	then
607
608	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
609	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
610	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
611
612
613	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
614	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
615	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
616	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
617	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
618	# KONFIGURATIONSDATEI
619	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
620	then
621	eval $var=\$value
622
623	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
624	if [[ $do_trace = true ]]
625	then
626	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
627	fi
628	fi
629
630	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
631	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
632	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
633	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
634	if [[ $var = host ]]
635	then
636	if [[ -n $host && "$host" != $localhost ]]
637	then
638	do_batch=true
639	do_remote=true
640	case $host in
641	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
642	(*) printf "\n +++ no queueing system available on execution host \"$host\""
643	locat=nqs; exit;;
644	esac
645	else
646	host=$localhost
647	fi
648	fi
649
650	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
651	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
652	# DEN PROGRAMMEN BENOETIGT WERDEN
653	export $var
654	fi
655
656
657
658
659	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
660	then
661
662	# ZEILE DEFINIERT ERROR-KOMMANDO
663	(( iec = iec + 1 ))
664	zeile=$(echo $zeile \| cut -c4-)
665	err_command[$iec]="$zeile"
666
667	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
668	then
669
670	# ZEILE DEFINIERT INPUT-KOMMANDO
671	(( iic = iic + 1 ))
672	zeile=$(echo $zeile \| cut -c4-)
673	in_command[$iic]="$zeile"
674
675	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
676	then
677
678	# ZEILE DEFINIERT OUTPUT-KOMMANDO
679	(( ioc = ioc + 1 ))
680	zeile=$(echo $zeile \| cut -c4-)
681	out_command[$ioc]="$zeile"
682
683	else
684
685	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
686	# s2a: in/out - Feld
687	# s2b: loc - Feld (optional)
688	# s2c: tr/ar - Feld (optional)
689	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
690	s1=`echo $zeile \| cut -d" " -f1`
691	s2=`echo $zeile \| cut -d" " -s -f2`
692	s2a=$(echo $s2 \| cut -d":" -f1)
693	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
694	then
695	s2b=""
696	s2c=""
697	else
698	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
699	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
700	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
701	fi
702	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
703	s3=`echo $zeile \| cut -d" " -f3`
704	s4=`echo $zeile \| cut -d" " -s -f4`
705	s5=`echo $zeile \| cut -d" " -s -f5`
706	s6=`echo $zeile \| cut -d" " -s -f6`
707
708
709	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
710	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
711	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
712	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
713	# HANDEN SEIN MUSS (D.H. s2b = loc)
714	IFSALT="$IFS"; IFS="$IFS:"
715	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
716	then
717	found=false
718	for actual in $input_list
719	do
720	for formal in $s3
721	do
722	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
723	done
724	done
725	if [[ $found = true ]]
726	then
727	(( iin = iin + 1 ))
728	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
729	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
730	extin[$iin]=$s6
731	fi
732	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
733	then
734	found=false
735	for actual in $output_list
736	do
737	for formal in $s3
738	do
739	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
740	done
741	done
742	if [[ $found = true ]]
743	then
744	(( iout = iout + 1 ))
745	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
746	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
747	fi
748	elif [[ "$s2a" != in && "$s2a" != out ]]
749	then
750	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
751	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
752	locat=connect; exit
753	fi
754	IFS="$IFSALT"
755	fi
756	done < $config_file
757
758	else
759
760
761	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
762	[[ $silent = false ]] && printf "..."
763	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
764	export interpreted_config_file=.icf.$RANDOM
765
766	# case $localhost_realname in
767	# (caurus\|twister) interpret_config.hp;;
768	# (bora\|breva\|elephanta\|gallego\|gregale\|hababai\|maestro\|orkan\|ostria) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel_ifc/8.1/lib/; interpret_config_9.x;;
769	# (levanto\|vorias) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/muksoft/packages/intel/ifort/9.1.037/lib/; interpret_config_9.x_levanto;;
770	# (quanero) export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel_fc_80/lib; interpret_config_9.x;;
771	# (*) interpret_config.x;;
772	# esac
773
774
775	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
776	# VERFUEGUNG STELLEN
777	cat > .mrun_environment << %%END%%
778	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
779	config_file = '$config_file', do_remote = '$do_remote',
780	do_trace = '$do_trace', host = '$host',
781	input_list = '$input_list', icf = '$interpreted_config_file',
782	localhost = '$localhost', output_list = '$output_list' /
783
784	%%END%%
785
786	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
787	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
788	mrun_memory=$memory
789	mrun_cpumax=$cpumax
790	mrun_numprocs=$numprocs
791
792	if [[ $localhost_realname = "gate" ]]
793	then
794	interpret_config_gate.x
795	else
796	interpret_config.x
797	fi
798
799	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
800	chmod u+x $interpreted_config_file
801	export PATH=$PATH:.
802	. $interpreted_config_file
803	# rm $interpreted_config_file
804
805	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
806	[[ "mrun_memory" != "" ]] && memory=$mrun_memory
807	[[ "mrun_cpumax" != "" ]] && cpumax=$mrun_cpumax
808	[[ "mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
809
810	fi
811
812
813	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
814	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
815	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
816	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
817	if [[ "$SOURCES_COMPLETE" = "" ]]
818	then
819
820	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
821	# VEREINBART WURDE
822	source_path=""
823	line=""
824	grep "%source_path" $config_file > tmp_mrun
825	while read line
826	do
827	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
828	then
829	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
830	then
831	global_source_path=`echo $line \| cut -d" " -f2`
832	fi
833	fi
834	done < tmp_mrun
835
836	line=""
837	found=false
838	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
839	while read line
840	do
841	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
842	then
843	if [[ $found = true ]]
844	then
845	printf "\n\n +++ more than one source path found in configuration file"
846	printf "\n for local host \"$localhost\" "
847	locat=source_path; exit
848	fi
849	source_path=`echo $line \| cut -d" " -f2`
850	found=true
851	fi
852	done < tmp_mrun
853	rm tmp_mrun
854
855	if [[ "$source_path" = "" ]]
856	then
857	if [[ "$global_source_path" != "" ]]
858	then
859	source_path=$global_source_path
860	else
861	printf "\n\n +++ no source path found in configuration file"
862	printf "\n for local host \"$localhost\" "
863	locat=source_path; exit
864	fi
865	fi
866	eval source_path=$source_path
867
868	if [[ ! -d $source_path ]]
869	then
870	printf "\n\n +++ source path \"$source_path\" on local host"
871	printf "\n \"$localhost\" does not exist"
872	locat=source_path; exit
873	fi
874
875	fi
876
877
878
879	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
880	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
881	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
882	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
883	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
884	if [[ -n $host && "$host" != $localhost ]]
885	then
886	do_batch=true
887	do_remote=true
888	case $host in
889	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
890	(*) printf "\n"
891	printf "\n +++ execution host \"$host\" not admitted for MRUN,"
892	printf "\n or no queueing system available on execution host!"
893	locat=nqs; (( iec = 0 )); exit;;
894	esac
895	else
896	host=$localhost
897	fi
898
899
900	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
901	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
902	then
903
904	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
905	if [[ ! -n $numprocs ]]
906	then
907	printf "\n"
908	printf "\n +++ option \"-K parallel\" requires additional specification"
909	printf "\n of the number of processors to be used by"
910	printf "\n mrun-option \"-X\" or by environment-variable"
911	printf "\n \"numprocs\" in the configuration file"
912	locat=numprocs; (( iec = 0 )); exit
913	fi
914
915	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
916	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
917	# GESAMTPROZESSORANZAHL IST
918	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
919	then
920	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
921	(( ival = $tasks_per_node ))
922	(( pes = numprocs ))
923	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
924	# then
925	# (( pes = pes - 1 ))
926	# fi
927	(( ii = pes / ival ))
928	if (( pes - ii * ival > 0 ))
929	then
930	printf "\n"
931	printf "\n +++ tasks per node (option \"-T\") must be an integral"
932	printf "\n divisor of the total number of processors (option \"-X\")"
933	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
934	locat=tasks_per_node; (( iec = 0 )); exit
935	fi
936	fi
937
938	# IBMY HAT NUR EINEN KNOTEN
939	if [[ $host = ibmy ]]
940	then
941	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
942	then
943	printf "\n"
944	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
945	printf "\n total number of processors (option \"-X\")"
946	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
947	locat=tasks_per_node; (( iec = 0 )); exit
948	fi
949	fi
950
951	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
952	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
953	if [[ $use_openmp = true ]]
954	then
955	threads_per_task=$tasks_per_node
956	tasks_per_node=1
957	fi
958	OOPT="-O $threads_per_task"
959	TOPT="-T $tasks_per_node"
960
961	# GESAMTZAHL DER KNOTEN BESTIMMEN
962	if [[ "$tasks_per_node" != "" ]]
963	then
964	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
965	fi
966
967	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
968	# SETZEN
969	if [[ $node_usage = default ]]
970	then
971	if [[ $host = ibms ]]
972	then
973	node_usage=shared
974	else
975	node_usage=not_shared
976	fi
977	fi
978	if [[ $node_usage != shared && $node_usage != not_shared ]]
979	then
980	printf "\n"
981	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
982	printf "\n \"shared\" or \"not_shared\""
983	locat=tasks_per_node; (( iec = 0 )); exit
984	fi
985
986	fi
987
988	# PRUEFEN, OB HOSTFILE EXISTIERT
989	if [[ -n $hostfile ]]
990	then
991	if [[ ! -f $hostfile ]]
992	then
993	printf "\n"
994	printf "\n +++ hostfile \"$hostfile\" does not exist"
995	locat=hostfile; exit
996	fi
997	fi
998
999	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1000	if [[ $host = ibmy && $do_remote = false ]]
1001	then
1002	if [[ ! -f $HOME/.rhosts ]]
1003	then
1004	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1005	printf "\n\n *** file:"
1006	printf "\n $HOME/.rhosts"
1007	printf "\n was created\n"
1008	fi
1009	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1010	then
1011	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1012	printf "\n\n *** file:"
1013	printf "\n $HOME/.rhosts"
1014	printf "\n was extended by the name of the current host\n"
1015	fi
1016	fi
1017
1018	# DEFAULT-DATEITRANSFER-PROTOKOLL FESTLEGEN
1019	if [[ "$filetransfer_protocol" = "" ]]
1020	then
1021	case $host in
1022	(nech\|neck\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit) filetransfer_protocol=scp;;
1023	(*) filetransfer_protocol=ftp;;
1024	esac
1025	fi
1026
1027	# PRUEFEN, OB ZULAESSIGES DATEITRANSFER-PROTOKOLL GEWAEHLT WURDE
1028	if [[ "$filetransfer_protocol" != ftp && "$filetransfer_protocol" != scp ]]
1029	then
1030	printf "\n"
1031	printf "\n +++ illegal value \"$filetransfer_protocol\" for Option -f"
1032	printf "\n only \"ftp\" or \"scp\" are allowed"
1033	locat=options; exit
1034	fi
1035
1036
1037	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1038	if [[ $queue = none ]]
1039	then
1040	case $host in
1041	(ibmb) if [[ $node_usage = shared ]]
1042	then
1043	queue=cshare
1044	else
1045	queue=csolo
1046	fi;;
1047	(ibmh) if [[ $node_usage = shared ]]
1048	then
1049	queue=cshare
1050	else
1051	queue=csolo
1052	fi;;
1053	(ibmy) queue=parallel;;
1054	(lctit) queue=default;;
1055	(nech) queue=none;;
1056	(neck) queue=P;;
1057	(unics) queue=unics;;
1058	esac
1059	fi
1060
1061
1062	# EVTL. NETCDF-UNTERSTUETZUNG SETZEN
1063	case $host in
1064	(decalpha) netcdf_support=true
1065	netcdf_path=/usr/local/netcdf-3.5.1;;
1066	(ibmb\|ibmh) netcdf_support=true
1067	netcdf_path=/aws/dataformats/netcdf-3.6.0-p1/64-32;;
1068	(ibms) netcdf_support=true
1069	netcdf_path=/applic/lib/NETCDF64;;
1070	(ibmy) netcdf_support=true
1071	netcdf_path=/usr1/users/raasch/pub/netcdf-3.6.0-p1;;
1072	(lcmuk) netcdf_support=true
1073	if [[ $scirocco = true ]]
1074	then
1075	netcdf_path=/opt/netcdf/3.6.2-beta4
1076	elif [[ $fimm = true ]]
1077	then
1078	netcdf_path=/local/netcdf
1079	else
1080	netcdf_path=/muksoft/packages/netcdf/linux
1081	fi;;
1082	(lctit) netcdf_support=true
1083	netcdf_path=/home2/usr5/mkanda/netcdf-3.6.2;;
1084	(nech) netcdf_support=true
1085	netcdf_path=/pool/SX-6/netcdf/netcdf-3.6.0-p1;;
1086	(neck) netcdf_support=true
1087	netcdf_path=/home/DSRC/NC/tatuyama/pub/netcdf-3.6.0-p1;;
1088	esac
1089
1090
1091	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1092	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1093	# ERMITTELN
1094	(( i = 0 ))
1095	while (( i < iin ))
1096	do
1097	(( i = i + 1 ))
1098	(( maxcycle = 0 ))
1099
1100	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1101	if [[ "${actionin[$i]}" = di ]]
1102	then
1103	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1104	# REM-MASCHINE AUSWERTEN
1105	eval filename=${pathin[$i]}/${endin[$i]}
1106	else
1107	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1108	# REM-MASCHINE AUSWERTEN
1109	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1110	fi
1111
1112	# PRUEFEN AUF VORHANDENSEIN
1113	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1114	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1115	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1116	then
1117	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1118	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1119	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1120	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1121	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1122	if [[ "${transin[$i]}" != "locopt" ]]
1123	then
1124	printf "\n\n +++ INPUT-file: "
1125	if [[ "${extin[$i]}" = "" ]]
1126	then
1127	printf "\n $filename"
1128	else
1129	printf "\n $filename.${extin[$i]}"
1130	fi
1131	printf "\n does not exist\n"
1132	locat=input; exit
1133	else
1134	transin[$i]="unavailable"
1135	fi
1136	else
1137
1138	# ZYKLUSNUMMER FESTSTELLEN
1139	ls -1 -d $filename > filelist 2>/dev/null
1140	ls -1 -d $filename.* >> filelist 2>/dev/null
1141	while read zeile
1142	do
1143	cycle=$(print $zeile \| cut -f2 -d".")
