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source: palm/trunk/SCRIPTS/mrun @ 674

Last change on this file since 674 was 670, checked in by gryschka, 13 years ago
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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 670 2010-12-26 19:11:05Z suehring $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217	# 23/12/10 - Micha - different number of processors in ocean and atmosphere
218	# is now allowed
219
220
221
222	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
223
224	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
225	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
226	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
227
228	AddFilenames=""
229	additional_conditions=""
230	add_source_path=""
231	afname=""
232	archive_save=true
233	archive_system=none
234	compiler_name=""
235	cond1=""
236	cond2=""
237	config_file=.mrun.config
238	coupled_dist=""
239	coupled_mode="mpi1"
240	cpp_opts=""
241	cpp_options=""
242	cpumax=0
243	cpurest=0
244	delete_temporary_catalog=true
245	do_batch=false
246	do_compile=true
247	do_remote=false
248	do_stagein=true
249	do_stageout=true
250	do_trace=false
251	email_notification="none"
252	exclude=""
253	executable=""
254	execution_error=false
255	fimm=false
256	fname=test
257	fromhost=""
258	global_revision=""
259	group_number=none
260	host=""
261	host_file=""
262	hp=""
263	ignore_archive_error=false
264	input_list=""
265	interpreted_config_file=""
266	job_catalog="~/job_queue"
267	job_on_file=""
268	keep_data_from_previous_run=false
269	link_local_input=false
270	link_local_output=false
271	localhost_realname=$(hostname)
272	local_compile=false
273	local_dvrserver_running=.FALSE.
274	locat=normal
275	mainprog=""
276	makefile=""
277	mc=$0
278	while [[ $(echo $mc \| grep -c "/") != 0 ]]
279	do
280	mc=`echo $mc \| cut -f2- -d"/"`
281	done
282	module_calls=""
283	mrun_script_name=$mc
284	netcdf_inc=""
285	netcdf_lib=""
286	netcdf_support=false
287	node_usage=default
288	numprocs=""
289	numprocs_atmos=0
290	numprocs_ocean=0
291	OOPT=""
292	openmp=false
293	output_list=""
294	package_list=""
295	punkte="..........................................................."
296	queue=none
297	read_from_config=""
298	restart_run=false
299	if [[ `hostname` = rte10 ]]
300	then
301	return_addres=133.5.185.60
302	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
303	else
304	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
305	fi
306	return_password=""
307	return_username=$LOGNAME
308	remotecall=false
309	remote_username=""
310	run_coupled_model=false
311	run_mode=""
312	scirocco=false
313	store_on_archive_system=false
314	striche=" ----------------------------------------------------------------------------"
315	silent=false
316	source_list=""
317	source_path=SOURCE
318	tasks_per_node=""
319	threads_per_task=1
320	tmpcreate=false
321	tmp_data_catalog=""
322	transfer_problems=false
323	usern=$LOGNAME
324	use_openmp=false
325	working_directory=`pwd`
326	TOPT=""
327	XOPT=""
328	zeit=$( date \| cut -c 12-19 )
329
330	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
331	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
332
333	typeset -R30 calltime
334	typeset -L20 spalte1
335	typeset -L40 spalte2
336	typeset -L60 spalte3
337	typeset -L35 string1=`date`
338	typeset -L12 string2=$usern
339	typeset -L12 string3=$localhost_realname
340	typeset -L12 string4
341	typeset -L12 string5
342	typeset -L30 version="MRUN 2.0 Rev$Rev: 670 $"
343
344
345
346	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
347	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
348
349	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
350	# EXPORTIERT WERDEN
351	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
352	export group_number input_list memory numprocs output_list queue run_mode
353
354
355
356	# FEHLERBEHANDLUNG
357	# BEI EXIT:
358	trap 'rm -rf $working_directory/tmp_mrun
359	if [[ $locat != localhost ]]
360	then
361	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
362	# then
363	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
364	#MRUN-calls on $localhost
365	#
366	#date and time user localhost remotehost termination mrun-command
367	#--------------------------------------------------------------------------------------------------------------------
368	#%STATEND%
369	# chmod 666 ${mrun_path}/statistik/mrun_statistik
370	# fi
371	#
372	# # EINTRAG IN DIE STATISTIK-DATEI
373	# string4=$host
374	# string5=$locat
375	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
376	# then
377	# if [[ $do_batch = true ]]
378	# then
379	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
380	# else
381	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
382	# fi
383	# fi
384	echo " " > /dev/null
385	fi
386
387	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
388	then
389
390	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
391	(( i = 0 ))
392	while (( i < iec ))
393	do
394	(( i = i + 1 ))
395	printf "\n *** Execution of ERROR-command:\n"
396	printf " >>> ${err_command[$i]}\n"
397	eval ${err_command[$i]}
398	done
399	if [[ -n $interpreted_config_file ]] then
400	rm -rf $interpreted_config_file
401	fi
402	if [[ -n .mrun_environment ]] then
403	rm -rf .mrun_environment
404	fi
405	if [[ $tmpcreate = true ]]
406	then
407	printf "\n *** Contents of \"$TEMPDIR\":\n"
408	ls -al; cd
409	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
410	fi
411	if [[ "$dvrserver_id" != "" ]]
412	then
413	echo "+++ killing dvrserver_id=$dvrserver_id"
414	kill $dvrserver_id
415	fi
416	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
417	then
418	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
419	fi
420	printf "\n\n+++ MRUN killed \n\n"
421	elif [[ $locat != control_c ]]
422	then
423	printf "\n\n --> all actions finished\n\n"
424	printf " Bye, bye $usern !!\n\n"
425	fi' exit
426
427
428	# BEI TERMINAL-BREAK:
429	trap 'rm -rf $working_directory/tmp_mrun
430	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
431	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
432	then
433	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
434	fi
435	if [[ "$dvrserver_id" != "" ]]
436	then
437	echo "+++ killing dvrserver_id=$dvrserver_id"
438	kill $dvrserver_id
439	fi
440	printf "\n+++ MRUN killed by \"^C\" \n\n"
441	locat=control_c
442	exit
443	' 2
444
445
446	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
447	# BEEN SET
448	if [[ "$PALM_BIN" = "" ]]
449	then
450	printf "\n +++ environment variable PALM_BIN has not been set"
451	printf "\n please set it to the directory where the PALM scripts are located"
452	locat=palm_bin; exit
453	fi
454	export PATH=$PALM_BIN:$PATH
455
456
457
458	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
459	# FUER FOLGEJOBS BENOETIGT WIRD
460	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
461	do
462	case $option in
463	(a) afname=$OPTARG;;
464	(A) store_on_archive_system=true; mc="$mc -A";;
465	(b) do_batch=true; mc="$mc -b";;
466	(B) delete_temporary_catalog=false; mc="$mc -B";;
467	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
468	(C) restart_run=true; mc="$mc -C";;
469	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
470	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
471	(F) job_on_file="-D"; mc="$mc -F";;
472	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
473	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
474	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
475	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
476	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
477	(I) ignore_archive_error=true; mc="$mc -I";;
478	(k) keep_data_from_previous_run=true; mc="$mc -k";;
479	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
480	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
481	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
482	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
483	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
484	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
485	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
486	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
487	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
488	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
489	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
490	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
491	(S) read_from_config=false; mc="$mc -S";;
492	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
493	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
494	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
495	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
496	(v) silent=true; mc="$mc -v";;
497	(x) do_trace=true;set -x; mc="$mc -x";;
498	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
499	(y) ocean_file_appendix=true; mc="$mc -y";;
500	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
501	(\?) printf "\n +++ unknown option $OPTARG \n"
502	printf "\n --> type \"$0 ?\" for available options \n"
503	locat=parameter;exit;;
504	esac
505	done
506
507
508	# EVTL. POSITIONSPARAMETER EINLESEN
509	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
510	shift OPTIND-1
511
512
513	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
514	if [[ "$1" = "?" ]]
515	then
516	(printf "\n *** mrun can be called as follows:\n"
517	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
518	printf "\n Description of available options:\n"
519	printf "\n Option Description Default-Value"
520	printf "\n -a base name of input files equiv. -d"
521	printf "\n -A archiving when using file-attribute fl"
522	printf "\n -b batch-job on local machine ---"
523	printf "\n -B do not delete temporary directory at end ---"
524	printf "\n -c configuration file .mrun.config"
525	printf "\n -d base name of files attached to program test"
526	printf "\n -D preprocessor(cpp)-directives \"\" "
527	printf "\n -F create remote job file only ---"
528	printf "\n -h execution host $localhost_realname"
529	printf "\n -i INPUT control list \"\" "
530	printf "\n -I archiving errors of previous batch-jobs"
531	printf "\n will be ignored"
532	printf "\n -k keep data from previous run"
533	printf "\n -K additional conditions for controling"
534	printf "\n usage of conditional code and"
535	printf "\n env-variables in configuration file \"\" "
536	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
537	printf "\n -M Makefile name Makefile"
538	printf "\n -n node usage (shared/not_shared) depending on -h"
539	printf "\n -o OUTPUT control list \"\" "
540	printf "\n -O use OpenMP ---"
541	printf "\n -p software package list \"\" "
542	printf "\n -q queue \"$queue\" "
543	printf "\n -r run control list (combines -i -o) \"\" "
544	printf "\n -s filenames of routines to be compiled \"\" "
545	printf "\n must end with .f, .f90, .F, or .c !"
546	printf "\n use \"..\" for more than one file and wildcards"
547	printf "\n -s TEST compiles all files with w-permit"
548	printf "\n -S config file interpreted by shellscript ---"
549	printf "\n -t allowed cpu-time in seconds (batch) 0"
550	printf "\n -T tasks per node depending on -h"
551	printf "\n -u username on remote machine \"\" "
552	printf "\n -v no prompt for confirmation ---"
553	printf "\n -x tracing of mrun for debug purposes ---"
554	printf "\n -X # of processors (on parallel machines) 1"
555	printf "\n -y add appendix \"_O\" to all local output"
556	printf "\n files (ocean precursor runs followed by"
557	printf "\n coupled atmosphere-ocean runs) ---"
558	printf "\n -Y run coupled model, \"#1 #2\" with"
559	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
560	printf "\n "
561	printf "\n Possible values of positional parameter <modus>:"
562	printf "\n \"?\" - this outline \n\n") \| more
563	exit
564	elif [[ "$1" != "" ]]
565	then
566	printf "\n +++ positional parameter $1 unknown \n"
567	locat=parameter; exit
568	fi
569
570
571
572	# KURZE STARTMELDUNG
573	printf "\n*** $version "
574	printf "\n will be executed. Please wait ..."
575
576
577
578	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
579	if [[ ! -f $config_file ]]
580	then
581	printf "\n\n +++ configuration file: "
582	printf "\n $config_file"
583	printf "\n does not exist"
584	locat=connect; exit
585	fi
586
587
588	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
589	line=""
590	grep "%host_identifier" $config_file > tmp_mrun
591	while read line
592	do
593	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
594	then
595	HOSTNAME=`echo $line \| cut -d" " -s -f2`
596	host_identifier=`echo $line \| cut -d" " -s -f3`
597	if [[ $localhost_realname = $HOSTNAME ]]
598	then
599	localhost=$host_identifier
600	break
601	fi
602	fi
603	done < tmp_mrun
604
605	if [[ "$localhost" = "" ]]
606	then
607	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
608	printf "\n for local host \"$localhost_realname\"."
609	printf "\n Please add line"
610	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
611	printf "\n to the configuration file."
612	locat=localhost; exit
613	fi
614
615
616	# HOSTSPEZIFISCHE VARIABLEN SETZEN
617	case $localhost_realname in
618	(r1\|r2\|h01\|b01) archive_system=tivoli;;
619	(cs*) archive_system=ut;;
620	(fimm.bccs.uib.no) fimm=true;;
621	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
622	(scirocco) scirocco=true;;
623	esac
624
625
626
627	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
628	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
629	[[ "$afname" = "" ]] && afname=$fname
630
631
632	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
633	if [[ "$run_mode" != "" ]]
634	then
635	input_list="$input_list $run_mode"
636	output_list="$output_list $run_mode"
637	fi
638
639
640	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
641	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
642	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
643	# STARTET)
644	if [[ "$fromhost" = "" ]]
645	then
646	fromhost=$localhost
647	fi
648
649
650	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
651	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
652	then
653	source_list=TEST
654	local_compile=true
655	host=$localhost
656	fi
657
658
659	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
660	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
661	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
662	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
663	if [[ -n $host && "$host" != $localhost ]]
664	then
665	do_batch=true
666	do_remote=true
667	case $host in
668	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
669	(*) printf "\n"
670	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
671	printf "\n is not available"
672	locat=nqs; (( iec = 0 )); exit;;
673	esac
674	else
675	host=$localhost
676	fi
677
678
679	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
680	if [[ -n $additional_conditions ]]
681	then
682	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
683	cond1=`echo $additional_conditions \| cut -d" " -f1`
684	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
685	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
686	if [[ -n $dummy ]]
687	then
688	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
689	locat=options; exit
690	fi
691	block=_$cond1
692	[[ -n $cond2 ]] && block=${block}_$cond2
693	fi
694
695
696	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
697	if [[ $run_coupled_model = true ]]
698	then
699
700	if [[ -n $coupled_dist ]]
701	then
702
703	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
704	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
705
706	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
707	then
708
709	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
710	printf "\n PEs (total) : $numprocs"
711	printf "\n PEs (atmosphere): $numprocs_atmos"
712	printf "\n PEs (ocean) : $numprocs_ocean"
713	locat=coupling; exit
714
715	fi
716
717	else
718
719	(( numprocs_ocean = $numprocs / 2 ))
720	(( numprocs_atmos = $numprocs / 2 ))
721
722	fi
723	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
724
725	# GET coupled_mode FROM THE CONFIG FILE
726	line=""
727	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
728	while read line
729	do
730	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
731	then
732	coupled_mode="mpi2"
733	fi
734	done < tmp_mrun
735
736	fi
737
738
739	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
740	# ARCHIVIERUNG FEHLGESCHLAGEN IST
741	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
742	then
743	if [[ $ignore_archive_error = false ]]
744	then
745	printf "\n +++ data archiving of previous run failed"
746	printf "\n see directory \~/job_queue on remote machine"
747	locat=archive; exit
748	else
749	printf "\n +++ warning: data archiving in a previous run failed"
750	printf "\n MRUN continues, trying to get backup copy"
751	fi
752	fi
753
754
755
756	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
757	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
758	if [[ "$read_from_config" = false ]]
759	then
760
761	[[ $silent = false ]] && printf "\n Reading the configuration file... "
762	while read zeile
763	do
764	[[ $silent = false ]] && printf "."
