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source: palm/trunk/SCRIPTS/mrun @ 635

Last change on this file since 635 was 635, checked in by raasch, 13 years ago
mrun/mbuild/subjob adjustments for new Tsubama system at Tokyo Institute of Techology (lctit)
Property svn:keywords set to `Id Rev`
File size: 171.3 KB

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1	#!/bin/ksh
2	# mrun - script for running PALM jobs
3	# $Id: mrun 635 2010-12-14 13:33:02Z raasch $
4
5	# Procedure for interactive/batch PALM runs (initial runs and automatic
6	# restart runs)
7
8	# Last changes:
9	# 03/03/94 - Siggi - Entwicklungsbeginn
10	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
11	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
12	# zelne Variable exportiert. Dies ist noetig, weil an-
13	# sonsten irgendein Speicher ueberlaeuft und von mrun
14	# aufgerufene Programme (z.B. stageout) mit Fehlern
15	# abbrechen (too many arguments)
16	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
17	# defaultmaessig im RRZN-Profile eingeschaltet
18	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
19	# wegfallen
20	# 25/04/00 - Siggi - Version 1.5
21	# remote_addres und remote_user in return_addres bzw.
22	# return_username umbenannt, return_username wird dem
23	# mrun-Aufruf im Job ueber Option -U mitgegeben.
24	# Neue Variable remote_username, die beim interaktiven
25	# mrun-Aufruf zwingend ueber die neue Option -u oder
26	# in der Konfigurationsdatei angegeben werden muss.
27	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
28	# Version 1.7
29	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
30	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
31	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
32	# zu bestimmen; Praeprozessoroptionen haben nun alle
33	# die Form -Dtext=text, weil auf IBM sonst text durch
34	# die leere Zeichenkette ersetzt wird
35	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
36	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
37	# (-D$OMP=OMP) in order to avoid problems with
38	# OMP_NUM_THREADS
39	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
40	# tar files, one for each node used
41	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
42	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
43	# 17/01/05 - Siggi - job for data transfer to local machine now within
44	# job class c1 (HLRN)
45	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
46	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
47	# base filename and cycle number
48	# 16/02/05 - Gerald - hababai validated
49	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
50	# 29/03/05 - Marcus - berni*-en0 validated
51	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
52	# 24/04/05 - Siggi - netcdf support on lcmuk
53	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
54	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
55	# number) can now be used within interactive runs
56	# 12/05/05 - Siggi - netcdf support on ibm
57	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
58	# 18/05/05 - Siggi - netcdf support on nec
59	# 24/05/05 - Siggi - netcdf support on ibms
60	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
61	# to 30 seconds
62	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
63	# PATH is temporarily set)
64	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
65	# caused warnings in the job protocol
66	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
67	# 25/10/05 - Siggi - error in listing files for getting the cycle number
68	# removed
69	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
70	# realized by file attribute trpe
71	# 28/10/05 - Siggi - if existing, the file extension is output in case
72	# of missing input file - no job abort in case of
73	# missing input files with file extensions
74	# (preliminary solution)
75	# 31/10/05 - Siggi - data transfer from nech now within seperate job
76	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
77	# 07/12/05 - Siggi - gallego and elephanta admitted
78	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
79	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
80	# 20/01/06 - Siggi - cpp directive for ibmy
81	# 09/02/06 - Siggi - ibmy admitted for batch mode
82	# 13/04/06 - Siggi - ostria admitted
83	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
84	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
85	# optimization of OpenMP runs (option stacksize is
86	# necessary for large gridpoint numbers because
87	# otherwise a segmentation fault occurs)
88	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
89	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
90	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
91	# 20/09/06 - Marcus - add DVRP library on nech
92	# 24/10/06 - Siggi - Environment variables for PALM steering are written
93	# on local NAMELIST file ENVPAR
94	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
95	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
96	# 06/02/07 - Siggi - add DVRP library on lcmuk
97	# 07/02/07 - Siggi - revision of source code handling, source code is
98	# now expected in directory given by source_path and
99	# not in the current working directory, source code
100	# files provided in add_source_path are allways
101	# compiled, source code to be compiled is allways
102	# sampled in SOURCES_FOR_RUN_$fname which is a
103	# subdirectory of the current working directory,
104	# -s TEST changed to -s WRITE_PERMIT or -s WP,
105	# adapted for RIAM (neck)
106	# bugfix for cycle number of output file (extout)
107	# all hpmuk-related code removed
108	# 14/02/07 - Siggi - dvrp support for neck added
109	# 28/02/07 - Siggi - empty lines in configuration file are accepted
110	# mrun_path replaced by PALM_BIN,
111	# all machines are calling interpret_config.x
112	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
113	# output
114	# 16/03/07 - Siggi - adjustments for lctit
115	# 29/03/07 - Siggi - global revision transfered to batch job by new
116	# option -G
117	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
118	# + netcdf/dvrp-options are read from configuration
119	# file, host identifier (local_host) is read from
120	# config file, code related to ftp filetransfer
121	# removed (incl. option -f)
122	# 19/06/07 - Siggi - time limit for cdata jobs increased
123	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
124	# if new option -Y (coupling) is given,
125	# output of executables to aout_output removed,
126	# messages are immediately written to stdout instead
127	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
128	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
129	# variables out to the nodes in coupled mode -disabled-
130	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
131	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
132	# environment variables out to the nodes in coupled mode
133	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
134	# suggestions
135	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
136	# argument -g group_number, admit all sla* node_usage
137	# queues
138	# 30/10/07 - Marcus - further adjustments for queues on lctit
139	# 14/02/08 - Bjoern - link of restart files with long file name possible
140	# 28/02/08 - Marcus - If environment variable link_local_output is set to
141	# true, mrun tries "ln -f" on local output and resorts
142	# to "cp" or "cp -r" on error
143	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
144	# which allows the user to choose his own job catalog
145	# by setting job_catalog in the configuration file
146	# (default is ~/job_queue),
147	# workaround for mpiexec with -env option,
148	# adjustments for lcxt4 (Bergen Center for Computational
149	# Science)
150	# 22/05/08 - Marcus - If environment variable link_local_input is set to
151	# true, mrun tries "ln -f" on local input and resorts
152	# to "cp" or "cp -r" on error
153	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
154	# 14/07/08 - Siggi - adjustments for lcsgih
155	# 08/08/08 - Marcus - typo removed in lcxt4 branch
156	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
157	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
158	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
159	# argument
160	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
161	# file
162	# 11/11/08 - Siggi - rules for using user code files changed: user
163	# code splitted into one file per subroutine,
164	# user can provide his/her own makefile, only
165	# default source-code filenames are allowed
166	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
167	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
168	# with environment variable mpilib
169	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
170	# using environment variable totalview
171	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
172	# interactive runs
173	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
174	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
175	# dvr streaming server is automatically started using
176	# new variable dvr_server and a configuration file
177	# .dvrserver.config,
178	# processing of dvr output files using new script
179	# process_dvr_output implemented, in order to make
180	# dvr application more user friendly
181	# 20/03/09 - Marcus - update of n1ge command for lctit
182	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
183	# to be followed by a coupled atmosphere-ocean run
184	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
185	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
186	# 08/07/09 - Siggi - default value for email_notification is none,
187	# option -e added to subjob
188	# 19/08/09 - Marcus - MPI debug option
189	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
190	# 25/08/09 - BjornM - adpated for lck
191	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
192	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
193	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
194	# switches on archiving, archiving on SGI-ICE enabled
195	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
196	# adjustment for special1q
197	# 18/12/09 - Carolin- modification of archiving (permq)
198	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
199	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
200	# implemented
201	# 08/02/10 - Siggi - loading of modules now controlled via configuration
202	# file (modules)
203	# 02/03/10 - Siggi - for each block in the configuration file, separate
204	# utility programs are used, combine_plot_fields is
205	# directly called and must not be given by an output
206	# command in the configuration file any more
207	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
208	# lcsgih/lcsgib is done using the names
209	# hicegate0/bicegate0 instead of the IP addresses
210	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
211	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
212	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
213	# has now argument threads_per_task
214	# adjustments for Kyushu Univ. (lcrte, ibmku)
215	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
216	# institute of technology (lctit)
217
218
219
220	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
221
222	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
223	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
224	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
225
226	AddFilenames=""
227	additional_conditions=""
228	add_source_path=""
229	afname=""
230	archive_save=true
231	archive_system=none
232	compiler_name=""
233	cond1=""
234	cond2=""
235	config_file=.mrun.config
236	coupled_dist=""
237	coupled_mode="mpi1"
238	cpp_opts=""
239	cpp_options=""
240	cpumax=0
241	cpurest=0
242	delete_temporary_catalog=true
243	do_batch=false
244	do_compile=true
245	do_remote=false
246	do_stagein=true
247	do_stageout=true
248	do_trace=false
249	email_notification="none"
250	exclude=""
251	executable=""
252	execution_error=false
253	fimm=false
254	fname=test
255	fromhost=""
256	global_revision=""
257	group_number=none
258	host=""
259	host_file=""
260	hp=""
261	ignore_archive_error=false
262	input_list=""
263	interpreted_config_file=""
264	job_catalog="~/job_queue"
265	job_on_file=""
266	keep_data_from_previous_run=false
267	link_local_input=false
268	link_local_output=false
269	localhost_realname=$(hostname)
270	local_compile=false
271	local_dvrserver_running=.FALSE.
272	locat=normal
273	mainprog=""
274	makefile=""
275	mc=$0
276	while [[ $(echo $mc \| grep -c "/") != 0 ]]
277	do
278	mc=`echo $mc \| cut -f2- -d"/"`
279	done
280	module_calls=""
281	mrun_script_name=$mc
282	netcdf_inc=""
283	netcdf_lib=""
284	netcdf_support=false
285	node_usage=default
286	numprocs=""
287	numprocs_atmos=0
288	numprocs_ocean=0
289	OOPT=""
290	openmp=false
291	output_list=""
292	package_list=""
293	punkte="..........................................................."
294	queue=none
295	read_from_config=""
296	restart_run=false
297	if [[ `hostname` = rte10 ]]
298	then
299	return_addres=133.5.185.60
300	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
301	else
302	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
303	fi
304	return_password=""
305	return_username=$LOGNAME
306	remotecall=false
307	remote_username=""
308	run_coupled_model=false
309	run_mode=""
310	scirocco=false
311	store_on_archive_system=false
312	striche=" ----------------------------------------------------------------------------"
313	silent=false
314	source_list=""
315	source_path=SOURCE
316	tasks_per_node=""
317	threads_per_task=1
318	tmpcreate=false
319	tmp_data_catalog=""
320	transfer_problems=false
321	usern=$LOGNAME
322	use_openmp=false
323	working_directory=`pwd`
324	TOPT=""
325	XOPT=""
326	zeit=$( date \| cut -c 12-19 )
327
328	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
329	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
330
331	typeset -R30 calltime
332	typeset -L20 spalte1
333	typeset -L40 spalte2
334	typeset -L60 spalte3
335	typeset -L35 string1=`date`
336	typeset -L12 string2=$usern
337	typeset -L12 string3=$localhost_realname
338	typeset -L12 string4
339	typeset -L12 string5
340	typeset -L30 version="MRUN 2.0 Rev$Rev: 635 $"
341
342
343
344	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
345	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
346
347	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
348	# EXPORTIERT WERDEN
349	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
350	export group_number input_list memory numprocs output_list queue run_mode
351
352
353
354	# FEHLERBEHANDLUNG
355	# BEI EXIT:
356	trap 'rm -rf $working_directory/tmp_mrun
357	if [[ $locat != localhost ]]
358	then
359	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
360	# then
361	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
362	#MRUN-calls on $localhost
363	#
364	#date and time user localhost remotehost termination mrun-command
365	#--------------------------------------------------------------------------------------------------------------------
366	#%STATEND%
367	# chmod 666 ${mrun_path}/statistik/mrun_statistik
368	# fi
369	#
370	# # EINTRAG IN DIE STATISTIK-DATEI
371	# string4=$host
372	# string5=$locat
373	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
374	# then
375	# if [[ $do_batch = true ]]
376	# then
377	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
378	# else
379	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
380	# fi
381	# fi
382	echo " " > /dev/null
383	fi
384
385	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
386	then
387
388	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
389	(( i = 0 ))
390	while (( i < iec ))
391	do
392	(( i = i + 1 ))
393	printf "\n *** Execution of ERROR-command:\n"
394	printf " >>> ${err_command[$i]}\n"
395	eval ${err_command[$i]}
396	done
397	if [[ -n $interpreted_config_file ]] then
398	rm -rf $interpreted_config_file
399	fi
400	if [[ -n .mrun_environment ]] then
401	rm -rf .mrun_environment
402	fi
403	if [[ $tmpcreate = true ]]
404	then
405	printf "\n *** Contents of \"$TEMPDIR\":\n"
406	ls -al; cd
407	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
408	fi
409	if [[ "$dvrserver_id" != "" ]]
410	then
411	echo "+++ killing dvrserver_id=$dvrserver_id"
412	kill $dvrserver_id
413	fi
414	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
415	then
416	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
417	fi
418	printf "\n\n+++ MRUN killed \n\n"
419	elif [[ $locat != control_c ]]
420	then
421	printf "\n\n --> all actions finished\n\n"
422	printf " Bye, bye $usern !!\n\n"
423	fi' exit
424
425
426	# BEI TERMINAL-BREAK:
427	trap 'rm -rf $working_directory/tmp_mrun
428	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
429	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
430	then
431	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
432	fi
433	if [[ "$dvrserver_id" != "" ]]
434	then
435	echo "+++ killing dvrserver_id=$dvrserver_id"
436	kill $dvrserver_id
437	fi
438	printf "\n+++ MRUN killed by \"^C\" \n\n"
439	locat=control_c
440	exit
441	' 2
442
443
444	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
445	# BEEN SET
446	if [[ "$PALM_BIN" = "" ]]
447	then
448	printf "\n +++ environment variable PALM_BIN has not been set"
449	printf "\n please set it to the directory where the PALM scripts are located"
450	locat=palm_bin; exit
451	fi
452	export PATH=$PALM_BIN:$PATH
453
454
455
456	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
457	# FUER FOLGEJOBS BENOETIGT WIRD
458	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vxX:yY: option
459	do
460	case $option in
461	(a) afname=$OPTARG;;
462	(A) store_on_archive_system=true; mc="$mc -A";;
463	(b) do_batch=true; mc="$mc -b";;
464	(B) delete_temporary_catalog=false; mc="$mc -B";;
465	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
466	(C) restart_run=true; mc="$mc -C";;
467	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
468	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
469	(F) job_on_file="-D"; mc="$mc -F";;
470	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
471	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
472	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
473	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
474	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
475	(I) ignore_archive_error=true; mc="$mc -I";;
476	(k) keep_data_from_previous_run=true; mc="$mc -k";;
477	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
478	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
479	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
480	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
481	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
482	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
483	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
484	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
485	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
486	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
487	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
488	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
489	(S) read_from_config=false; mc="$mc -S";;
490	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
491	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
492	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
493	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
494	(v) silent=true; mc="$mc -v";;
495	(x) do_trace=true;set -x; mc="$mc -x";;
496	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
497	(y) ocean_file_appendix=true; mc="$mc -y";;
498	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
499	(\?) printf "\n +++ unknown option $OPTARG \n"
500	printf "\n --> type \"$0 ?\" for available options \n"
501	locat=parameter;exit;;
502	esac
503	done
504
505
506	# EVTL. POSITIONSPARAMETER EINLESEN
507	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
508	shift OPTIND-1
509
510
511	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
512	if [[ "$1" = "?" ]]
513	then
514	(printf "\n *** mrun can be called as follows:\n"
515	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
516	printf "\n Description of available options:\n"
517	printf "\n Option Description Default-Value"
518	printf "\n -a base name of input files equiv. -d"
519	printf "\n -A archiving when using file-attribute fl"
520	printf "\n -b batch-job on local machine ---"
521	printf "\n -B do not delete temporary directory at end ---"
522	printf "\n -c configuration file .mrun.config"
523	printf "\n -d base name of files attached to program test"
524	printf "\n -D preprocessor(cpp)-directives \"\" "
525	printf "\n -F create remote job file only ---"
526	printf "\n -h execution host $localhost_realname"
527	printf "\n -i INPUT control list \"\" "
528	printf "\n -I archiving errors of previous batch-jobs"
529	printf "\n will be ignored"
530	printf "\n -k keep data from previous run"
531	printf "\n -K additional conditions for controling"
532	printf "\n usage of conditional code and"
533	printf "\n env-variables in configuration file \"\" "
534	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
535	printf "\n -M Makefile name Makefile"
536	printf "\n -n node usage (shared/not_shared) depending on -h"
537	printf "\n -o OUTPUT control list \"\" "
538	printf "\n -O use OpenMP ---"
539	printf "\n -p software package list \"\" "
540	printf "\n -q queue \"$queue\" "
541	printf "\n -r run control list (combines -i -o) \"\" "
542	printf "\n -s filenames of routines to be compiled \"\" "
543	printf "\n must end with .f, .f90, .F, or .c !"