1144	if [[ "$cycle" = "$zeile" ]]
1145	then
1146	(( icycle = 0 ))
1147	elif [[ "$cycle" = "${extin[$i]}" ]]
1148	then
1149	(( icycle = 0 ))
1150	else
1151	(( icycle = $cycle ))
1152	fi
1153	if (( icycle > maxcycle ))
1154	then
1155	(( maxcycle = icycle ))
1156	file_to_be_used=$zeile
1157	fi
1158	done <filelist
1159	rm filelist
1160
1161	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1162	if (( maxcycle > 0 ))
1163	then
1164	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1165	then
1166	filename=${filename}.$maxcycle.${extin[$i]}
1167	else
1168	filename=${filename}.$maxcycle
1169	fi
1170	else
1171	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1172	then
1173	filename=${filename}.${extin[$i]}
1174	fi
1175	fi
1176
1177	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1178	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1179	absnamein[$i]=$filename
1180	if (( maxcycle > 0 ))
1181	then
1182	if [[ "${actionin[$i]}" = di ]]
1183	then
1184	frelin[$i]=${endin[$i]}.$maxcycle
1185	else
1186	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1187	fi
1188	else
1189	if [[ "${actionin[$i]}" = di ]]
1190	then
1191	frelin[$i]=${endin[$i]}
1192	else
1193	frelin[$i]=${afname}${endin[$i]}
1194	fi
1195	fi
1196
1197	fi
1198	done
1199
1200
1201	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1202	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1203	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1204	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1205	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1206	(( i = 0 ))
1207	while (( i < iout ))
1208	do
1209	(( i = i + 1 ))
1210	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1211	then
1212	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
1213	then
1214	actionout[$i]=""
1215	elif [[ "${actionout[$i]}" = tra ]]
1216	then
1217	actionout[$i]=a
1218	fi
1219	(( maxcycle = 0 ))
1220	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1221	eval catalogname=${pathout[$i]}
1222	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1223	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1224	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1225	then
1226
1227	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1228	if cat /dev/null > $filename
1229	then
1230	rm $filename
1231	else
1232
1233	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1234	if [[ ! -d $catalogname ]]
1235	then
1236	if mkdir -p $catalogname
1237	then
1238	printf "\n\n *** directory:"
1239	printf "\n $catalogname"
1240	printf "\n was created\n"
1241	else
1242	printf "\n\n +++ OUTPUT-file:"
1243	printf "\n $filename"
1244	printf "\n cannot be created, because directory does not exist"
1245	printf "\n and cannot be created either"
1246	printf "\n"
1247	locat=output ; exit
1248	fi 2>/dev/null
1249	else
1250	printf "\n\n +++ OUTPUT-file:"
1251	printf "\n $filename"
1252	printf "\n cannot be created, although directory exists"
1253	printf "\n"
1254	locat=output ; exit
1255	fi
1256	fi 2>/dev/null
1257	else
1258
1259	# ZYKLUSNUMMER FESTSTELLEN
1260	ls -1 -d $filename > filelist 2>/dev/null
1261	ls -1 -d $filename.* >> filelist 2>/dev/null
1262	while read zeile
1263	do
1264	cycle=$(print $zeile \| cut -f2 -d".")
1265	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1266	then
1267	(( icycle = 1 ))
1268	else
1269	(( icycle = $cycle + 1 ))
1270	fi
1271	if (( icycle > maxcycle ))
1272	then
1273	(( maxcycle = icycle ))
1274	fi
1275	done <filelist
1276	rm filelist
1277	fi
1278
1279	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1280	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1281	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1282	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1283	if [[ "${actionout[$i]}" != a ]]
1284	then
1285	if (( maxcycle > 0 ))
1286	then
1287	filename=${filename}.$maxcycle
1288	if cat /dev/null > $filename
1289	then
1290	rm $filename
1291	else
1292	printf "\n +++ OUTPUT-file:"
1293	printf "\n $filename"
1294	printf "\n cannot be created"
1295	locat=output ; exit
1296	fi
1297	fi
1298	else
1299	(( maxcycle = maxcycle - 1 ))
1300	if (( maxcycle > 0 ))
1301	then
1302	filename=${filename}.$maxcycle
1303	fi
1304	fi
1305
1306	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1307	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1308	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1309	pathout[$i]=$filename
1310	if (( maxcycle > 0 ))
1311	then
1312	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1313	else
1314	frelout[$i]=${fname}${endout[$i]}
1315	fi
1316
1317	fi
1318	done
1319
1320
1321	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1322	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1323	# UEBERSETZT ZU WERDEN)
1324	if [[ "$mainprog" = "" && "$executable" = "" ]]
1325	then
1326	printf "\n +++ neither main program nor executable defined"
1327	locat=source; exit
1328	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1329	then
1330	printf "\n +++ main program as well as executable defined"
1331	locat=source; exit
1332	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1333	then
1334	do_compile=false
1335	fi
1336
1337
1338	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1339	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1340	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1341	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1342	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1343	then
1344
1345	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1346	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1347
1348	if [[ $restart_run != true ]]
1349	then
1350	rm -rf SOURCES_FOR_RUN_$fname
1351	mkdir SOURCES_FOR_RUN_$fname
1352	fi
1353
1354
1355	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1356	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1357	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1358	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1359	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1360	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1361	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1362	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1363	# GESAMMELT
1364	if [[ "$source_list" = WRITE_PERMIT ]]
1365	then
1366
1367	source_list=""
1368	cd $source_path
1369
1370
1371	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1372	Names=$(ls -1 *.f90 2>&1)
1373	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1374	Names=$(ls -1 *.F90 2>&1)
1375	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1376	Names=$(ls -1 *.F 2>&1)
1377	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1378	Names=$(ls -1 *.f 2>&1)
1379	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1380	Names=$(ls -1 *.c 2>&1)
1381	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1382
1383
1384	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1385	for dateiname in $Filenames
1386	do
1387	if [[ -w $dateiname ]]
1388	then
1389	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1390	then
1391	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1392	source_list=$source_list"$dateiname "
1393	fi
1394	fi
1395	done
1396
1397	cd - > /dev/null
1398
1399
1400	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1401	then
1402
1403	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1404	source_list=""
1405	cd $source_path
1406
1407
1408	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1409	if [[ ! -d .svn ]]
1410	then
1411	printf "\n\n +++ source directory"
1412	printf "\n \"$source_path\" "
1413	printf "\n is not under control of \"subversion\"."
1414	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
1415	fi
1416
1417
1418	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1419	Filenames=""
1420	svn status > tmp_mrun
1421	while read line
1422	do
1423	firstc=`echo $line \| cut -c1`
1424	if [[ $firstc = M \|\| $firstc = "?" ]]
1425	then
1426	Name=`echo "$line" \| cut -c8-`
1427	extension=`echo $Name \| cut -d. -f2`
1428	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1429	then
1430	Filenames="$Filenames "$Name
1431	fi
1432	fi
1433	done < tmp_mrun
1434
1435
1436	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1437	for dateiname in $Filenames
1438	do
1439	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1440	source_list=$source_list"$dateiname "
1441	done
1442
1443	cd - > /dev/null
1444
1445
1446	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1447	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1448	# VORHANDEN
1449	elif [[ "$source_list" != "" && $restart_run != true ]]
1450	then
1451
1452	cd $source_path
1453
1454	for filename in $source_list
1455	do
1456
1457	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1458	if [[ $(print $filename \| grep -c "/") != 0 ]]
1459	then
1460	printf "\n +++ source code file: $filename"
1461	printf "\n must not contain (\"/\") "
1462	locat=source; exit
1463	fi
1464
1465	if [[ ! -f $filename ]]
1466	then
1467	printf "\n +++ source code file: $filename"
1468	printf "\n does not exist"
1469	locat=source; exit
1470	else
1471	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1472	fi
1473
1474	done
1475
1476	cd - > /dev/null
1477
1478	fi
1479
1480
1481	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1482	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1483	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1484	if [[ $restart_run != true ]]
1485	then
1486
1487	if [[ ! -f "$source_path/$mainprog" ]]
1488	then
1489	printf "\n\n +++ main program: $mainprog"
1490	printf "\n does not exist in source directory"
1491	printf "\n \"$source_path\"\n"
1492	locat=source; exit
1493	else
1494	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1495	then
1496	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1497	source_list=${mainprog}" $source_list"
1498	fi
1499	fi
1500	fi
1501
1502
1503	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1504	if [[ $restart_run != true && "$add_source_path" != "" ]]
1505	then
1506
1507	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1508	if [[ ! -d $add_source_path ]]
1509	then
1510	printf "\n\n +++ WARNING: additional source code directory"
1511	printf "\n \"$add_source_path\" "
1512	printf "\n does not exist or is not a directory."
