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mrun @ 494

Last change on this file since 494 was 493, checked in by raasch, 14 years ago

New:
---
Output in NetCDF4-format. New d3par-parameter netcdf_data_format.

(check_open, check_parameters, close_file, data_output_2d, data_output_3d, header, modules, netcdf, parin)

Modules to be loaded for compilation (mbuild) or job execution (mrun)
can be given in the configuration file using variable modules. Example:

%modules ifort/11.0.069:netcdf lcsgih parallel

This method replaces the (undocumented) mpilib-variable.

WARNING: All fixed settings of modules in the scripts mbuild, mrun, and subjob
have been removed! Please set the modules variable appropriately in your
configuration file. (mbuild, mrun, subjob)

Changed:

Parameters netcdf_64bit and netcdf_64bit_3d have been removed. Use
netcdf_data_format = 2 for choosing the classic 64bit-offset format (this is
the default). The offset-format can not be set independently for the
3d-output-data any more.

Parameters netcdf_format_mask, netcdf_format_mask_av, and variables
nc_format_mask, format_parallel_io removed. They are replaced by the new
parameter netcdf_data_format. (check_open, close_file,
data_output_mask, header, init_masks, modules, parin)

Errors:

bugfix in trunk/UTIL/Makefile: forgot to compile for interpret_config

Bugfix: timeseries data have to be collected by PE0 (user_statistics)