544	printf "\n use \"..\" for more than one file and wildcards"
545	printf "\n -s TEST compiles all files with w-permit"
546	printf "\n -S config file interpreted by shellscript ---"
547	printf "\n -t allowed cpu-time in seconds (batch) 0"
548	printf "\n -T tasks per node depending on -h"
549	printf "\n -u username on remote machine \"\" "
550	printf "\n -v no prompt for confirmation ---"
551	printf "\n -x tracing of mrun for debug purposes ---"
552	printf "\n -X # of processors (on parallel machines) 1"
553	printf "\n -y add appendix \"_O\" to all local output"
554	printf "\n files (ocean precursor runs followed by"
555	printf "\n coupled atmosphere-ocean runs) ---"
556	printf "\n -Y run coupled model, \"#1 #2\" with"
557	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
558	printf "\n "
559	printf "\n Possible values of positional parameter <modus>:"
560	printf "\n \"?\" - this outline \n\n") \| more
561	exit
562	elif [[ "$1" != "" ]]
563	then
564	printf "\n +++ positional parameter $1 unknown \n"
565	locat=parameter; exit
566	fi
567
568
569
570	# KURZE STARTMELDUNG
571	printf "\n*** $version "
572	printf "\n will be executed. Please wait ..."
573
574
575
576	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
577	if [[ ! -f $config_file ]]
578	then
579	printf "\n\n +++ configuration file: "
580	printf "\n $config_file"
581	printf "\n does not exist"
582	locat=connect; exit
583	fi
584
585
586	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
587	line=""
588	grep "%host_identifier" $config_file > tmp_mrun
589	while read line
590	do
591	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
592	then
593	HOSTNAME=`echo $line \| cut -d" " -s -f2`
594	host_identifier=`echo $line \| cut -d" " -s -f3`
595	if [[ $localhost_realname = $HOSTNAME ]]
596	then
597	localhost=$host_identifier
598	break
599	fi
600	fi
601	done < tmp_mrun
602
603	if [[ "$localhost" = "" ]]
604	then
605	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
606	printf "\n for local host \"$localhost_realname\"."
607	printf "\n Please add line"
608	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
609	printf "\n to the configuration file."
610	locat=localhost; exit
611	fi
612
613
614	# HOSTSPEZIFISCHE VARIABLEN SETZEN
615	case $localhost_realname in
616	(r1\|r2\|h01\|b01) archive_system=tivoli;;
617	(cs*) archive_system=ut;;
618	(fimm.bccs.uib.no) fimm=true;;
619	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
620	(scirocco) scirocco=true;;
621	esac
622
623
624
625	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
626	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
627	[[ "$afname" = "" ]] && afname=$fname
628
629
630	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
631	if [[ "$run_mode" != "" ]]
632	then
633	input_list="$input_list $run_mode"
634	output_list="$output_list $run_mode"
635	fi
636
637
638	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
639	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
640	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
641	# STARTET)
642	if [[ "$fromhost" = "" ]]
643	then
644	fromhost=$localhost
645	fi
646
647
648	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
649	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
650	then
651	source_list=TEST
652	local_compile=true
653	host=$localhost
654	fi
655
656
657	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
658	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
659	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
660	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
661	if [[ -n $host && "$host" != $localhost ]]
662	then
663	do_batch=true
664	do_remote=true
665	case $host in
666	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxt4\|lcxt5m\|lck) true;;
667	(*) printf "\n"
668	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
669	printf "\n is not available"
670	locat=nqs; (( iec = 0 )); exit;;
671	esac
672	else
673	host=$localhost
674	fi
675
676
677	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
678	if [[ -n $additional_conditions ]]
679	then
680	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
681	cond1=`echo $additional_conditions \| cut -d" " -f1`
682	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
683	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
684	if [[ -n $dummy ]]
685	then
686	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
687	locat=options; exit
688	fi
689	block=_$cond1
690	[[ -n $cond2 ]] && block=${block}_$cond2
691	fi
692
693
694	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
695	if [[ $run_coupled_model = true ]]
696	then
697
698	if [[ -n $coupled_dist ]]
699	then
700
701	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
702	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
703
704	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
705	then
706
707	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
708	printf "\n PEs (total) : $numprocs"
709	printf "\n PEs (atmosphere): $numprocs_atmos"
710	printf "\n PEs (ocean) : $numprocs_ocean"
711	locat=coupling; exit
712
713	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
714	# THIS SHOULD BE REMOVED IN FUTURE
715	elif (( $numprocs_ocean != $numprocs_atmos ))
716	then
717
718	printf "\n +++ currently only 1:1 topologies are supported"
719	printf "\n PEs (total) : $numprocs"
720	printf "\n PEs (atmosphere): $numprocs_atmos"
721	printf "\n PEs (ocean) : $numprocs_ocean"
722	(( numprocs_atmos = $numprocs / 2 ))
723	(( numprocs_ocean = $numprocs / 2 ))
724	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
725
726	fi
727
728	else
729
730	(( numprocs_ocean = $numprocs / 2 ))
731	(( numprocs_atmos = $numprocs / 2 ))
732
733	fi
734	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
735
736	# GET coupled_mode FROM THE CONFIG FILE
737	line=""
738	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
739	while read line
740	do
741	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
742	then
743	coupled_mode="mpi2"
744	fi
745	done < tmp_mrun
746
747	fi
748
749
750	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
751	# ARCHIVIERUNG FEHLGESCHLAGEN IST
752	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
753	then
754	if [[ $ignore_archive_error = false ]]
755	then
756	printf "\n +++ data archiving of previous run failed"
757	printf "\n see directory \~/job_queue on remote machine"
758	locat=archive; exit
759	else
760	printf "\n +++ warning: data archiving in a previous run failed"
761	printf "\n MRUN continues, trying to get backup copy"
762	fi
763	fi
764
765
766
767	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
768	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
769	if [[ "$read_from_config" = false ]]
770	then
771
772	[[ $silent = false ]] && printf "\n Reading the configuration file... "
773	while read zeile
774	do
775	[[ $silent = false ]] && printf "."
776
777
778	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
779	# ERSETZEN
780	eval zeile=\"$zeile\"
781
782
783	# INTERPRETATION DER ZEILE
784	if [[ "$(echo $zeile)" = "" ]]
785	then
786	# LEERZEILE, KEINE AKTION
787	continue
788
789	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
790	then
791
792	# ZEILE IST KOMMENTARZEILE
793	true
794
795	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
796	then
797
798	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
799	zeile=$(echo $zeile \| cut -c2-)
800	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
801	var=`echo $zeile \| cut -d" " -f1`
802	value=`echo $zeile \| cut -d" " -s -f2`
803	for_host=`echo $zeile \| cut -d" " -s -f3`
804	for_cond1=`echo $zeile \| cut -d" " -s -f4`
805	for_cond2=`echo $zeile \| cut -d" " -s -f5`
806
807	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
808	then
809
810	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
811	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
812	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
813
814
815	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
816	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
817	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
818	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
819	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
820	# KONFIGURATIONSDATEI
821	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
822	then
823	eval $var=\$value
824
825	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
826	if [[ $do_trace = true ]]
827	then
828	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
829	fi
830	fi
831
832	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
833	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
834	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
835	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
836	if [[ $var = host ]]
837	then
838	if [[ -n $host && "$host" != $localhost ]]
839	then
840	do_batch=true
841	do_remote=true
842	case $host in
843	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
844	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
845	printf "\n is not available"
846	locat=nqs; exit;;
847	esac
848	else
849	host=$localhost
850	fi
851	fi
852
853	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
854	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
855	# DEN PROGRAMMEN BENOETIGT WERDEN
856	export $var
857	fi
858
859
860
861
862	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
863	then
864
865	# ZEILE DEFINIERT ERROR-KOMMANDO
866	(( iec = iec + 1 ))
867	zeile=$(echo $zeile \| cut -c4-)
868	err_command[$iec]="$zeile"
869
870	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
871	then
872
873	# ZEILE DEFINIERT INPUT-KOMMANDO
874	(( iic = iic + 1 ))
875	zeile=$(echo $zeile \| cut -c4-)
876	in_command[$iic]="$zeile"
877
878	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
879	then
880
881	# ZEILE DEFINIERT OUTPUT-KOMMANDO
882	(( ioc = ioc + 1 ))
883	zeile=$(echo $zeile \| cut -c4-)
884	out_command[$ioc]="$zeile"
885
886	else
887
888	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
889	# s2a: in/out - Feld
890	# s2b: loc - Feld (optional)
891	# s2c: tr/ar - Feld (optional)
892	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
893	s1=`echo $zeile \| cut -d" " -f1`
894	s2=`echo $zeile \| cut -d" " -s -f2`
895	s2a=$(echo $s2 \| cut -d":" -f1)
896	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
897	then
898	s2b=""
899	s2c=""
900	else
901	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
902	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
903	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
904	fi
905	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
906	s3=`echo $zeile \| cut -d" " -f3`
907	s4=`echo $zeile \| cut -d" " -s -f4`
908	s5=`echo $zeile \| cut -d" " -s -f5`
909	s6=`echo $zeile \| cut -d" " -s -f6`
910
911
912	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
913	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
914	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
915	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
916	# HANDEN SEIN MUSS (D.H. s2b = loc)
917	IFSALT="$IFS"; IFS="$IFS:"
918	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
919	then
920	found=false
921	for actual in $input_list
922	do
923	for formal in $s3
924	do
925	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
926	done
927	done
928	if [[ $found = true ]]
929	then
930	(( iin = iin + 1 ))
931	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
932	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
933	extin[$iin]=$s6
934	fi
935	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
936	then
937	found=false
938	for actual in $output_list
939	do
940	for formal in $s3
941	do
942	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
943	done
944	done
945	if [[ $found = true ]]
946	then
947	(( iout = iout + 1 ))
948	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
949	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
950	fi
951	elif [[ "$s2a" != in && "$s2a" != out ]]
952	then
953	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
954	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
955	locat=connect; exit
956	fi
957	IFS="$IFSALT"
958	fi
959	done < $config_file
960
961	else
962
963
964	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
965	[[ $silent = false ]] && printf "..."
966	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
967	export interpreted_config_file=.icf.$RANDOM
968
969
970
971	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
972	# VERFUEGUNG STELLEN
973	cat > .mrun_environment << %%END%%
974	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
975	config_file = '$config_file', do_remote = '$do_remote',
976	do_trace = '$do_trace', host = '$host',
977	input_list = '$input_list', icf = '$interpreted_config_file',
978	localhost = '$localhost', output_list = '$output_list' /
979
980	%%END%%
981
982	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
983	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
984	mrun_memory=$memory
985	mrun_group_number=$group_number
986	mrun_cpumax=$cpumax
987	mrun_numprocs=$numprocs
988
989	if [[ $localhost_realname = "sx-fep" ]]
990	then
991	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
992	else
993
994	if [[ "$host" != $localhost ]]
995	then
996
997	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
998	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
999	if [[ $? != 0 ]]
1000	then
1001	printf "\n\n +++ no interpret_config found"
1002	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1003	locat=interpret_config; exit
1004	fi
1005	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1006	$interpret_config_executable
1007
1008	else
1009
1010	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1011	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1012	then
1013	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1014	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1015	locat=interpret_config; exit
1016	else
1017	interpret_config${block}.x
1018	fi
1019
1020	fi
1021	fi
1022	rm .mrun_environment
1023
1024
1025	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1026	chmod u+x $interpreted_config_file
1027	export PATH=$PATH:.