765
766
767	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
768	# ERSETZEN
769	eval zeile=\"$zeile\"
770
771
772	# INTERPRETATION DER ZEILE
773	if [[ "$(echo $zeile)" = "" ]]
774	then
775	# LEERZEILE, KEINE AKTION
776	continue
777
778	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
779	then
780
781	# ZEILE IST KOMMENTARZEILE
782	true
783
784	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
785	then
786
787	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
788	zeile=$(echo $zeile \| cut -c2-)
789	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
790	var=`echo $zeile \| cut -d" " -f1`
791	value=`echo $zeile \| cut -d" " -s -f2`
792	for_host=`echo $zeile \| cut -d" " -s -f3`
793	for_cond1=`echo $zeile \| cut -d" " -s -f4`
794	for_cond2=`echo $zeile \| cut -d" " -s -f5`
795
796	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
797	then
798
799	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
800	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
801	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
802
803
804	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
805	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
806	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
807	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
808	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
809	# KONFIGURATIONSDATEI
810	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
811	then
812	eval $var=\$value
813
814	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
815	if [[ $do_trace = true ]]
816	then
817	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
818	fi
819	fi
820
821	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
822	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
823	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
824	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
825	if [[ $var = host ]]
826	then
827	if [[ -n $host && "$host" != $localhost ]]
828	then
829	do_batch=true
830	do_remote=true
831	case $host in
832	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
833	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
834	printf "\n is not available"
835	locat=nqs; exit;;
836	esac
837	else
838	host=$localhost
839	fi
840	fi
841
842	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
843	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
844	# DEN PROGRAMMEN BENOETIGT WERDEN
845	export $var
846	fi
847
848
849
850
851	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
852	then
853
854	# ZEILE DEFINIERT ERROR-KOMMANDO
855	(( iec = iec + 1 ))
856	zeile=$(echo $zeile \| cut -c4-)
857	err_command[$iec]="$zeile"
858
859	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
860	then
861
862	# ZEILE DEFINIERT INPUT-KOMMANDO
863	(( iic = iic + 1 ))
864	zeile=$(echo $zeile \| cut -c4-)
865	in_command[$iic]="$zeile"
866
867	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
868	then
869
870	# ZEILE DEFINIERT OUTPUT-KOMMANDO
871	(( ioc = ioc + 1 ))
872	zeile=$(echo $zeile \| cut -c4-)
873	out_command[$ioc]="$zeile"
874
875	else
876
877	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
878	# s2a: in/out - Feld
879	# s2b: loc - Feld (optional)
880	# s2c: tr/ar - Feld (optional)
881	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
882	s1=`echo $zeile \| cut -d" " -f1`
883	s2=`echo $zeile \| cut -d" " -s -f2`
884	s2a=$(echo $s2 \| cut -d":" -f1)
885	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
886	then
887	s2b=""
888	s2c=""
889	else
890	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
891	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
892	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
893	fi
894	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
895	s3=`echo $zeile \| cut -d" " -f3`
896	s4=`echo $zeile \| cut -d" " -s -f4`
897	s5=`echo $zeile \| cut -d" " -s -f5`
898	s6=`echo $zeile \| cut -d" " -s -f6`
899
900
901	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
902	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
903	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
904	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
905	# HANDEN SEIN MUSS (D.H. s2b = loc)
906	IFSALT="$IFS"; IFS="$IFS:"
907	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
908	then
909	found=false
910	for actual in $input_list
911	do
912	for formal in $s3
913	do
914	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
915	done
916	done
917	if [[ $found = true ]]
918	then
919	(( iin = iin + 1 ))
920	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
921	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
922	extin[$iin]=$s6
923	fi
924	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
925	then
926	found=false
927	for actual in $output_list
928	do
929	for formal in $s3
930	do
931	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
932	done
933	done
934	if [[ $found = true ]]
935	then
936	(( iout = iout + 1 ))
937	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
938	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
939	fi
940	elif [[ "$s2a" != in && "$s2a" != out ]]
941	then
942	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
943	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
944	locat=connect; exit
945	fi
946	IFS="$IFSALT"
947	fi
948	done < $config_file
949
950	else
951
952
953	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
954	[[ $silent = false ]] && printf "..."
955	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
956	export interpreted_config_file=.icf.$RANDOM
957
958
959
960	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
961	# VERFUEGUNG STELLEN
962	cat > .mrun_environment << %%END%%
963	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
964	config_file = '$config_file', do_remote = '$do_remote',
965	do_trace = '$do_trace', host = '$host',
966	input_list = '$input_list', icf = '$interpreted_config_file',
967	localhost = '$localhost', output_list = '$output_list' /
968
969	%%END%%
970
971	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
972	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
973	mrun_memory=$memory
974	mrun_group_number=$group_number
975	mrun_cpumax=$cpumax
976	mrun_numprocs=$numprocs
977
978	if [[ $localhost_realname = "sx-fep" ]]
979	then
980	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
981	else
982
983	if [[ "$host" != $localhost ]]
984	then
985
986	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
987	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
988	if [[ $? != 0 ]]
989	then
990	printf "\n\n +++ no interpret_config found"
991	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
992	locat=interpret_config; exit
993	fi
994	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
995	$interpret_config_executable
996
997	else
998
999	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1000	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1001	then
1002	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1003	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1004	locat=interpret_config; exit
1005	else
1006	interpret_config${block}.x
1007	fi
1008
1009	fi
1010	fi
1011	rm .mrun_environment
1012
1013
1014	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1015	chmod u+x $interpreted_config_file
1016	export PATH=$PATH:.
1017	. $interpreted_config_file
1018	rm $interpreted_config_file
1019
1020
1021	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1022	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1023	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1024	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1025	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1026
1027	fi
1028
1029
1030	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1031	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1032	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1033	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1034	if [[ "$SOURCES_COMPLETE" = "" ]]
1035	then
1036
1037	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1038	# VEREINBART WURDE
1039	source_path=""
1040	line=""
1041	grep "%source_path" $config_file > tmp_mrun
1042	while read line
1043	do
1044	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1045	then
1046	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1047	then
1048	global_source_path=`echo $line \| cut -d" " -f2`
1049	fi
1050	fi
1051	done < tmp_mrun
1052
1053	line=""
1054	found=false
1055	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1056	while read line
1057	do
1058	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1059	then
1060	if [[ $found = true ]]
1061	then
1062	printf "\n\n +++ more than one source path found in configuration file"
1063	printf "\n for local host \"$localhost\" "
1064	locat=source_path; exit
1065	fi
1066	source_path=`echo $line \| cut -d" " -f2`
1067	found=true
1068	fi
1069	done < tmp_mrun
1070	rm tmp_mrun
1071
1072	if [[ "$source_path" = "" ]]
1073	then
1074	if [[ "$global_source_path" != "" ]]
1075	then
1076	source_path=$global_source_path
1077	else
1078	printf "\n\n +++ no source path found in configuration file"
1079	printf "\n for local host \"$localhost\" "
1080	locat=source_path; exit
1081	fi
1082	fi
1083	eval source_path=$source_path
1084
1085	if [[ ! -d $source_path ]]
1086	then
1087	printf "\n\n +++ source path \"$source_path\" on local host"
1088	printf "\n \"$localhost\" does not exist"
1089	locat=source_path; exit
1090	fi
1091
1092	fi
1093
1094
1095	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1096	# DURCH OPTION -G MITGETEILT)
1097	if [[ "$global_revision" = "" ]]
1098	then
1099	global_revision=`svnversion $source_path 2>/dev/null`
1100	global_revision="Rev: $global_revision"
1101	fi
1102
1103
1104	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1105	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1106	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1107	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1108	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1109	if [[ -n $host && "$host" != $localhost ]]
1110	then
1111	do_batch=true
1112	do_remote=true
1113	case $host in
1114	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1115	(*) printf "\n"
1116	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1117	printf "\n is not available"
1118	locat=nqs; (( iec = 0 )); exit;;
1119	esac
1120	else
1121	host=$localhost
1122	fi
1123
1124
1125	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1126	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1127	then
1128
1129	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1130	if [[ ! -n $numprocs ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ option \"-K parallel\" requires additional specification"
1134	printf "\n of the number of processors to be used by"
1135	printf "\n mrun-option \"-X\" or by environment-variable"
1136	printf "\n \"numprocs\" in the configuration file"
1137	locat=numprocs; (( iec = 0 )); exit
1138	fi
1139
1140	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1141	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1142	# GESAMTPROZESSORANZAHL IST
1143	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1144	then
1145	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1146	(( ival = $tasks_per_node ))
1147	(( pes = numprocs ))
1148	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1149	# then
1150	# (( pes = pes - 1 ))
1151	# fi
1152	(( ii = pes / ival ))
1153	if (( pes - ii * ival > 0 ))
1154	then
1155	printf "\n"
1156	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1157	printf "\n divisor of the total number of processors (option \"-X\")"
1158	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1159	locat=tasks_per_node; (( iec = 0 )); exit
1160	fi
1161	fi
1162
1163	# IBMY HAT NUR EINEN KNOTEN
1164	if [[ $host = ibmy ]]
1165	then
1166	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1167	then
1168	printf "\n"
1169	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1170	printf "\n total number of processors (option \"-X\")"
1171	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1172	locat=tasks_per_node; (( iec = 0 )); exit
1173	fi
1174	fi
1175
1176	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1177	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1178	# if [[ $use_openmp = true ]]
1179	# then
1180	# threads_per_task=$tasks_per_node
1181	# tasks_per_node=1
1182	# fi
1183
1184	# SETTINGS FOR SUBJOB-COMMAND
1185	TOPT="-T $tasks_per_node"
1186	OOPT="-O $threads_per_task"
1187
1188	# GESAMTZAHL DER KNOTEN BESTIMMEN
1189	if [[ "$tasks_per_node" != "" ]]
1190	then
1191	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1192	fi
1193
1194	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1195	# SETZEN
1196	if [[ $node_usage = default ]]
1197	then
1198	if [[ $host = ibms ]]
1199	then
1200	node_usage=shared
1201	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1202	then
1203	node_usage=singlejob
1204	else
1205	node_usage=not_shared
1206	fi
1207	fi
1208
1209	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1210	then
1211	printf "\n"
1212	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1213	printf "\n \"shared\" or \"not_shared\""
1214	locat=tasks_per_node; (( iec = 0 )); exit
1215	fi
1216
1217	fi
1218
1219	# PRUEFEN, OB HOSTFILE EXISTIERT
1220	if [[ -n $hostfile ]]
1221	then
1222	if [[ ! -f $hostfile ]]
1223	then
1224	printf "\n"
1225	printf "\n +++ hostfile \"$hostfile\" does not exist"
1226	locat=hostfile; exit
1227	fi
1228	fi
1229
1230	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1231	if [[ $host = ibmy && $do_remote = false ]]
1232	then
1233	if [[ ! -f $HOME/.rhosts ]]
1234	then
1235	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1236	printf "\n\n *** file:"
1237	printf "\n $HOME/.rhosts"
1238	printf "\n was created\n"
1239	fi
1240	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1241	then
1242	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1243	printf "\n\n *** file:"
1244	printf "\n $HOME/.rhosts"
1245	printf "\n was extended by the name of the current host\n"
1246	fi
1247	fi
1248
1249
1250
1251	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1252	if [[ $queue = none ]]
1253	then
1254	case $host in
1255	(ibmh) queue=no_class;;
1256	(ibmy) queue=parallel;;
1257	(lckyoto) queue=ph;;
1258	(lcsgib) queue=bigq;;
1259	(lcsgih) queue=bigq;;
1260	(lctit) queue=S;;
1261	(nech) queue=none;;
1262	(necriam) queue=SP;;
1263	(unics) queue=unics;;
1264	esac
1265	fi
1266
1267
1268	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1269	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1270	# ERMITTELN
1271	(( i = 0 ))
1272	while (( i < iin ))
1273	do
1274	(( i = i + 1 ))
1275	(( maxcycle = 0 ))
1276
1277	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1278	if [[ "${actionin[$i]}" = di ]]
1279	then
1280	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1281	# REM-MASCHINE AUSWERTEN
1282	eval filename=${pathin[$i]}/${endin[$i]}
1283	else
1284	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1285	# REM-MASCHINE AUSWERTEN
1286	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1287	fi
1288
1289	# PRUEFEN AUF VORHANDENSEIN
1290	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1291	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1292	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1293	then
1294	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1295	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1296	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1297	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1298	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1299	if [[ "${transin[$i]}" != "locopt" ]]
1300	then
1301	printf "\n\n +++ INPUT-file: "
1302	if [[ "${extin[$i]}" = "" ]]
1303	then
1304	printf "\n $filename"
1305	else
1306	printf "\n $filename.${extin[$i]}"
1307	fi
1308	printf "\n does not exist\n"
1309	locat=input; exit
1310	else
1311	transin[$i]="unavailable"
1312	fi
1313	else
1314
1315	# ZYKLUSNUMMER FESTSTELLEN
1316	ls -1 -d $filename > filelist 2>/dev/null
1317	ls -1 -d $filename.* >> filelist 2>/dev/null
1318	while read zeile
1319	do
1320	cycle=$(print $zeile \| cut -f2 -d".")