1513	printf "\n No source code will be used from this directory!\n"
1514	add_source_path=""
1515	sleep 3
1516	else
1517
1518	cd $add_source_path
1519
1520	Names=$(ls -1 *.f90 2>&1)
1521	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1522	Names=$(ls -1 *.F90 2>&1)
1523	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1524	Names=$(ls -1 *.F 2>&1)
1525	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1526	Names=$(ls -1 *.f 2>&1)
1527	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1528	Names=$(ls -1 *.c 2>&1)
1529	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1530
1531	cd - > /dev/null
1532	cd SOURCES_FOR_RUN_$fname
1533
1534	for dateiname in $AddFilenames
1535	do
1536	if [[ -f $dateiname ]]
1537	then
1538	printf "\n +++ source code file \"$dateiname\" found in additional"
1539	printf "\n source code directory \"$add_source_path\" "
1540	printf "\n as well as in directory \"$source_path\"."
1541	locat=source; exit
1542	fi
1543
1544	cp $add_source_path/$dateiname .
1545	source_list="$source_list $dateiname"
1546
1547	# Default User-Interface von der Liste entfernen, falls Datei
1548	# ein User-Interface enthaelt
1549	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1550	then
1551	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1552	then
1553	rm -rf user_interface.f90
1554	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1555	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1556	printf "\n since a user-interface is found in file"
1557	printf "\n \"$add_source_path/$dateiname\" \n"
1558	sleep 3
1559	else
1560	printf "\n\n *** user-interface file \"$dateiname\" "
1561	printf "\n added to the files to be translated \n"
1562	sleep 3
1563	fi
1564	fi
1565	done
1566
1567	cd - > /dev/null
1568	fi
1569	fi
1570
1571
1572	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1573	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1574	if [[ $restart_run != true && -n $package_list ]]
1575	then
1576
1577	cd $source_path
1578
1579	for package in $package_list
1580	do
1581
1582	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1583
1584	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1585	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1586	# LIEFERT
1587	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1588
1589
1590	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1591	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1592	for source_list_name in $package_source_list
1593	do
1594	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1595	then
1596
1597	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1598	ending=`echo $source_list_name \| cut -f2 -d.`
1599	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1600	then
1601	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1602	source_list="$source_list $source_list_name"
1603	fi
1604	fi
1605	done
1606	done
1607
1608	cd - > /dev/null
1609	fi
1610
1611
1612	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1613	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1614	if [[ "$use_makefile" = true && "$restart_run" != true ]]
1615	then
1616	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1617	if [[ ! -f $makefile ]]
1618	then
1619	printf "\n +++ file \"$makefile\" does not exist"
1620	printf "\n provide this file or set \"use_makefile=false\" in configuration file\n"
1621	locat=make; exit
1622	else
1623	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1624	fi
1625	fi
1626
1627	fi # do_compile=true
1628
1629
1630	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1631	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1632	if [[ $do_compile = true ]]
1633	then
1634
1635	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1636	# ZUSAMMENSETZEN
1637	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1638	then
1639	PPOPTS=-Dibm=ibm
1640	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1641	then
1642	PPOPTS=-Dnec
1643	else
1644	PPOPTS=-D$localhost
1645	fi
1646	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1647	then
1648	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1=$cond1"
1649	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2=$cond2"
1650	if [[ $netcdf_support = true ]]
1651	then
1652	PPOPTS="$PPOPTS -Dnetcdf=netcdf"
1653	[[ $localhost != ibms ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit=netcdf_64bit"
1654	fi
1655	if [[ $localhost = ibmy ]]
1656	then
1657	PPOPTS="$PPOPTS -Dibmy_special=ibmy_special"
1658	fi
1659	else
1660	[[ -n $cond1 ]] && PPOPTS="$PPOPTS -D$cond1"
1661	[[ -n $cond2 ]] && PPOPTS="$PPOPTS -D$cond2"
1662	if [[ $netcdf_support = true ]]
1663	then
1664	PPOPTS="$PPOPTS -Dnetcdf"
1665	[[ $localhost != decalpha && $localhost != lctit ]] && PPOPTS="$PPOPTS -Dnetcdf_64bit"
1666	fi
1667	fi
1668	if [[ -n $package_list ]]
1669	then
1670	for package in $package_list
1671	do
1672	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1673	then
1674	if [[ $package != "dvrp_graphics+1PE" ]]
1675	then
1676	PPOPTS="$PPOPTS -D$package=$package"
1677	else
1678	PPOPTS="$PPOPTS -Ddvrp_graphics"
1679	export use_seperate_pe_for_dvrp_output=true
1680	fi
1681	else
1682	if [[ $package != "dvrp_graphics+1PE" ]]
1683	then
1684	PPOPTS="$PPOPTS -D$package"
1685	else
1686	PPOPTS="$PPOPTS -Ddvrp_graphics"
1687	export use_seperate_pe_for_dvrp_output=true
1688	fi
1689	fi
1690	done
1691	fi
1692	if [[ -n $cpp_opts ]]
1693	then
1694	for popts in $cpp_opts
1695	do
1696	PPOPTS="$PPOPTS -D$popts"
1697	done
1698	fi
1699
1700	# -D ARGUMENTEN EINEN DOPPELTEN UNTERSTRICH VORANSTELLEN
1701	PPOPTS=`echo " $PPOPTS" \| sed 's/ -D/ -D__/g'`
1702
1703	# OPTION ZUM EINSCHALTEN DES PRAEPROZESSORS HINZUFUEGEN
1704	if [[ $host = decalpha ]]
1705	then
1706	C_PPOPTS="-cpp -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION $PPOPTS"
1707	elif [[ $(echo $host \| cut -c1-3) = ibm ]]
1708	then
1709	# blanks in PPOPTS muessen durch "," ersetzt werden
1710	PPOPTS=`echo $PPOPTS \| sed 's/ -/,-/g'`
1711	C_PPOPTS="-qsuffix=cpp=f90 -WF,-DMPI_REAL=MPI_DOUBLE_PRECISION,$PPOPTS"
1712	elif [[ $host = lcmuk ]]
1713	then
1714	C_PPOPTS="$PPOPTS -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1715	elif [[ $host = lctit ]]
1716	then
1717	C_PPOPTS="$PPOPTS -Mpreprocess -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION"
1718	elif [[ $(echo $host \| cut -c1-3) = nec ]]
1719	then
1720	C_PPOPTS="-Ep -DMPI_REAL=MPI_REAL8 -DMPI_2REAL=MPI_2REAL8 -DSCFFT=dzfft -DCSFFT=zdfft $PPOPTS"
1721	else
1722	C_PPOPTS="$PPOPTS"
1723	fi
1724
1725	else
1726
1727
1728	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1729	if [[ $do_remote = false ]]
1730	then
1731	if [[ ! -f $executable ]]
1732	then
1733	printf "\n +++ executable file: $executable"
1734	printf "\n does not exist"
1735	locat=executable; exit
1736	fi
1737	fi
1738	fi
1739
1740
1741	# JOBMODUS FESTSTELLEN
1742	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1743	then
1744	jobmo=BATCH
1745	else
1746	jobmo=INTERACTIVE
1747	fi
1748
1749
1750	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1751	# DURCH BENUTZER ANDERWEITIG VEREINBART
1752	if [[ "$compiler_name" = "" ]]
1753	then
1754	case $localhost in
1755	(unics) compiler_name=f77;;
1756	(lcmuk) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1757	then
1758	compiler_name=mpif90
1759	else
1760	compiler_name=ifc
1761	fi;;
1762	(lctit) if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1763	then
1764	compiler_name=mpif90
1765	echo ">>> compiler=mpif90"
1766	else
1767	compiler_name=pgf95
1768	echo ">>> compiler=pgf95"
1769	fi;;
1770	(nech) compiler_name=sxmpif90;;
1771	(decalpha) compiler_name=f95;;
1772	(ibm\|ibmb\|ibmh\|ibms\|ibmy) compiler_name=mpxlf95_r;;
1773	(*) printf "\n +++ unknown host name: $localhost \n";
1774	locat=localhost; exit;;
1775	esac
1776	fi
1777
1778
1779	# COMPILER AUF NECK UEBERSCHREIBEN
1780	[[ $localhost = neck ]] && compiler_name=mpif90
1781
1782
1783
1784	# PRAEPROZESSOR-PFAD BESTIMMEN
1785	case $localhost in
1786	(decalpha\|ibm\|ibmb\|ibmh\|ibms\|ibmy\|unics) praeproc=cpp;;
1787	esac
1788
1789
1790	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1791	kennung=$RANDOM
1792	if [[ "$tmp_user_catalog" = "" ]]
1793	then
1794	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1795	then
1796	tmp_user_catalog=$TMPDIR
1797	elif [[ $localhost = nech ]]
1798	then
1799	tmp_user_catalog=$WRKSHR
1800	else
1801	tmp_user_catalog=/tmp
1802	fi
1803	fi
1804	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1805
1806
1807	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1808	# BESTIMMEN
1809	if [[ "$tmp_data_catalog" = "" ]]
1810	then
1811	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
1812	then
1813	tmp_data_catalog=$WORK/mrun_restart_data
1814	elif [[ $localhost = nech ]]
1815	then
1816	tmp_data_catalog=$WRKSHR/mrun_restart_data
1817	else
1818	tmp_data_catalog=/tmp/mrun_restart_data
1819	fi
1820	fi
1821
1822
1823	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1824	# ERSETZEN
1825	if [[ $do_remote = false && $do_compile = true ]]
1826	then
1827	eval fopts=\"$fopts\"
1828	eval lopts=\"$lopts\"
1829	fi
1830
1831
1832
1833	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1834	FOPTS="$fopts"
1835	LOPTS="$lopts"
1836	ROPTS="$ropts"
1837	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit ) && -n $numprocs ]]
1838	then
1839	XOPT="-X $numprocs"
1840	fi
1841
1842
1843	# BEI VERWENDUNG VON DVRP-SOFTWARE MUSS ENTSPECHENDE GRAFIK-BIBLIOTHEK
1844	# MIT EINGEBUNDEN WERDEN
1845	if [[ -n $package_list ]]
1846	then
1847	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1848	then
1849
1850	# DVRP-GRAFIK GIBT ES NUR AUF DER IBM AM HLRN, AUF NECH/NECK UND
1851	# DEM NOTEBOOK SCIROCCO
1852	if [[ $host != ibmh && $host != nech && $host != neck && $host != lcmuk && "$local_compile" != true ]]
1853	then
1854	printf "\n"
1855	printf "\n +++ option -p with package \"dvrp_graphics\" only allowed on nech and ibmh"
1856	locat=parameter; exit
1857	fi
1858	if [[ $host = ibmh ]]
1859	then
1860	if [[ $cond1 = debug \|\| $cond2 = debug ]]
1861	then
1862	FOPTS="-I/home/h/hzazchmi/lib/debug $FOPTS"
1863	LOPTS="$LOPTS -L/home/h/hzazchmi/lib/debug -lDVRP2 -lftp"
1864	else
1865	FOPTS="-I/home/h/nikevita/lib_stable/optimize $FOPTS"
1866	LOPTS="$LOPTS -L/home/h/nikevita/lib_stable/optimize -lDVRP2 -lftp"
1867	fi
1868	elif [[ $host = nech ]]
1869	then
1870	FOPTS="-I/import/ds9b/ipf2/b/b323014/lib/optimize $FOPTS"
1871	LOPTS="$LOPTS -L/import/ds9b/ipf2/b/b323014/lib/optimize -lDVRP2 -lftp"
1872	elif [[ $host = neck ]]
1873	then
1874	FOPTS="-I/home/DSRC/NC/tatuyama/pub/dvrp $FOPTS"
1875	LOPTS="$LOPTS -L/home/DSRC/NC/tatuyama/pub/dvrp -lDVRP2 -lftp"
1876	elif [[ $host = lcmuk ]]
1877	then
1878	FOPTS="-I/usr/local/lib/dvrp/optimize $FOPTS"
1879	LOPTS="$LOPTS -L/usr/local/lib/dvrp/optimize -lDVRP2 -lftp"
1880	fi
1881	fi
1882	fi
1883
1884
1885	# EVTL. EINBINDEN DER NETCDF-BIBLIOTHEK
1886	if [[ $netcdf_support = true ]]
1887	then
1888	case $host in
1889	(decalpha) FOPTS="-I${netcdf_path}/include $FOPTS"
1890	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1891	(ibmb\|ibmh) FOPTS="-I ${netcdf_path}/include-64 $FOPTS"
1892	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1893	(ibms) FOPTS="-I /applic/netcdf64/src/f90 $FOPTS"
1894	LOPTS="$LOPTS -L${netcdf_path} -lnetcdf";;
1895	(ibmy) FOPTS="-I ${netcdf_path}/include $FOPTS"
1896	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1897	(lcmuk\|nech\|neck) FOPTS="-I ${netcdf_path}/include $FOPTS"
1898	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1899	(lctit) FOPTS="-I ${netcdf_path}/include $FOPTS"
1900	LOPTS="$LOPTS -L${netcdf_path}/lib -lnetcdf";;