1028	. $interpreted_config_file
1029	rm $interpreted_config_file
1030
1031
1032	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1033	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1034	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1035	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1036	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1037
1038	fi
1039
1040
1041	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1042	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1043	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1044	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1045	if [[ "$SOURCES_COMPLETE" = "" ]]
1046	then
1047
1048	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1049	# VEREINBART WURDE
1050	source_path=""
1051	line=""
1052	grep "%source_path" $config_file > tmp_mrun
1053	while read line
1054	do
1055	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1056	then
1057	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1058	then
1059	global_source_path=`echo $line \| cut -d" " -f2`
1060	fi
1061	fi
1062	done < tmp_mrun
1063
1064	line=""
1065	found=false
1066	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1067	while read line
1068	do
1069	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1070	then
1071	if [[ $found = true ]]
1072	then
1073	printf "\n\n +++ more than one source path found in configuration file"
1074	printf "\n for local host \"$localhost\" "
1075	locat=source_path; exit
1076	fi
1077	source_path=`echo $line \| cut -d" " -f2`
1078	found=true
1079	fi
1080	done < tmp_mrun
1081	rm tmp_mrun
1082
1083	if [[ "$source_path" = "" ]]
1084	then
1085	if [[ "$global_source_path" != "" ]]
1086	then
1087	source_path=$global_source_path
1088	else
1089	printf "\n\n +++ no source path found in configuration file"
1090	printf "\n for local host \"$localhost\" "
1091	locat=source_path; exit
1092	fi
1093	fi
1094	eval source_path=$source_path
1095
1096	if [[ ! -d $source_path ]]
1097	then
1098	printf "\n\n +++ source path \"$source_path\" on local host"
1099	printf "\n \"$localhost\" does not exist"
1100	locat=source_path; exit
1101	fi
1102
1103	fi
1104
1105
1106	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1107	# DURCH OPTION -G MITGETEILT)
1108	if [[ "$global_revision" = "" ]]
1109	then
1110	global_revision=`svnversion $source_path 2>/dev/null`
1111	global_revision="Rev: $global_revision"
1112	fi
1113
1114
1115	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1116	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1117	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1118	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1119	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1120	if [[ -n $host && "$host" != $localhost ]]
1121	then
1122	do_batch=true
1123	do_remote=true
1124	case $host in
1125	(ibm\|ibmh\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1126	(*) printf "\n"
1127	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1128	printf "\n is not available"
1129	locat=nqs; (( iec = 0 )); exit;;
1130	esac
1131	else
1132	host=$localhost
1133	fi
1134
1135
1136	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1137	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1138	then
1139
1140	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1141	if [[ ! -n $numprocs ]]
1142	then
1143	printf "\n"
1144	printf "\n +++ option \"-K parallel\" requires additional specification"
1145	printf "\n of the number of processors to be used by"
1146	printf "\n mrun-option \"-X\" or by environment-variable"
1147	printf "\n \"numprocs\" in the configuration file"
1148	locat=numprocs; (( iec = 0 )); exit
1149	fi
1150
1151	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1152	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1153	# GESAMTPROZESSORANZAHL IST
1154	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibms ]]
1155	then
1156	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1157	(( ival = $tasks_per_node ))
1158	(( pes = numprocs ))
1159	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1160	# then
1161	# (( pes = pes - 1 ))
1162	# fi
1163	(( ii = pes / ival ))
1164	if (( pes - ii * ival > 0 ))
1165	then
1166	printf "\n"
1167	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1168	printf "\n divisor of the total number of processors (option \"-X\")"
1169	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1170	locat=tasks_per_node; (( iec = 0 )); exit
1171	fi
1172	fi
1173
1174	# IBMY HAT NUR EINEN KNOTEN
1175	if [[ $host = ibmy ]]
1176	then
1177	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1178	then
1179	printf "\n"
1180	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1181	printf "\n total number of processors (option \"-X\")"
1182	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1183	locat=tasks_per_node; (( iec = 0 )); exit
1184	fi
1185	fi
1186
1187	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1188	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1189	# if [[ $use_openmp = true ]]
1190	# then
1191	# threads_per_task=$tasks_per_node
1192	# tasks_per_node=1
1193	# fi
1194
1195	# SETTINGS FOR SUBJOB-COMMAND
1196	TOPT="-T $tasks_per_node"
1197	OOPT="-O $threads_per_task"
1198
1199	# GESAMTZAHL DER KNOTEN BESTIMMEN
1200	if [[ "$tasks_per_node" != "" ]]
1201	then
1202	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1203	fi
1204
1205	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1206	# SETZEN
1207	if [[ $node_usage = default ]]
1208	then
1209	if [[ $host = ibms ]]
1210	then
1211	node_usage=shared
1212	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1213	then
1214	node_usage=singlejob
1215	else
1216	node_usage=not_shared
1217	fi
1218	fi
1219
1220	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1221	then
1222	printf "\n"
1223	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1224	printf "\n \"shared\" or \"not_shared\""
1225	locat=tasks_per_node; (( iec = 0 )); exit
1226	fi
1227
1228	fi
1229
1230	# PRUEFEN, OB HOSTFILE EXISTIERT
1231	if [[ -n $hostfile ]]
1232	then
1233	if [[ ! -f $hostfile ]]
1234	then
1235	printf "\n"
1236	printf "\n +++ hostfile \"$hostfile\" does not exist"
1237	locat=hostfile; exit
1238	fi
1239	fi
1240
1241	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1242	if [[ $host = ibmy && $do_remote = false ]]
1243	then
1244	if [[ ! -f $HOME/.rhosts ]]
1245	then
1246	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1247	printf "\n\n *** file:"
1248	printf "\n $HOME/.rhosts"
1249	printf "\n was created\n"
1250	fi
1251	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1252	then
1253	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1254	printf "\n\n *** file:"
1255	printf "\n $HOME/.rhosts"
1256	printf "\n was extended by the name of the current host\n"
1257	fi
1258	fi
1259
1260
1261
1262	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1263	if [[ $queue = none ]]
1264	then
1265	case $host in
1266	(ibmh) queue=no_class;;
1267	(ibmy) queue=parallel;;
1268	(lckyoto) queue=ph;;
1269	(lcsgib) queue=bigq;;
1270	(lcsgih) queue=bigq;;
1271	(lctit) queue=S;;
1272	(nech) queue=none;;
1273	(necriam) queue=SP;;
1274	(unics) queue=unics;;
1275	esac
1276	fi
1277
1278
1279	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1280	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1281	# ERMITTELN
1282	(( i = 0 ))
1283	while (( i < iin ))
1284	do
1285	(( i = i + 1 ))
1286	(( maxcycle = 0 ))
1287
1288	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1289	if [[ "${actionin[$i]}" = di ]]
1290	then
1291	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1292	# REM-MASCHINE AUSWERTEN
1293	eval filename=${pathin[$i]}/${endin[$i]}
1294	else
1295	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1296	# REM-MASCHINE AUSWERTEN
1297	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1298	fi
1299
1300	# PRUEFEN AUF VORHANDENSEIN
1301	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1302	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1303	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1304	then
1305	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1306	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1307	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1308	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1309	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1310	if [[ "${transin[$i]}" != "locopt" ]]
1311	then
1312	printf "\n\n +++ INPUT-file: "
1313	if [[ "${extin[$i]}" = "" ]]
1314	then
1315	printf "\n $filename"
1316	else
1317	printf "\n $filename.${extin[$i]}"
1318	fi
1319	printf "\n does not exist\n"
1320	locat=input; exit
1321	else
1322	transin[$i]="unavailable"
1323	fi
1324	else
1325
1326	# ZYKLUSNUMMER FESTSTELLEN
1327	ls -1 -d $filename > filelist 2>/dev/null
1328	ls -1 -d $filename.* >> filelist 2>/dev/null
1329	while read zeile
1330	do
1331	cycle=$(print $zeile \| cut -f2 -d".")
1332	if [[ "$cycle" = "$zeile" ]]
1333	then
1334	(( icycle = 0 ))
1335	elif [[ "$cycle" = "${extin[$i]}" ]]
1336	then
1337	(( icycle = 0 ))
1338	else
1339	(( icycle = $cycle ))
1340	fi
1341	if (( icycle > maxcycle ))
1342	then
1343	(( maxcycle = icycle ))
1344	file_to_be_used=$zeile
1345	fi
1346	done <filelist
1347	rm filelist
1348
1349	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1350	if (( maxcycle > 0 ))
1351	then
1352	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1353	then
1354	filename=${filename}.$maxcycle.${extin[$i]}
1355	else
1356	filename=${filename}.$maxcycle
1357	fi
1358	else
1359	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1360	then
1361	filename=${filename}.${extin[$i]}
1362	fi
1363	fi
1364
1365	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1366	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1367	absnamein[$i]=$filename
1368	if (( maxcycle > 0 ))
1369	then
1370	if [[ "${actionin[$i]}" = di ]]
1371	then
1372	frelin[$i]=${endin[$i]}.$maxcycle
1373	else
1374	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1375	fi
1376	else
1377	if [[ "${actionin[$i]}" = di ]]
1378	then
1379	frelin[$i]=${endin[$i]}
1380	else
1381	frelin[$i]=${afname}${endin[$i]}
1382	fi
1383	fi
1384
1385	fi
1386	done
1387
1388
1389	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1390	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1391	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1392	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1393	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1394	(( i = 0 ))
1395	while (( i < iout ))
1396	do
1397	(( i = i + 1 ))
1398	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1399	then
1400	if [[ "${actionout[$i]}" = tr ]]
1401	then
1402	actionout[$i]=""
1403	elif [[ "${actionout[$i]}" = trpe ]]
1404	then
1405	actionout[$i]=pe
1406	elif [[ "${actionout[$i]}" = tra ]]
1407	then
1408	actionout[$i]=a
1409	fi
1410	(( maxcycle = 0 ))
1411	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1412	eval catalogname=${pathout[$i]}
1413	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1414	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1415	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1416	then
1417
1418	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1419	if cat /dev/null > $filename
1420	then
1421	rm $filename
1422	else
1423
1424	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1425	if [[ ! -d $catalogname ]]
1426	then
1427	if mkdir -p $catalogname
1428	then
1429	printf "\n\n *** directory:"
1430	printf "\n $catalogname"
1431	printf "\n was created\n"
1432	else
1433	printf "\n\n +++ OUTPUT-file:"
1434	printf "\n $filename"
1435	printf "\n cannot be created, because directory does not exist"
1436	printf "\n and cannot be created either"
1437	printf "\n"
1438	locat=output ; exit
1439	fi 2>/dev/null
1440	else
1441	printf "\n\n +++ OUTPUT-file:"
1442	printf "\n $filename"
1443	printf "\n cannot be created, although directory exists"
1444	printf "\n"
1445	locat=output ; exit
1446	fi
1447	fi 2>/dev/null
1448	else
1449
1450	# ZYKLUSNUMMER FESTSTELLEN
1451	ls -1 -d $filename > filelist 2>/dev/null
1452	ls -1 -d $filename.* >> filelist 2>/dev/null
1453	while read zeile
1454	do
1455	cycle=$(print $zeile \| cut -f2 -d".")
1456	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1457	then
1458	(( icycle = 1 ))
1459	else
1460	(( icycle = $cycle + 1 ))
1461	fi
1462	if (( icycle > maxcycle ))
1463	then
1464	(( maxcycle = icycle ))
1465	fi
1466	done <filelist
1467	rm filelist
1468	fi
1469
1470	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1471	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1472	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1473	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1474	if [[ "${actionout[$i]}" != a ]]
1475	then
1476	if (( maxcycle > 0 ))
1477	then
1478	filename=${filename}.$maxcycle
1479	if cat /dev/null > $filename
1480	then
1481	rm $filename
1482	else
1483	printf "\n +++ OUTPUT-file:"
1484	printf "\n $filename"
1485	printf "\n cannot be created"
1486	locat=output ; exit
1487	fi
1488	fi
1489	else
1490	(( maxcycle = maxcycle - 1 ))
1491	if (( maxcycle > 0 ))
1492	then
1493	filename=${filename}.$maxcycle
1494	fi
1495	fi
1496
1497	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1498	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1499	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1500	pathout[$i]=$filename
1501	if (( maxcycle > 0 ))
1502	then
1503	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1504	else
1505	frelout[$i]=${fname}${endout[$i]}
1506	fi
1507
1508	fi
1509	done
1510
1511
1512	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1513	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1514	then
1515	if [[ "$dvr_inc" = "" ]]
1516	then
1517	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1518	printf "\n This is required for the dvrp_graphics package.\n"
1519	locat=dvr; exit
1520	fi
1521	if [[ "$dvr_lib" = "" ]]
1522	then
1523	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1524	printf "\n This is required for the dvrp_graphics package.\n"
1525	locat=dvr; exit
1526	fi
1527	fi
1528
1529
1530	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1531	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1532	# UEBERSETZT ZU WERDEN)
1533	if [[ "$mainprog" = "" && "$executable" = "" ]]
1534	then
1535	printf "\n +++ neither main program nor executable defined"
1536	locat=source; exit
1537	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1538	then
1539	printf "\n +++ main program as well as executable defined"
1540	locat=source; exit
1541	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1542	then
1543	do_compile=false
1544	fi
1545
1546
1547	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1548	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1549	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1550	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1551	then
1552	rm -rf SOURCES_FOR_RUN_$fname
1553	mkdir SOURCES_FOR_RUN_$fname
1554	fi
1555
1556
1557	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1558	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1559	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1560	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1561	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1562	then
1563
1564	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1565	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1566
1567
1568	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1569	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1570	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1571	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1572	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1573	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1574	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1575	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1576	# GESAMMELT
1577	if [[ "$source_list" = WRITE_PERMIT ]]
1578	then
1579
1580	source_list=""
1581	cd $source_path
1582
1583
1584	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1585	Names=$(ls -1 *.f90 2>&1)
1586	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1587	Names=$(ls -1 *.F90 2>&1)
1588	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1589	Names=$(ls -1 *.F 2>&1)
1590	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1591	Names=$(ls -1 *.f 2>&1)
1592	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1593	Names=$(ls -1 *.c 2>&1)
1594	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1595
1596
1597	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1598	for dateiname in $Filenames
1599	do
1600	if [[ -w $dateiname ]]
1601	then
1602	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1603	then
1604	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1605	source_list=$source_list"$dateiname "
1606	fi
1607	fi
1608	done
1609
1610	cd - > /dev/null
1611
1612
1613	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1614	then
1615
1616	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1617	source_list=""
1618	cd $source_path
1619
1620
1621	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1622	if [[ ! -d .svn ]]
1623	then
1624	printf "\n\n +++ source directory"
1625	printf "\n \"$source_path\" "
1626	printf "\n is not under control of \"subversion\"."