1321	if [[ "$cycle" = "$zeile" ]]
1322	then
1323	(( icycle = 0 ))
1324	elif [[ "$cycle" = "${extin[$i]}" ]]
1325	then
1326	(( icycle = 0 ))
1327	else
1328	(( icycle = $cycle ))
1329	fi
1330	if (( icycle > maxcycle ))
1331	then
1332	(( maxcycle = icycle ))
1333	file_to_be_used=$zeile
1334	fi
1335	done <filelist
1336	rm filelist
1337
1338	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1339	if (( maxcycle > 0 ))
1340	then
1341	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1342	then
1343	filename=${filename}.$maxcycle.${extin[$i]}
1344	else
1345	filename=${filename}.$maxcycle
1346	fi
1347	else
1348	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1349	then
1350	filename=${filename}.${extin[$i]}
1351	fi
1352	fi
1353
1354	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1355	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1356	absnamein[$i]=$filename
1357	if (( maxcycle > 0 ))
1358	then
1359	if [[ "${actionin[$i]}" = di ]]
1360	then
1361	frelin[$i]=${endin[$i]}.$maxcycle
1362	else
1363	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1364	fi
1365	else
1366	if [[ "${actionin[$i]}" = di ]]
1367	then
1368	frelin[$i]=${endin[$i]}
1369	else
1370	frelin[$i]=${afname}${endin[$i]}
1371	fi
1372	fi
1373
1374	fi
1375	done
1376
1377
1378	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1379	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1380	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1381	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1382	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1383	(( i = 0 ))
1384	while (( i < iout ))
1385	do
1386	(( i = i + 1 ))
1387	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1388	then
1389	if [[ "${actionout[$i]}" = tr ]]
1390	then
1391	actionout[$i]=""
1392	elif [[ "${actionout[$i]}" = trpe ]]
1393	then
1394	actionout[$i]=pe
1395	elif [[ "${actionout[$i]}" = tra ]]
1396	then
1397	actionout[$i]=a
1398	fi
1399	(( maxcycle = 0 ))
1400	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1401	eval catalogname=${pathout[$i]}
1402	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1403	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1404	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1405	then
1406
1407	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1408	if cat /dev/null > $filename
1409	then
1410	rm $filename
1411	else
1412
1413	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1414	if [[ ! -d $catalogname ]]
1415	then
1416	if mkdir -p $catalogname
1417	then
1418	printf "\n\n *** directory:"
1419	printf "\n $catalogname"
1420	printf "\n was created\n"
1421	else
1422	printf "\n\n +++ OUTPUT-file:"
1423	printf "\n $filename"
1424	printf "\n cannot be created, because directory does not exist"
1425	printf "\n and cannot be created either"
1426	printf "\n"
1427	locat=output ; exit
1428	fi 2>/dev/null
1429	else
1430	printf "\n\n +++ OUTPUT-file:"
1431	printf "\n $filename"
1432	printf "\n cannot be created, although directory exists"
1433	printf "\n"
1434	locat=output ; exit
1435	fi
1436	fi 2>/dev/null
1437	else
1438
1439	# ZYKLUSNUMMER FESTSTELLEN
1440	ls -1 -d $filename > filelist 2>/dev/null
1441	ls -1 -d $filename.* >> filelist 2>/dev/null
1442	while read zeile
1443	do
1444	cycle=$(print $zeile \| cut -f2 -d".")
1445	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1446	then
1447	(( icycle = 1 ))
1448	else
1449	(( icycle = $cycle + 1 ))
1450	fi
1451	if (( icycle > maxcycle ))
1452	then
1453	(( maxcycle = icycle ))
1454	fi
1455	done <filelist
1456	rm filelist
1457	fi
1458
1459	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1460	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1461	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1462	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1463	if [[ "${actionout[$i]}" != a ]]
1464	then
1465	if (( maxcycle > 0 ))
1466	then
1467	filename=${filename}.$maxcycle
1468	if cat /dev/null > $filename
1469	then
1470	rm $filename
1471	else
1472	printf "\n +++ OUTPUT-file:"
1473	printf "\n $filename"
1474	printf "\n cannot be created"
1475	locat=output ; exit
1476	fi
1477	fi
1478	else
1479	(( maxcycle = maxcycle - 1 ))
1480	if (( maxcycle > 0 ))
1481	then
1482	filename=${filename}.$maxcycle
1483	fi
1484	fi
1485
1486	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1487	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1488	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1489	pathout[$i]=$filename
1490	if (( maxcycle > 0 ))
1491	then
1492	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1493	else
1494	frelout[$i]=${fname}${endout[$i]}
1495	fi
1496
1497	fi
1498	done
1499
1500
1501	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1502	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1503	then
1504	if [[ "$dvr_inc" = "" ]]
1505	then
1506	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1507	printf "\n This is required for the dvrp_graphics package.\n"
1508	locat=dvr; exit
1509	fi
1510	if [[ "$dvr_lib" = "" ]]
1511	then
1512	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1513	printf "\n This is required for the dvrp_graphics package.\n"
1514	locat=dvr; exit
1515	fi
1516	fi
1517
1518
1519	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1520	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1521	# UEBERSETZT ZU WERDEN)
1522	if [[ "$mainprog" = "" && "$executable" = "" ]]
1523	then
1524	printf "\n +++ neither main program nor executable defined"
1525	locat=source; exit
1526	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1527	then
1528	printf "\n +++ main program as well as executable defined"
1529	locat=source; exit
1530	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1531	then
1532	do_compile=false
1533	fi
1534
1535
1536	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1537	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1538	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1539	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1540	then
1541	rm -rf SOURCES_FOR_RUN_$fname
1542	mkdir SOURCES_FOR_RUN_$fname
1543	fi
1544
1545
1546	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1547	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1548	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1549	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1550	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1551	then
1552
1553	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1554	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1555
1556
1557	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1558	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1559	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1560	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1561	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1562	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1563	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1564	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1565	# GESAMMELT
1566	if [[ "$source_list" = WRITE_PERMIT ]]
1567	then
1568
1569	source_list=""
1570	cd $source_path
1571
1572
1573	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1574	Names=$(ls -1 *.f90 2>&1)
1575	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1576	Names=$(ls -1 *.F90 2>&1)
1577	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1578	Names=$(ls -1 *.F 2>&1)
1579	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1580	Names=$(ls -1 *.f 2>&1)
1581	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1582	Names=$(ls -1 *.c 2>&1)
1583	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1584
1585
1586	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1587	for dateiname in $Filenames
1588	do
1589	if [[ -w $dateiname ]]
1590	then
1591	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1592	then
1593	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1594	source_list=$source_list"$dateiname "
1595	fi
1596	fi
1597	done
1598
1599	cd - > /dev/null
1600
1601
1602	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1603	then
1604
1605	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1606	source_list=""
1607	cd $source_path
1608
1609
1610	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1611	if [[ ! -d .svn ]]
1612	then
1613	printf "\n\n +++ source directory"
1614	printf "\n \"$source_path\" "
1615	printf "\n is not under control of \"subversion\"."
1616	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1617	fi
1618
1619
1620	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1621	Filenames=""
1622	svn status > tmp_mrun
1623	while read line
1624	do
1625	firstc=`echo $line \| cut -c1`
1626	if [[ $firstc = M \|\| $firstc = "?" ]]
1627	then
1628	Name=`echo "$line" \| cut -c8-`
1629	extension=`echo $Name \| cut -d. -f2`
1630	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1631	then
1632	Filenames="$Filenames "$Name
1633	fi
1634	fi
1635	done < tmp_mrun
1636
1637
1638	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1639	for dateiname in $Filenames
1640	do
1641	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1642	source_list=$source_list"$dateiname "
1643	done
1644
1645	cd - > /dev/null
1646
1647
1648	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1649	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1650	# VORHANDEN
1651	elif [[ "$source_list" != "" && $restart_run != true ]]
1652	then
1653
1654	cd $source_path
1655
1656	for filename in $source_list
1657	do
1658
1659	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1660	if [[ $(print $filename \| grep -c "/") != 0 ]]
1661	then
1662	printf "\n +++ source code file: $filename"
1663	printf "\n must not contain (\"/\") "
1664	locat=source; exit
1665	fi
1666
1667	if [[ ! -f $filename ]]
1668	then
1669	printf "\n +++ source code file: $filename"
1670	printf "\n does not exist"
1671	locat=source; exit
1672	else
1673	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1674	fi
1675
1676	done
1677
1678	cd - > /dev/null
1679
1680	fi
1681
1682
1683	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1684	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1685	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1686	if [[ $restart_run != true ]]
1687	then
1688
1689	if [[ ! -f "$source_path/$mainprog" ]]
1690	then
1691	printf "\n\n +++ main program: $mainprog"
1692	printf "\n does not exist in source directory"
1693	printf "\n \"$source_path\"\n"
1694	locat=source; exit
1695	else
1696	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1697	then
1698	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1699	source_list=${mainprog}" $source_list"
1700	fi
1701	fi
1702	fi
1703
1704
1705	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1706	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1707	if [[ "$restart_run" != true ]]
1708	then
1709	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1710	if [[ ! -f $makefile ]]
1711	then
1712	printf "\n +++ file \"$makefile\" does not exist"
1713	locat=make; exit
1714	else
1715	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1716	fi
1717	fi
1718
1719
1720	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1721	if [[ $restart_run != true && "$add_source_path" != "" ]]
1722	then
1723
1724	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1725	if [[ ! -d $add_source_path ]]
1726	then
1727	printf "\n\n +++ WARNING: additional source code directory"
1728	printf "\n \"$add_source_path\" "
1729	printf "\n does not exist or is not a directory."
1730	printf "\n No source code will be used from this directory!\n"
1731	add_source_path=""
1732	sleep 3
1733	else
1734
1735	cd $add_source_path
1736	found=false
1737
1738	Names=$(ls -1 *.f90 2>&1)
1739	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1740	Names=$(ls -1 *.F90 2>&1)
1741	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1742	Names=$(ls -1 *.F 2>&1)
1743	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1744	Names=$(ls -1 *.f 2>&1)
1745	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1746	Names=$(ls -1 *.c 2>&1)
1747	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1748
1749	cd - > /dev/null
1750	cd SOURCES_FOR_RUN_$fname
1751
1752	# COPY MAKEFILE IF EXISTING
1753	if [[ -f $add_source_path/Makefile ]]
1754	then
1755	printf "\n\n *** user Makefile from directory"
1756	printf "\n \"$add_source_path\" is used \n"
1757	sleep 1
1758	cp $add_source_path/Makefile .
1759	fi
1760
1761	for dateiname in $AddFilenames
1762	do
1763	if [[ -f $dateiname ]]
1764	then
1765	printf "\n +++ source code file \"$dateiname\" found in additional"
1766	printf "\n source code directory \"$add_source_path\" "
1767	printf "\n but was also given with option \"-s\" which means that it should be taken"
1768	printf "\n from directory \"$source_path\"."
1769	locat=source; exit
1770	fi
1771
1772	cp $add_source_path/$dateiname .