1901
1902	esac
1903	fi
1904
1905	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1906	# GRAMM BENOETIGT
1907	done=false
1908	while [[ $done = false ]]
1909	do
1910	cputime=$cpumax
1911	if (( $cputime == 0 ))
1912	then
1913	printf "\n +++ cpu-time is undefined"
1914	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1915	printf "\n >>> "
1916	read cputime 1>/dev/null 2>&1
1917	else
1918	done=true
1919	fi
1920	cpumax=$cputime
1921	done
1922
1923	(( minuten = cputime / 60 ))
1924	(( sekunden = cputime - minuten * 60 ))
1925
1926
1927	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1928	if [[ $do_batch = true ]]
1929	then
1930	done=false
1931	while [[ $done = false ]]
1932	do
1933	if (( memory == 0 ))
1934	then
1935	printf "\n +++ memory demand is undefined"
1936	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1937	printf "\n >>> "
1938	read memory 1>/dev/null 2>&1
1939	else
1940	done=true
1941	fi
1942	done
1943	fi
1944
1945
1946	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1947	if [[ $do_remote = true && -z $remote_username ]]
1948	then
1949	while [[ -z $remote_username ]]
1950	do
1951	printf "\n +++ username on remote host \"$host\" is undefined"
1952	printf "\n >>> Please type username:"
1953	printf "\n >>> "
1954	read remote_username
1955	done
1956	mc="$mc -u$remote_username"
1957	fi
1958
1959	###########################################################################
1960	# HEADER-AUSGABE
1961	###########################################################################
1962
1963
1964	calltime=$(date)
1965	printf "\n"
1966	# [[ $silent = false ]] && clear
1967	printf "#--------------------------------------------------------------# \n"
1968	printf "\| $version$calltime \| \n"
1969	printf "\| \| \n"
1970	spalte1="called on:"; spalte2=$localhost_realname
1971	printf "\| $spalte1$spalte2 \| \n"
1972	if [[ $local_compile = false ]]
1973	then
1974	if [[ $do_remote = true ]]
1975	then
1976	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1977	else
1978	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1979	fi
1980	else
1981	spalte1="compiling test only!"; spalte2=""
1982	fi
1983	printf "\| $spalte1$spalte2 \| \n"
1984	if [[ -n $numprocs ]]
1985	then
1986	spalte1="number of PEs:"; spalte2=$numprocs
1987	printf "\| $spalte1$spalte2 \| \n"
1988	fi
1989	if [[ -n $tasks_per_node ]]
1990	then
1991	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1992	printf "\| $spalte1$spalte2 \| \n"
1993	fi
1994	if [[ $threads_per_task != 1 ]]
1995	then
1996	spalte1="threads per task:"; spalte2="$threads_per_task"
1997	printf "\| $spalte1$spalte2 \| \n"
1998	fi
1999	printf "\| \| \n"
2000	if [[ $do_compile = true ]]
2001	then
2002	spalte1=cpp-directives:; spalte2=$C_PPOPTS
2003	printf "\| $spalte1$spalte2 \| \n"
2004	zeile=$(echo "$C_PPOPTS" \| cut -c41-)
2005	while [[ "$zeile" != "" ]]
2006	do
2007	spalte1=""
2008	spalte2=$zeile
2009	printf "\| $spalte1$spalte2 \| \n"
2010	zeile=$(echo "$zeile" \| cut -c41-)
2011	done
2012
2013	spalte1=compiler-options:; spalte2="$FOPTS $MODULE_OPTIONS"
2014	printf "\| $spalte1$spalte2 \| \n"
2015	zeile=$(echo "$FOPTS $MODULE_OPTIONS" \| cut -c41-)
2016	while [[ "$zeile" != "" ]]
2017	do
2018	spalte1=""
2019	spalte2=$zeile
2020	printf "\| $spalte1$spalte2 \| \n"
2021	zeile=$(echo "$zeile" \| cut -c41-)
2022	done
2023
2024	spalte1=linker-options:; spalte2=$LOPTS
2025	printf "\| $spalte1$spalte2 \| \n"
2026	zeile=$(echo "$LOPTS" \| cut -c41-)
2027	while [[ "$zeile" != "" ]]
2028	do
2029	spalte1=""
2030	spalte2=$zeile
2031	printf "\| $spalte1$spalte2 \| \n"
2032	zeile=$(echo "$zeile" \| cut -c41-)
2033	done
2034
2035	spalte1="main program":; spalte2=$mainprog
2036	printf "\| $spalte1$spalte2 \| \n"
2037	if [[ "$use_makefile" = true ]]
2038	then
2039	spalte1="using \"make\" for com"; spalte2="piling and linking"
2040	printf "\| $spalte1$spalte2 \| \n"
2041	fi
2042	# if [[ $vtk_graphics = true ]]
2043	# then
2044	# spalte1=""; spalte2="wird in C++ - Programm eingebunden (vtk)"
2045	# printf "\| $spalte1$spalte2 \| \n"
2046	# fi
2047	else
2048	spalte1=executable:; spalte2=$executable
2049	printf "\| $spalte1$spalte2 \| \n"
2050	fi
2051	printf "\| \| \n"
2052	spalte1="base name of files":; spalte2=$fname
2053	printf "\| $spalte1$spalte2 \| \n"
2054	if [[ $fname != $afname ]]
2055	then
2056	spalte1="base name of input files":; spalte2=$afname
2057	printf "\| $spalte1$spalte2 \| \n"
2058	fi
2059	spalte1="INPUT control list":; spalte2=$input_list
2060	printf "\| $spalte1$spalte2 \| \n"
2061	spalte1="OUTPUT control list":; spalte2=$output_list
2062	printf "\| $spalte1$spalte2 \| \n"
2063
2064	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2065	then
2066	spalte1="memory demand / PE":; spalte2="$memory MB"
2067	printf "\| $spalte1$spalte2 \| \n"
2068	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2069	printf "\| $spalte1$spalte2 \| \n"
2070	fi
2071
2072	if [[ $do_compile = true ]]
2073	then
2074	printf "\| \| \n"
2075	printf "\| Files to be compiled: \| \n"
2076	zeile=$source_list
2077	while [[ "$zeile" != "" ]]
2078	do
2079	spalte3=$zeile
2080	printf "\| $spalte3 \| \n"
2081	zeile=$(echo "$zeile" \| cut -c61-)
2082	done
2083	fi
2084	printf "#--------------------------------------------------------------#"
2085
2086
2087
2088	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2089	if [[ $do_trace = true ]]
2090	then
2091	(( i = 0 ))
2092	while (( i < iin ))
2093	do
2094	(( i = i + 1 ))
2095	if (( i == 1 ))
2096	then
2097	printf "\n\n >>> INPUT-file assignments:\n"
2098	fi
2099	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2100	done
2101	(( i = 0 ))
2102	while (( i < iout ))
2103	do
2104	(( i = i + 1 ))
2105	if (( i == 1 ))
2106	then
2107	printf "\n\n >>> OUTPUT-file assignments:\n"
2108	fi
2109	printf "\n ${localout[$i]} : ${pathout[$i]}"
2110	done
2111	(( i = 0 ))
2112	while (( i < iic ))
2113	do
2114	(( i = i + 1 ))
2115	if (( i == 1 ))
2116	then
2117	printf "\n\n >>> INPUT-commands:\n"
2118	fi
2119	printf "\n ${in_command[$i]}"
2120	done
2121	(( i = 0 ))
2122	while (( i < ioc ))
2123	do
2124	(( i = i + 1 ))
2125	if (( i == 1 ))
2126	then
2127	printf "\n\n >>> OUTPUT-commands:\n"
2128	fi
2129	printf "\n ${out_command[$i]}"
2130	done
2131	fi
2132
2133
2134	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2135	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2136	then
2137	antwort=dummy
2138	printf "\n\n"
2139	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2140	do
2141	printf " >>> everything o.k. (y/n) ? "
2142	read antwort
2143	done
2144	if [[ $antwort = n \|\| $antwort = N ]]
2145	then
2146	locat=user_abort; (( iec = 0 )); exit
2147	fi
2148	if [[ $do_batch = true ]]
2149	then
2150	printf " >>> batch-job will be created and submitted"
2151	else
2152	if [[ $local_compile = false ]]
2153	then
2154	printf " >>> MRUN will now continue to execute on this machine"
2155	else
2156	printf " >>> a test compilation will now be carried out on this machine"
2157	fi
2158	fi
2159	fi
2160
2161
2162
2163
2164	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2165	# CHENDE AKTIONEN DURCHGEFUEHRT
2166	if [[ $do_batch = false ]]
2167	then
2168
2169
2170	# TEMPORAEREN KATALOG ERZEUGEN
2171	mkdir -p $TEMPDIR
2172	chmod go+rx $TEMPDIR
2173	tmpcreate=true
2174
2175
2176	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2177	# TEMPORAERES VERZEICHNIS KOPIEREN
2178	if [[ $do_compile = true ]]
2179	then
2180
2181	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2182	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2183	if [[ $localhost = nech ]]
2184	then
2185	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2186	if mkdir -p $TEMPDIR_COMPILE
2187	then
2188	printf "\n *** \"$TEMPDIR_COMPILE\" "
2189	printf "\n is generated as temporary directory for cross compiling\n"
2190	else
2191	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2192	printf "\n needed for cross compilation failed"
2193	locat=compile
2194	exit
2195	fi
2196	else
2197	TEMPDIR_COMPILE=$TEMPDIR
2198	fi
2199
2200	if [[ "$use_makefile" = true ]]
2201	then
2202
2203	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2204	line=""
2205	grep "%depository_path" $config_file > tmp_mrun
2206	while read line
2207	do
2208	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2209	then
2210	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2211	then
2212	global_depository_path=`echo $line \| cut -d" " -s -f2`
2213	fi
2214	fi
2215	done < tmp_mrun
2216
2217	line=""
2218	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2219	while read line
2220	do
2221	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2222	then
2223	local_depository_path=`echo $line \| cut -d" " -s -f2`
2224	fi
2225	done < tmp_mrun
2226
2227	if [[ "$local_depository_path" = "" ]]
2228	then
2229	if [[ "$global_depository_path" != "" ]]
2230	then
2231	local_depository_path=$global_depository_path
2232	else
2233	printf "\n\n +++ no depository path found in configuration file"
2234	printf "\n for local host \"$localhost\" "
2235	printf "\n please set \"\%depository_path\" in configuration file\n"
2236	locat=config_file; exit
2237	fi
2238	fi
2239	eval local_depository_path=$local_depository_path
2240
2241	basename=`print $mainprog \| cut -f1 -d"."`
2242	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2243	if [[ ! -f $make_depository ]]
2244	then
2245	printf "\n"
2246	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2247	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2248	else
2249	cp $make_depository $TEMPDIR_COMPILE
2250	cd $TEMPDIR_COMPILE
2251	tar -xf $make_depository > /dev/null 2>&1
2252	cd - > /dev/null
2253	fi
2254
2255	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2256
2257	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2258	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2259	# MAKEFILE EINTRAGEN
2260	cd $TEMPDIR_COMPILE
2261	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2262	if [[ "$interface_file" != "" ]]
2263	then
2264	interface_file=`echo $interface_file \| cut -d"." -f1`
2265	mv Makefile Makefile_old
2266	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2267	fi
2268	cd - > /dev/null
2269	fi
2270	else
2271	cp $executable ${TEMPDIR}/a.out
2272	fi
2273
2274
2275	# WECHSEL IN TEMPORAEREN KATALOG
2276	cd $TEMPDIR
2277	printf "\n *** changed to temporary directory: $TEMPDIR"
2278
2279
2280	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2281	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2282	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2283	# ERMITTELN
2284	(( i = 0 ))
2285	while (( i < iout ))
2286	do
2287	(( i = i + 1 ))
2288	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2289	then
2290	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2291	else
2292	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2293	fi
2294	done
2295
2296
2297	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2298	if [[ $do_compile = true ]]
2299	then
2300
2301
2302	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2303	if [[ "$use_makefile" = true ]]
2304	then
2305	printf "\n\n\n *** compilation starts \n$striche\n"
2306	printf " *** compilation with make using following options:\n"
2307	printf " compilername: $compiler_name\n"
2308	printf " options: $FOPTS\n"
2309	printf " preprocessor-directives: $C_PPOPTS \n"
2310	printf " linker-options: $LOPTS \n"
2311	printf " source code files: $source_list \n"
2312
2313	if [[ $localhost = nech ]]
2314	then
2315	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$C_PPOPTS\" F90FLAGS=\"$FOPTS\" LDFLAGS=\"$LOPTS\" "
2316	cp $TEMPDIR_COMPILE/a.out .