1627	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1628	fi
1629
1630
1631	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1632	Filenames=""
1633	svn status > tmp_mrun
1634	while read line
1635	do
1636	firstc=`echo $line \| cut -c1`
1637	if [[ $firstc = M \|\| $firstc = "?" ]]
1638	then
1639	Name=`echo "$line" \| cut -c8-`
1640	extension=`echo $Name \| cut -d. -f2`
1641	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1642	then
1643	Filenames="$Filenames "$Name
1644	fi
1645	fi
1646	done < tmp_mrun
1647
1648
1649	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1650	for dateiname in $Filenames
1651	do
1652	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1653	source_list=$source_list"$dateiname "
1654	done
1655
1656	cd - > /dev/null
1657
1658
1659	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1660	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1661	# VORHANDEN
1662	elif [[ "$source_list" != "" && $restart_run != true ]]
1663	then
1664
1665	cd $source_path
1666
1667	for filename in $source_list
1668	do
1669
1670	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1671	if [[ $(print $filename \| grep -c "/") != 0 ]]
1672	then
1673	printf "\n +++ source code file: $filename"
1674	printf "\n must not contain (\"/\") "
1675	locat=source; exit
1676	fi
1677
1678	if [[ ! -f $filename ]]
1679	then
1680	printf "\n +++ source code file: $filename"
1681	printf "\n does not exist"
1682	locat=source; exit
1683	else
1684	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1685	fi
1686
1687	done
1688
1689	cd - > /dev/null
1690
1691	fi
1692
1693
1694	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1695	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1696	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1697	if [[ $restart_run != true ]]
1698	then
1699
1700	if [[ ! -f "$source_path/$mainprog" ]]
1701	then
1702	printf "\n\n +++ main program: $mainprog"
1703	printf "\n does not exist in source directory"
1704	printf "\n \"$source_path\"\n"
1705	locat=source; exit
1706	else
1707	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1708	then
1709	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1710	source_list=${mainprog}" $source_list"
1711	fi
1712	fi
1713	fi
1714
1715
1716	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1717	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1718	if [[ "$restart_run" != true ]]
1719	then
1720	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1721	if [[ ! -f $makefile ]]
1722	then
1723	printf "\n +++ file \"$makefile\" does not exist"
1724	locat=make; exit
1725	else
1726	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1727	fi
1728	fi
1729
1730
1731	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1732	if [[ $restart_run != true && "$add_source_path" != "" ]]
1733	then
1734
1735	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1736	if [[ ! -d $add_source_path ]]
1737	then
1738	printf "\n\n +++ WARNING: additional source code directory"
1739	printf "\n \"$add_source_path\" "
1740	printf "\n does not exist or is not a directory."
1741	printf "\n No source code will be used from this directory!\n"
1742	add_source_path=""
1743	sleep 3
1744	else
1745
1746	cd $add_source_path
1747	found=false
1748
1749	Names=$(ls -1 *.f90 2>&1)
1750	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1751	Names=$(ls -1 *.F90 2>&1)
1752	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1753	Names=$(ls -1 *.F 2>&1)
1754	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1755	Names=$(ls -1 *.f 2>&1)
1756	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1757	Names=$(ls -1 *.c 2>&1)
1758	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1759
1760	cd - > /dev/null
1761	cd SOURCES_FOR_RUN_$fname
1762
1763	# COPY MAKEFILE IF EXISTING
1764	if [[ -f $add_source_path/Makefile ]]
1765	then
1766	printf "\n\n *** user Makefile from directory"
1767	printf "\n \"$add_source_path\" is used \n"
1768	sleep 1
1769	cp $add_source_path/Makefile .
1770	fi
1771
1772	for dateiname in $AddFilenames
1773	do
1774	if [[ -f $dateiname ]]
1775	then
1776	printf "\n +++ source code file \"$dateiname\" found in additional"
1777	printf "\n source code directory \"$add_source_path\" "
1778	printf "\n but was also given with option \"-s\" which means that it should be taken"
1779	printf "\n from directory \"$source_path\"."
1780	locat=source; exit
1781	fi
1782
1783	cp $add_source_path/$dateiname .
1784	source_list="$source_list $dateiname"
1785
1786	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1787	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1788	then
1789	printf "\n\n +++ user file \"$dateiname\" "
1790	printf "\n is not listed in Makefile \n"
1791	locat=source; exit
1792	else
1793
1794	# Default User-Interface von der Liste entfernen, falls Datei
1795	# ein User-Interface enthaelt
1796	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1797	# then
1798	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1799	# then
1800	# rm -rf user_interface.f90
1801	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1802	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1803	# printf "\n since a user-interface is found in file"
1804	# printf "\n \"$add_source_path/$dateiname\" \n"
1805	# sleep 3
1806	# else
1807	if [[ $found = false ]]
1808	then
1809	found=true
1810	printf "\n\n *** following user file(s) added to the"
1811	printf " files to be translated:\n "
1812	fi
1813	printf "$dateiname "
1814	sleep 0.5
1815	fi
1816	done
1817	[[ $found = true ]] && printf "\n"
1818	cd - > /dev/null
1819	fi
1820	fi
1821
1822
1823	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1824	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1825	if [[ $restart_run != true && -n $package_list ]]
1826	then
1827
1828	cd $source_path
1829
1830	for package in $package_list
1831	do
1832
1833	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1834
1835	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1836	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1837	# LIEFERT
1838	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1839
1840
1841	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1842	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1843	for source_list_name in $package_source_list
1844	do
1845	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1846	then
1847
1848	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1849	ending=`echo $source_list_name \| cut -f2 -d.`
1850	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1851	then
1852	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1853	source_list="$source_list $source_list_name"
1854	fi
1855	fi
1856	done
1857	done
1858
1859	cd - > /dev/null
1860	fi
1861
1862
1863	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1864	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1865	# if [[ "$restart_run" != true ]]
1866	# then
1867	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1868	# if [[ ! -f $makefile ]]
1869	# then
1870	# printf "\n +++ file \"$makefile\" does not exist"
1871	# locat=make; exit
1872	# else
1873	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1874	# fi
1875	# fi
1876
1877	fi # do_compile=true
1878
1879
1880	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1881	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1882	if [[ $do_compile = true ]]
1883	then
1884
1885	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1886	# ZUSAMMENSETZEN
1887	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1888	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1889	then
1890	cpp_options="${cpp_options},-D__ibm=__ibm"
1891	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1892	then
1893	cpp_options="$cpp_options -D__nec"
1894	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1895	then
1896	cpp_options="$cpp_options -D__lc"
1897	else
1898	cpp_options="$cpp_options -D__$localhost"
1899	fi
1900
1901	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1902	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1903	then
1904	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1905	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1906	else
1907	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1908	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1909	fi
1910
1911	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1912	if [[ -n $package_list ]]
1913	then
1914	for package in $package_list
1915	do
1916	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1917	then
1918	if [[ $package != "dvrp_graphics+1PE" ]]
1919	then
1920	cpp_options="${cpp_options},-D__$package=__$package"
1921	else
1922	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1923	export use_seperate_pe_for_dvrp_output=true
1924	fi
1925	else
1926	if [[ $package != "dvrp_graphics+1PE" ]]
1927	then
1928	cpp_options="$cpp_options -D__$package"
1929	else
1930	cpp_options="$cpp_options -D__dvrp_graphics"
1931	export use_seperate_pe_for_dvrp_output=true
1932	fi
1933	fi
1934	done
1935	fi
1936
1937	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1938	if [[ -n $cpp_opts ]]
1939	then
1940	for popts in $cpp_opts
1941	do
1942	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1943	then
1944	cpp_options="${cpp_options},-D__$popts=__$popts"
1945	else
1946	cpp_options="$cpp_options -D__$popts"
1947	fi
1948	done
1949	fi
1950
1951	else
1952
1953
1954	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1955	if [[ $do_remote = false ]]
1956	then
1957	if [[ ! -f $executable ]]
1958	then
1959	printf "\n +++ executable file: $executable"
1960	printf "\n does not exist"
1961	locat=executable; exit
1962	fi
1963	fi
1964	fi
1965
1966
1967	# JOBMODUS FESTSTELLEN
1968	if [[ "$ENVIRONMENT" = BATCH ]]
1969	then
1970	jobmo=BATCH
1971	else
1972	jobmo=INTERACTIVE
1973	fi
1974
1975
1976	# no interactive runs on lctit
1977	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1978	then
1979	printf "\n +++ no interactive runs allowed on host \"$host\" "
1980	printf "\n please submit batch job using mrun option \"-b\" \n"
1981	locat=normal; exit
1982	fi
1983
1984
1985	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1986	# DURCH BENUTZER ANDERWEITIG VEREINBART
1987	if [[ "$compiler_name" = "" ]]
1988	then
1989
1990	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1991	locat=compiler_name; exit
1992
1993	fi
1994
1995
1996	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1997	[[ $localhost = necriam ]] && compiler_name=mpif90
1998
1999
2000
2001	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2002	kennung=$RANDOM
2003	if [[ "$tmp_user_catalog" = "" ]]
2004	then
2005	if [[ $localhost = ibmh ]]
2006	then
2007	tmp_user_catalog=$SCRATCH
2008	elif [[ $localhost = nech ]]
2009	then
2010	tmp_user_catalog=$WRKSHR
2011	else
2012	tmp_user_catalog=/tmp
2013	fi
2014	fi
2015	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2016
2017
2018	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2019	# BESTIMMEN
2020	if [[ "$tmp_data_catalog" = "" ]]
2021	then
2022	if [[ $localhost = nech ]]
2023	then
2024	tmp_data_catalog=$WRKSHR/mrun_restart_data
2025	else
2026	tmp_data_catalog=/tmp/mrun_restart_data
2027	fi
2028	fi
2029
2030
2031	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2032	# ERSETZEN
2033	if [[ $do_remote = false && $do_compile = true ]]
2034	then
2035	eval fopts=\"$fopts\"
2036	eval lopts=\"$lopts\"
2037	fi
2038
2039
2040
2041	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2042	fopts="$fopts $netcdf_inc $dvr_inc"
2043	lopts="$lopts $netcdf_lib $dvr_lib"
2044	ROPTS="$ropts"
2045	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2046	then
2047	XOPT="-X $numprocs"
2048	fi
2049
2050
2051
2052	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2053	# GRAMM BENOETIGT
2054	done=false
2055	while [[ $done = false ]]
2056	do
2057	cputime=$cpumax
2058	if (( $cputime == 0 ))
2059	then
2060	if [[ $do_batch = true ]]
2061	then
2062	printf "\n +++ cpu-time is undefined"
2063	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2064	printf "\n >>> "
2065	read cputime 1>/dev/null 2>&1
2066	else
2067	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2068	fi
2069	else
2070	done=true
2071	fi
2072	cpumax=$cputime
2073	done
2074
2075	(( minuten = cputime / 60 ))
2076	(( sekunden = cputime - minuten * 60 ))
2077
2078
2079	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2080	if [[ $do_batch = true ]]
2081	then
2082	done=false
2083	while [[ $done = false ]]
2084	do
2085	if (( memory == 0 ))
2086	then
2087	printf "\n +++ memory demand is undefined"
2088	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2089	printf "\n >>> "
2090	read memory 1>/dev/null 2>&1
2091	else
2092	done=true
2093	fi
2094	done
2095	fi
2096
2097
2098	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2099	if [[ $do_remote = true && -z $remote_username ]]
2100	then
2101	while [[ -z $remote_username ]]
2102	do
2103	printf "\n +++ username on remote host \"$host\" is undefined"
2104	printf "\n >>> Please type username:"
2105	printf "\n >>> "
2106	read remote_username
2107	done
2108	mc="$mc -u$remote_username"
2109	fi
2110
2111
2112	# set module load command and export for subjob
2113	if [[ "$modules" != "" ]]
2114	then
2115	export module_calls="module load ${modules};"
2116	fi
2117
2118	# bugfix for wrong netcdf module
2119	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2120	then
2121	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2122	then
2123	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2124	fi
2125	fi
2126
2127
2128	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2129	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2130	then
2131	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2132	then
2133	mpilib=mpt
2134	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2135	then
2136	mpilib=mvapich
2137	fi
2138	fi
2139
2140
2141
2142	###########################################################################
2143	# HEADER-AUSGABE
2144	###########################################################################
2145
2146
2147	calltime=$(date)
2148	printf "\n"
2149	# [[ $silent = false ]] && clear
2150	printf "#--------------------------------------------------------------# \n"
2151	printf "\| $version$calltime \| \n"
2152	printf "\| \| \n"
2153	spalte1="called on:"; spalte2=$localhost_realname
2154	printf "\| $spalte1$spalte2 \| \n"
2155	if [[ $local_compile = false ]]
2156	then
2157	if [[ $do_remote = true ]]
2158	then
2159	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2160	else
2161	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2162	fi
2163	else
2164	spalte1="compiling test only!"; spalte2=""
2165	fi
2166	printf "\| $spalte1$spalte2 \| \n"
2167	if [[ -n $numprocs ]]
2168	then
2169	spalte1="number of PEs:"; spalte2=$numprocs
2170	printf "\| $spalte1$spalte2 \| \n"
2171	fi
2172	if [[ -n $tasks_per_node ]]
2173	then
2174	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2175	printf "\| $spalte1$spalte2 \| \n"
2176	fi
2177	if [[ $use_openmp = true ]]
2178	then
2179	spalte1="threads per task:"; spalte2="$threads_per_task"
2180	printf "\| $spalte1$spalte2 \| \n"
2181	fi
2182	printf "\| \| \n"
2183	if [[ $do_compile = true ]]
2184	then
2185	if [[ "$mopts" != "" ]]
2186	then
2187	spalte1="make options:"; spalte2=$mopts
2188	printf "\| $spalte1$spalte2 \| \n"
2189	zeile=$(echo "$mopts" \| cut -c41-)
2190	while [[ "$zeile" != "" ]]
2191	do
2192	spalte1=""
2193	spalte2=$zeile
2194	printf "\| $spalte1$spalte2 \| \n"
2195	zeile=$(echo "$zeile" \| cut -c41-)
2196	done
2197	fi
2198
2199	spalte1="cpp directives:"; spalte2=$cpp_options
2200	printf "\| $spalte1$spalte2 \| \n"
2201	zeile=$(echo "$cpp_options" \| cut -c41-)
2202	while [[ "$zeile" != "" ]]
2203	do
2204	spalte1=""
2205	spalte2=$zeile
2206	printf "\| $spalte1$spalte2 \| \n"