1773	source_list="$source_list $dateiname"
1774
1775	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1776	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1777	then
1778	printf "\n\n +++ user file \"$dateiname\" "
1779	printf "\n is not listed in Makefile \n"
1780	locat=source; exit
1781	else
1782
1783	# Default User-Interface von der Liste entfernen, falls Datei
1784	# ein User-Interface enthaelt
1785	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1786	# then
1787	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1788	# then
1789	# rm -rf user_interface.f90
1790	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1791	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1792	# printf "\n since a user-interface is found in file"
1793	# printf "\n \"$add_source_path/$dateiname\" \n"
1794	# sleep 3
1795	# else
1796	if [[ $found = false ]]
1797	then
1798	found=true
1799	printf "\n\n *** following user file(s) added to the"
1800	printf " files to be translated:\n "
1801	fi
1802	printf "$dateiname "
1803	sleep 0.5
1804	fi
1805	done
1806	[[ $found = true ]] && printf "\n"
1807	cd - > /dev/null
1808	fi
1809	fi
1810
1811
1812	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1813	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1814	if [[ $restart_run != true && -n $package_list ]]
1815	then
1816
1817	cd $source_path
1818
1819	for package in $package_list
1820	do
1821
1822	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1823
1824	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1825	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1826	# LIEFERT
1827	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1828
1829
1830	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1831	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1832	for source_list_name in $package_source_list
1833	do
1834	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1835	then
1836
1837	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1838	ending=`echo $source_list_name \| cut -f2 -d.`
1839	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1840	then
1841	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1842	source_list="$source_list $source_list_name"
1843	fi
1844	fi
1845	done
1846	done
1847
1848	cd - > /dev/null
1849	fi
1850
1851
1852	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1853	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1854	# if [[ "$restart_run" != true ]]
1855	# then
1856	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1857	# if [[ ! -f $makefile ]]
1858	# then
1859	# printf "\n +++ file \"$makefile\" does not exist"
1860	# locat=make; exit
1861	# else
1862	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1863	# fi
1864	# fi
1865
1866	fi # do_compile=true
1867
1868
1869	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1870	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1871	if [[ $do_compile = true ]]
1872	then
1873
1874	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1875	# ZUSAMMENSETZEN
1876	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1877	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1878	then
1879	cpp_options="${cpp_options},-D__ibm=__ibm"
1880	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1881	then
1882	cpp_options="$cpp_options -D__nec"
1883	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1884	then
1885	cpp_options="$cpp_options -D__lc"
1886	else
1887	cpp_options="$cpp_options -D__$localhost"
1888	fi
1889
1890	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1891	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1892	then
1893	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1894	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1895	else
1896	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1897	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1898	fi
1899
1900	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1901	if [[ -n $package_list ]]
1902	then
1903	for package in $package_list
1904	do
1905	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1906	then
1907	if [[ $package != "dvrp_graphics+1PE" ]]
1908	then
1909	cpp_options="${cpp_options},-D__$package=__$package"
1910	else
1911	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1912	export use_seperate_pe_for_dvrp_output=true
1913	fi
1914	else
1915	if [[ $package != "dvrp_graphics+1PE" ]]
1916	then
1917	cpp_options="$cpp_options -D__$package"
1918	else
1919	cpp_options="$cpp_options -D__dvrp_graphics"
1920	export use_seperate_pe_for_dvrp_output=true
1921	fi
1922	fi
1923	done
1924	fi
1925
1926	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1927	if [[ -n $cpp_opts ]]
1928	then
1929	for popts in $cpp_opts
1930	do
1931	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1932	then
1933	cpp_options="${cpp_options},-D__$popts=__$popts"
1934	else
1935	cpp_options="$cpp_options -D__$popts"
1936	fi
1937	done
1938	fi
1939
1940	else
1941
1942
1943	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1944	if [[ $do_remote = false ]]
1945	then
1946	if [[ ! -f $executable ]]
1947	then
1948	printf "\n +++ executable file: $executable"
1949	printf "\n does not exist"
1950	locat=executable; exit
1951	fi
1952	fi
1953	fi
1954
1955
1956	# JOBMODUS FESTSTELLEN
1957	if [[ "$ENVIRONMENT" = BATCH ]]
1958	then
1959	jobmo=BATCH
1960	else
1961	jobmo=INTERACTIVE
1962	fi
1963
1964
1965	# no interactive runs on lctit
1966	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1967	then
1968	printf "\n +++ no interactive runs allowed on host \"$host\" "
1969	printf "\n please submit batch job using mrun option \"-b\" \n"
1970	locat=normal; exit
1971	fi
1972
1973
1974	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1975	# DURCH BENUTZER ANDERWEITIG VEREINBART
1976	if [[ "$compiler_name" = "" ]]
1977	then
1978
1979	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1980	locat=compiler_name; exit
1981
1982	fi
1983
1984
1985	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1986	[[ $localhost = necriam ]] && compiler_name=mpif90
1987
1988
1989
1990	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1991	kennung=$RANDOM
1992	if [[ "$tmp_user_catalog" = "" ]]
1993	then
1994	if [[ $localhost = ibmh ]]
1995	then
1996	tmp_user_catalog=$SCRATCH
1997	elif [[ $localhost = nech ]]
1998	then
1999	tmp_user_catalog=$WRKSHR
2000	else
2001	tmp_user_catalog=/tmp
2002	fi
2003	fi
2004	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2005
2006
2007	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2008	# BESTIMMEN
2009	if [[ "$tmp_data_catalog" = "" ]]
2010	then
2011	if [[ $localhost = nech ]]
2012	then
2013	tmp_data_catalog=$WRKSHR/mrun_restart_data
2014	else
2015	tmp_data_catalog=/tmp/mrun_restart_data
2016	fi
2017	fi
2018
2019
2020	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2021	# ERSETZEN
2022	if [[ $do_remote = false && $do_compile = true ]]
2023	then
2024	eval fopts=\"$fopts\"
2025	eval lopts=\"$lopts\"
2026	fi
2027
2028
2029
2030	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2031	fopts="$fopts $netcdf_inc $dvr_inc"
2032	lopts="$lopts $netcdf_lib $dvr_lib"
2033	ROPTS="$ropts"
2034	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2035	then
2036	XOPT="-X $numprocs"
2037	fi
2038
2039
2040
2041	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2042	# GRAMM BENOETIGT
2043	done=false
2044	while [[ $done = false ]]
2045	do
2046	cputime=$cpumax
2047	if (( $cputime == 0 ))
2048	then
2049	if [[ $do_batch = true ]]
2050	then
2051	printf "\n +++ cpu-time is undefined"
2052	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2053	printf "\n >>> "
2054	read cputime 1>/dev/null 2>&1
2055	else
2056	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2057	fi
2058	else
2059	done=true
2060	fi
2061	cpumax=$cputime
2062	done
2063
2064	(( minuten = cputime / 60 ))
2065	(( sekunden = cputime - minuten * 60 ))
2066
2067
2068	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2069	if [[ $do_batch = true ]]
2070	then
2071	done=false
2072	while [[ $done = false ]]
2073	do
2074	if (( memory == 0 ))
2075	then
2076	printf "\n +++ memory demand is undefined"
2077	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2078	printf "\n >>> "
2079	read memory 1>/dev/null 2>&1
2080	else
2081	done=true
2082	fi
2083	done
2084	fi
2085
2086
2087	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2088	if [[ $do_remote = true && -z $remote_username ]]
2089	then
2090	while [[ -z $remote_username ]]
2091	do
2092	printf "\n +++ username on remote host \"$host\" is undefined"
2093	printf "\n >>> Please type username:"
2094	printf "\n >>> "
2095	read remote_username
2096	done
2097	mc="$mc -u$remote_username"
2098	fi
2099
2100
2101	# set module load command and export for subjob
2102	if [[ "$modules" != "" ]]
2103	then
2104	export module_calls="module load ${modules};"
2105	fi
2106
2107	# bugfix for wrong netcdf module
2108	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2109	then
2110	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2111	then
2112	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2113	fi
2114	fi
2115
2116
2117	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2118	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2119	then
2120	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2121	then
2122	mpilib=mpt
2123	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2124	then
2125	mpilib=mvapich
2126	fi
2127	fi
2128
2129
2130
2131	###########################################################################
2132	# HEADER-AUSGABE
2133	###########################################################################
2134
2135
2136	calltime=$(date)
2137	printf "\n"
2138	# [[ $silent = false ]] && clear
2139	printf "#--------------------------------------------------------------# \n"
2140	printf "\| $version$calltime \| \n"
2141	printf "\| \| \n"
2142	spalte1="called on:"; spalte2=$localhost_realname
2143	printf "\| $spalte1$spalte2 \| \n"
2144	if [[ $local_compile = false ]]
2145	then
2146	if [[ $do_remote = true ]]
2147	then
2148	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2149	else
2150	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2151	fi
2152	else
2153	spalte1="compiling test only!"; spalte2=""
2154	fi
2155	printf "\| $spalte1$spalte2 \| \n"
2156	if [[ -n $numprocs ]]
2157	then
2158	spalte1="number of PEs:"; spalte2=$numprocs
2159	printf "\| $spalte1$spalte2 \| \n"
2160	fi
2161	if [[ -n $tasks_per_node ]]
2162	then
2163	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2164	printf "\| $spalte1$spalte2 \| \n"
2165	fi
2166	if [[ $use_openmp = true ]]
2167	then
2168	spalte1="threads per task:"; spalte2="$threads_per_task"
2169	printf "\| $spalte1$spalte2 \| \n"
2170	fi
2171	printf "\| \| \n"
2172	if [[ $do_compile = true ]]
2173	then
2174	if [[ "$mopts" != "" ]]
2175	then
2176	spalte1="make options:"; spalte2=$mopts
2177	printf "\| $spalte1$spalte2 \| \n"
2178	zeile=$(echo "$mopts" \| cut -c41-)
2179	while [[ "$zeile" != "" ]]
2180	do
2181	spalte1=""
2182	spalte2=$zeile
2183	printf "\| $spalte1$spalte2 \| \n"
2184	zeile=$(echo "$zeile" \| cut -c41-)
2185	done
2186	fi
2187
2188	spalte1="cpp directives:"; spalte2=$cpp_options
2189	printf "\| $spalte1$spalte2 \| \n"
2190	zeile=$(echo "$cpp_options" \| cut -c41-)
2191	while [[ "$zeile" != "" ]]
2192	do
2193	spalte1=""
2194	spalte2=$zeile
2195	printf "\| $spalte1$spalte2 \| \n"
2196	zeile=$(echo "$zeile" \| cut -c41-)
2197	done
2198
2199	spalte1="compiler options:"; spalte2="$fopts"
2200	printf "\| $spalte1$spalte2 \| \n"
2201	zeile=$(echo "$fopts" \| cut -c41-)
2202	while [[ "$zeile" != "" ]]
2203	do
2204	spalte1=""
2205	spalte2=$zeile
2206	printf "\| $spalte1$spalte2 \| \n"
2207	zeile=$(echo "$zeile" \| cut -c41-)
2208	done
2209
2210	spalte1="linker options:"; spalte2=$lopts
2211	printf "\| $spalte1$spalte2 \| \n"
2212	zeile=$(echo "$lopts" \| cut -c41-)
2213	while [[ "$zeile" != "" ]]
2214	do
2215	spalte1=""
2216	spalte2=$zeile
2217	printf "\| $spalte1$spalte2 \| \n"
2218	zeile=$(echo "$zeile" \| cut -c41-)
2219	done
2220
2221	spalte1="modules to be load:"; spalte2=$modules
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$modules" \| cut -c41-)
2224	while [[ "$zeile" != "" ]]
2225	do
2226	spalte1=""
2227	spalte2=$zeile
2228	printf "\| $spalte1$spalte2 \| \n"
2229	zeile=$(echo "$zeile" \| cut -c41-)
2230	done
2231
2232	spalte1="main program":; spalte2=$mainprog
2233	printf "\| $spalte1$spalte2 \| \n"
2234	else
2235	spalte1=executable:; spalte2=$executable
2236	printf "\| $spalte1$spalte2 \| \n"
2237	fi
2238	printf "\| \| \n"
2239	spalte1="base name of files":; spalte2=$fname
2240	printf "\| $spalte1$spalte2 \| \n"
2241	if [[ $fname != $afname ]]
2242	then
2243	spalte1="base name of input files":; spalte2=$afname
2244	printf "\| $spalte1$spalte2 \| \n"
2245	fi
2246	spalte1="INPUT control list":; spalte2=$input_list
2247	printf "\| $spalte1$spalte2 \| \n"
2248	spalte1="OUTPUT control list":; spalte2=$output_list
2249	printf "\| $spalte1$spalte2 \| \n"
2250
2251	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2252	then
2253	spalte1="memory demand / PE":; spalte2="$memory MB"
2254	printf "\| $spalte1$spalte2 \| \n"
2255	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2256	printf "\| $spalte1$spalte2 \| \n"
2257	fi
2258
2259	if [[ $do_compile = true ]]
2260	then
2261	printf "\| \| \n"
2262	printf "\| Files to be compiled: \| \n"
2263	zeile=$source_list
2264	while [[ "$zeile" != "" ]]
2265	do
2266	spalte3=$zeile
2267	printf "\| $spalte3 \| \n"
2268	zeile=$(echo "$zeile" \| cut -c61-)
2269	done
2270	fi
2271	printf "#--------------------------------------------------------------#"
2272
2273
2274
2275	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2276	if [[ $do_trace = true ]]
2277	then
2278	(( i = 0 ))
2279	while (( i < iin ))
2280	do
2281	(( i = i + 1 ))
2282	if (( i == 1 ))
2283	then
2284	printf "\n\n >>> INPUT-file assignments:\n"
2285	fi
2286	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2287	done
2288	(( i = 0 ))
2289	while (( i < iout ))
2290	do
2291	(( i = i + 1 ))
2292	if (( i == 1 ))
2293	then
2294	printf "\n\n >>> OUTPUT-file assignments:\n"
2295	fi
2296	printf "\n ${localout[$i]} : ${pathout[$i]}"
2297	done
2298	(( i = 0 ))
2299	while (( i < iic ))
2300	do
2301	(( i = i + 1 ))
2302	if (( i == 1 ))
2303	then
2304	printf "\n\n >>> INPUT-commands:\n"
2305	fi
2306	printf "\n ${in_command[$i]}"
2307	done
2308	(( i = 0 ))
2309	while (( i < ioc ))
2310	do
2311	(( i = i + 1 ))
2312	if (( i == 1 ))
2313	then
2314	printf "\n\n >>> OUTPUT-commands:\n"
2315	fi
2316	printf "\n ${out_command[$i]}"
2317	done
2318	fi
2319
2320
2321	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2322	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2323	then
2324	antwort=dummy
2325	printf "\n\n"
2326	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2327	do
2328	printf " >>> everything o.k. (y/n) ? "
2329	read antwort
2330	done
2331	if [[ $antwort = n \|\| $antwort = N ]]
2332	then
2333	locat=user_abort; (( iec = 0 )); exit
2334	fi
2335	if [[ $do_batch = true ]]
2336	then
2337	printf " >>> batch-job will be created and submitted"
2338	else
2339	if [[ $local_compile = false ]]
2340	then
2341	printf " >>> MRUN will now continue to execute on this machine"
2342	else
2343	printf " >>> a test compilation will now be carried out on this machine"
2344	fi
2345	fi
2346	fi
2347
2348
2349
2350