Property svn:keywords set to Id Rev

File size: 170.2 KB

Line
1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 493 2010-03-01 08:30:24Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
193	# switches on archiving, archiving on SGI-ICE enabled
194	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
195	# adjustment for special1q
196	# 18/12/09 - Carolin- modification of archiving (permq)
197	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
198	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
199	# implemented
200	# 08/02/10 - Siggi - loading of modules now controlled via configuration
201	# file (modules)
202
203
204
205	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
206
207	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
208	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
209	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
210
211	AddFilenames=""
212	additional_conditions=""
213	add_source_path=""
214	afname=""
215	archive_save=true
216	archive_system=none
217	compiler_name=""
218	cond1=""
219	cond2=""
220	config_file=.mrun.config
221	coupled_dist=""
222	coupled_mode="mpi1"
223	cpp_opts=""
224	cpp_options=""
225	cpumax=0
226	cpurest=0
227	delete_temporary_catalog=true
228	do_batch=false
229	do_compile=true
230	do_remote=false
231	do_stagein=true
232	do_stageout=true
233	do_trace=false
234	email_notification="none"
235	exclude=""
236	executable=""
237	execution_error=false
238	fimm=false
239	fname=test
240	fromhost=""
241	global_revision=""
242	group_number=none
243	host=""
244	host_file=""
245	hp=""
246	ignore_archive_error=false
247	input_list=""
248	interpreted_config_file=""
249	job_catalog="~/job_queue"
250	job_on_file=""
251	keep_data_from_previous_run=false
252	link_local_input=false
253	link_local_output=false
254	localhost_realname=$(hostname)
255	local_compile=false
256	local_dvrserver_running=.FALSE.
257	locat=normal
258	mainprog=""
259	makefile=""
260	mc=$0
261	while [[ $(echo $mc \| grep -c "/") != 0 ]]
262	do
263	mc=`echo $mc \| cut -f2- -d"/"`
264	done
265	module_calls=""
266	mrun_script_name=$mc
267	netcdf_inc=""
268	netcdf_lib=""
269	netcdf_support=false
270	node_usage=default
271	numprocs=""
272	numprocs_atmos=0
273	numprocs_ocean=0
274	OOPT=""
275	openmp=false
276	output_list=""
277	package_list=""
278	punkte="..........................................................."
279	queue=none
280	read_from_config=""
281	restart_run=false
282	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
283	if [[ $return_addres = 130.75.105.158 ]]
284	then
285	return_addres=172.20.25.41
286	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
287	fi
288	return_password=""
289	return_username=$LOGNAME
290	remotecall=false
291	remote_username=""
292	run_coupled_model=false
293	run_mode=""
294	scirocco=false
295	store_on_archive_system=false
296	striche=" ----------------------------------------------------------------------------"
297	silent=false
298	source_list=""
299	source_path=SOURCE
300	tasks_per_node=""
301	threads_per_task=1
302	tmpcreate=false
303	tmp_data_catalog=""
304	transfer_problems=false
305	usern=$LOGNAME
306	use_openmp=false
307	working_directory=`pwd`
308	TOPT=""
309	XOPT=""
310	zeit=$( date \| cut -c 12-19 )
311
312	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
313	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
314
315	typeset -R30 calltime
316	typeset -L20 spalte1
317	typeset -L40 spalte2
318	typeset -L60 spalte3
319	typeset -L35 string1=`date`
320	typeset -L12 string2=$usern
321	typeset -L12 string3=$localhost_realname
322	typeset -L12 string4
323	typeset -L12 string5
324	typeset -L30 version="MRUN 2.0 Rev$Rev: 493 $"
325
326
327
328	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
329	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
330
331	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
332	# EXPORTIERT WERDEN
333	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
334	export group_number input_list memory numprocs output_list queue run_mode
335
336
337
338	# FEHLERBEHANDLUNG
339	# BEI EXIT:
340	trap 'rm -rf $working_directory/tmp_mrun
341	if [[ $locat != localhost ]]
342	then
343	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
344	# then
345	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
346	#MRUN-calls on $localhost
347	#
348	#date and time user localhost remotehost termination mrun-command
349	#--------------------------------------------------------------------------------------------------------------------
350	#%STATEND%
351	# chmod 666 ${mrun_path}/statistik/mrun_statistik
352	# fi
353	#
354	# # EINTRAG IN DIE STATISTIK-DATEI
355	# string4=$host
356	# string5=$locat
357	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
358	# then
359	# if [[ $do_batch = true ]]
360	# then
361	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
362	# else
363	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
364	# fi
365	# fi
366	echo " " > /dev/null
367	fi
368
369	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
370	then
371
372	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
373	(( i = 0 ))
374	while (( i < iec ))