2207	zeile=$(echo "$zeile" \| cut -c41-)
2208	done
2209
2210	spalte1="compiler options:"; spalte2="$fopts"
2211	printf "\| $spalte1$spalte2 \| \n"
2212	zeile=$(echo "$fopts" \| cut -c41-)
2213	while [[ "$zeile" != "" ]]
2214	do
2215	spalte1=""
2216	spalte2=$zeile
2217	printf "\| $spalte1$spalte2 \| \n"
2218	zeile=$(echo "$zeile" \| cut -c41-)
2219	done
2220
2221	spalte1="linker options:"; spalte2=$lopts
2222	printf "\| $spalte1$spalte2 \| \n"
2223	zeile=$(echo "$lopts" \| cut -c41-)
2224	while [[ "$zeile" != "" ]]
2225	do
2226	spalte1=""
2227	spalte2=$zeile
2228	printf "\| $spalte1$spalte2 \| \n"
2229	zeile=$(echo "$zeile" \| cut -c41-)
2230	done
2231
2232	spalte1="modules to be load:"; spalte2=$modules
2233	printf "\| $spalte1$spalte2 \| \n"
2234	zeile=$(echo "$modules" \| cut -c41-)
2235	while [[ "$zeile" != "" ]]
2236	do
2237	spalte1=""
2238	spalte2=$zeile
2239	printf "\| $spalte1$spalte2 \| \n"
2240	zeile=$(echo "$zeile" \| cut -c41-)
2241	done
2242
2243	spalte1="main program":; spalte2=$mainprog
2244	printf "\| $spalte1$spalte2 \| \n"
2245	else
2246	spalte1=executable:; spalte2=$executable
2247	printf "\| $spalte1$spalte2 \| \n"
2248	fi
2249	printf "\| \| \n"
2250	spalte1="base name of files":; spalte2=$fname
2251	printf "\| $spalte1$spalte2 \| \n"
2252	if [[ $fname != $afname ]]
2253	then
2254	spalte1="base name of input files":; spalte2=$afname
2255	printf "\| $spalte1$spalte2 \| \n"
2256	fi
2257	spalte1="INPUT control list":; spalte2=$input_list
2258	printf "\| $spalte1$spalte2 \| \n"
2259	spalte1="OUTPUT control list":; spalte2=$output_list
2260	printf "\| $spalte1$spalte2 \| \n"
2261
2262	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2263	then
2264	spalte1="memory demand / PE":; spalte2="$memory MB"
2265	printf "\| $spalte1$spalte2 \| \n"
2266	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2267	printf "\| $spalte1$spalte2 \| \n"
2268	fi
2269
2270	if [[ $do_compile = true ]]
2271	then
2272	printf "\| \| \n"
2273	printf "\| Files to be compiled: \| \n"
2274	zeile=$source_list
2275	while [[ "$zeile" != "" ]]
2276	do
2277	spalte3=$zeile
2278	printf "\| $spalte3 \| \n"
2279	zeile=$(echo "$zeile" \| cut -c61-)
2280	done
2281	fi
2282	printf "#--------------------------------------------------------------#"
2283
2284
2285
2286	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2287	if [[ $do_trace = true ]]
2288	then
2289	(( i = 0 ))
2290	while (( i < iin ))
2291	do
2292	(( i = i + 1 ))
2293	if (( i == 1 ))
2294	then
2295	printf "\n\n >>> INPUT-file assignments:\n"
2296	fi
2297	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2298	done
2299	(( i = 0 ))
2300	while (( i < iout ))
2301	do
2302	(( i = i + 1 ))
2303	if (( i == 1 ))
2304	then
2305	printf "\n\n >>> OUTPUT-file assignments:\n"
2306	fi
2307	printf "\n ${localout[$i]} : ${pathout[$i]}"
2308	done
2309	(( i = 0 ))
2310	while (( i < iic ))
2311	do
2312	(( i = i + 1 ))
2313	if (( i == 1 ))
2314	then
2315	printf "\n\n >>> INPUT-commands:\n"
2316	fi
2317	printf "\n ${in_command[$i]}"
2318	done
2319	(( i = 0 ))
2320	while (( i < ioc ))
2321	do
2322	(( i = i + 1 ))
2323	if (( i == 1 ))
2324	then
2325	printf "\n\n >>> OUTPUT-commands:\n"
2326	fi
2327	printf "\n ${out_command[$i]}"
2328	done
2329	fi
2330
2331
2332	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2333	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2334	then
2335	antwort=dummy
2336	printf "\n\n"
2337	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2338	do
2339	printf " >>> everything o.k. (y/n) ? "
2340	read antwort
2341	done
2342	if [[ $antwort = n \|\| $antwort = N ]]
2343	then
2344	locat=user_abort; (( iec = 0 )); exit
2345	fi
2346	if [[ $do_batch = true ]]
2347	then
2348	printf " >>> batch-job will be created and submitted"
2349	else
2350	if [[ $local_compile = false ]]
2351	then
2352	printf " >>> MRUN will now continue to execute on this machine"
2353	else
2354	printf " >>> a test compilation will now be carried out on this machine"
2355	fi
2356	fi
2357	fi
2358
2359
2360
2361
2362	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2363	# CHENDE AKTIONEN DURCHGEFUEHRT
2364	if [[ $do_batch = false ]]
2365	then
2366
2367
2368	# TEMPORAEREN KATALOG ERZEUGEN
2369	mkdir -p $TEMPDIR
2370	chmod go+rx $TEMPDIR
2371	tmpcreate=true
2372
2373	# set striping on lustre file system
2374	# if [[ $localhost = lcsgih ]]
2375	# then
2376	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2377	# lfs getstripe $TEMPDIR
2378	# fi
2379
2380
2381	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2382	# TEMPORAERES VERZEICHNIS KOPIEREN
2383	if [[ $do_compile = true ]]
2384	then
2385
2386	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2387	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2388	if [[ $localhost = nech ]]
2389	then
2390	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2391	if mkdir -p $TEMPDIR_COMPILE
2392	then
2393	printf "\n *** \"$TEMPDIR_COMPILE\" "
2394	printf "\n is generated as temporary directory for cross compiling\n"
2395	else
2396	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2397	printf "\n needed for cross compilation failed"
2398	locat=compile
2399	exit
2400	fi
2401	else
2402	TEMPDIR_COMPILE=$TEMPDIR
2403	fi
2404
2405
2406	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2407	line=""
2408	grep "%depository_path" $config_file > tmp_mrun
2409	while read line
2410	do
2411	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2412	then
2413	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2414	then
2415	global_depository_path=`echo $line \| cut -d" " -s -f2`
2416	fi
2417	fi
2418	done < tmp_mrun
2419
2420	line=""
2421	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2422	while read line
2423	do
2424	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2425	then
2426	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2427	then
2428	local_depository_path=`echo $line \| cut -d" " -s -f2`
2429	fi
2430	fi
2431	done < tmp_mrun
2432
2433	if [[ "$local_depository_path" = "" ]]
2434	then
2435	if [[ "$global_depository_path" != "" ]]
2436	then
2437	local_depository_path=$global_depository_path
2438	else
2439	printf "\n\n +++ no depository path found in configuration file"
2440	printf "\n for local host \"$localhost\" "
2441	printf "\n please set \"\%depository_path\" in configuration file\n"
2442	locat=config_file; exit
2443	fi
2444	fi
2445	eval local_depository_path=$local_depository_path
2446	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2447	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2448
2449
2450	basename=`print $mainprog \| cut -f1 -d"."`
2451	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2452	if [[ ! -f $make_depository ]]
2453	then
2454	printf "\n"
2455	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2456	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2457	else
2458	cp $make_depository $TEMPDIR_COMPILE
2459	cd $TEMPDIR_COMPILE
2460	tar -xf $make_depository > /dev/null 2>&1
2461	cd - > /dev/null
2462	fi
2463
2464	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2465
2466	else
2467
2468	cp $executable ${TEMPDIR}/a.out
2469
2470	fi
2471
2472
2473	# WECHSEL IN TEMPORAEREN KATALOG
2474	cd $TEMPDIR
2475	printf "\n *** changed to temporary directory: $TEMPDIR"
2476
2477
2478	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2479	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2480	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2481	# ERMITTELN
2482	(( i = 0 ))
2483	while (( i < iout ))
2484	do
2485	(( i = i + 1 ))
2486	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2487	then
2488	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2489	else
2490	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2491	fi
2492	done
2493
2494
2495	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2496	if [[ $do_compile = true ]]
2497	then
2498
2499
2500	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2501	printf "\n\n\n *** compilation starts \n$striche\n"
2502	printf " *** compilation with make using following options:\n"
2503	printf " make depository: $make_depository"
2504	if [[ "$mopts" != "" ]]
2505	then
2506	printf " make options: $mopts\n"
2507	fi
2508	printf " compilername: $compiler_name\n"
2509	printf " compiler options: $fopts\n"
2510	printf " preprocessor directives: $cpp_options \n"
2511	printf " linker options: $lopts \n"
2512	if [[ "$modules" != "" ]]
2513	then
2514	printf " modules to be load: $modules \n"
2515	fi
2516	printf " source code files: $source_list \n"
2517
2518	if [[ $localhost = nech ]]
2519	then
2520	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2521	cp $TEMPDIR_COMPILE/a.out .
2522	[[ $? != 0 ]] && compile_error=true
2523	rm -rf $TEMPDIR_COMPILE
2524	elif [[ $localhost = ibmh ]]
2525	then
2526	printf " compiler is called via ssh on \"plogin1\" \n"
2527	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2528	[[ ! -f a.out ]] && compile_error=true
2529	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2530	elif [[ $localhost = lcsgib ]]
2531	then
2532	printf " compiler is called via ssh on \"bicegate0\" \n"
2533	ssh bicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2534	[[ ! -f a.out ]] && compile_error=true
2535	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2536	elif [[ $localhost = lcsgih ]]
2537	then
2538	printf " compiler is called via ssh on \"hicegate0\" \n"
2539	ssh hicegate0 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2540	[[ ! -f a.out ]] && compile_error=true
2541	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2542	else
2543	[[ $localhost = lcxt4 ]] && . /opt/modules/default/init/ksh
2544	[[ "$module_calls" != "" ]] && eval $module_calls
2545	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2546	fi
2547
2548	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2549	then
2550	printf "\n +++ error occured while compiling or linking"
2551	locat=compile
2552
2553	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2554	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2555	# then
2556	exit
2557	# else
2558	# locat=normal
2559	# fi
2560	else
2561	printf "$striche\n *** compilation finished \n"
2562	fi
2563	fi
2564
2565
2566	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2567	if [[ $local_compile = true ]]
2568	then
2569	cd $HOME
2570	rm -rf $TEMPDIR
2571	locat=local_compile; exit
2572	fi
2573
2574
2575	# BEREITSTELLEN DER INPUT-DATEIEN
2576	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2577	(( i = 0 ))
2578	while (( i < iin ))
2579	do
2580	(( i = i + 1 ))
2581	if (( i == 1 ))
2582	then
2583	printf "\n\n *** providing INPUT-files:\n$striche"
2584	fi
2585
2586
2587	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2588	if [[ "${transin[$i]}" = unavailable ]]
2589	then
2590	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2591	then
2592	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2593	printf "\n is not available!"
2594	else
2595	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2596	printf "\n is not available!"
2597	fi
2598	continue
2599	fi
2600
2601	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2602	files_for_pes=false; datentyp=file
2603	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2604	then
2605	files_for_pes=true; datentyp=directory
2606	actionin[$i]=""
2607	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2608	then
2609	actionin[$i]=""
2610	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2611	then
2612	files_for_pes=true; datentyp=directory
2613	actionin[$i]="ar"
2614	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2615	then
2616	actionin[$i]="ar"
2617	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2618	then
2619	files_for_pes=true; datentyp=directory
2620	actionin[$i]="fl"
2621	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2622	then
2623	actionin[$i]="fl"
2624	fi
2625
2626	if [[ $files_for_pes = true ]]
2627	then
2628	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2629	else
2630	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2631	fi
2632
2633	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2634	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2635	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2636	# SERVER ZU HOLEN
2637	if [[ "${actionin[$i]}" = fl ]]
2638	then
2639	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2640	if [[ $files_for_pes = false ]]
2641	then
2642	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2643	then
2644	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2645	got_tmp[$i]=true
2646	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2647	then
2648	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2649	printf "\n *** trying to use backup copy in \"$WORK\" "
2650	cp $WORK/${frelin[$i]} ${localin[$i]}
2651	else
2652	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2653	printf "\n or \"$tmp_data_catalog\" does not exist!"
2654	printf "\n *** trying to get copy from archive"
2655	actionin[$i]=ar
2656	fi
2657	else
2658	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2659	then
2660	mkdir ${localin[$i]}
2661	cd $tmp_data_catalog/${frelin[$i]}
2662	for file in $(ls *)
2663	do
2664	ln $file $TEMPDIR/${localin[$i]}
2665	done
2666	cd $TEMPDIR
2667	got_tmp[$i]=true
2668	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2669	then
2670	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2671	printf "\n *** trying to use backup copy in \"$WORK\" "
2672	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2673	else
2674	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2675	printf "\n or \"$tmp_data_catalog\" does not exist!"
2676	printf "\n *** trying to get copy from archive"
2677	actionin[$i]=ar
2678	fi
2679	fi
2680	fi
2681
2682
2683	# DATEI LIEGT AUF ARCHIV-SERVER
2684	if [[ "${actionin[$i]}" = ar ]]
2685	then
2686
2687	if [[ $files_for_pes = false ]]
2688	then
2689	printf "\n file will be restored from archive-system ($archive_system)!"
2690	else
2691	printf "\n directory will be restored from archive-system ($archive_system)!"
2692	fi
2693
2694	file_restored=false
2695
2696	if [[ $archive_system = asterix ]]
2697	then
2698	do_stagein=true
2699	(( stagein_anz = 0 ))
2700	while [[ $do_stagein = true ]]
2701	do
2702	if [[ $files_for_pes = false ]]
2703	then
2704	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2705	else
2706	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2707	fi
2708	cat STAGEIN_OUTPUT
2709	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2710	then
2711	file_restored=true
2712	do_stagein=false
2713	else
2714	(( stagein_anz = stagein_anz + 1 ))
2715	if (( stagein_anz == 10 ))
2716	then
2717	printf "\n +++ stagein stoped after 10 tries"
2718	locat=stage
2719	exit
2720	fi
2721	printf "\n +++ restoring from archive failed, trying again:"
2722	sleep 900
2723	fi
2724	done
2725	elif [[ $archive_system = DMF ]]
2726	then
2727	if [[ $files_for_pes = false ]]
2728	then
2729	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2730	locat=DMF
2731	exit
2732	else
2733	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2734	cp -r $ARCHIVE/${frelin[$i]} $PWD
2735	file_restored=true
2736	fi
2737	elif [[ $archive_system = tivoli ]]
2738	then
2739	if [[ $files_for_pes = false ]]
2740	then
2741	if [[ $localhost = lcsgih ]]
2742	then
2743	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2744	else
2745	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2746	fi
2747	else
2748	(( inode = 0 ))
2749	while (( inode < nodes ))
2750	do
2751	if [[ $localhost = lcsgih ]]
2752	then
2753	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2754	else
2755	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2756	fi
2757	(( inode = inode + 1 ))
2758	done
2759	fi
2760	file_restored=true
2761	elif [[ $archive_system = ut ]]
2762	then
2763	if [[ $files_for_pes = false ]]
2764	then
2765	cp $UT/${frelin[$i]} .