2317	[[ $? != 0 ]] && compile_error=true
2318	rm -rf $TEMPDIR_COMPILE
2319	else
2320	make -f Makefile PROG=a.out F90=$compiler_name COPT="$C_PPOPTS" F90FLAGS="$FOPTS" LDFLAGS="$LOPTS"
2321	fi
2322
2323	# UEBERSETZUNG "VON HAND" (OHNE MAKE)
2324	else
2325
2326
2327	# UEBERSETZUNG DER QUELLTEXT-DATEIEN UND DES HAUPTPROGRAMMS
2328	# $CPPOPTS FUER CPP-PRAEPROZESSOR WURDEN OBEN BESTIMMT
2329	printf "\n\n\n *** compilation starts \n$striche\n"
2330
2331
2332	# VORWEG EVTL. UEBERSETZUNG VON PROGRAMMTEILEN MIT SPEZIELLEN
2333	# COMPILERN UND/ODER COMPILEROPTIONEN. DIESE WERDEN BEI DER SPAETEREN
2334	# EIGENTLICHEN UEBERSETZUNG ALS OBJECT-FILES EINGEBUNDEN
2335	new_source_list=""
2336	for filename in $source_list
2337	do
2338
2339	basename=`print $filename \| cut -f1 -d"."`
2340
2341	# EVTL. SPEZIELLEN COMPILER FUER UP BESTIMMEN
2342	comp_var=$(eval echo \$comp_$basename) # \$ liefert evtl. fuer source alternativ vereinbarten Compiler
2343	comp_opt_var=$(eval echo \$$basename) # \$$ liefert evtl. fuer source vereinbarte Compiler-Environment-Variable
2344
2345	if [[ "$comp_var" = "" && "$comp_opt_var" = "" ]]
2346	then
2347	new_source_list="$new_source_list "$filename
2348	else
2349
2350	if [[ "$comp_var" = "" ]]
2351	then
2352	SPECIAL_COMPILER=$compiler_name
2353	else
2354	SPECIAL_COMPILER=$comp_var
2355	fi
2356
2357	if [[ "$comp_opt_var" = "" ]]
2358	then
2359	SPECIAL_FOPTS=$FOPTS
2360	else
2361	SPECIAL_FOPTS="$parallel_options $(eval echo \$$comp_opt_var)"
2362	fi
2363
2364	printf " *** compiling of $filename with special compiler call: $SPECIAL_COMPILER $CPPOPTS -c $SPECIAL_FOPTS \n"
2365	$SPECIAL_COMPILER $C_PPOPTS -c $SPECIAL_FOPTS $MODULE_OPTIONS $filename
2366	if [[ $? != 0 ]]
2367	then
2368	printf "\n +++ compiling error occured"
2369	locat=compile
2370	exit
2371	fi
2372	new_source_list="$new_source_list "${basename}.o
2373	fi
2374	done
2375	source_list="$new_source_list"
2376
2377
2378	# EIGENTLICHE UEBERSETZUNG MIT DEN NORMALEN OPTIONEN
2379	printf " *** compilation with standard options: $compiler_name $FOPTS $MODULE_OPTIONS \n"
2380	printf " preprocessor-directives: $C_PPOPTS \n"
2381	printf " linker-options: $LOPTS \n"
2382	printf " source code files: $source_list \n"
2383
2384	$compiler_name $C_PPOPTS $FOPTS $MODULE_OPTIONS $LOPTS $source_list
2385
2386	fi
2387	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2388	then
2389	printf "\n +++ error occured while compiling or linking"
2390	locat=compile
2391	exit
2392	else
2393	printf "$striche\n *** compilation finished \n"
2394	fi
2395	fi
2396
2397
2398	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2399	if [[ $local_compile = true ]]
2400	then
2401	cd $HOME
2402	rm -rf $TEMPDIR
2403	locat=local_compile; exit
2404	fi
2405
2406
2407	# BEREITSTELLEN DER INPUT-DATEIEN
2408	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2409	(( i = 0 ))
2410	while (( i < iin ))
2411	do
2412	(( i = i + 1 ))
2413	if (( i == 1 ))
2414	then
2415	printf "\n\n *** providing INPUT-files:\n$striche"
2416	fi
2417
2418
2419	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2420	if [[ "${transin[$i]}" = unavailable ]]
2421	then
2422	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2423	then
2424	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2425	printf "\n is not available!"
2426	else
2427	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2428	printf "\n is not available!"
2429	fi
2430	continue
2431	fi
2432
2433	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2434	files_for_pes=false; datentyp=file
2435	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2436	then
2437	files_for_pes=true; datentyp=directory
2438	actionin[$i]=""
2439	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2440	then
2441	actionin[$i]=""
2442	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2443	then
2444	files_for_pes=true; datentyp=directory
2445	actionin[$i]="ar"
2446	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2447	then
2448	actionin[$i]="ar"
2449	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2450	then
2451	files_for_pes=true; datentyp=directory
2452	actionin[$i]="fl"
2453	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2454	then
2455	actionin[$i]="fl"
2456	fi
2457
2458	if [[ $files_for_pes = true ]]
2459	then
2460	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2461	else
2462	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2463	fi
2464
2465	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2466	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2467	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2468	# SERVER ZU HOLEN
2469	if [[ "${actionin[$i]}" = fl ]]
2470	then
2471	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2472	if [[ $files_for_pes = false ]]
2473	then
2474	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2475	then
2476	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2477	got_tmp[$i]=true
2478	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2479	then
2480	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2481	printf "\n *** trying to use backup copy in \"$WORK\" "
2482	cp $WORK/${frelin[$i]} ${localin[$i]}
2483	else
2484	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2485	printf "\n or \"$tmp_data_catalog\" does not exist!"
2486	printf "\n *** trying to get copy from archive"
2487	actionin[$i]=ar
2488	fi
2489	else
2490	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2491	then
2492	mkdir ${localin[$i]}
2493	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
2494	got_tmp[$i]=true
2495	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2496	then
2497	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2498	printf "\n *** trying to use backup copy in \"$WORK\" "
2499	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2500	else
2501	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2502	printf "\n or \"$tmp_data_catalog\" does not exist!"
2503	printf "\n *** trying to get copy from archive"
2504	actionin[$i]=ar
2505	fi
2506	fi
2507	fi
2508
2509
2510	# DATEI LIEGT AUF ARCHIV-SERVER
2511	if [[ "${actionin[$i]}" = ar ]]
2512	then
2513
2514	if [[ $files_for_pes = false ]]
2515	then
2516	printf "\n file will be restored from archive-system ($archive_system)!"
2517	else
2518	printf "\n directory will be restored from archive-system ($archive_system)!"
2519	fi
2520
2521	file_restored=false
2522
2523	if [[ $archive_system = asterix ]]
2524	then
2525	do_stagein=true
2526	(( stagein_anz = 0 ))
2527	while [[ $do_stagein = true ]]
2528	do
2529	if [[ $files_for_pes = false ]]
2530	then
2531	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2532	else
2533	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2534	fi
2535	cat STAGEIN_OUTPUT
2536	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2537	then
2538	file_restored=true
2539	do_stagein=false
2540	else
2541	(( stagein_anz = stagein_anz + 1 ))
2542	if (( stagein_anz == 10 ))
2543	then
2544	printf "\n +++ stagein stoped after 10 tries"
2545	locat=stage
2546	exit
2547	fi
2548	printf "\n +++ restoring from archive failed, trying again:"
2549	sleep 900
2550	fi
2551	done
2552	elif [[ $archive_system = DMF ]]
2553	then
2554	if [[ $files_for_pes = false ]]
2555	then
2556	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2557	locat=DMF
2558	exit
2559	else
2560	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2561	cp -r $ARCHIVE/${frelin[$i]} $PWD
2562	file_restored=true
2563	fi
2564	elif [[ $archive_system = tivoli ]]
2565	then
2566	if [[ $files_for_pes = false ]]
2567	then
2568	if [[ $localhost = ibmh ]]
2569	then
2570	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2571	else
2572	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2573	fi
2574	else
2575	(( inode = 0 ))
2576	while (( inode < nodes ))
2577	do
2578	if [[ $localhost = ibmh ]]
2579	then
2580	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2581	else
2582	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2583	fi
2584	(( inode = inode + 1 ))
2585	done
2586	fi
2587	file_restored=true
2588	elif [[ $archive_system = ut ]]
2589	then
2590	if [[ $files_for_pes = false ]]
2591	then
2592	cp $UT/${frelin[$i]} .