2351	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2352	# CHENDE AKTIONEN DURCHGEFUEHRT
2353	if [[ $do_batch = false ]]
2354	then
2355
2356
2357	# TEMPORAEREN KATALOG ERZEUGEN
2358	mkdir -p $TEMPDIR
2359	chmod go+rx $TEMPDIR
2360	tmpcreate=true
2361
2362	# set striping on lustre file system
2363	# if [[ $localhost = lcsgih ]]
2364	# then
2365	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2366	# lfs getstripe $TEMPDIR
2367	# fi
2368
2369
2370	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2371	# TEMPORAERES VERZEICHNIS KOPIEREN
2372	if [[ $do_compile = true ]]
2373	then
2374
2375	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2376	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2377	if [[ $localhost = nech ]]
2378	then
2379	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2380	if mkdir -p $TEMPDIR_COMPILE
2381	then
2382	printf "\n *** \"$TEMPDIR_COMPILE\" "
2383	printf "\n is generated as temporary directory for cross compiling\n"
2384	else
2385	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2386	printf "\n needed for cross compilation failed"
2387	locat=compile
2388	exit
2389	fi
2390	else
2391	TEMPDIR_COMPILE=$TEMPDIR
2392	fi
2393
2394
2395	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2396	line=""
2397	grep "%depository_path" $config_file > tmp_mrun
2398	while read line
2399	do
2400	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2401	then
2402	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2403	then
2404	global_depository_path=`echo $line \| cut -d" " -s -f2`
2405	fi
2406	fi
2407	done < tmp_mrun
2408
2409	line=""
2410	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2411	while read line
2412	do
2413	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2414	then
2415	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2416	then
2417	local_depository_path=`echo $line \| cut -d" " -s -f2`
2418	fi
2419	fi
2420	done < tmp_mrun
2421
2422	if [[ "$local_depository_path" = "" ]]
2423	then
2424	if [[ "$global_depository_path" != "" ]]
2425	then
2426	local_depository_path=$global_depository_path
2427	else
2428	printf "\n\n +++ no depository path found in configuration file"
2429	printf "\n for local host \"$localhost\" "
2430	printf "\n please set \"\%depository_path\" in configuration file\n"
2431	locat=config_file; exit
2432	fi
2433	fi
2434	eval local_depository_path=$local_depository_path
2435	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2436	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2437
2438
2439	basename=`print $mainprog \| cut -f1 -d"."`
2440	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2441	if [[ ! -f $make_depository ]]
2442	then
2443	printf "\n"
2444	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2445	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2446	else
2447	cp $make_depository $TEMPDIR_COMPILE
2448	cd $TEMPDIR_COMPILE
2449	tar -xf $make_depository > /dev/null 2>&1
2450	cd - > /dev/null
2451	fi
2452
2453	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2454
2455	else
2456
2457	cp $executable ${TEMPDIR}/a.out
2458
2459	fi
2460
2461
2462	# WECHSEL IN TEMPORAEREN KATALOG
2463	cd $TEMPDIR
2464	printf "\n *** changed to temporary directory: $TEMPDIR"
2465
2466
2467	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2468	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2469	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2470	# ERMITTELN
2471	(( i = 0 ))
2472	while (( i < iout ))
2473	do
2474	(( i = i + 1 ))
2475	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2476	then
2477	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2478	else
2479	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2480	fi
2481	done
2482
2483
2484	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2485	if [[ $do_compile = true ]]
2486	then
2487
2488
2489	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2490	printf "\n\n\n *** compilation starts \n$striche\n"
2491	printf " *** compilation with make using following options:\n"
2492	printf " make depository: $make_depository"
2493	if [[ "$mopts" != "" ]]
2494	then
2495	printf " make options: $mopts\n"
2496	fi
2497	printf " compilername: $compiler_name\n"
2498	printf " compiler options: $fopts\n"
2499	printf " preprocessor directives: $cpp_options \n"
2500	printf " linker options: $lopts \n"
2501	if [[ "$modules" != "" ]]
2502	then
2503	printf " modules to be load: $modules \n"
2504	fi
2505	printf " source code files: $source_list \n"
2506
2507	if [[ $localhost = nech ]]
2508	then
2509	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2510	cp $TEMPDIR_COMPILE/a.out .
2511	[[ $? != 0 ]] && compile_error=true
2512	rm -rf $TEMPDIR_COMPILE
2513	elif [[ $localhost = ibmh ]]
2514	then
2515	printf " compiler is called via ssh on \"plogin1\" \n"
2516	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2517	[[ ! -f a.out ]] && compile_error=true
2518	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2519	elif [[ $localhost = lcsgib ]]
2520	then
2521	printf " compiler is called via ssh on \"bicegate0\" \n"
2522	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2523	[[ ! -f a.out ]] && compile_error=true
2524	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2525	elif [[ $localhost = lcsgih ]]
2526	then
2527	printf " compiler is called via ssh on \"hicegate0\" \n"
2528	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2529	[[ ! -f a.out ]] && compile_error=true
2530	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2531	else
2532	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2533	[[ "$module_calls" != "" ]] && eval $module_calls
2534	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2535	fi
2536
2537	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2538	then
2539	printf "\n +++ error occured while compiling or linking"
2540	locat=compile
2541
2542	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2543	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2544	# then
2545	exit
2546	# else
2547	# locat=normal
2548	# fi
2549	else
2550	printf "$striche\n *** compilation finished \n"
2551	fi
2552	fi
2553
2554
2555	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2556	if [[ $local_compile = true ]]
2557	then
2558	cd $HOME
2559	rm -rf $TEMPDIR
2560	locat=local_compile; exit
2561	fi
2562
2563
2564	# BEREITSTELLEN DER INPUT-DATEIEN
2565	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2566	(( i = 0 ))
2567	while (( i < iin ))
2568	do
2569	(( i = i + 1 ))
2570	if (( i == 1 ))
2571	then
2572	printf "\n\n *** providing INPUT-files:\n$striche"
2573	fi
2574
2575
2576	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2577	if [[ "${transin[$i]}" = unavailable ]]
2578	then
2579	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2580	then
2581	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2582	printf "\n is not available!"
2583	else
2584	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2585	printf "\n is not available!"
2586	fi
2587	continue
2588	fi
2589
2590	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2591	files_for_pes=false; datentyp=file
2592	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2593	then
2594	files_for_pes=true; datentyp=directory
2595	actionin[$i]=""
2596	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2597	then
2598	actionin[$i]=""
2599	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2600	then
2601	files_for_pes=true; datentyp=directory
2602	actionin[$i]="ar"
2603	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2604	then
2605	actionin[$i]="ar"
2606	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2607	then
2608	files_for_pes=true; datentyp=directory
2609	actionin[$i]="fl"
2610	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2611	then
2612	actionin[$i]="fl"
2613	fi
2614
2615	if [[ $files_for_pes = true ]]
2616	then
2617	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2618	else
2619	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2620	fi
2621
2622	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2623	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2624	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2625	# SERVER ZU HOLEN
2626	if [[ "${actionin[$i]}" = fl ]]
2627	then
2628	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2629	if [[ $files_for_pes = false ]]
2630	then
2631	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2632	then
2633	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2634	got_tmp[$i]=true
2635	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2636	then
2637	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2638	printf "\n *** trying to use backup copy in \"$WORK\" "
2639	cp $WORK/${frelin[$i]} ${localin[$i]}
2640	else
2641	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2642	printf "\n or \"$tmp_data_catalog\" does not exist!"
2643	printf "\n *** trying to get copy from archive"
2644	actionin[$i]=ar
2645	fi
2646	else
2647	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2648	then
2649	mkdir ${localin[$i]}
2650	cd $tmp_data_catalog/${frelin[$i]}
2651	for file in $(ls *)
2652	do
2653	ln $file $TEMPDIR/${localin[$i]}
2654	done
2655	cd $TEMPDIR
2656	got_tmp[$i]=true
2657	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2658	then
2659	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2660	printf "\n *** trying to use backup copy in \"$WORK\" "
2661	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2662	else
2663	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2664	printf "\n or \"$tmp_data_catalog\" does not exist!"
2665	printf "\n *** trying to get copy from archive"
2666	actionin[$i]=ar
2667	fi
2668	fi
2669	fi
2670
2671
2672	# DATEI LIEGT AUF ARCHIV-SERVER
2673	if [[ "${actionin[$i]}" = ar ]]
2674	then
2675
2676	if [[ $files_for_pes = false ]]
2677	then
2678	printf "\n file will be restored from archive-system ($archive_system)!"
2679	else
2680	printf "\n directory will be restored from archive-system ($archive_system)!"
2681	fi
2682
2683	file_restored=false
2684
2685	if [[ $archive_system = asterix ]]
2686	then
2687	do_stagein=true
2688	(( stagein_anz = 0 ))
2689	while [[ $do_stagein = true ]]
2690	do
2691	if [[ $files_for_pes = false ]]
2692	then
2693	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2694	else
2695	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2696	fi
2697	cat STAGEIN_OUTPUT
2698	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2699	then
2700	file_restored=true
2701	do_stagein=false
2702	else
2703	(( stagein_anz = stagein_anz + 1 ))
2704	if (( stagein_anz == 10 ))
2705	then
2706	printf "\n +++ stagein stoped after 10 tries"
2707	locat=stage
2708	exit
2709	fi
2710	printf "\n +++ restoring from archive failed, trying again:"
2711	sleep 900
2712	fi
2713	done
2714	elif [[ $archive_system = DMF ]]
2715	then
2716	if [[ $files_for_pes = false ]]
2717	then
2718	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2719	locat=DMF
2720	exit
2721	else
2722	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2723	cp -r $ARCHIVE/${frelin[$i]} $PWD
2724	file_restored=true
2725	fi
2726	elif [[ $archive_system = tivoli ]]
2727	then
2728	if [[ $files_for_pes = false ]]
2729	then
2730	if [[ $localhost = lcsgih ]]
2731	then
2732	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2733	else
2734	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2735	fi
2736	else
2737	(( inode = 0 ))
2738	while (( inode < nodes ))
2739	do
2740	if [[ $localhost = lcsgih ]]
2741	then
2742	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2743	else
2744	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2745	fi
2746	(( inode = inode + 1 ))
2747	done
2748	fi
2749	file_restored=true
2750	elif [[ $archive_system = ut ]]
2751	then
2752	if [[ $files_for_pes = false ]]
2753	then
2754	cp $UT/${frelin[$i]} .
2755	else
2756	(( inode = 0 ))
2757	while (( inode < nodes ))
2758	do
2759	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2760	(( inode = inode + 1 ))
2761	done
2762	fi
2763	file_restored=true
2764	else
2765	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2766	locat=rearchive
2767	exit
2768	fi
2769
2770	if [[ $file_restored = true ]]
2771	then
2772
2773	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2774	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2775	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2776	if [[ $files_for_pes = false ]]
2777	then
2778	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2779	else
2780	mkdir $tmp_data_catalog/${frelin[$i]}
2781	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2782	fi
2783	got_tmp[$i]=true
2784
2785	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2786	mv ${frelin[$i]} ${localin[$i]}
2787
2788	fi
2789	fi
2790
2791
2792	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2793	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2794	then
2795
2796	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2797	then
2798
2799	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2800	printf "\n file will be provided for $numprocs processors"
2801	mkdir ${localin[$i]}
2802	ival=$numprocs
2803	(( ii = 0 ))
2804	while (( ii <= ival-1 ))
2805	do
2806	if (( ii < 10 ))
2807	then
2808	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2809	elif (( ii < 100 ))
2810	then
2811	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2812	elif (( ii < 1000 ))
2813	then
2814	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2815	else
2816	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2817	fi
2818	(( ii = ii + 1 ))
2819	done
2820
2821	else
2822
2823	if [[ $files_for_pes = true ]]
2824	then
2825
2826	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2827	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2828	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2829	# PER MOVE UMBENANNT WERDEN
2830	printf "\n providing $numprocs files for the respective processors"
2831	mkdir ${localin[$i]}
2832	if [[ $link_local_input = true ]]
2833	then
2834	printf " using ln -f\n"
2835	cd ${absnamein[$i]}
2836	for file in $(ls *)
2837	do
2838	ln -f $file ${localin[$i]}
2839	done
2840	cd $TEMPDIR
2841	fi
2842	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2843	if [[ ! -f "${localin[$i]}/_0000" ]]
2844	then
2845	if [[ $link_local_input = true ]]
2846	then
2847	printf " ln failed for .../_0000, using cp...\n"
2848	fi
2849	cp -r ${absnamein[$i]}/* ${localin[$i]}
2850	fi
2851
2852	else
2853	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2854	if [[ $link_local_input = true ]]
2855	then
2856	printf " using ln -f\n"
2857	ln -f ${absnamein[$i]} ${localin[$i]}
2858	fi
2859	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2860	if [[ ! -f "${localin[$i]}" ]]
2861	then
2862	if [[ $link_local_input = true ]]
2863	then
2864	printf " ln failed, using cp...\n"
2865	fi
2866	cp ${absnamein[$i]} ${localin[$i]}
2867	fi
2868	fi
2869	fi
2870	fi
2871
2872	done
2873	if (( i != 0 ))
2874	then
2875	printf "\n$striche\n *** all INPUT-files provided \n"
2876	fi
2877
2878
2879	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2880	(( i = 0 ))
2881	while (( i < iic ))
2882	do
2883	(( i = i + 1 ))
2884	if (( i == 1 ))
2885	then
2886	printf "\n\n *** execution of INPUT-commands:\n$striche"
2887	fi
2888	printf "\n >>> ${in_command[$i]}"
2889	eval ${in_command[$i]}
2890	if (( i == iic ))
2891	then
2892	printf "\n$striche\n"
2893	fi
2894	done
2895
2896
2897	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2898	cpurest=${cpumax}.