2766	else
2767	(( inode = 0 ))
2768	while (( inode < nodes ))
2769	do
2770	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2771	(( inode = inode + 1 ))
2772	done
2773	fi
2774	file_restored=true
2775	else
2776	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2777	locat=rearchive
2778	exit
2779	fi
2780
2781	if [[ $file_restored = true ]]
2782	then
2783
2784	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2785	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2786	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2787	if [[ $files_for_pes = false ]]
2788	then
2789	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2790	else
2791	mkdir $tmp_data_catalog/${frelin[$i]}
2792	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2793	fi
2794	got_tmp[$i]=true
2795
2796	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2797	mv ${frelin[$i]} ${localin[$i]}
2798
2799	fi
2800	fi
2801
2802
2803	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2804	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2805	then
2806
2807	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2808	then
2809
2810	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2811	printf "\n file will be provided for $numprocs processors"
2812	mkdir ${localin[$i]}
2813	ival=$numprocs
2814	(( ii = 0 ))
2815	while (( ii <= ival-1 ))
2816	do
2817	if (( ii < 10 ))
2818	then
2819	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2820	elif (( ii < 100 ))
2821	then
2822	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2823	elif (( ii < 1000 ))
2824	then
2825	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2826	else
2827	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2828	fi
2829	(( ii = ii + 1 ))
2830	done
2831
2832	else
2833
2834	if [[ $files_for_pes = true ]]
2835	then
2836
2837	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2838	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2839	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2840	# PER MOVE UMBENANNT WERDEN
2841	printf "\n providing $numprocs files for the respective processors"
2842	mkdir ${localin[$i]}
2843	if [[ $link_local_input = true ]]
2844	then
2845	printf " using ln -f\n"
2846	cd ${absnamein[$i]}
2847	for file in $(ls *)
2848	do
2849	ln -f $file ${localin[$i]}
2850	done
2851	cd $TEMPDIR
2852	fi
2853	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2854	if [[ ! -f "${localin[$i]}/_0000" ]]
2855	then
2856	if [[ $link_local_input = true ]]
2857	then
2858	printf " ln failed for .../_0000, using cp...\n"
2859	fi
2860	cp -r ${absnamein[$i]}/* ${localin[$i]}
2861	fi
2862
2863	else
2864	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2865	if [[ $link_local_input = true ]]
2866	then
2867	printf " using ln -f\n"
2868	ln -f ${absnamein[$i]} ${localin[$i]}
2869	fi
2870	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2871	if [[ ! -f "${localin[$i]}" ]]
2872	then
2873	if [[ $link_local_input = true ]]
2874	then
2875	printf " ln failed, using cp...\n"
2876	fi
2877	cp ${absnamein[$i]} ${localin[$i]}
2878	fi
2879	fi
2880	fi
2881	fi
2882
2883	done
2884	if (( i != 0 ))
2885	then
2886	printf "\n$striche\n *** all INPUT-files provided \n"
2887	fi
2888
2889
2890	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2891	(( i = 0 ))
2892	while (( i < iic ))
2893	do
2894	(( i = i + 1 ))
2895	if (( i == 1 ))
2896	then
2897	printf "\n\n *** execution of INPUT-commands:\n$striche"
2898	fi
2899	printf "\n >>> ${in_command[$i]}"
2900	eval ${in_command[$i]}
2901	if (( i == iic ))
2902	then
2903	printf "\n$striche\n"
2904	fi
2905	done
2906
2907
2908	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2909	cpurest=${cpumax}.
2910
2911
2912	# START DVR STREAMING SERVER
2913	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2914	then
2915	if [[ "$dvr_server" != "" ]]
2916	then
2917
2918	printf "\n\n *** preparing the dvr streaming server configuration file"
2919
2920	# Check, if a dvr server is already running
2921	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2922	if [[ "$running_dvrserver_id" != "" ]]
2923	then
2924
2925	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2926	printf "\n This server is used instead starting a new one!"
2927	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2928
2929	else
2930
2931	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2932	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2933	then
2934	cp ${PALM_BIN}/.dvrserver.config .
2935
2936	# Entering the BASEDIR, UID and GID into this file
2937	user_id=`id -u`
2938	group_id=`id -g`
2939	# & is needed as seperator, because TEMPDIR contains /
2940	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2941	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2942	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2943	mv .dvrserver.3 .dvrserver.config
2944	rm .dvrserver.1 .dvrserver.2
2945
2946	# Start dvr server in background, get his id and print on terminal
2947	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2948	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2949	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2950	local_dvrserver_running=.TRUE.
2951	else
2952	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2953	printf "\n \"$PALM_BIN\" "
2954	locat=dvr
2955	exit
2956	fi
2957
2958	fi
2959
2960	else
2961	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2962	fi
2963	fi
2964
2965
2966	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2967	# LESEN VON PALM)
2968	cat > ENVPAR << %%END%%
2969	&envpar run_identifier = '$fname', host = '$localhost',
2970	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2971	maximum_cpu_time_allowed = ${cpumax}.,
2972	revision = '$global_revision',
2973	local_dvrserver_running = $local_dvrserver_running /
2974
2975	%%END%%
2976
2977
2978	# PROGRAMMSTART
2979	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2980	PATH=$PATH:$TEMPDIR
2981
2982	# MPI debug option (argument checking, slows down execution due to increased latency)
2983	if [[ "$mpi_debug" = true ]]
2984	then
2985	export MPI_CHECK_ARGS=1
2986	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2987	fi
2988
2989	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2990	then
2991	if [[ "$ENVIRONMENT" = BATCH ]]
2992	then
2993	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2994	then
2995	printf "\n +++ debug is allowed in interactive mode only"
2996	locat=debug
2997	exit
2998	fi
2999	fi
3000	if [[ $localhost = decalpha ]]
3001	then
3002	dxladebug a.out
3003	elif [[ $localhost = ibmh ]]
3004	then
3005
3006	# SETUP THE IBM MPI ENVIRONMENT
3007	export MP_SHARED_MEMORY=yes
3008	export AIXTHREADS_SCOPE=S
3009	export OMP_NUM_THREADS=$threads_per_task
3010	export AUTHSTATE=files
3011	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3012
3013	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3014	export MP_ADAPTER_USE=shared
3015	export MP_CPU_USE=multiple
3016	export MP_TIMEOUT=1200
3017
3018	unset MP_TASK_AFFINITY
3019
3020	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3021	#(( ii = 1 ))
3022	#while (( ii <= $numprocs ))
3023	#do
3024	# echo $localhost_realname >> hostfile
3025	# (( ii = ii + 1 ))
3026	#done
3027	#export MP_HOSTFILE=hostfile
3028
3029	if [[ "$LOADLBATCH" = yes ]]
3030	then
3031	totalview poe a.out $ROPTS
3032	else
3033	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3034	export TVDSVRLAUNCHCMD=ssh
3035	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3036	fi
3037	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3038	then
3039	# CURRENTLY NO DEBUGGER ON LCSGI
3040	if [[ $run_coupled_model = true ]]
3041	then
3042	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3043	locat=debug
3044	exit
3045	else
3046	echo "no_coupling" > runfile_atmos
3047	fi
3048	(( ii = $numprocs / $threads_per_task ))
3049	export OMP_NUM_THREADS=$threads_per_task
3050	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3051	if [[ $threads_per_task != 1 ]]
3052	then
3053	printf "\n threads per task: $threads_per_task"
3054	fi
3055	printf "\n\n"
3056	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3057	then
3058	# export MPI_LAUNCH_TIMEOUT=360
3059	if [[ "$totalview" = true ]]
3060	then
3061	printf "\n running totalview debugger"
3062	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3063	else
3064	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3065	fi
3066	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3067	then
3068	# ulimit -s 300000 # A too large stack size causes problems
3069	# export MV2_NUM_PORTS=2
3070	# export MV2_CPU_MAPPING=0:1:2:3
3071	if [[ "$totalview" = true ]]
3072	then
3073	printf "\n running totalview debugger"
3074	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3075	else
3076	mpiexec ./a.out $ROPTS < runfile_atmos
3077	fi
3078	fi
3079	else
3080	printf "\n +++ no debug available on \"$localhost\" "
3081	printf "\n or not implemented in mrun so far"
3082	locat=debug
3083	exit
3084	fi
3085
3086	# end debug mode
3087	else
3088
3089	# normal execution
3090	if [[ -n $numprocs ]]
3091	then
3092	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3093	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3094	then
3095	# SETUP THE IBM MPI ENVIRONMENT
3096	if [[ $host != ibmh ]]
3097	then
3098	export MP_SHARED_MEMORY=yes
3099	export AIXTHREAD_SCOPE=S
3100	export OMP_NUM_THREADS=$threads_per_task
3101	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3102	export AUTHSTATE=files
3103	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3104	# export MP_PRINTENV=yes
3105
3106	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3107	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3108	export MP_WAIT_MODE=poll
3109	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3110	fi
3111	if [[ "$LOADLBATCH" = yes ]]
3112	then
3113	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3114	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3115	then
3116	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3117	else
3118	if [[ $run_coupled_model = false ]]
3119	then
3120	if [[ "$ocean_file_appendix" = true ]]
3121	then
3122	echo "precursor_ocean" > runfile_atmos
3123	else
3124	echo "precursor_atmos" > runfile_atmos
3125	fi
3126	else
3127	(( iia = $numprocs_atmos / $threads_per_task ))
3128	(( iio = $numprocs_ocean / $threads_per_task ))
3129	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3130	printf "\n using $coupled_mode coupling"
3131	printf "\n\n"
3132	echo "coupled_run $iia $iio" > runfile_atmos
3133	fi
3134	poe ./a.out $ROPTS < runfile_atmos
3135	fi
3136	else
3137	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3138	then
3139	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3140	elif [[ $localhost = ibmku \|\| $localhost = ibmy ]]
3141	then
3142	if [[ -f $hostfile ]]
3143	then
3144	cp $hostfile hostfile
3145	else
3146	(( ii = 1 ))
3147	while (( ii <= $numprocs ))
3148	do
3149	echo $localhost_realname >> hostfile
3150	(( ii = ii + 1 ))
3151	done
3152	fi
3153	export MP_HOSTFILE=hostfile
3154	if [[ $run_coupled_model = false ]]
3155	then
3156	if [[ "$ocean_file_appendix" = true ]]
3157	then
3158	echo "precursor_ocean" > runfile_atmos
3159	else
3160	echo "precursor_atmos" > runfile_atmos
3161	fi
3162	else
3163	(( iia = $numprocs_atmos / $threads_per_task ))
3164	(( iio = $numprocs_ocean / $threads_per_task ))
3165	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3166	printf "\n using $coupled_mode coupling"
3167	printf "\n\n"
3168	echo "coupled_run $iia $iio" > runfile_atmos
3169	fi
3170	if [[ $localhost = ibmy ]]
3171	then
3172	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3173	else
3174	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3175	fi
3176
3177	else
3178	if [[ "$host_file" = "" ]]
3179	then
3180	printf "\n +++ no hostfile given in configuration file"
3181	locat=config_file
3182	exit
3183	else
3184	eval host_file=$host_file
3185	fi
3186	export MP_HOSTFILE=$host_file
3187	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3188	fi
3189	fi
3190	elif [[ $host = nech \|\| $host = necriam ]]
3191	then
3192	(( ii = nodes ))
3193	if [[ $ii = 1 ]]
3194	then
3195	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3196	export MPIPROGINF=YES
3197	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3198	echo "*** execution on single node with mpirun"
3199	mpirun -np $numprocs ./a.out $ROPTS
3200	else
3201	(( i = 0 ))
3202	while (( i < ii ))
3203	do
3204	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3205	(( i = i + 1 ))
3206	done
3207
3208	echo "#!/bin/sh" > mpi_exec_shell
3209	echo " " >> mpi_exec_shell
3210	echo "set -u" >> mpi_exec_shell
3211	echo "F_ERRCNT=0" >> mpi_exec_shell
3212	echo "MPIPROGINV=YES" >> mpi_exec_shell
3213	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3214	echo "cpurest=$cpurest" >> mpi_exec_shell
3215	echo "fname=$fname" >> mpi_exec_shell
3216	echo "localhost=$localhost" >> mpi_exec_shell
3217	echo "return_addres=$return_addres" >> mpi_exec_shell
3218	echo "return_username=$return_username" >> mpi_exec_shell
3219	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3220	echo "write_binary=$write_binary" >> mpi_exec_shell
3221	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3222	echo " " >> mpi_exec_shell
3223	echo "export F_ERRCNT" >> mpi_exec_shell
3224	echo "export MPIPROGINV" >> mpi_exec_shell
3225	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3226	echo "export cpurest" >> mpi_exec_shell
3227	echo "export fname" >> mpi_exec_shell
3228	echo "export localhost" >> mpi_exec_shell
3229	echo "export return_addres" >> mpi_exec_shell
3230	echo "export return_username" >> mpi_exec_shell
3231	echo "export tasks_per_node" >> mpi_exec_shell
3232	echo "export write_binary" >> mpi_exec_shell
3233	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3234	echo " " >> mpi_exec_shell
3235	echo "exec ./a.out" >> mpi_exec_shell
3236
3237	chmod u+x mpi_exec_shell
3238	export MPIPROGINF=YES
3239	mpirun -f multinode_config &
3240	wait
3241
3242	fi
3243	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3244	then
3245
3246	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3247	# DOES NOT EXIST
3248	if [[ $host != lcsgih && $host != lcsgib ]]
3249	then
3250	if [[ -f $hostfile ]]
3251	then
3252	cp $hostfile hostfile
3253	else
3254	(( ii = 1 ))
3255	while (( ii <= $numprocs / $threads_per_task ))
3256	do
3257	echo $localhost_realname >> hostfile
3258	(( ii = ii + 1 ))
3259	done
3260	fi
3261	eval zeile=\"`head -n $ii hostfile`\"
3262	printf "\n *** running on: $zeile"
3263	fi
3264
3265	(( ii = $numprocs / $threads_per_task ))
3266	export OMP_NUM_THREADS=$threads_per_task
3267	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3268	if [[ $threads_per_task != 1 ]]
3269	then
3270	# increase stack size to unlimited, because large runs
3271	# may abort otherwise
3272	ulimit -Ss unlimited
3273	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3274	fi
3275	if [[ $run_coupled_model = false ]]
3276	then
3277	if [[ "$ocean_file_appendix" = true ]]
3278	then
3279	echo "precursor_ocean" > runfile_atmos
3280	else
3281	echo "precursor_atmos" > runfile_atmos
3282	fi
3283	printf "\n\n"
3284	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3285	then
3286	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3287	then
3288	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3289	# export MPI_DSM_DISTRIBUTE=1
3290	# MPI_DSM_CPULIST: pin MPI processes to cores
3291	if [[ $use_openmp = false ]]
3292	then
3293	if [[ "$sgi_feature" = ice2 ]]
3294	then
3295	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3296	else
3297	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3298	fi
3299	else
3300	unset MPI_DSM_CPULIST
3301	fi
3302	# MPI_IB_RAILS: use both IB rails on ICE2
3303	export MPI_BUFS_PER_HOST=512
3304	export MPI_IB_RAILS=2
3305	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3306	export MPI_CONNECTIONS_THRESHOLD=8192
3307	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3308	export MPI_TYPE_DEPTH=20
3309	echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3310	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3311
3312	# next is test for openmp usage
3313	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3314	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3315	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3316	then
3317	export MV2_NUM_PORTS=2
3318	# The default setting of MV2_CPU_MAPPING gives best results
3319	# export MV2_ENABLE_AFFINITY=1
3320	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3321	# if [[ "$sgi_feature" = ice2 ]]
3322	# then
3323	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3324	# else
3325	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3326	# fi
3327	[[ $use_openmp = true ]] && unset MV2_CPU_MAPPING
3328	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3329	if [[ $use_openmp = true ]]
3330	then
3331	mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3332	else
3333	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3334	fi
3335	fi
3336	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3337	then
3338	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3339	else
3340	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3341	fi
3342	else
3343
3344	# currently there is no full MPI-2 support on ICE and XT4
3345	(( iia = $numprocs_atmos / $threads_per_task ))
3346	(( iio = $numprocs_ocean / $threads_per_task ))
3347	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3348	printf "\n using $coupled_mode coupling"
3349	printf "\n\n"
3350
3351	if [[ $coupled_mode = "mpi2" ]]
3352	then
3353	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3354	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3355	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3356	then
3357
3358	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3359	then
3360	# export MPI_LAUNCH_TIMEOUT=360
3361	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3362	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3363	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3364	then
3365	# ulimit -s 300000 # A too large stack size causes problems
3366	# export MV2_NUM_PORTS=2
3367	# export MV2_CPU_MAPPING=0:1:2:3
3368	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3369	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3370	fi
3371
3372	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3373	then
3374
3375	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3376	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3377
3378	else
3379	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3380	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3381	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3382	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3383	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3384	fi