2593	else
2594	(( inode = 0 ))
2595	while (( inode < nodes ))
2596	do
2597	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2598	(( inode = inode + 1 ))
2599	done
2600	fi
2601	file_restored=true
2602	else
2603	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2604	locat=rearchive
2605	exit
2606	fi
2607
2608	if [[ $file_restored = true ]]
2609	then
2610
2611	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2612	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2613	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2614	if [[ $files_for_pes = false ]]
2615	then
2616	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2617	else
2618	mkdir $tmp_data_catalog/${frelin[$i]}
2619	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2620	fi
2621	got_tmp[$i]=true
2622
2623	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2624	mv ${frelin[$i]} ${localin[$i]}
2625
2626	fi
2627	fi
2628
2629
2630	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2631	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2632	then
2633
2634	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2635	then
2636
2637	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2638	printf "\n file will be provided for $numprocs processors"
2639	mkdir ${localin[$i]}
2640	ival=$numprocs
2641	(( ii = 0 ))
2642	while (( ii <= ival-1 ))
2643	do
2644	if (( ii < 10 ))
2645	then
2646	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2647	elif (( ii < 100 ))
2648	then
2649	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2650	elif (( ii < 1000 ))
2651	then
2652	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2653	else
2654	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2655	fi
2656	(( ii = ii + 1 ))
2657	done
2658
2659	else
2660
2661	if [[ $files_for_pes = true ]]
2662	then
2663
2664	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2665	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2666	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2667	# PER MOVE UMBENANNT WERDEN
2668	printf "\n providing $numprocs files for the respective processors"
2669	mkdir ${localin[$i]}
2670	cp -r ${absnamein[$i]}/* ${localin[$i]}
2671
2672	else
2673	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2674	cp ${absnamein[$i]} ${localin[$i]}
2675	fi
2676	fi
2677	fi
2678
2679	done
2680	if (( i != 0 ))
2681	then
2682	printf "\n$striche\n *** all INPUT-files provided \n"
2683	fi
2684
2685
2686	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2687	# LESEN VON PALM)
2688	cat > ENVPAR << %%END%%
2689	&envpar run_identifier = '$fname', host = '$localhost',
2690	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2691	maximum_cpu_time_allowed = ${cpumax}. /
2692
2693	%%END%%
2694
2695
2696	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2697	(( i = 0 ))
2698	while (( i < iic ))
2699	do
2700	(( i = i + 1 ))
2701	if (( i == 1 ))
2702	then
2703	printf "\n\n *** execution of INPUT-commands:\n$striche"
2704	fi
2705	printf "\n >>> ${in_command[$i]}"
2706	eval ${in_command[$i]}
2707	if (( i == iic ))
2708	then
2709	printf "\n$striche\n"
2710	fi
2711	done
2712
2713
2714	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2715	cpurest=${cpumax}.
2716
2717
2718	# PROGRAMMSTART
2719	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2720	PATH=$PATH:$TEMPDIR
2721
2722	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2723	then
2724	if [[ "$ENVIRONMENT" = BATCH ]]
2725	then
2726	printf "\n +++ debug is allowed in interactive mode only"
2727	locat=debug
2728	exit
2729	fi
2730	if [[ $localhost = decalpha ]]
2731	then
2732	dxladebug a.out
2733	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2734	then
2735
2736	# SETUP THE IBM MPI ENVIRONMENT
2737	export MP_SHARED_MEMORY=yes
2738	export AIXTHREADS_SCOPE=S
2739	export OMP_NUM_THREADS=$threads_per_task
2740	export AUTHSTATE=files
2741	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2742
2743	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2744	export MP_ADAPTER_USE=shared
2745	export MP_CPU_USE=multiple
2746	export MP_TIMEOUT=1200
2747
2748	unset MP_TASK_AFFINITY
2749
2750	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2751	#(( ii = 1 ))
2752	#while (( ii <= $numprocs ))
2753	#do
2754	# echo $localhost_realname >> hostfile
2755	# (( ii = ii + 1 ))
2756	#done
2757	#export MP_HOSTFILE=hostfile
2758
2759	if [[ "$LOADLBATCH" = yes ]]
2760	then
2761	totalview poe a.out $ROPTS
2762	else
2763	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2764	export TVDSVRLAUNCHCMD=ssh
2765	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2766	fi
2767	else
2768	printf "\n +++ no debug available on \"$localhost\" "
2769	printf "\n or not implemented in mrun so far"
2770	locat=debug
2771	exit
2772	fi
2773	else
2774	if [[ -n $numprocs ]]
2775	then
2776
2777	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2778	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2779	then
2780	# SETUP THE IBM MPI ENVIRONMENT
2781	export MP_SHARED_MEMORY=yes
2782	export AIXTHREAD_SCOPE=S
2783	export OMP_NUM_THREADS=$threads_per_task
2784	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2785	export AUTHSTATE=files
2786	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2787	# export MP_PRINTENV=yes
2788
2789	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2790	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2791	export MP_WAIT_MODE=poll
2792	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2793	# export MP_EAGER_LIMIT=65535
2794
2795	# # TESTWEISE FUER TURBOMPI (JAN 05)
2796	# export MPJ_MTAB=128
2797	# export MPJ_ALLTOALL=1
2798	# export MPJ_ALLTOALLV=1
2799
2800	if [[ "$LOADLBATCH" = yes ]]
2801	then
2802	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2803	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2804	then
2805	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS > aout_output 2>&1
2806	else
2807	poe ./a.out $ROPTS > aout_output 2>&1
2808	fi
2809	else
2810	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
2811	then
2812	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS > aout_output 2>&1
2813	elif [[ $localhost = ibmy ]]
2814	then
2815	if [[ -f $hostfile ]]
2816	then
2817	cp $hostfile hostfile
2818	else
2819	(( ii = 1 ))
2820	while (( ii <= $numprocs ))
2821	do
2822	echo $localhost_realname >> hostfile
2823	(( ii = ii + 1 ))
2824	done
2825	fi
2826	export MP_HOSTFILE=hostfile
2827	./a.out -procs $tasks_per_node $ROPTS > aout_output 2>&1
2828	else
2829	if [[ "$host_file" = "" ]]
2830	then
2831	printf "\n +++ no hostfile given in configuration file"
2832	locat=config_file
2833	exit
2834	else
2835	eval host_file=$host_file
2836	fi
2837	export MP_HOSTFILE=$host_file
2838	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS > aout_output 2>&1
2839	fi
2840	fi
2841	elif [[ $host = nech \|\| $host = neck ]]
2842	then
2843	(( ii = nodes ))
2844	if [[ $ii = 1 ]]
2845	then
2846	export F_ERRCNT=0 # acceptable number of errors before program is stopped
2847	export MPIPROGINF=YES
2848	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
2849	echo "*** execution on single node with mpirun"
2850	mpirun -np $numprocs ./a.out $ROPTS > aout_output 2>&1
2851	else
2852	(( i = 0 ))
2853	while (( i < ii ))
2854	do
2855	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
2856	(( i = i + 1 ))
2857	done
2858
2859	echo "#!/bin/sh" > mpi_exec_shell
2860	echo " " >> mpi_exec_shell
2861	echo "set -u" >> mpi_exec_shell
2862	echo "F_ERRCNT=0" >> mpi_exec_shell
2863	echo "MPIPROGINV=YES" >> mpi_exec_shell
2864	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
2865	echo "cpurest=$cpurest" >> mpi_exec_shell
2866	echo "fname=$fname" >> mpi_exec_shell
2867	echo "localhost=$localhost" >> mpi_exec_shell
2868	echo "return_addres=$return_addres" >> mpi_exec_shell
2869	echo "return_username=$return_username" >> mpi_exec_shell
2870	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
2871	echo "write_binary=$write_binary" >> mpi_exec_shell
2872	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2873	echo " " >> mpi_exec_shell
2874	echo "export F_ERRCNT" >> mpi_exec_shell
2875	echo "export MPIPROGINV" >> mpi_exec_shell
2876	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
2877	echo "export cpurest" >> mpi_exec_shell
2878	echo "export fname" >> mpi_exec_shell
2879	echo "export localhost" >> mpi_exec_shell
2880	echo "export return_addres" >> mpi_exec_shell
2881	echo "export return_username" >> mpi_exec_shell
2882	echo "export tasks_per_node" >> mpi_exec_shell
2883	echo "export write_binary" >> mpi_exec_shell
2884	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
2885	echo " " >> mpi_exec_shell
2886	echo "exec ./a.out > aout_output 2>&1" >> mpi_exec_shell
2887
2888	chmod u+x mpi_exec_shell
2889	export MPIPROGINF=YES
2890	mpirun -f multinode_config &
2891	wait
2892
2893	fi
2894	elif [[ $host = lcmuk ]]
2895	then
2896
2897	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
2898	# DOES NOT EXIST
2899	if [[ -f $hostfile ]]
2900	then
2901	cp $hostfile hostfile
2902	else
2903	(( ii = 1 ))
2904	while (( ii <= $numprocs / $threads_per_task ))
2905	do
2906	echo $localhost_realname >> hostfile
2907	(( ii = ii + 1 ))
2908	done
2909	fi
2910	(( ii = $numprocs / $threads_per_task ))
2911	eval zeile=\"`head -n $ii hostfile`\"
2912	printf "\n *** running on: $zeile"
2913	export OMP_NUM_THREADS=$threads_per_task
2914	if [[ $threads_per_task != 1 ]]
2915	then
2916	printf "\n threads per task: $threads_per_task"
2917	fi
2918	printf "\n\n"
2919	if [[ $scirocco = true ]]
2920	then
2921	mpiexec -machinefile hostfile -n $ii a.out $ROPTS > aout_output 2>&1
2922	else
2923	mpirun -machinefile hostfile -np $ii a.out $ROPTS > aout_output 2>&1
2924	fi
2925	elif [[ $host = decalpha ]]
2926	then
2927	dmpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2928	elif [[ $host = lctit ]]
2929	then
2930	export runfile=runfile.$kennung
2931
2932	echo "cd $PWD" > $runfile
2933	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
2934	echo "export cpurest=$cpurest" >> $runfile
2935	echo "export fname=$fname" >> $runfile
2936	echo "export localhost=$localhost" >> $runfile
2937	echo "export return_addres=$return_addres" >> $runfile
2938	echo "export return_username=$return_username" >> $runfile
2939	echo "export tasks_per_node=$tasks_per_node" >> $runfile
2940	echo "export write_binary=$write_binary" >> $runfile
2941	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
2942	echo "./a.out" >> $runfile
2943	chmod u+x $runfile
2944
2945	if [[ "$QUEUE" = interactive ]]
2946	then
2947	mpirun -np $numprocs a.out $ROPTS > aout_output 2>&1
2948	else
2949	n1ge -fore -mpi $numprocs -q $queue a.out $ROPTS > aout_output 2>&1
2950	fi
2951
2952	rm $runfile
2953	else
2954	mpprun -n $numprocs a.out $ROPTS > aout_output 2>&1
2955	fi
2956	[[ $? != 0 ]] && execution_error=true
2957
2958
2959	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
2960	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
2961	then
2962	apprentice
2963	fi
2964	else
2965	a.out $ROPTS > aout_output 2>&1
2966	fi
2967	fi
2968	if [[ $? != 0 \|\| $execution_error = true ]]
2969	then
2970
2971	# ABBRUCH BEI LAUFZEITFEHLER
2972	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2973	printf "\n +++ runtime error occured"
2974	locat=execution
2975	exit
2976	else
2977	[[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output
2978	printf "\n$striche\n *** execution finished \n"
2979	fi
2980
2981
2982
2983	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
2984	(( i = 0 ))
2985	while (( i < ioc ))
2986	do
2987	(( i = i + 1 ))
2988	if (( i == 1 ))
2989	then
2990	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
2991	fi
2992	printf "\n >>> ${out_command[$i]}"
2993	eval ${out_command[$i]}
2994	if (( i == ioc ))
2995	then
2996	printf "\n$striche\n"
2997	fi
2998	done
2999
3000
3001	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3002	if [[ $do_trace = true ]]
3003	then
3004	printf "\n\n"
3005	ls -al
3006	fi
3007
3008
3009
3010	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3011	(( i = 0 ))
3012	while (( i < iout ))
3013	do
3014	(( i = i + 1 ))
3015	if (( i == 1 ))
3016	then
3017	printf "\n\n *** saving OUTPUT-files:\n$striche"
3018	fi
3019
3020	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3021	files_for_pes=false; filetyp=file
3022	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3023	then
3024	files_for_pes=true; filetyp=directory
3025	actionout[$i]=""
3026	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3027	then
3028	actionout[$i]=""
3029	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3030	then
3031	files_for_pes=true; filetyp=directory
3032	actionout[$i]="ar"
3033	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3034	then
3035	actionout[$i]="ar"
3036	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3037	then
3038	files_for_pes=true; filetyp=directory
3039	actionout[$i]="fl"
3040	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3041	then
3042	actionout[$i]="fl"
3043	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3044	then
3045	files_for_pes=true; filetyp=directory
3046	actionout[$i]="tr"
3047	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3048	then
3049	actionout[$i]="tr"
3050	fi
3051
3052	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3053	then
3054	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3055	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
3056	then
3057	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3058	else
3059
3060
3061	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3062	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3063	# REMOTE-RECHNUNGEN
3064	if [[ "${actionout[$i]}" = tr ]]
3065	then
3066	if [[ $localhost != $fromhost ]]
3067	then