2899
2900
2901	# START DVR STREAMING SERVER
2902	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2903	then
2904	if [[ "$dvr_server" != "" ]]
2905	then
2906
2907	printf "\n\n *** preparing the dvr streaming server configuration file"
2908
2909	# Check, if a dvr server is already running
2910	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2911	if [[ "$running_dvrserver_id" != "" ]]
2912	then
2913
2914	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2915	printf "\n This server is used instead starting a new one!"
2916	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2917
2918	else
2919
2920	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2921	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2922	then
2923	cp ${PALM_BIN}/.dvrserver.config .
2924
2925	# Entering the BASEDIR, UID and GID into this file
2926	user_id=`id -u`
2927	group_id=`id -g`
2928	# & is needed as seperator, because TEMPDIR contains /
2929	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2930	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2931	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2932	mv .dvrserver.3 .dvrserver.config
2933	rm .dvrserver.1 .dvrserver.2
2934
2935	# Start dvr server in background, get his id and print on terminal
2936	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2937	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2938	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2939	local_dvrserver_running=.TRUE.
2940	else
2941	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2942	printf "\n \"$PALM_BIN\" "
2943	locat=dvr
2944	exit
2945	fi
2946
2947	fi
2948
2949	else
2950	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2951	fi
2952	fi
2953
2954
2955	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2956	# LESEN VON PALM)
2957	cat > ENVPAR << %%END%%
2958	&envpar run_identifier = '$fname', host = '$localhost',
2959	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2960	maximum_cpu_time_allowed = ${cpumax}.,
2961	revision = '$global_revision',
2962	local_dvrserver_running = $local_dvrserver_running /
2963
2964	%%END%%
2965
2966
2967	# PROGRAMMSTART
2968	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2969	PATH=$PATH:$TEMPDIR
2970
2971	# MPI debug option (argument checking, slows down execution due to increased latency)
2972	if [[ "$mpi_debug" = true ]]
2973	then
2974	export MPI_CHECK_ARGS=1
2975	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2976	fi
2977
2978	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2979	then
2980	if [[ "$ENVIRONMENT" = BATCH ]]
2981	then
2982	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2983	then
2984	printf "\n +++ debug is allowed in interactive mode only"
2985	locat=debug
2986	exit
2987	fi
2988	fi
2989	if [[ $localhost = decalpha ]]
2990	then
2991	dxladebug a.out
2992	elif [[ $localhost = ibmh ]]
2993	then
2994
2995	# SETUP THE IBM MPI ENVIRONMENT
2996	export MP_SHARED_MEMORY=yes
2997	export AIXTHREADS_SCOPE=S
2998	export OMP_NUM_THREADS=$threads_per_task
2999	export AUTHSTATE=files
3000	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3001
3002	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3003	export MP_ADAPTER_USE=shared
3004	export MP_CPU_USE=multiple
3005	export MP_TIMEOUT=1200
3006
3007	unset MP_TASK_AFFINITY
3008
3009	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3010	#(( ii = 1 ))
3011	#while (( ii <= $numprocs ))
3012	#do
3013	# echo $localhost_realname >> hostfile
3014	# (( ii = ii + 1 ))
3015	#done
3016	#export MP_HOSTFILE=hostfile
3017
3018	if [[ "$LOADLBATCH" = yes ]]
3019	then
3020	totalview poe a.out $ROPTS
3021	else
3022	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3023	export TVDSVRLAUNCHCMD=ssh
3024	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3025	fi
3026	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3027	then
3028	# CURRENTLY NO DEBUGGER ON LCSGI
3029	if [[ $run_coupled_model = true ]]
3030	then
3031	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3032	locat=debug
3033	exit
3034	else
3035	echo "no_coupling" > runfile_atmos
3036	fi
3037	(( ii = $numprocs / $threads_per_task ))
3038	export OMP_NUM_THREADS=$threads_per_task
3039	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3040	if [[ $threads_per_task != 1 ]]
3041	then
3042	printf "\n threads per task: $threads_per_task"
3043	fi
3044	printf "\n\n"
3045	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3046	then
3047	# export MPI_LAUNCH_TIMEOUT=360
3048	if [[ "$totalview" = true ]]
3049	then
3050	printf "\n running totalview debugger"
3051	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3052	else
3053	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3054	fi
3055	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3056	then
3057	# ulimit -s 300000 # A too large stack size causes problems
3058	# export MV2_NUM_PORTS=2
3059	# export MV2_CPU_MAPPING=0:1:2:3
3060	if [[ "$totalview" = true ]]
3061	then
3062	printf "\n running totalview debugger"
3063	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3064	else
3065	mpiexec ./a.out $ROPTS < runfile_atmos
3066	fi
3067	fi
3068	else
3069	printf "\n +++ no debug available on \"$localhost\" "
3070	printf "\n or not implemented in mrun so far"
3071	locat=debug
3072	exit
3073	fi
3074
3075	# end debug mode
3076	else
3077
3078	# normal execution
3079	if [[ -n $numprocs ]]
3080	then
3081	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3082	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3083	then
3084	# SETUP THE IBM MPI ENVIRONMENT
3085	if [[ $host != ibmh ]]
3086	then
3087	export MP_SHARED_MEMORY=yes
3088	export AIXTHREAD_SCOPE=S
3089	export OMP_NUM_THREADS=$threads_per_task
3090	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3091	export AUTHSTATE=files
3092	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3093	# export MP_PRINTENV=yes
3094
3095	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3096	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3097	export MP_WAIT_MODE=poll
3098	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3099	fi
3100	if [[ "$LOADLBATCH" = yes ]]
3101	then
3102	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3103	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3104	then
3105	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3106	else
3107	if [[ $run_coupled_model = false ]]
3108	then
3109	if [[ "$ocean_file_appendix" = true ]]
3110	then
3111	echo "precursor_ocean" > runfile_atmos
3112	else
3113	echo "precursor_atmos" > runfile_atmos
3114	fi
3115	else
3116	(( iia = $numprocs_atmos / $threads_per_task ))
3117	(( iio = $numprocs_ocean / $threads_per_task ))
3118	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3119	printf "\n using $coupled_mode coupling"
3120	printf "\n\n"
3121	echo "coupled_run $iia $iio" > runfile_atmos
3122	fi
3123	poe ./a.out $ROPTS < runfile_atmos
3124	fi
3125	else
3126	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3127	then
3128	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3129	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3130	then
3131	if [[ -f $hostfile ]]
3132	then
3133	cp $hostfile hostfile
3134	else
3135	(( ii = 1 ))
3136	while (( ii <= $numprocs ))
3137	do
3138	echo $localhost_realname >> hostfile
3139	(( ii = ii + 1 ))
3140	done
3141	fi
3142	export MP_HOSTFILE=hostfile
3143	if [[ $run_coupled_model = false ]]
3144	then
3145	if [[ "$ocean_file_appendix" = true ]]
3146	then
3147	echo "precursor_ocean" > runfile_atmos
3148	else
3149	echo "precursor_atmos" > runfile_atmos
3150	fi
3151	else
3152	(( iia = $numprocs_atmos / $threads_per_task ))
3153	(( iio = $numprocs_ocean / $threads_per_task ))
3154	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3155	printf "\n using $coupled_mode coupling"
3156	printf "\n\n"
3157	echo "coupled_run $iia $iio" > runfile_atmos
3158	fi
3159	if [[ $localhost = ibmy ]]
3160	then
3161	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3162	else
3163	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3164	fi
3165
3166	else
3167	if [[ "$host_file" = "" ]]
3168	then
3169	printf "\n +++ no hostfile given in configuration file"
3170	locat=config_file
3171	exit
3172	else
3173	eval host_file=$host_file
3174	fi
3175	export MP_HOSTFILE=$host_file
3176	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3177	fi
3178	fi
3179	elif [[ $host = nech \|\| $host = necriam ]]
3180	then
3181	(( ii = nodes ))
3182	if [[ $ii = 1 ]]
3183	then
3184	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3185	export MPIPROGINF=YES
3186	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3187	echo "*** execution on single node with mpirun"
3188	mpirun -np $numprocs ./a.out $ROPTS
3189	else
3190	(( i = 0 ))
3191	while (( i < ii ))
3192	do
3193	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3194	(( i = i + 1 ))
3195	done
3196
3197	echo "#!/bin/sh" > mpi_exec_shell
3198	echo " " >> mpi_exec_shell
3199	echo "set -u" >> mpi_exec_shell
3200	echo "F_ERRCNT=0" >> mpi_exec_shell
3201	echo "MPIPROGINV=YES" >> mpi_exec_shell
3202	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3203	echo "cpurest=$cpurest" >> mpi_exec_shell
3204	echo "fname=$fname" >> mpi_exec_shell
3205	echo "localhost=$localhost" >> mpi_exec_shell
3206	echo "return_addres=$return_addres" >> mpi_exec_shell
3207	echo "return_username=$return_username" >> mpi_exec_shell
3208	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3209	echo "write_binary=$write_binary" >> mpi_exec_shell
3210	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3211	echo " " >> mpi_exec_shell
3212	echo "export F_ERRCNT" >> mpi_exec_shell
3213	echo "export MPIPROGINV" >> mpi_exec_shell
3214	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3215	echo "export cpurest" >> mpi_exec_shell
3216	echo "export fname" >> mpi_exec_shell
3217	echo "export localhost" >> mpi_exec_shell
3218	echo "export return_addres" >> mpi_exec_shell
3219	echo "export return_username" >> mpi_exec_shell
3220	echo "export tasks_per_node" >> mpi_exec_shell
3221	echo "export write_binary" >> mpi_exec_shell
3222	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3223	echo " " >> mpi_exec_shell
3224	echo "exec ./a.out" >> mpi_exec_shell
3225
3226	chmod u+x mpi_exec_shell
3227	export MPIPROGINF=YES
3228	mpirun -f multinode_config &
3229	wait
3230
3231	fi
3232	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3233	then
3234
3235	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3236	# DOES NOT EXIST
3237	if [[ $host != lcsgih && $host != lcsgib ]]
3238	then
3239	if [[ -f $hostfile ]]
3240	then
3241	cp $hostfile hostfile
3242	else
3243	(( ii = 1 ))
3244	while (( ii <= $numprocs / $threads_per_task ))
3245	do
3246	echo $localhost_realname >> hostfile
3247	(( ii = ii + 1 ))
3248	done
3249	fi
3250	eval zeile=\"`head -n $ii hostfile`\"
3251	printf "\n *** running on: $zeile"
3252	fi
3253
3254	(( ii = $numprocs / $threads_per_task ))
3255	export OMP_NUM_THREADS=$threads_per_task
3256	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3257	if [[ $threads_per_task != 1 ]]
3258	then
3259	# increase stack size to unlimited, because large runs
3260	# may abort otherwise
3261	ulimit -Ss unlimited
3262	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3263	fi
3264	if [[ $run_coupled_model = false ]]
3265	then
3266	if [[ "$ocean_file_appendix" = true ]]
3267	then
3268	echo "precursor_ocean" > runfile_atmos
3269	else
3270	echo "precursor_atmos" > runfile_atmos
3271	fi
3272	printf "\n\n"
3273	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3274	then
3275	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3276	then
3277	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3278	# export MPI_DSM_DISTRIBUTE=1
3279	# MPI_DSM_CPULIST: pin MPI processes to cores
3280	if [[ $use_openmp = false ]]
3281	then
3282	if [[ "$sgi_feature" = ice2 ]]
3283	then
3284	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3285	else
3286	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3287	fi
3288	else
3289	unset MPI_DSM_CPULIST
3290	fi
3291	# MPI_IB_RAILS: use both IB rails on ICE2
3292	export MPI_BUFS_PER_HOST=512
3293	export MPI_IB_RAILS=2
3294	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3295	export MPI_CONNECTIONS_THRESHOLD=8192
3296	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3297	export MPI_TYPE_DEPTH=20
3298	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3299	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3300
3301	# next is test for openmp usage
3302	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3303	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3304	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3305	then
3306	export MV2_NUM_PORTS=2
3307	# The default setting of MV2_CPU_MAPPING gives best results
3308	# export MV2_ENABLE_AFFINITY=1
3309	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3310	# if [[ "$sgi_feature" = ice2 ]]
3311	# then
3312	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3313	# else
3314	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3315	# fi
3316	[[ $use_openmp = true ]] && unset MV2_CPU_MAPPING
3317	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3318	if [[ $use_openmp = true ]]
3319	then
3320	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3321	else
3322	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3323	fi
3324	fi
3325	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3326	then
3327	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3328	else
3329	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3330	fi
3331	else
3332
3333	# currently there is no full MPI-2 support on ICE and XT4
3334	(( iia = $numprocs_atmos / $threads_per_task ))
3335	(( iio = $numprocs_ocean / $threads_per_task ))
3336	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3337	printf "\n using $coupled_mode coupling"
3338	printf "\n\n"
3339
3340	if [[ $coupled_mode = "mpi2" ]]
3341	then
3342	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3343	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3344	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3345	then
3346
3347	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3348	then
3349	# export MPI_LAUNCH_TIMEOUT=360
3350	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3351	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3352	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3353	then
3354	# ulimit -s 300000 # A too large stack size causes problems
3355	# export MV2_NUM_PORTS=2
3356	# export MV2_CPU_MAPPING=0:1:2:3
3357	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3358	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3359	fi
3360
3361	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3362	then
3363
3364	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3365	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3366
3367	else
3368	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3369	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3370	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3371	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3372	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3373	fi
3374	wait
3375
3376	else
3377
3378	echo "coupled_run $iia $iio" > runfile_atmos
3379	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3380	then
3381
3382	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3383	then
3384	# export MPI_LAUNCH_TIMEOUT=360
3385	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3386	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3387	then
3388	# ulimit -s 300000 # A too large stack size causes problems
3389	# export MV2_NUM_PORTS=2
3390	# export MV2_CPU_MAPPING=0:1:2:3
3391	mpiexec ./a.out $ROPTS < runfile_atmos
3392	fi
3393
3394	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3395	then
3396
3397	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3398
3399	elif [[ $host = lck ]]
3400	then
3401	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3402	fi
3403	wait
3404	fi
3405
3406	fi
3407	elif [[ $host = decalpha ]]
3408	then
3409	dmpirun -np $numprocs a.out $ROPTS
3410	elif [[ $host = lckyoto ]]
3411	then
3412	set -xv
3413	export P4_RSHCOMMAND=plesh
3414	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3415	if [[ "$ENVIRONMENT" = BATCH ]]
3416	then
3417	if [[ "$cond2" = fujitsu ]]
3418	then
3419	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3420	elif [[ "cond2" = pgi ]]
3421	then
3422	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3423	else
3424	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3425	fi
3426	else
3427	if [[ "$cond2" = "" ]]
3428	then
3429	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3430	else
3431	mpirun -np $numprocs ./a.out $ROPTS
3432	fi
3433	fi
3434	set +xv
3435	elif [[ $host = lctit ]]
3436	then
3437	mpirun -np $numprocs -hostfile $PBS_NODEFILE ./a.out $ROPTS
3438	else
3439	mpprun -n $numprocs a.out $ROPTS
3440	fi
3441	[[ $? != 0 ]] && execution_error=true
3442
3443
3444	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3445	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3446	then
3447	apprentice
3448	fi
3449	else
3450	a.out $ROPTS
3451	fi
3452	fi
3453	if [[ $? != 0 \|\| $execution_error = true ]]
3454	then
3455
3456	# ABBRUCH BEI LAUFZEITFEHLER
3457	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3458	printf "\n +++ runtime error occured"
3459	locat=execution
3460	exit
3461	else
3462	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3463	printf "\n$striche\n *** execution finished \n"
3464
3465	# Stop the dvr streaming server and process the dvr output in order
3466	# to create dvrs- and html-files containing all streams
3467	if [[ "$dvrserver_id" != "" ]]
3468	then
3469	kill $dvrserver_id
3470	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3471
3472	# If there is a directory, data have been output by the
3473	# streaming server. Otherwise, user has chosen dvrp_output=local
3474	if [[ -d DATA_DVR ]]
3475	then
3476
3477	# Add the current dvr configuration file to the dvr output
3478	# directory
3479	cp .dvrserver.config DATA_DVR
3480
3481	# Process the dvr output (option -s for also generating
3482	# sequence mode data)
3483	process_dvr_output -d DATA_DVR -f $fname -s
3484
3485	else
3486
3487	# Process the local output
3488	process_dvr_output -l -d DATA_DVR -f $fname
3489
3490	fi
3491
3492	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3493	then
3494
3495	# Process dvr output generated in local mode (dvrp_output=local)
3496	process_dvr_output -l -d DATA_DVR -f $fname
3497
3498	fi
3499	fi
3500
3501
3502
3503	# Call of combine_plot_fields in order to merge single files written
3504	# by each PE into one file.