375	do
376	(( i = i + 1 ))
377	printf "\n *** Execution of ERROR-command:\n"
378	printf " >>> ${err_command[$i]}\n"
379	eval ${err_command[$i]}
380	done
381	if [[ -n $interpreted_config_file ]] then
382	rm -rf $interpreted_config_file
383	fi
384	if [[ -n .mrun_environment ]] then
385	rm -rf .mrun_environment
386	fi
387	if [[ $tmpcreate = true ]]
388	then
389	printf "\n *** Contents of \"$TEMPDIR\":\n"
390	ls -al; cd
391	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
392	fi
393	if [[ "$dvrserver_id" != "" ]]
394	then
395	echo "+++ killing dvrserver_id=$dvrserver_id"
396	kill $dvrserver_id
397	fi
398	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
399	then
400	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
401	fi
402	printf "\n\n+++ MRUN killed \n\n"
403	elif [[ $locat != control_c ]]
404	then
405	printf "\n\n --> all actions finished\n\n"
406	printf " Bye, bye $usern !!\n\n"
407	fi' exit
408
409
410	# BEI TERMINAL-BREAK:
411	trap 'rm -rf $working_directory/tmp_mrun
412	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
413	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
414	then
415	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
416	fi
417	if [[ "$dvrserver_id" != "" ]]
418	then
419	echo "+++ killing dvrserver_id=$dvrserver_id"
420	kill $dvrserver_id
421	fi
422	printf "\n+++ MRUN killed by \"^C\" \n\n"
423	locat=control_c
424	exit
425	' 2
426
427
428	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
429	# BEEN SET
430	if [[ "$PALM_BIN" = "" ]]
431	then
432	printf "\n +++ environment variable PALM_BIN has not been set"
433	printf "\n please set it to the directory where the PALM scripts are located"
434	locat=palm_bin; exit
435	fi
436	export PATH=$PALM_BIN:$PATH
437
438
439
440	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
441	# FUER FOLGEJOBS BENOETIGT WIRD
442	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
443	do
444	case $option in
445	(a) afname=$OPTARG;;
446	(A) store_on_archive_system=true; mc="$mc -A";;
447	(b) do_batch=true; mc="$mc -b";;
448	(B) delete_temporary_catalog=false; mc="$mc -B";;
449	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
450	(C) restart_run=true; mc="$mc -C";;
451	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
452	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
453	(F) job_on_file="-D"; mc="$mc -F";;
454	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
455	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
456	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
457	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
458	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
459	(I) ignore_archive_error=true; mc="$mc -I";;
460	(k) keep_data_from_previous_run=true; mc="$mc -k";;
461	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
462	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
463	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
464	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
465	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
466	(O) use_openmp=true; mc="$mc -O";;
467	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
468	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
469	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
470	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
471	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
472	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
473	(S) read_from_config=false; mc="$mc -S";;
474	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
475	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
476	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
477	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
478	(v) silent=true; mc="$mc -v";;
479	(x) do_trace=true;set -x; mc="$mc -x";;
480	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
481	(y) ocean_file_appendix=true; mc="$mc -y";;
482	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
483	(\?) printf "\n +++ unknown option $OPTARG \n"
484	printf "\n --> type \"$0 ?\" for available options \n"
485	locat=parameter;exit;;
486	esac
487	done
488
489
490	# EVTL. POSITIONSPARAMETER EINLESEN
491	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
492	shift OPTIND-1
493
494
495	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
496	if [[ "$1" = "?" ]]
497	then
498	(printf "\n *** mrun can be called as follows:\n"
499	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
500	printf "\n Description of available options:\n"
501	printf "\n Option Description Default-Value"
502	printf "\n -a base name of input files equiv. -d"
503	printf "\n -A archiving when using file-attribute fl"
504	printf "\n -b batch-job on local machine ---"
505	printf "\n -B do not delete temporary directory at end ---"
506	printf "\n -c configuration file .mrun.config"
507	printf "\n -d base name of files attached to program test"
508	printf "\n -D preprocessor(cpp)-directives \"\" "
509	printf "\n -F create remote job file only ---"
510	printf "\n -h execution host $localhost_realname"
511	printf "\n -i INPUT control list \"\" "
512	printf "\n -I archiving errors of previous batch-jobs"