3068	if [[ $files_for_pes = false ]]
3069	then
3070	cps=""
3071	cst=""
3072	else
3073	cps=-c
3074	cst="/"
3075	fi
3076	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3077	then
3078
3079	# TRANSFER IN EIGENSTAENDIGEM JOB
3080	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3081	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3082	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3083	if [[ $files_for_pes = false ]]
3084	then
3085	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3086	else
3087	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3088	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3089	fi
3090
3091	echo "set -x" > transfer_${localout[$i]}
3092	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3093	if [[ $filetransfer_protocol = ftp ]]
3094	then
3095	if [[ $files_for_pes = true ]]
3096	then
3097	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3098	fi
3099	printf "\n >>> OUTPUT: ${localout[$i]} by FTP in seperate job to"
3100	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3101	printf "\n or higher cycle\n"
3102	echo "ftpcopy -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3103	else
3104	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3105	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3106	printf "\n or higher cycle\n"
3107	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3108	fi
3109	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3110
3111	if [[ $localhost = nech ]]
3112	then
3113	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3114	else
3115	if [[ "$LOGNAME" = b323013 ]]
3116	then
3117	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3118	else
3119	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3120	fi
3121	fi
3122
3123	else
3124
3125	# TRANSFER INNERHALB DIESES JOBS
3126	transfer_failed=false
3127	if [[ $filetransfer_protocol = ftp ]]
3128	then
3129	if [[ $files_for_pes = true ]]
3130	then
3131	printf "\n +++ WARNING: no transfer of catalogs via ftpcopy\n"
3132	fi
3133	printf "\n >>> OUTPUT: ${localout[$i]} by FTP to"
3134	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3135	ftpcopy -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3136	[[ $? != 0 ]] && transfer_failed=true
3137	else
3138	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3139	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3140	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3141	[[ $? != 0 ]] && transfer_failed=true
3142	fi
3143
3144	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3145	# LOKALER MASCHINE ANLEGEN
3146	if [[ $transfer_failed = true ]]
3147	then
3148	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3149	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3150
3151	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3152	# ANLEGEN.
3153	eval local_catalog=${pathout[$i]}
3154	if [[ ! -d $local_catalog ]]
3155	then
3156	printf " *** local directory does not exist. Trying to create:\n"
3157	printf " $local_catalog \n"
3158	mkdir -p $local_catalog
3159	fi
3160	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3161	transfer_problems=true
3162	fi
3163	fi
3164	else
3165
3166	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3167	actionout[$i]=""
3168	fi
3169	fi
3170
3171
3172	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3173	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3174	# REMOTE-RECHNUNGEN
3175	if [[ "${actionout[$i]}" = tra ]]
3176	then
3177	if [[ $localhost != $fromhost ]]
3178	then
3179	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3180	then
3181
3182	# TRANSFER IN EIGENSTAENDIGEM JOB
3183	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3184	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3185	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3186	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3187
3188	echo "set -x" > transfer_${localout[$i]}
3189	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3190	if [[ $filetransfer_protocol = ftp ]]
3191	then
3192	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP in seperate job to"
3193	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3194	printf "\n or higher cycle\n"
3195	echo "ftpcopy -A -b -m $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3196	else
3197	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3198	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3199	printf "\n or higher cycle\n"
3200	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3201	fi
3202	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3203
3204	if [[ $localhost = nech ]]
3205	then
3206	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3207	else
3208	if [[ $LOGNAME = b323013 ]]
3209	then
3210	subjob -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3211	else
3212	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -f $filetransfer_protocol transfer_${localout[$i]}
3213	fi
3214	fi
3215
3216	else
3217
3218	# TRANSFER INNERHALB DIESES JOBS
3219	transfer_failed=false
3220	if [[ $filetransfer_protocol = ftp ]]
3221	then
3222	printf "\n >>> OUTPUT: ${localout[$i]} append by FTP to"
3223	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3224	ftpcopy -A -b -m $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3225	[[ $? != 0 ]] && transfer_failed=true
3226	else
3227	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3228	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3229	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3230	[[ $? != 0 ]] && transfer_failed=true
3231	fi
3232
3233	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3234	# LOKALER MASCHINE ANLEGEN
3235	if [[ $transfer_failed = true ]]
3236	then
3237	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3238	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3239
3240	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3241	# ANLEGEN
3242	eval local_catalog=${pathout[$i]}
3243	if [[ ! -d $local_catalog ]]
3244	then
3245	printf " *** local directory does not exist. Trying to create:\n"
3246	printf " $local_catalog \n"
3247	mkdir -p $local_catalog
3248	fi
3249
3250	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3251	transfer_problems=true
3252	fi
3253	fi
3254	else
3255
3256	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3257	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3258	actionout[$i]=a
3259	fi
3260	fi
3261
3262
3263	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3264	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3265	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3266	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3267	if [[ "${actionout[$i]}" = fl ]]
3268	then
3269	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3270	chmod g+rx $tmp_data_catalog
3271	if [[ $files_for_pes = false ]]
3272	then
3273	printf "\n >>> OUTPUT: ${localout[$i]} to"
3274	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3275	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3276	else
3277	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3278	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3279	mkdir $tmp_data_catalog/${frelout[$i]}
3280	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3281	fi
3282
3283
3284	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3285	if [[ $store_on_archive_system = true ]]
3286	then
3287
3288	if [[ $archive_system = asterix ]]
3289	then
3290	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3291	if [[ $files_for_pes = false ]]
3292	then
3293	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3294	else
3295	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3296	fi
3297	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3298	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3299	echo "then" >> archive_${frelout[$i]}
3300	echo " do_stageout=false" >> archive_${frelout[$i]}
3301	echo "else" >> archive_${frelout[$i]}
3302	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3303	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3304	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3305	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3306	if [[ $files_for_pes = false ]]
3307	then
3308	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3309	else
3310	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3311	fi
3312	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3313	echo "fi" >> archive_${frelout[$i]}
3314	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3315	elif [[ $archive_system = DMF ]]
3316	then
3317	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3318	if [[ $files_for_pes = false ]]
3319	then
3320	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3321	locat=DMF
3322	exit
3323	else
3324	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3325	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3326	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3327	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3328	fi
3329	elif [[ $archive_system = tivoli ]]
3330	then
3331	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3332	if [[ $files_for_pes = false ]]
3333	then
3334	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3335	echo "set -x" >> archive_${frelout[$i]}
3336	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3337	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3338	else
3339
3340	echo "set -x" >> archive_${frelout[$i]}
3341	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3342	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3343	cd $tmp_data_catalog
3344	all_files=`ls -1 ${frelout[$i]}/*`
3345	cd - > /dev/null
3346	(( inode = 0 ))
3347	(( tp1 = tasks_per_node + 1 ))
3348	while (( inode < nodes ))
3349	do
3350	# echo "*** all_files = \"$all_files\" "
3351	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3352	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3353	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3354	# echo "*** files = \"$files\" "
3355	# echo "*** all_files = \"$all_files\" "
3356	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3357	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3358	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3359	(( inode = inode + 1 ))
3360	done
3361	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3362	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3363	fi
3364	elif [[ $archive_system = ut ]]
3365	then
3366	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3367	if [[ $files_for_pes = false ]]
3368	then
3369	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3370	echo "set -x" >> archive_${frelout[$i]}
3371	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3372	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3373	else
3374
3375	echo "set -x" >> archive_${frelout[$i]}
3376	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3377	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3378	cd $tmp_data_catalog
3379	all_files=`ls -1 ${frelout[$i]}/*`
3380	cd - > /dev/null
3381	(( inode = 0 ))
3382	(( tp1 = tasks_per_node + 1 ))
3383	while (( inode < nodes ))
3384	do
3385	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3386	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3387	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3388	(( inode = inode + 1 ))
3389	done
3390	fi
3391	elif [[ $archive_system = none ]]
3392	then
3393	printf " +++ archiving on $localhost not available!\n"
3394	fi
3395
3396	if [[ $archive_system != none ]]
3397	then
3398	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3399	then
3400	subjob -d -v -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3401	elif [[ $localhost = nech ]]
3402	then
3403	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3404	fi
3405	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3406	fi
3407	else
3408	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3409	fi
3410
3411
3412	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3413	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3414	if [[ $files_for_pes = false ]]
3415	then
3416	cat /dev/null > ${pathout[$i]}
3417	else
3418	mkdir -p ${pathout[$i]}
3419	fi
3420
3421	fi
3422
3423
3424	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3425	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3426	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3427	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3428	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3429	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3430	if [[ "${actionout[$i]}" = ar ]]
3431	then
3432	if [[ $files_for_pes = false ]]
3433	then
3434	printf "\n >>> OUTPUT: ${localout[$i]} to"
3435	printf "\n ${pathout[$i]}"
3436	printf "\n File will be copied to archive-system ($archive_system) !\n"
3437	else
3438	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3439	printf "\n ${pathout[$i]}"
3440	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3441	fi
3442	mv ${localout[$i]} ${frelout[$i]}
3443
3444	file_saved=false
3445
3446	if [[ $archive_system = asterix ]]
3447	then
3448	do_stageout=true
3449	(( stageout_anz = 0 ))
3450	while [[ $do_stageout = true ]]
3451	do
3452	if [[ $files_for_pes = false ]]
3453	then
3454	stageout ${frelout[$i]} > STAGE_OUTPUT
3455	else
3456	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3457	fi
3458	cat STAGE_OUTPUT
3459	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3460	then
3461	file_saved=true
3462	do_stageout=false
3463	else
3464	if [[ $files_for_pes = false ]]
3465	then
3466	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3467	else
3468	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3469	fi
3470	(( stageout_anz = stageout_anz + 1 ))
3471	if (( stageout_anz == 10 ))
3472	then
3473	printf "\n +++ stoped after 10 unsuccessful tries!"