3505	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3506	then
3507	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3508	printf "\n 2d- and/or 3d-data may be incomplete!"
3509	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3510	else
3511	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3512	combine_plot_fields${block}.x
3513	fi
3514
3515
3516
3517	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3518	(( i = 0 ))
3519	while (( i < ioc ))
3520	do
3521	(( i = i + 1 ))
3522	if (( i == 1 ))
3523	then
3524	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3525	fi
3526	printf "\n >>> ${out_command[$i]}"
3527	eval ${out_command[$i]}
3528	if (( i == ioc ))
3529	then
3530	printf "\n$striche\n"
3531	fi
3532	done
3533
3534
3535	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3536	if [[ $do_trace = true ]]
3537	then
3538	printf "\n\n"
3539	ls -al
3540	fi
3541
3542
3543
3544	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3545	(( i = 0 ))
3546	while (( i < iout ))
3547	do
3548	(( i = i + 1 ))
3549	if (( i == 1 ))
3550	then
3551	printf "\n\n *** saving OUTPUT-files:\n$striche"
3552	fi
3553
3554	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3555	files_for_pes=false; filetyp=file
3556	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3557	then
3558	files_for_pes=true; filetyp=directory
3559	actionout[$i]=""
3560	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3561	then
3562	actionout[$i]=""
3563	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3564	then
3565	files_for_pes=true; filetyp=directory
3566	actionout[$i]="ar"
3567	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3568	then
3569	actionout[$i]="ar"
3570	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3571	then
3572	files_for_pes=true; filetyp=directory
3573	actionout[$i]="fl"
3574	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3575	then
3576	actionout[$i]="fl"
3577	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3578	then
3579	files_for_pes=true; filetyp=directory
3580	actionout[$i]="tr"
3581	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3582	then
3583	actionout[$i]="tr"
3584	fi
3585
3586	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3587	then
3588	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3589	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3590	then
3591	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3592	else
3593
3594
3595	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3596	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3597	# REMOTE-RECHNUNGEN
3598	if [[ "${actionout[$i]}" = tr ]]
3599	then
3600	if [[ $localhost != $fromhost ]]
3601	then
3602	if [[ $files_for_pes = false ]]
3603	then
3604	cps=""
3605	cst=""
3606	else
3607	cps=-c
3608	cst="/"
3609	fi
3610	if [[ $localhost = nech ]]
3611	then
3612
3613	# TRANSFER IN EIGENSTAENDIGEM JOB
3614	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3615	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3616	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3617	if [[ $files_for_pes = false ]]
3618	then
3619	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3620	else
3621	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3622	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3623	fi
3624
3625	echo "set -x" > transfer_${localout[$i]}
3626	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3627
3628	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3629	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3630	printf "\n or higher cycle\n"
3631	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3632
3633	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3634
3635	if [[ $localhost = nech ]]
3636	then
3637	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3638	else
3639	if [[ "$LOGNAME" = b323013 ]]
3640	then
3641	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3642	else
3643	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3644	fi
3645	fi
3646
3647	else
3648
3649	# TRANSFER INNERHALB DIESES JOBS
3650	transfer_failed=false
3651	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3652	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3653	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3654	[[ $? != 0 ]] && transfer_failed=true
3655
3656	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3657	# LOKALER MASCHINE ANLEGEN
3658	if [[ $transfer_failed = true ]]
3659	then
3660	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3661	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3662
3663	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3664	# ANLEGEN.
3665	eval local_catalog=${pathout[$i]}
3666	if [[ ! -d $local_catalog ]]
3667	then
3668	printf " *** local directory does not exist. Trying to create:\n"
3669	printf " $local_catalog \n"
3670	mkdir -p $local_catalog
3671	fi
3672	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3673	transfer_problems=true
3674	fi
3675	fi
3676	else
3677
3678	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3679	actionout[$i]=""
3680	fi
3681	fi
3682
3683
3684	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3685	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3686	# REMOTE-RECHNUNGEN
3687	if [[ "${actionout[$i]}" = tra ]]
3688	then
3689	if [[ $localhost != $fromhost ]]
3690	then
3691	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3692	then
3693
3694	# TRANSFER IN EIGENSTAENDIGEM JOB
3695	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3696	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3697	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3698	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3699
3700	echo "set -x" > transfer_${localout[$i]}
3701	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3702
3703	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3704	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3705	printf "\n or higher cycle\n"
3706	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3707
3708	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3709
3710	if [[ $localhost = nech ]]
3711	then
3712	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3713	else
3714	if [[ $LOGNAME = b323013 ]]
3715	then
3716	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3717	else
3718	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3719	fi
3720	fi
3721
3722	else
3723
3724	# TRANSFER INNERHALB DIESES JOBS
3725	transfer_failed=false
3726	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3727	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3728	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3729	[[ $? != 0 ]] && transfer_failed=true
3730
3731	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3732	# LOKALER MASCHINE ANLEGEN
3733	if [[ $transfer_failed = true ]]
3734	then
3735	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3736	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3737
3738	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3739	# ANLEGEN
3740	eval local_catalog=${pathout[$i]}
3741	if [[ ! -d $local_catalog ]]
3742	then
3743	printf " *** local directory does not exist. Trying to create:\n"
3744	printf " $local_catalog \n"
3745	mkdir -p $local_catalog
3746	fi
3747
3748	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3749	transfer_problems=true
3750	fi
3751	fi
3752	else
3753
3754	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3755	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3756	actionout[$i]=a
3757	fi
3758	fi
3759
3760
3761	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3762	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3763	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3764	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3765	if [[ "${actionout[$i]}" = fl ]]
3766	then
3767	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3768	chmod g+rx $tmp_data_catalog
3769	if [[ $files_for_pes = false ]]
3770	then
3771	printf "\n >>> OUTPUT: ${localout[$i]} to"
3772	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3773	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3774	else
3775	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3776	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3777	mkdir $tmp_data_catalog/${frelout[$i]}
3778	cd ${localout[$i]}
3779	for file in $(ls *)
3780	do
3781	ln -f $file $tmp_data_catalog/${frelout[$i]}
3782	done
3783	cd $TEMPDIR
3784	fi
3785
3786
3787	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3788	if [[ $store_on_archive_system = true ]]
3789	then
3790
3791	if [[ $archive_system = asterix ]]
3792	then
3793	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3794	if [[ $files_for_pes = false ]]
3795	then
3796	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3797	else
3798	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3799	fi
3800	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3801	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3802	echo "then" >> archive_${frelout[$i]}
3803	echo " do_stageout=false" >> archive_${frelout[$i]}
3804	echo "else" >> archive_${frelout[$i]}
3805	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3806	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3807	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3808	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3809	if [[ $files_for_pes = false ]]
3810	then
3811	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3812	else
3813	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3814	fi
3815	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3816	echo "fi" >> archive_${frelout[$i]}
3817	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3818	elif [[ $archive_system = DMF ]]
3819	then
3820	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3821	if [[ $files_for_pes = false ]]
3822	then
3823	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3824	locat=DMF
3825	exit
3826	else
3827	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3828	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3829	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3830	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3831	fi
3832	elif [[ $archive_system = tivoli ]]
3833	then
3834	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3835	if [[ $files_for_pes = false ]]
3836	then
3837	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3838	echo "set -x" >> archive_${frelout[$i]}
3839	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3840	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3841	else
3842
3843	echo "set -x" >> archive_${frelout[$i]}
3844	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3845	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3846	cd $tmp_data_catalog
3847	all_files=`ls -1 ${frelout[$i]}/*`
3848	cd - > /dev/null
3849	(( inode = 0 ))
3850	(( tp1 = tasks_per_node + 1 ))
3851	while (( inode < nodes ))
3852	do
3853	# echo "*** all_files = \"$all_files\" "
3854	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3855	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3856	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3857	# echo "*** files = \"$files\" "
3858	# echo "*** all_files = \"$all_files\" "
3859	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3860	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3861	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3862	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3863	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3864	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3865	(( inode = inode + 1 ))
3866	done
3867	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3868	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3869	fi
3870	elif [[ $archive_system = ut ]]
3871	then
3872	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3873	if [[ $files_for_pes = false ]]
3874	then
3875	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3876	echo "set -x" >> archive_${frelout[$i]}
3877	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3878	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3879	else
3880
3881	echo "set -x" >> archive_${frelout[$i]}
3882	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3883	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3884	cd $tmp_data_catalog
3885	all_files=`ls -1 ${frelout[$i]}/*`
3886	cd - > /dev/null
3887	(( inode = 0 ))
3888	(( tp1 = tasks_per_node + 1 ))
3889	while (( inode < nodes ))
3890	do
3891	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3892	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3893	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3894	(( inode = inode + 1 ))
3895	done
3896	fi
3897	elif [[ $archive_system = none ]]
3898	then
3899	printf " +++ archiving on $localhost not available!\n"
3900	fi
3901
3902	if [[ $archive_system != none ]]
3903	then
3904	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3905	then
3906	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3907	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3908	elif [[ $localhost = nech ]]
3909	then
3910	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3911	fi
3912	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3913	fi
3914	else
3915	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3916	fi
3917
3918
3919	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3920	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3921	if [[ $files_for_pes = false ]]
3922	then
3923	cat /dev/null > ${pathout[$i]}
3924	else
3925	mkdir -p ${pathout[$i]}
3926	fi
3927
3928	fi
3929
3930
3931	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3932	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3933	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3934	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3935	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3936	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3937	if [[ "${actionout[$i]}" = ar ]]
3938	then
3939	if [[ $files_for_pes = false ]]
3940	then
3941	printf "\n >>> OUTPUT: ${localout[$i]} to"
3942	printf "\n ${pathout[$i]}"
3943	printf "\n File will be copied to archive-system ($archive_system) !\n"
3944	else
3945	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3946	printf "\n ${pathout[$i]}"
3947	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3948	fi
3949	mv ${localout[$i]} ${frelout[$i]}
3950
3951	file_saved=false
3952
3953	if [[ $archive_system = asterix ]]
3954	then
3955	do_stageout=true
3956	(( stageout_anz = 0 ))
3957	while [[ $do_stageout = true ]]
3958	do
3959	if [[ $files_for_pes = false ]]
3960	then
3961	stageout ${frelout[$i]} > STAGE_OUTPUT
3962	else
3963	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3964	fi
3965	cat STAGE_OUTPUT
3966	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3967	then
3968	file_saved=true
3969	do_stageout=false
3970	else
3971	if [[ $files_for_pes = false ]]
3972	then
3973	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3974	else
3975	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3976	fi
3977	(( stageout_anz = stageout_anz + 1 ))
3978	if (( stageout_anz == 10 ))
3979	then
3980	printf "\n +++ stoped after 10 unsuccessful tries!"