513	printf "\n will be ignored"
514	printf "\n -k keep data from previous run"
515	printf "\n -K additional conditions for controling"
516	printf "\n usage of conditional code and"
517	printf "\n env-variables in configuration file \"\" "
518	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
519	printf "\n -M Makefile name Makefile"
520	printf "\n -n node usage (shared/not_shared) depending on -h"
521	printf "\n -o OUTPUT control list \"\" "
522	printf "\n -O use OpenMP ---"
523	printf "\n -p software package list \"\" "
524	printf "\n -q queue \"$queue\" "
525	printf "\n -r run control list (combines -i -o) \"\" "
526	printf "\n -s filenames of routines to be compiled \"\" "
527	printf "\n must end with .f, .f90, .F, or .c !"
528	printf "\n use \"..\" for more than one file and wildcards"
529	printf "\n -s TEST compiles all files with w-permit"
530	printf "\n -S config file interpreted by shellscript ---"
531	printf "\n -t allowed cpu-time in seconds (batch) 0"
532	printf "\n -T tasks per node depending on -h"
533	printf "\n -u username on remote machine \"\" "
534	printf "\n -v no prompt for confirmation ---"
535	printf "\n -x tracing of mrun for debug purposes ---"
536	printf "\n -X # of processors (on parallel machines) 1"
537	printf "\n -y add appendix \"_O\" to all local output"
538	printf "\n files (ocean precursor runs followed by"
539	printf "\n coupled atmosphere-ocean runs) ---"
540	printf "\n -Y run coupled model, \"#1 #2\" with"
541	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
542	printf "\n "
543	printf "\n Possible values of positional parameter <modus>:"
544	printf "\n \"?\" - this outline \n\n") \| more
545	exit
546	elif [[ "$1" != "" ]]
547	then
548	printf "\n +++ positional parameter $1 unknown \n"
549	locat=parameter; exit
550	fi
551
552
553
554	# KURZE STARTMELDUNG
555	printf "\n*** $version "
556	printf "\n will be executed. Please wait ..."
557
558
559
560	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
561	if [[ ! -f $config_file ]]
562	then
563	printf "\n\n +++ configuration file: "
564	printf "\n $config_file"
565	printf "\n does not exist"
566	locat=connect; exit
567	fi
568
569
570	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
571	line=""
572	grep "%host_identifier" $config_file > tmp_mrun
573	while read line
574	do
575	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
576	then
577	HOSTNAME=`echo $line \| cut -d" " -s -f2`
578	host_identifier=`echo $line \| cut -d" " -s -f3`
579	if [[ $localhost_realname = $HOSTNAME ]]
580	then
581	localhost=$host_identifier
582	break
583	fi
584	fi
585	done < tmp_mrun
586
587	if [[ "$localhost" = "" ]]
588	then
589	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
590	printf "\n for local host \"$localhost_realname\"."
591	printf "\n Please add line"
592	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
593	printf "\n to the configuration file."
594	locat=localhost; exit
595	fi
596
597
598	# HOSTSPEZIFISCHE VARIABLEN SETZEN
599	case $localhost_realname in
600	(r1\|r2\|h01\|b01) archive_system=tivoli;;
601	(cs*) archive_system=ut;;
602	(fimm.bccs.uib.no) fimm=true;;
603	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
604	(scirocco) scirocco=true;;
605	esac
606
607
608
609	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
610	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
611	[[ "$afname" = "" ]] && afname=$fname
612
613
614	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
615	if [[ "$run_mode" != "" ]]
616	then
617	input_list="$input_list $run_mode"
618	output_list="$output_list $run_mode"
619	fi
620
621
622	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
623	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
624	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
625	# STARTET)
626	if [[ "$fromhost" = "" ]]
627	then
628	fromhost=$localhost
629	fi
630
631
632	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
633	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
634	then
635	source_list=TEST
636	local_compile=true
637	host=$localhost
638	fi
639
640
641	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
642	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
643	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
644	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
645	if [[ -n $host && "$host" != $localhost ]]
646	then
647	do_batch=true
648	do_remote=true
649	case $host in
650	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lcxt5m\|lck) true;;
651	(*) printf "\n"
652	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
653	printf "\n is not available"
654	locat=nqs; (( iec = 0 )); exit;;
655	esac
656	else
657	host=$localhost
658	fi
659
660
661	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
662	if [[ -n $additional_conditions ]]
663	then
664	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
665	cond1=`echo $additional_conditions \| cut -d" " -f1`
666	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
667	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
668	if [[ -n $dummy ]]
669	then
670	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
671	locat=options; exit
672	fi