3474	archive_save=false
3475	do_stageout=false
3476	else
3477	printf "\n *** new try to store on archive after 15 min:"
3478	sleep 900
3479	fi
3480	fi
3481	done
3482	elif [[ $archive_system = DMF ]]
3483	then
3484	if [[ $files_for_pes = false ]]
3485	then
3486	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3487	locat=DMF
3488	exit
3489	else
3490	rm -rf $ARCHIVE/${frelout[$i]}
3491	cp -r ${frelout[$i]} $ARCHIVE
3492	fi
3493	file_saved=true
3494	elif [[ $archive_system = tivoli ]]
3495	then
3496	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3497	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3498	# GELEGT WERDEN
3499	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3500	chmod g+rx $tmp_data_catalog
3501	if [[ $files_for_pes = false ]]
3502	then
3503	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3504	else
3505	mkdir $tmp_data_catalog/${frelout[$i]}
3506	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3507	fi
3508
3509	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3510	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3511	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3512	if [[ $files_for_pes = false ]]
3513	then
3514	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3515	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3516	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3517	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3518	else
3519	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3520	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3521	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3522	fi
3523
3524	subjob -v -d -q cdata -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3525	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3526	file_saved=true
3527
3528	elif [[ $archive_system = ut ]]
3529	then
3530	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3531	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3532	# GELEGT WERDEN
3533	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3534	chmod g+rx $tmp_data_catalog
3535	if [[ $files_for_pes = false ]]
3536	then
3537	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3538	else
3539	mkdir $tmp_data_catalog/${frelout[$i]}
3540	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3541	fi
3542
3543	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3544	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3545	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3546	if [[ $files_for_pes = false ]]
3547	then
3548	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3549	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3550	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3551	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3552	else
3553	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3554	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3555	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3556	fi
3557
3558	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 -f $filetransfer_protocol archive_${frelout[$i]}
3559	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3560	file_saved=true
3561
3562	else
3563	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3564	archive_save=false
3565	fi
3566	if [[ $file_saved = true ]]
3567	then
3568	if [[ $files_for_pes = false ]]
3569	then
3570	cat /dev/null > ${pathout[$i]}
3571	else
3572	mkdir -p ${pathout[$i]}
3573	fi
3574	fi
3575	fi
3576
3577	# APPEND AUF LOKALER MASCHINE
3578	if [[ "${actionout[$i]}" = "a" ]]
3579	then
3580	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3581	cat ${localout[$i]} >> ${pathout[$i]}
3582	fi
3583
3584	# KOPIEREN AUF LOKALER MASCHINE
3585	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3586	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3587	then
3588
3589	# KOPIEREN AUF EINPROZESSORMASCHINE
3590	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3591	then
3592	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3593	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3594	else
3595	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3596	cp ${localout[$i]} ${pathout[$i]}
3597	fi
3598
3599	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3600	then
3601
3602	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3603	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3604	# WIRD DANN KOPIERT
3605	# PER MOVE UMBENANNT WERDEN
3606	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3607	cp -r ${localout[$i]} ${pathout[$i]}
3608
3609	fi
3610	fi
3611	done
3612	if (( i != 0 ))
3613	then
3614	if [[ $transfer_problems = true ]]
3615	then
3616	printf "\n$striche\n *** OUTPUT-files saved"
3617	printf "\n +++ WARNING: some data transfers failed! \n"
3618	else
3619	printf "\n$striche\n *** all OUTPUT-files saved \n"
3620	fi
3621	fi
3622
3623
3624	# EVENTUELL FOLGEJOB STARTEN
3625	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
3626	if [[ -f CONTINUE_RUN ]]
3627	then
3628
3629	if [[ $archive_save = true ]]
3630	then
3631
3632	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
3633	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
3634	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
3635	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
3636	# HANDEN
3637	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
3638	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
3639	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
3640	if [[ $(echo $mc \| grep -c "#") != 0 ]]
3641	then
3642	mc=`echo $mc \| sed 's/#/f/g'`
3643	fi
3644
3645
3646	# JOB STARTEN
3647	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
3648	echo " $mc"
3649	printf "\n$striche\n"
3650	if [[ $localhost != $fromhost ]]
3651	then
3652
3653	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
3654	then
3655	echo "*** ssh will be used to initiate restart-runs!"
3656	echo " return_addres=\"$return_addres\" "
3657	echo " return_username=\"$return_username\" "
3658	if [[ $return_addres = 172.20.25.41 ]]
3659	then
3660	# WORKAROUND AUF SCIROCCO AM TIT
3661	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
3662	else
3663	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
3664	fi
3665	else
3666	printf "\n +++ no restart mechanism available for host \"$localhost\" "
3667	locat=restart; exit
3668	fi
3669
3670	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
3671	# DER AKTUELLE JOB ENDET
3672	sleep 30
3673
3674	else
3675
3676	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
3677	# RUFEN WERDEN
3678	cd $LOCAL_PWD
3679	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
3680	cd - > /dev/null
3681	fi
3682	printf "\n$striche\n *** restart-run initiated \n"
3683
3684
3685	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
3686	# GEHOLT WORDEN SIND, LOESCHEN
3687	(( i = 0 ))
3688	while (( i < iin ))
3689	do
3690	(( i = i + 1 ))
3691	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
3692	then
3693	rm -r $tmp_data_catalog/${frelin[$i]}
3694	fi
3695	done
3696
3697	else
3698
3699	printf "\n +++ no restart-run possible, since errors occured"
3700	printf "\n during the archive process"
3701	fi
3702
3703	fi
3704
3705
3706
3707	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
3708	if [[ "$email_notification" != "" ]]
3709	then
3710
3711	if [[ $localhost != $fromhost ]]
3712	then
3713	if [[ -f CONTINUE_RUN ]]
3714	then
3715	echo "PALM restart run necessary" > email_text
3716	echo "description header of actual run:" >> email_text
3717	cat CONTINUE_RUN >> email_text
3718	echo "mrun-command to restart:" >> email_text
3719	echo "$mc" >> email_text
3720	else
3721	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
3722	fi
3723	mail $email_notification < email_text
3724	printf "\n *** email notification sent to \"$email_notification\" "
3725	fi
3726	fi
3727
3728
3729
3730	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
3731	cd $HOME
3732	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
3733
3734	else
3735
3736
3737	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
3738	# CHENDE AKTIONEN DURCHGEFUEHRT
3739
3740	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
3741	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -f $filetransfer_protocol -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
3742	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
3743	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
3744	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
3745	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
3746	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
3747	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
3748	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
3749	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
3750	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
3751	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
3752	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
3753	if [[ $use_openmp = true ]]
3754	then
3755	mrun_com=${mrun_com}" -O"
3756	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
3757	else
3758	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
3759	fi
3760	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
3761	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
3762	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
3763	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
3764	[[ $node_usage != default ]] && mrun_com=${mrun_com}" -n $node_usage"
3765	if [[ $do_remote = true ]]
3766	then
3767	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
3768	fi
3769
3770
3771	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
3772	jobfile=jobfile.$RANDOM
3773
3774
3775	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
3776	echo "mkdir $TEMPDIR" >> $jobfile
3777	echo "cd $TEMPDIR" >> $jobfile
3778
3779
3780	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
3781	if [[ $do_trace = true ]]
3782	then
3783	echo "set -x" >> $jobfile
3784	else
3785	echo "set +vx" >> $jobfile
3786	fi
3787
3788
3789	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
3790	# SOWIE GEGEBENENFALLS DES MAKEFILES
3791	if [[ $do_compile = true ]]
3792	then
3793
3794	source_catalog=SOURCES_FOR_RUN_$fname
3795
3796	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
3797	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
3798	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
3799	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
3800	echo "export SOURCES_COMPLETE=true" >> $jobfile
3801	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
3802
3803	for filename in $source_list
3804	do
3805	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3806	echo "cat > $filename << \"%END%\"" >> $jobfile
3807	cat $source_catalog/$filename >> $jobfile
3808	echo " " >> $jobfile
3809	echo "%END%" >> $jobfile
3810	echo " " >> $jobfile
3811	done
3812
3813	if [[ "$use_makefile" = true ]]
3814	then
3815	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3816	echo "cat > Makefile << \"%END%\"" >> $jobfile
3817	cat $source_catalog/Makefile >> $jobfile
3818	echo " " >> $jobfile
3819	echo "%END%" >> $jobfile
3820	echo " " >> $jobfile
3821	fi
3822
3823	echo "cd - > /dev/null" >> $jobfile
3824
3825	fi
3826
3827
3828	# ABSPEICHERN DER KONFIGURATIONSDATEI
3829	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3830	echo "cat > $config_file << \"%END%\"" >> $jobfile
3831	cat $config_file >> $jobfile
3832	echo "%END%" >> $jobfile
3833	echo " " >> $jobfile
3834
3835
3836	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
3837	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
3838	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
3839	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
3840	echo "%END%" >> $jobfile
3841	if [[ $host = lctit ]]
3842	then
3843	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
3844	echo "mv mrun_new $mrun_script_name" >> $jobfile
3845	fi
3846	echo "chmod u+x $mrun_script_name" >> $jobfile
3847	echo "execute_mrun=true" >> $jobfile
3848	echo " " >> $jobfile
3849
3850	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
3851	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
3852	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
3853	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
3854	if [[ $do_remote = true ]]
3855	then
3856	(( i = 0 ))
3857	while (( i < iin ))
3858	do
3859	(( i = i + 1 ))
3860	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
3861	if [[ "${transin[$i]}" = job ]]
3862	then
3863	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
3864	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
3865	echo " " >> $jobfile
3866	echo "%END%" >> $jobfile
3867	else
3868	if [[ $filetransfer_protocol = ftp ]]
3869	then
3870	echo "ftpcopy -b -o -g -s $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3871	else
3872	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
3873	fi
3874	fi
3875
3876	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
3877	echo "if [[ \$? = 1 ]]" >> $jobfile
3878	echo "then" >> $jobfile
3879	echo " echo \" \" " >> $jobfile
3880	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
3881	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
3882	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
3883	echo " execute_mrun=false" >> $jobfile
3884	echo "fi" >> $jobfile
3885	done
3886	fi
3887
3888	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
3889	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
3890	echo "LOCAL_PWD=$working_directory" >> $jobfile
3891	echo "export LOCAL_PWD" >> $jobfile
3892
3893	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
3894	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
3895	echo "export LOCAL_MRUN_PATH" >> $jobfile
3896
3897	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
3898	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
3899	then
3900	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
3901	fi
3902
3903	# MRUN AUF ZIELRECHNER AUFRUFEN
3904	echo "set -x" >> $jobfile
3905	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
3906
3907	echo 'ls -al; echo `pwd`' >> $jobfile
3908	echo "cd \$HOME" >> $jobfile
3909	echo "rm -rf $TEMPDIR" >> $jobfile
3910
3911
3912
3913
3914	# JOB PER SUBJOB STARTEN
3915	if [[ $silent = false ]]
3916	then
3917	printf "\n "
3918	else
3919	printf "\n\n"
3920	fi
3921
3922	subjob $job_on_file -h $host -u $remote_username -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -f $filetransfer_protocol -v $jobfile
3923	rm -rf $jobfile
3924
3925
3926	fi # ENDE REMOTE-TEIL
3927
3928
3929
3930	# ENDE DER PROZEDUR

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