3385	wait
3386
3387	else
3388
3389	echo "coupled_run $iia $iio" > runfile_atmos
3390	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3391	then
3392
3393	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3394	then
3395	# export MPI_LAUNCH_TIMEOUT=360
3396	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3397	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3398	then
3399	# ulimit -s 300000 # A too large stack size causes problems
3400	# export MV2_NUM_PORTS=2
3401	# export MV2_CPU_MAPPING=0:1:2:3
3402	mpiexec ./a.out $ROPTS < runfile_atmos
3403	fi
3404
3405	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3406	then
3407
3408	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3409
3410	elif [[ $host = lck ]]
3411	then
3412	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3413	fi
3414	wait
3415	fi
3416
3417	fi
3418	elif [[ $host = decalpha ]]
3419	then
3420	dmpirun -np $numprocs a.out $ROPTS
3421	elif [[ $host = lckyoto ]]
3422	then
3423	set -xv
3424	export P4_RSHCOMMAND=plesh
3425	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3426	if [[ "$ENVIRONMENT" = BATCH ]]
3427	then
3428	if [[ "$cond2" = fujitsu ]]
3429	then
3430	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3431	elif [[ "cond2" = pgi ]]
3432	then
3433	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3434	else
3435	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3436	fi
3437	else
3438	if [[ "$cond2" = "" ]]
3439	then
3440	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3441	else
3442	mpirun -np $numprocs ./a.out $ROPTS
3443	fi
3444	fi
3445	set +xv
3446	elif [[ $host = lctit ]]
3447	then
3448	mpirun -np $numprocs -hostfile $PBS_NODEFILE ./a.out $ROPTS
3449	else
3450	mpprun -n $numprocs a.out $ROPTS
3451	fi
3452	[[ $? != 0 ]] && execution_error=true
3453
3454
3455	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3456	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3457	then
3458	apprentice
3459	fi
3460	else
3461	a.out $ROPTS
3462	fi
3463	fi
3464	if [[ $? != 0 \|\| $execution_error = true ]]
3465	then
3466
3467	# ABBRUCH BEI LAUFZEITFEHLER
3468	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3469	printf "\n +++ runtime error occured"
3470	locat=execution
3471	exit
3472	else
3473	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3474	printf "\n$striche\n *** execution finished \n"
3475
3476	# Stop the dvr streaming server and process the dvr output in order
3477	# to create dvrs- and html-files containing all streams
3478	if [[ "$dvrserver_id" != "" ]]
3479	then
3480	kill $dvrserver_id
3481	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3482
3483	# If there is a directory, data have been output by the
3484	# streaming server. Otherwise, user has chosen dvrp_output=local
3485	if [[ -d DATA_DVR ]]
3486	then
3487
3488	# Add the current dvr configuration file to the dvr output
3489	# directory
3490	cp .dvrserver.config DATA_DVR
3491
3492	# Process the dvr output (option -s for also generating
3493	# sequence mode data)
3494	process_dvr_output -d DATA_DVR -f $fname -s
3495
3496	else
3497
3498	# Process the local output
3499	process_dvr_output -l -d DATA_DVR -f $fname
3500
3501	fi
3502
3503	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3504	then
3505
3506	# Process dvr output generated in local mode (dvrp_output=local)
3507	process_dvr_output -l -d DATA_DVR -f $fname
3508
3509	fi
3510	fi
3511
3512
3513
3514	# Call of combine_plot_fields in order to merge single files written
3515	# by each PE into one file.
3516	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3517	then
3518	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3519	printf "\n 2d- and/or 3d-data may be incomplete!"
3520	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3521	else
3522	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3523	combine_plot_fields${block}.x
3524	fi
3525
3526
3527
3528	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3529	(( i = 0 ))
3530	while (( i < ioc ))
3531	do
3532	(( i = i + 1 ))
3533	if (( i == 1 ))
3534	then
3535	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3536	fi
3537	printf "\n >>> ${out_command[$i]}"
3538	eval ${out_command[$i]}
3539	if (( i == ioc ))
3540	then
3541	printf "\n$striche\n"
3542	fi
3543	done
3544
3545
3546	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3547	if [[ $do_trace = true ]]
3548	then
3549	printf "\n\n"
3550	ls -al
3551	fi
3552
3553
3554
3555	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3556	(( i = 0 ))
3557	while (( i < iout ))
3558	do
3559	(( i = i + 1 ))
3560	if (( i == 1 ))
3561	then
3562	printf "\n\n *** saving OUTPUT-files:\n$striche"
3563	fi
3564
3565	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3566	files_for_pes=false; filetyp=file
3567	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3568	then
3569	files_for_pes=true; filetyp=directory
3570	actionout[$i]=""
3571	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3572	then
3573	actionout[$i]=""
3574	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3575	then
3576	files_for_pes=true; filetyp=directory
3577	actionout[$i]="ar"
3578	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3579	then
3580	actionout[$i]="ar"
3581	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3582	then
3583	files_for_pes=true; filetyp=directory
3584	actionout[$i]="fl"
3585	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3586	then
3587	actionout[$i]="fl"
3588	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3589	then
3590	files_for_pes=true; filetyp=directory
3591	actionout[$i]="tr"
3592	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3593	then
3594	actionout[$i]="tr"
3595	fi
3596
3597	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3598	then
3599	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3600	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3601	then
3602	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3603	else
3604
3605
3606	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3607	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3608	# REMOTE-RECHNUNGEN
3609	if [[ "${actionout[$i]}" = tr ]]
3610	then
3611	if [[ $localhost != $fromhost ]]
3612	then
3613	if [[ $files_for_pes = false ]]
3614	then
3615	cps=""
3616	cst=""
3617	else
3618	cps=-c
3619	cst="/"
3620	fi
3621	if [[ $localhost = nech ]]
3622	then
3623
3624	# TRANSFER IN EIGENSTAENDIGEM JOB
3625	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3626	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3627	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3628	if [[ $files_for_pes = false ]]
3629	then
3630	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3631	else
3632	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3633	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3634	fi
3635
3636	echo "set -x" > transfer_${localout[$i]}
3637	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3638
3639	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3640	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3641	printf "\n or higher cycle\n"
3642	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3643
3644	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3645
3646	if [[ $localhost = nech ]]
3647	then
3648	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3649	else
3650	if [[ "$LOGNAME" = b323013 ]]
3651	then
3652	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3653	else
3654	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3655	fi
3656	fi
3657
3658	else
3659
3660	# TRANSFER INNERHALB DIESES JOBS
3661	transfer_failed=false
3662	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3663	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3664	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3665	[[ $? != 0 ]] && transfer_failed=true
3666
3667	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3668	# LOKALER MASCHINE ANLEGEN
3669	if [[ $transfer_failed = true ]]
3670	then
3671	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3672	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3673
3674	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3675	# ANLEGEN.
3676	eval local_catalog=${pathout[$i]}
3677	if [[ ! -d $local_catalog ]]
3678	then
3679	printf " *** local directory does not exist. Trying to create:\n"
3680	printf " $local_catalog \n"
3681	mkdir -p $local_catalog
3682	fi
3683	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3684	transfer_problems=true
3685	fi
3686	fi
3687	else
3688
3689	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3690	actionout[$i]=""
3691	fi
3692	fi
3693
3694
3695	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3696	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3697	# REMOTE-RECHNUNGEN
3698	if [[ "${actionout[$i]}" = tra ]]
3699	then
3700	if [[ $localhost != $fromhost ]]
3701	then
3702	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3703	then
3704
3705	# TRANSFER IN EIGENSTAENDIGEM JOB
3706	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3707	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3708	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3709	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3710
3711	echo "set -x" > transfer_${localout[$i]}
3712	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3713
3714	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3715	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3716	printf "\n or higher cycle\n"
3717	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3718
3719	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3720
3721	if [[ $localhost = nech ]]
3722	then
3723	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3724	else
3725	if [[ $LOGNAME = b323013 ]]
3726	then
3727	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3728	else
3729	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3730	fi
3731	fi
3732
3733	else
3734
3735	# TRANSFER INNERHALB DIESES JOBS
3736	transfer_failed=false
3737	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3738	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3739	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3740	[[ $? != 0 ]] && transfer_failed=true
3741
3742	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3743	# LOKALER MASCHINE ANLEGEN
3744	if [[ $transfer_failed = true ]]
3745	then
3746	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3747	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3748
3749	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3750	# ANLEGEN
3751	eval local_catalog=${pathout[$i]}
3752	if [[ ! -d $local_catalog ]]
3753	then
3754	printf " *** local directory does not exist. Trying to create:\n"
3755	printf " $local_catalog \n"
3756	mkdir -p $local_catalog
3757	fi
3758
3759	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3760	transfer_problems=true
3761	fi
3762	fi
3763	else
3764
3765	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3766	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3767	actionout[$i]=a
3768	fi
3769	fi
3770
3771
3772	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3773	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3774	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3775	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3776	if [[ "${actionout[$i]}" = fl ]]
3777	then
3778	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3779	chmod g+rx $tmp_data_catalog
3780	if [[ $files_for_pes = false ]]
3781	then
3782	printf "\n >>> OUTPUT: ${localout[$i]} to"
3783	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3784	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3785	else
3786	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3787	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3788	mkdir $tmp_data_catalog/${frelout[$i]}
3789	cd ${localout[$i]}
3790	for file in $(ls *)
3791	do
3792	ln -f $file $tmp_data_catalog/${frelout[$i]}
3793	done
3794	cd $TEMPDIR
3795	fi
3796
3797
3798	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3799	if [[ $store_on_archive_system = true ]]
3800	then
3801
3802	if [[ $archive_system = asterix ]]
3803	then
3804	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3805	if [[ $files_for_pes = false ]]
3806	then
3807	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3808	else
3809	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3810	fi
3811	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3812	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3813	echo "then" >> archive_${frelout[$i]}
3814	echo " do_stageout=false" >> archive_${frelout[$i]}
3815	echo "else" >> archive_${frelout[$i]}
3816	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3817	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3818	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3819	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3820	if [[ $files_for_pes = false ]]
3821	then
3822	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3823	else
3824	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3825	fi
3826	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3827	echo "fi" >> archive_${frelout[$i]}
3828	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3829	elif [[ $archive_system = DMF ]]
3830	then
3831	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3832	if [[ $files_for_pes = false ]]
3833	then
3834	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3835	locat=DMF
3836	exit
3837	else
3838	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3839	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3840	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3841	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3842	fi
3843	elif [[ $archive_system = tivoli ]]
3844	then
3845	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3846	if [[ $files_for_pes = false ]]
3847	then
3848	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3849	echo "set -x" >> archive_${frelout[$i]}
3850	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3851	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3852	else
3853
3854	echo "set -x" >> archive_${frelout[$i]}
3855	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3856	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3857	cd $tmp_data_catalog
3858	all_files=`ls -1 ${frelout[$i]}/*`
3859	cd - > /dev/null
3860	(( inode = 0 ))
3861	(( tp1 = tasks_per_node + 1 ))
3862	while (( inode < nodes ))
3863	do
3864	# echo "*** all_files = \"$all_files\" "
3865	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3866	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3867	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3868	# echo "*** files = \"$files\" "
3869	# echo "*** all_files = \"$all_files\" "
3870	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3871	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3872	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3873	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3874	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3875	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3876	(( inode = inode + 1 ))
3877	done
3878	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3879	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3880	fi
3881	elif [[ $archive_system = ut ]]
3882	then
3883	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3884	if [[ $files_for_pes = false ]]
3885	then
3886	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3887	echo "set -x" >> archive_${frelout[$i]}
3888	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3889	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3890	else
3891
3892	echo "set -x" >> archive_${frelout[$i]}
3893	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3894	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3895	cd $tmp_data_catalog
3896	all_files=`ls -1 ${frelout[$i]}/*`
3897	cd - > /dev/null
3898	(( inode = 0 ))
3899	(( tp1 = tasks_per_node + 1 ))
3900	while (( inode < nodes ))
3901	do
3902	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3903	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3904	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3905	(( inode = inode + 1 ))
3906	done
3907	fi
3908	elif [[ $archive_system = none ]]
3909	then
3910	printf " +++ archiving on $localhost not available!\n"
3911	fi
3912
3913	if [[ $archive_system != none ]]
3914	then
3915	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3916	then
3917	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3918	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3919	elif [[ $localhost = nech ]]
3920	then
3921	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3922	fi
3923	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3924	fi
3925	else
3926	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3927	fi
3928
3929
3930	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3931	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3932	if [[ $files_for_pes = false ]]
3933	then
3934	cat /dev/null > ${pathout[$i]}
3935	else
3936	mkdir -p ${pathout[$i]}
3937	fi
3938
3939	fi
3940
3941
3942	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3943	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3944	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3945	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3946	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3947	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3948	if [[ "${actionout[$i]}" = ar ]]
3949	then
3950	if [[ $files_for_pes = false ]]
3951	then
3952	printf "\n >>> OUTPUT: ${localout[$i]} to"
3953	printf "\n ${pathout[$i]}"
3954	printf "\n File will be copied to archive-system ($archive_system) !\n"
3955	else
3956	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3957	printf "\n ${pathout[$i]}"
3958	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3959	fi
3960	mv ${localout[$i]} ${frelout[$i]}
3961
3962	file_saved=false
3963
3964	if [[ $archive_system = asterix ]]
3965	then
3966	do_stageout=true
3967	(( stageout_anz = 0 ))
3968	while [[ $do_stageout = true ]]
3969	do
3970	if [[ $files_for_pes = false ]]
3971	then
3972	stageout ${frelout[$i]} > STAGE_OUTPUT
3973	else
3974	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3975	fi
3976	cat STAGE_OUTPUT
3977	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3978	then
3979	file_saved=true
3980	do_stageout=false
3981	else
3982	if [[ $files_for_pes = false ]]
3983	then
3984	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3985	else
3986	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3987	fi
3988	(( stageout_anz = stageout_anz + 1 ))
3989	if (( stageout_anz == 10 ))
3990	then
3991	printf "\n +++ stoped after 10 unsuccessful tries!"