673	fi
674
675
676	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
677	if [[ $run_coupled_model = true ]]
678	then
679
680	if [[ -n $coupled_dist ]]
681	then
682
683	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
684	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
685
686	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
687	then
688
689	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
690	printf "\n PEs (total) : $numprocs"
691	printf "\n PEs (atmosphere): $numprocs_atmos"
692	printf "\n PEs (ocean) : $numprocs_ocean"
693	locat=coupling; exit
694
695	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
696	# THIS SHOULD BE REMOVED IN FUTURE
697	elif (( $numprocs_ocean != $numprocs_atmos ))
698	then
699
700	printf "\n +++ currently only 1:1 topologies are supported"
701	printf "\n PEs (total) : $numprocs"
702	printf "\n PEs (atmosphere): $numprocs_atmos"
703	printf "\n PEs (ocean) : $numprocs_ocean"
704	(( numprocs_atmos = $numprocs / 2 ))
705	(( numprocs_ocean = $numprocs / 2 ))
706	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
707
708	fi
709
710	else
711
712	(( numprocs_ocean = $numprocs / 2 ))
713	(( numprocs_atmos = $numprocs / 2 ))
714
715	fi
716	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
717
718	# GET coupled_mode FROM THE CONFIG FILE
719	line=""
720	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
721	while read line
722	do
723	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
724	then
725	coupled_mode="mpi2"
726	fi
727	done < tmp_mrun
728
729	fi
730
731
732	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
733	# ARCHIVIERUNG FEHLGESCHLAGEN IST
734	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
735	then
736	if [[ $ignore_archive_error = false ]]
737	then
738	printf "\n +++ data archiving of previous run failed"
739	printf "\n see directory \~/job_queue on remote machine"
740	locat=archive; exit
741	else
742	printf "\n +++ warning: data archiving in a previous run failed"
743	printf "\n MRUN continues, trying to get backup copy"
744	fi
745	fi
746
747
748
749	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
750	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
751	if [[ "$read_from_config" = false ]]
752	then
753
754	[[ $silent = false ]] && printf "\n Reading the configuration file... "
755	while read zeile
756	do
757	[[ $silent = false ]] && printf "."
758
759
760	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
761	# ERSETZEN
762	eval zeile=\"$zeile\"
763
764
765	# INTERPRETATION DER ZEILE
766	if [[ "$(echo $zeile)" = "" ]]
767	then
768	# LEERZEILE, KEINE AKTION
769	continue
770
771	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
772	then
773
774	# ZEILE IST KOMMENTARZEILE
775	true
776
777	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
778	then
779
780	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
781	zeile=$(echo $zeile \| cut -c2-)
782	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
783	var=`echo $zeile \| cut -d" " -f1`
784	value=`echo $zeile \| cut -d" " -s -f2`
785	for_host=`echo $zeile \| cut -d" " -s -f3`
786	for_cond1=`echo $zeile \| cut -d" " -s -f4`
787	for_cond2=`echo $zeile \| cut -d" " -s -f5`
788
789	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
790	then
791
792	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
793	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
794	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
795
796
797	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
798	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
799	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
800	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
801	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
802	# KONFIGURATIONSDATEI
803	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
804	then
805	eval $var=\$value
806
807	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
808	if [[ $do_trace = true ]]
809	then
810	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
811	fi
812	fi
813
814	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
815	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
816	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
817	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
818	if [[ $var = host ]]
819	then
820	if [[ -n $host && "$host" != $localhost ]]
821	then
822	do_batch=true
823	do_remote=true
824	case $host in
825	(ibm\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
826	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
827	printf "\n is not available"
828	locat=nqs; exit;;
829	esac
830	else
831	host=$localhost
832	fi
833	fi
834
835	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
836	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
837	# DEN PROGRAMMEN BENOETIGT WERDEN
838	export $var
839	fi
840
841
842
843
844	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
845	then
846
847	# ZEILE DEFINIERT ERROR-KOMMANDO
848	(( iec = iec + 1 ))
849	zeile=$(echo $zeile \| cut -c4-)
850	err_command[$iec]="$zeile"
851
852	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
853	then
854
855	# ZEILE DEFINIERT INPUT-KOMMANDO