3981	archive_save=false
3982	do_stageout=false
3983	else
3984	printf "\n *** new try to store on archive after 15 min:"
3985	sleep 900
3986	fi
3987	fi
3988	done
3989	elif [[ $archive_system = DMF ]]
3990	then
3991	if [[ $files_for_pes = false ]]
3992	then
3993	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3994	locat=DMF
3995	exit
3996	else
3997	rm -rf $ARCHIVE/${frelout[$i]}
3998	cp -r ${frelout[$i]} $ARCHIVE
3999	fi
4000	file_saved=true
4001	elif [[ $archive_system = tivoli ]]
4002	then
4003	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4004	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4005	# GELEGT WERDEN
4006	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4007	chmod g+rx $tmp_data_catalog
4008	if [[ $files_for_pes = false ]]
4009	then
4010	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4011	else
4012	mkdir $tmp_data_catalog/${frelout[$i]}
4013	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4014	fi
4015
4016	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4017	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4018	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4019	if [[ $files_for_pes = false ]]
4020	then
4021	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4022	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4023	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4024	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4025	else
4026	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4027	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4028	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4029	fi
4030
4031	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4032	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4033	file_saved=true
4034
4035	elif [[ $archive_system = ut ]]
4036	then
4037	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4038	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4039	# GELEGT WERDEN
4040	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4041	chmod g+rx $tmp_data_catalog
4042	if [[ $files_for_pes = false ]]
4043	then
4044	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4045	else
4046	mkdir $tmp_data_catalog/${frelout[$i]}
4047	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4048	fi
4049
4050	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4051	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4052	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4053	if [[ $files_for_pes = false ]]
4054	then
4055	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4056	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4057	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4058	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4059	else
4060	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4061	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4062	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4063	fi
4064
4065	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4066	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4067	file_saved=true
4068
4069	else
4070	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4071	archive_save=false
4072	fi
4073	if [[ $file_saved = true ]]
4074	then
4075	if [[ $files_for_pes = false ]]
4076	then
4077	cat /dev/null > ${pathout[$i]}
4078	else
4079	mkdir -p ${pathout[$i]}
4080	fi
4081	fi
4082	fi
4083
4084	# APPEND AUF LOKALER MASCHINE
4085	if [[ "${actionout[$i]}" = "a" ]]
4086	then
4087	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4088	cat ${localout[$i]} >> ${pathout[$i]}
4089	fi
4090
4091	# KOPIEREN AUF LOKALER MASCHINE
4092	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4093	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4094	then
4095
4096	# KOPIEREN AUF EINPROZESSORMASCHINE
4097	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4098	then
4099	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4100	if [[ $link_local_output = true ]]
4101	then
4102	printf " using ln -f\n"
4103	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4104	fi
4105	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4106	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4107	then
4108	if [[ $link_local_output = true ]]
4109	then
4110	printf " ln failed, using cp...\n"
4111	fi
4112	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4113	fi
4114	else
4115	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4116	if [[ $link_local_output = true ]]
4117	then
4118	printf " using ln -f\n"
4119	ln -f ${localout[$i]} ${pathout[$i]}
4120	fi
4121	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4122	if [[ ! -f "${pathout[$i]}" ]]
4123	then
4124	if [[ $link_local_output = true ]]
4125	then
4126	printf " ln failed, using cp...\n"
4127	fi
4128	cp ${localout[$i]} ${pathout[$i]}
4129	fi
4130	fi
4131
4132	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4133	then
4134
4135	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4136	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4137	# WIRD DANN KOPIERT
4138	# PER MOVE UMBENANNT WERDEN
4139	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4140	if [[ $link_local_output = true ]]
4141	then
4142	printf " using ln -f\n"
4143	mkdir ${pathout[$i]}
4144	cd ${localout[$i]}
4145	for file in $(ls *)
4146	do
4147	ln -f $file ${pathout[$i]}
4148	done
4149	cd $TEMPDIR
4150	fi
4151	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4152	if [[ ! -f "${pathout[$i]}/_0000" ]]
4153	then
4154	if [[ $link_local_output = true ]]
4155	then
4156	printf " ln failed for .../_0000, using cp...\n"
4157	fi
4158	cp -r ${localout[$i]} ${pathout[$i]}
4159	fi
4160
4161	fi
4162	fi
4163	done
4164	if (( i != 0 ))
4165	then
4166	if [[ $transfer_problems = true ]]
4167	then
4168	printf "\n$striche\n *** OUTPUT-files saved"
4169	printf "\n +++ WARNING: some data transfers failed! \n"
4170	else
4171	printf "\n$striche\n *** all OUTPUT-files saved \n"
4172	fi
4173	fi
4174
4175
4176	# EVENTUELL FOLGEJOB STARTEN
4177	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4178	if [[ -f CONTINUE_RUN ]]
4179	then
4180
4181	if [[ $archive_save = true ]]
4182	then
4183
4184	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4185	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4186	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4187	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4188	# HANDEN
4189	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4190	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4191	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4192	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4193	then
4194	mc=`echo $mc \| sed 's/#/f/g'`
4195	fi
4196
4197
4198	# JOB STARTEN
4199	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4200	echo " $mc"
4201	printf "\n$striche\n"
4202	if [[ $localhost != $fromhost ]]
4203	then
4204
4205	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4206	then
4207	echo "*** ssh will be used to initiate restart-runs!"
4208	echo " return_addres=\"$return_addres\" "
4209	echo " return_username=\"$return_username\" "
4210	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4211	then
4212	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4213	else
4214	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4215	fi
4216	else
4217	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4218	locat=restart; exit
4219	fi
4220
4221	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4222	# DER AKTUELLE JOB ENDET
4223	if [[ $queue = special1q ]]
4224	then
4225	sleep 120
4226	else
4227	sleep 30
4228	fi
4229
4230	else
4231
4232	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4233	# RUFEN WERDEN, AUSSER AUF lcfimm
4234	cd $LOCAL_PWD
4235	if [[ $localhost = lcfimm ]]
4236	then
4237	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4238	else
4239	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4240	fi
4241	cd - > /dev/null
4242	fi
4243	printf "\n$striche\n *** restart-run initiated \n"
4244
4245
4246	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4247	# GEHOLT WORDEN SIND, LOESCHEN
4248	(( i = 0 ))
4249	while (( i < iin ))
4250	do
4251	(( i = i + 1 ))
4252	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4253	then
4254	rm -r $tmp_data_catalog/${frelin[$i]}
4255	fi
4256	done
4257
4258	else
4259
4260	printf "\n +++ no restart-run possible, since errors occured"
4261	printf "\n during the archive process"
4262	fi
4263
4264	fi
4265
4266
4267
4268	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4269	if [[ "$email_notification" != "none" ]]
4270	then
4271
4272	if [[ $localhost != $fromhost ]]
4273	then
4274	if [[ -f CONTINUE_RUN ]]
4275	then
4276	echo "PALM restart run necessary" > email_text
4277	echo "description header of actual run:" >> email_text
4278	cat CONTINUE_RUN >> email_text
4279	echo "mrun-command to restart:" >> email_text
4280	echo "$mc" >> email_text
4281	else
4282	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4283	fi
4284	mail $email_notification < email_text
4285	printf "\n *** email notification sent to \"$email_notification\" "
4286	fi
4287	fi
4288
4289
4290
4291	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4292	cd $HOME
4293	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4294
4295	else
4296
4297
4298	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4299	# CHENDE AKTIONEN DURCHGEFUEHRT
4300
4301	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4302	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4303	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4304	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4305	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4306	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4307	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4308	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4309	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4310	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4311	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4312	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4313	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4314	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4315	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4316	if [[ $use_openmp = true ]]
4317	then
4318	mrun_com=${mrun_com}" -O $threads_per_task"
4319	fi
4320	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4321	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4322	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4323	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4324	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4325	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4326	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4327	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4328	if [[ $do_remote = true ]]
4329	then
4330	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4331	fi
4332
4333
4334	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4335	jobfile=jobfile.$RANDOM
4336
4337
4338	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4339	echo "mkdir $TEMPDIR" >> $jobfile
4340	echo "cd $TEMPDIR" >> $jobfile
4341
4342
4343	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4344	if [[ $do_trace = true ]]
4345	then
4346	echo "set -x" >> $jobfile
4347	else
4348	echo "set +vx" >> $jobfile
4349	fi
4350
4351
4352	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4353	# DATEI FUER DEN JOB
4354	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4355	then
4356
4357	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4358	# KOPIEREN
4359	if [[ $restart_run != true ]]
4360	then
4361	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4362	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4363	fi
4364
4365	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4366	echo "set -x" >> $jobfile
4367	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4368	echo "export SOURCES_COMPLETE=true" >> $jobfile
4369
4370	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4371	# ARBEITSVERZEICHNIS VERSCHIEBEN
4372	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4373	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4374	echo "execute_mrun=true" >> $jobfile
4375	echo " " >> $jobfile
4376
4377	else
4378
4379	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4380	# SOWIE GEGEBENENFALLS DES MAKEFILES
4381	if [[ $do_compile = true ]]
4382	then
4383
4384	source_catalog=SOURCES_FOR_RUN_$fname
4385
4386	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4387	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4388	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4389	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4390	echo "export SOURCES_COMPLETE=true" >> $jobfile
4391	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4392
4393	for filename in $source_list
4394	do
4395	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4396	echo "cat > $filename << \"%END%\"" >> $jobfile
4397	cat $source_catalog/$filename >> $jobfile
4398	echo " " >> $jobfile
4399	echo "%END%" >> $jobfile
4400	echo " " >> $jobfile
4401	done
4402
4403	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4404	echo "cat > Makefile << \"%END%\"" >> $jobfile
4405	cat $source_catalog/Makefile >> $jobfile
4406	echo " " >> $jobfile
4407	echo "%END%" >> $jobfile
4408	echo " " >> $jobfile
4409
4410	echo "cd - > /dev/null" >> $jobfile
4411
4412	fi
4413
4414
4415	# ABSPEICHERN DER KONFIGURATIONSDATEI
4416	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4417	echo "cat > $config_file << \"%END%\"" >> $jobfile
4418	cat $config_file >> $jobfile
4419	echo "%END%" >> $jobfile
4420	echo " " >> $jobfile
4421
4422
4423	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4424	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4425	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4426	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4427	echo "%END%" >> $jobfile
4428	echo "chmod u+x $mrun_script_name" >> $jobfile
4429	echo "execute_mrun=true" >> $jobfile
4430	echo " " >> $jobfile
4431
4432	fi
4433
4434
4435	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4436	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4437	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4438	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4439	if [[ $do_remote = true ]]
4440	then
4441	(( i = 0 ))
4442	while (( i < iin ))
4443	do
4444	(( i = i + 1 ))
4445	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4446	if [[ "${transin[$i]}" = job ]]
4447	then
4448	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4449	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4450	echo " " >> $jobfile
4451	echo "%END%" >> $jobfile
4452	else
4453	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4454	fi
4455
4456	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4457	echo "if [[ \$? = 1 ]]" >> $jobfile
4458	echo "then" >> $jobfile
4459	echo " echo \" \" " >> $jobfile
4460	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4461	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4462	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4463	echo " execute_mrun=false" >> $jobfile
4464	echo "fi" >> $jobfile
4465	done
4466	fi
4467
4468	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4469	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4470	echo "LOCAL_PWD=$working_directory" >> $jobfile
4471	echo "export LOCAL_PWD" >> $jobfile
4472
4473	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4474	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4475	echo "export LOCAL_MRUN_PATH" >> $jobfile
4476
4477	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4478	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4479	then
4480	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4481	fi
4482
4483	# MRUN AUF ZIELRECHNER AUFRUFEN
4484	echo "set -x" >> $jobfile
4485	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4486
4487	echo 'ls -al; echo `pwd`' >> $jobfile
4488	echo "cd \$HOME" >> $jobfile
4489	echo "rm -rf $TEMPDIR" >> $jobfile
4490
4491
4492
4493
4494	# JOB PER SUBJOB STARTEN
4495	if [[ $silent = false ]]
4496	then
4497	printf "\n "
4498	else
4499	printf "\n\n"
4500	fi
4501
4502	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4503	rm -rf $jobfile
4504
4505
4506	fi # ENDE REMOTE-TEIL
4507
4508
4509
4510	# ENDE DER PROZEDUR

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