3992	archive_save=false
3993	do_stageout=false
3994	else
3995	printf "\n *** new try to store on archive after 15 min:"
3996	sleep 900
3997	fi
3998	fi
3999	done
4000	elif [[ $archive_system = DMF ]]
4001	then
4002	if [[ $files_for_pes = false ]]
4003	then
4004	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4005	locat=DMF
4006	exit
4007	else
4008	rm -rf $ARCHIVE/${frelout[$i]}
4009	cp -r ${frelout[$i]} $ARCHIVE
4010	fi
4011	file_saved=true
4012	elif [[ $archive_system = tivoli ]]
4013	then
4014	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4015	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4016	# GELEGT WERDEN
4017	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4018	chmod g+rx $tmp_data_catalog
4019	if [[ $files_for_pes = false ]]
4020	then
4021	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4022	else
4023	mkdir $tmp_data_catalog/${frelout[$i]}
4024	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4025	fi
4026
4027	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4028	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4029	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4030	if [[ $files_for_pes = false ]]
4031	then
4032	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4033	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4034	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4035	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4036	else
4037	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4038	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4039	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4040	fi
4041
4042	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4043	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4044	file_saved=true
4045
4046	elif [[ $archive_system = ut ]]
4047	then
4048	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4049	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4050	# GELEGT WERDEN
4051	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4052	chmod g+rx $tmp_data_catalog
4053	if [[ $files_for_pes = false ]]
4054	then
4055	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4056	else
4057	mkdir $tmp_data_catalog/${frelout[$i]}
4058	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4059	fi
4060
4061	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4062	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4063	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4064	if [[ $files_for_pes = false ]]
4065	then
4066	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4067	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4068	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4069	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4070	else
4071	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4072	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4073	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4074	fi
4075
4076	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4077	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4078	file_saved=true
4079
4080	else
4081	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4082	archive_save=false
4083	fi
4084	if [[ $file_saved = true ]]
4085	then
4086	if [[ $files_for_pes = false ]]
4087	then
4088	cat /dev/null > ${pathout[$i]}
4089	else
4090	mkdir -p ${pathout[$i]}
4091	fi
4092	fi
4093	fi
4094
4095	# APPEND AUF LOKALER MASCHINE
4096	if [[ "${actionout[$i]}" = "a" ]]
4097	then
4098	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4099	cat ${localout[$i]} >> ${pathout[$i]}
4100	fi
4101
4102	# KOPIEREN AUF LOKALER MASCHINE
4103	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4104	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4105	then
4106
4107	# KOPIEREN AUF EINPROZESSORMASCHINE
4108	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4109	then
4110	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4111	if [[ $link_local_output = true ]]
4112	then
4113	printf " using ln -f\n"
4114	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4115	fi
4116	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4117	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4118	then
4119	if [[ $link_local_output = true ]]
4120	then
4121	printf " ln failed, using cp...\n"
4122	fi
4123	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4124	fi
4125	else
4126	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4127	if [[ $link_local_output = true ]]
4128	then
4129	printf " using ln -f\n"
4130	ln -f ${localout[$i]} ${pathout[$i]}
4131	fi
4132	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4133	if [[ ! -f "${pathout[$i]}" ]]
4134	then
4135	if [[ $link_local_output = true ]]
4136	then
4137	printf " ln failed, using cp...\n"
4138	fi
4139	cp ${localout[$i]} ${pathout[$i]}
4140	fi
4141	fi
4142
4143	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4144	then
4145
4146	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4147	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4148	# WIRD DANN KOPIERT
4149	# PER MOVE UMBENANNT WERDEN
4150	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4151	if [[ $link_local_output = true ]]
4152	then
4153	printf " using ln -f\n"
4154	mkdir ${pathout[$i]}
4155	cd ${localout[$i]}
4156	for file in $(ls *)
4157	do
4158	ln -f $file ${pathout[$i]}
4159	done
4160	cd $TEMPDIR
4161	fi
4162	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4163	if [[ ! -f "${pathout[$i]}/_0000" ]]
4164	then
4165	if [[ $link_local_output = true ]]
4166	then
4167	printf " ln failed for .../_0000, using cp...\n"
4168	fi
4169	cp -r ${localout[$i]} ${pathout[$i]}
4170	fi
4171
4172	fi
4173	fi
4174	done
4175	if (( i != 0 ))
4176	then
4177	if [[ $transfer_problems = true ]]
4178	then
4179	printf "\n$striche\n *** OUTPUT-files saved"
4180	printf "\n +++ WARNING: some data transfers failed! \n"
4181	else
4182	printf "\n$striche\n *** all OUTPUT-files saved \n"
4183	fi
4184	fi
4185
4186
4187	# EVENTUELL FOLGEJOB STARTEN
4188	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4189	if [[ -f CONTINUE_RUN ]]
4190	then
4191
4192	if [[ $archive_save = true ]]
4193	then
4194
4195	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4196	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4197	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4198	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4199	# HANDEN
4200	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4201	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4202	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4203	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4204	then
4205	mc=`echo $mc \| sed 's/#/f/g'`
4206	fi
4207
4208
4209	# JOB STARTEN
4210	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4211	echo " $mc"
4212	printf "\n$striche\n"
4213	if [[ $localhost != $fromhost ]]
4214	then
4215
4216	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4217	then
4218	echo "*** ssh will be used to initiate restart-runs!"
4219	echo " return_addres=\"$return_addres\" "
4220	echo " return_username=\"$return_username\" "
4221	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4222	then
4223	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4224	else
4225	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4226	fi
4227	else
4228	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4229	locat=restart; exit
4230	fi
4231
4232	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4233	# DER AKTUELLE JOB ENDET
4234	if [[ $queue = special1q ]]
4235	then
4236	sleep 120
4237	else
4238	sleep 30
4239	fi
4240
4241	else
4242
4243	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4244	# RUFEN WERDEN, AUSSER AUF lcfimm
4245	cd $LOCAL_PWD
4246	if [[ $localhost = lcfimm ]]
4247	then
4248	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4249	else
4250	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4251	fi
4252	cd - > /dev/null
4253	fi
4254	printf "\n$striche\n *** restart-run initiated \n"
4255
4256
4257	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4258	# GEHOLT WORDEN SIND, LOESCHEN
4259	(( i = 0 ))
4260	while (( i < iin ))
4261	do
4262	(( i = i + 1 ))
4263	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4264	then
4265	rm -r $tmp_data_catalog/${frelin[$i]}
4266	fi
4267	done
4268
4269	else
4270
4271	printf "\n +++ no restart-run possible, since errors occured"
4272	printf "\n during the archive process"
4273	fi
4274
4275	fi
4276
4277
4278
4279	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4280	if [[ "$email_notification" != "none" ]]
4281	then
4282
4283	if [[ $localhost != $fromhost ]]
4284	then
4285	if [[ -f CONTINUE_RUN ]]
4286	then
4287	echo "PALM restart run necessary" > email_text
4288	echo "description header of actual run:" >> email_text
4289	cat CONTINUE_RUN >> email_text
4290	echo "mrun-command to restart:" >> email_text
4291	echo "$mc" >> email_text
4292	else
4293	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4294	fi
4295	mail $email_notification < email_text
4296	printf "\n *** email notification sent to \"$email_notification\" "
4297	fi
4298	fi
4299
4300
4301
4302	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4303	cd $HOME
4304	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4305
4306	else
4307
4308
4309	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4310	# CHENDE AKTIONEN DURCHGEFUEHRT
4311
4312	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4313	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4314	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4315	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4316	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4317	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4318	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4319	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4320	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4321	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4322	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4323	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4324	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4325	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4326	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4327	if [[ $use_openmp = true ]]
4328	then
4329	mrun_com=${mrun_com}" -O $threads_per_task"
4330	fi
4331	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4332	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4333	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4334	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4335	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4336	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4337	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4338	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4339	if [[ $do_remote = true ]]
4340	then
4341	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4342	fi
4343
4344
4345	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4346	jobfile=jobfile.$RANDOM
4347
4348
4349	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4350	echo "mkdir $TEMPDIR" >> $jobfile
4351	echo "cd $TEMPDIR" >> $jobfile
4352
4353
4354	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4355	if [[ $do_trace = true ]]
4356	then
4357	echo "set -x" >> $jobfile
4358	else
4359	echo "set +vx" >> $jobfile
4360	fi
4361
4362
4363	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4364	# DATEI FUER DEN JOB
4365	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4366	then
4367
4368	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4369	# KOPIEREN
4370	if [[ $restart_run != true ]]
4371	then
4372	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4373	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4374	fi
4375
4376	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4377	echo "set -x" >> $jobfile
4378	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4379	echo "export SOURCES_COMPLETE=true" >> $jobfile
4380
4381	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4382	# ARBEITSVERZEICHNIS VERSCHIEBEN
4383	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4384	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4385	echo "execute_mrun=true" >> $jobfile
4386	echo " " >> $jobfile
4387
4388	else
4389
4390	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4391	# SOWIE GEGEBENENFALLS DES MAKEFILES
4392	if [[ $do_compile = true ]]
4393	then
4394
4395	source_catalog=SOURCES_FOR_RUN_$fname
4396
4397	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4398	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4399	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4400	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4401	echo "export SOURCES_COMPLETE=true" >> $jobfile
4402	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4403
4404	for filename in $source_list
4405	do
4406	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4407	echo "cat > $filename << \"%END%\"" >> $jobfile
4408	cat $source_catalog/$filename >> $jobfile
4409	echo " " >> $jobfile
4410	echo "%END%" >> $jobfile
4411	echo " " >> $jobfile
4412	done
4413
4414	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4415	echo "cat > Makefile << \"%END%\"" >> $jobfile
4416	cat $source_catalog/Makefile >> $jobfile
4417	echo " " >> $jobfile
4418	echo "%END%" >> $jobfile
4419	echo " " >> $jobfile
4420
4421	echo "cd - > /dev/null" >> $jobfile
4422
4423	fi
4424
4425
4426	# ABSPEICHERN DER KONFIGURATIONSDATEI
4427	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4428	echo "cat > $config_file << \"%END%\"" >> $jobfile
4429	cat $config_file >> $jobfile
4430	echo "%END%" >> $jobfile
4431	echo " " >> $jobfile
4432
4433
4434	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4435	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4436	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4437	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4438	echo "%END%" >> $jobfile
4439	echo "chmod u+x $mrun_script_name" >> $jobfile
4440	echo "execute_mrun=true" >> $jobfile
4441	echo " " >> $jobfile
4442
4443	fi
4444
4445
4446	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4447	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4448	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4449	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4450	if [[ $do_remote = true ]]
4451	then
4452	(( i = 0 ))
4453	while (( i < iin ))
4454	do
4455	(( i = i + 1 ))
4456	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4457	if [[ "${transin[$i]}" = job ]]
4458	then
4459	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4460	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4461	echo " " >> $jobfile
4462	echo "%END%" >> $jobfile
4463	else
4464	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4465	fi
4466
4467	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4468	echo "if [[ \$? = 1 ]]" >> $jobfile
4469	echo "then" >> $jobfile
4470	echo " echo \" \" " >> $jobfile
4471	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4472	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4473	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4474	echo " execute_mrun=false" >> $jobfile
4475	echo "fi" >> $jobfile
4476	done
4477	fi
4478
4479	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4480	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4481	echo "LOCAL_PWD=$working_directory" >> $jobfile
4482	echo "export LOCAL_PWD" >> $jobfile
4483
4484	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4485	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4486	echo "export LOCAL_MRUN_PATH" >> $jobfile
4487
4488	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4489	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4490	then
4491	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4492	fi
4493
4494	# MRUN AUF ZIELRECHNER AUFRUFEN
4495	echo "set -x" >> $jobfile
4496	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4497
4498	echo 'ls -al; echo `pwd`' >> $jobfile
4499	echo "cd \$HOME" >> $jobfile
4500	echo "rm -rf $TEMPDIR" >> $jobfile
4501
4502
4503
4504
4505	# JOB PER SUBJOB STARTEN
4506	if [[ $silent = false ]]
4507	then
4508	printf "\n "
4509	else
4510	printf "\n\n"
4511	fi
4512
4513	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4514	rm -rf $jobfile
4515
4516
4517	fi # ENDE REMOTE-TEIL
4518
4519
4520
4521	# ENDE DER PROZEDUR

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