856	(( iic = iic + 1 ))
857	zeile=$(echo $zeile \| cut -c4-)
858	in_command[$iic]="$zeile"
859
860	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
861	then
862
863	# ZEILE DEFINIERT OUTPUT-KOMMANDO
864	(( ioc = ioc + 1 ))
865	zeile=$(echo $zeile \| cut -c4-)
866	out_command[$ioc]="$zeile"
867
868	else
869
870	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
871	# s2a: in/out - Feld
872	# s2b: loc - Feld (optional)
873	# s2c: tr/ar - Feld (optional)
874	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
875	s1=`echo $zeile \| cut -d" " -f1`
876	s2=`echo $zeile \| cut -d" " -s -f2`
877	s2a=$(echo $s2 \| cut -d":" -f1)
878	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
879	then
880	s2b=""
881	s2c=""
882	else
883	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
884	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
885	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
886	fi
887	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
888	s3=`echo $zeile \| cut -d" " -f3`
889	s4=`echo $zeile \| cut -d" " -s -f4`
890	s5=`echo $zeile \| cut -d" " -s -f5`
891	s6=`echo $zeile \| cut -d" " -s -f6`
892
893
894	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
895	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
896	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
897	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
898	# HANDEN SEIN MUSS (D.H. s2b = loc)
899	IFSALT="$IFS"; IFS="$IFS:"
900	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
901	then
902	found=false
903	for actual in $input_list
904	do
905	for formal in $s3
906	do
907	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
908	done
909	done
910	if [[ $found = true ]]
911	then
912	(( iin = iin + 1 ))
913	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
914	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
915	extin[$iin]=$s6
916	fi
917	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
918	then
919	found=false
920	for actual in $output_list
921	do
922	for formal in $s3
923	do
924	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
925	done
926	done
927	if [[ $found = true ]]
928	then
929	(( iout = iout + 1 ))
930	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
931	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
932	fi
933	elif [[ "$s2a" != in && "$s2a" != out ]]
934	then
935	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
936	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
937	locat=connect; exit
938	fi
939	IFS="$IFSALT"
940	fi
941	done < $config_file
942
943	else
944
945
946	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
947	[[ $silent = false ]] && printf "..."
948	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
949	export interpreted_config_file=.icf.$RANDOM
950
951
952
953	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
954	# VERFUEGUNG STELLEN
955	cat > .mrun_environment << %%END%%
956	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
957	config_file = '$config_file', do_remote = '$do_remote',
958	do_trace = '$do_trace', host = '$host',
959	input_list = '$input_list', icf = '$interpreted_config_file',
960	localhost = '$localhost', output_list = '$output_list' /
961
962	%%END%%
963
964	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
965	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
966	mrun_memory=$memory
967	mrun_group_number=$group_number
968	mrun_cpumax=$cpumax
969	mrun_numprocs=$numprocs
970
971	if [[ $localhost_realname = "sx-fep" ]]
972	then
973	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
974	else
975	interpret_config.x
976	fi
977	rm .mrun_environment
978
979
980	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
981	chmod u+x $interpreted_config_file
982	export PATH=$PATH:.
983	. $interpreted_config_file
984	rm $interpreted_config_file
985
986
987	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
988	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
989	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
990	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
991	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
992
993	fi
994
995
996	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
997	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
998	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
999	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1000	if [[ "$SOURCES_COMPLETE" = "" ]]
1001	then
1002
1003	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1004	# VEREINBART WURDE
1005	source_path=""
1006	line=""
1007	grep "%source_path" $config_file > tmp_mrun
1008	while read line
1009	do
1010	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1011	then
1012	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1013	then
1014	global_source_path=`echo $line \| cut -d" " -f2`
1015	fi
1016	fi
1017	done < tmp_mrun
1018
1019	line=""
1020	found=false
1021	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1022	while read line
1023	do
1024	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1025	then
1026	if [[ $found = true ]]
1027	then
1028	printf "\n\n +++ more than one source path found in configuration file"
1029	printf "\n for local host \"$localhost\" "
1030	locat=source_path; exit
1031	fi
1032	source_path=`echo $line \| cut -d" " -f2`
1033	found=true
1034	fi
1035	done < tmp_mrun
1036	rm tmp_mrun
1037
1038	if [[ "$source_path" = "" ]]
1039	then
1040	if [[ "$global_source_path" != "" ]]
1041	then
1042	source_path=$global_source_path
1043	else
1044	printf "\n\n +++ no source path found in configuration file"
1045	printf "\n for local host \"$localhost\" "
1046	locat=source_path; exit
1047	fi
1048	fi
1049	eval source_path=$source_path
1050
1051	if [[ ! -d $source_path ]]
1052	then
1053	printf "\n\n +++ source path \"$source_path\" on local host"
1054	printf "\n \"$localhost\" does not exist"
1055	locat=source_path; exit
1056	fi
1057
1058	fi
1059
1060
1061	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1062	# DURCH OPTION -G MITGETEILT)
1063	if [[ "$global_revision" = "" ]]
1064	then
1065	global_revision=`svnversion $source_path 2>/dev/null`
1066	global_revision="Rev: $global_revision"
1067	fi
1068
1069
1070	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1071	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1072	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1073	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1074	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1075	if [[ -n $host && "$host" != $localhost ]]
1076	then
1077	do_batch=true
1078	do_remote=true
1079	case $host in
1080	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lcxt5m\|lck) true;;
1081	(*) printf "\n"
1082	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1083	printf "\n is not available"
1084	locat=nqs; (( iec = 0 )); exit;;
1085	esac
1086	else
1087	host=$localhost
1088	fi
1089
1090
1091	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1092	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1093	then
1094
1095	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1096	if [[ ! -n $numprocs ]]
1097	then
1098	printf "\n"
1099	printf "\n +++ option \"-K parallel\" requires additional specification"
1100	printf "\n of the number of processors to be used by"
1101	printf "\n mrun-option \"-X\" or by environment-variable"
1102	printf "\n \"numprocs\" in the configuration file"
1103	locat=numprocs; (( iec = 0 )); exit
1104	fi
1105
1106	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1107	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1108	# GESAMTPROZESSORANZAHL IST
1109	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1110	then
1111	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1112	(( ival = $tasks_per_node ))
1113	(( pes = numprocs ))
1114	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1115	# then
1116	# (( pes = pes - 1 ))
1117	# fi
1118	(( ii = pes / ival ))
1119	if (( pes - ii * ival > 0 ))
1120	then
1121	printf "\n"
1122	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1123	printf "\n divisor of the total number of processors (option \"-X\")"
1124	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1125	locat=tasks_per_node; (( iec = 0 )); exit
1126	fi
1127	fi
1128
1129	# IBMY HAT NUR EINEN KNOTEN
1130	if [[ $host = ibmy ]]
1131	then
1132	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1133	then
1134	printf "\n"
1135	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1136	printf "\n total number of processors (option \"-X\")"
1137	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1138	locat=tasks_per_node; (( iec = 0 )); exit
1139	fi
1140	fi
1141
1142	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1143	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1144	if [[ $use_openmp = true ]]
1145	then
1146	threads_per_task=$tasks_per_node
1147	tasks_per_node=1
1148	fi
1149
1150	# SETTINGS FOR SUBJOB-COMMAND
1151	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1152	then
1153	(( tp1 = tasks_per_node * threads_per_task ))
1154	TOPT="-T $tp1"
1155	else
1156	TOPT="-T $tasks_per_node"
1157	fi
1158	OOPT="-O $threads_per_task"
1159
1160	# GESAMTZAHL DER KNOTEN BESTIMMEN
1161	if [[ "$tasks_per_node" != "" ]]
1162	then
1163	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1164	fi
1165
1166	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1167	# SETZEN
1168	if [[ $node_usage = default ]]
1169	then
1170	if [[ $host = ibms ]]
1171	then
1172	node_usage=shared
1173	elif [[ $host = lctit ]]
1174	then
1175	node_usage=RAM64GB
1176	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1177	then
1178	node_usage=singlejob
1179	else
1180	node_usage=not_shared
1181	fi
1182	fi
1183
1184	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1185	then
1186	printf "\n"
1187	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1188	printf "\n \"shared\" or \"not_shared\""
1189	locat=tasks_per_node; (( iec = 0 )); exit
1190	fi
1191
1192	fi
1193
1194	# PRUEFEN, OB HOSTFILE EXISTIERT
1195	if [[ -n $hostfile ]]
1196	then
1197	if [[ ! -f $hostfile ]]
1198	then
1199	printf "\n"
1200	printf "\n +++ hostfile \"$hostfile\" does not exist"
1201	locat=hostfile; exit
1202	fi
1203	fi
1204
1205	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1206	if [[ $host = ibmy && $do_remote = false ]]
1207	then
1208	if [[ ! -f $HOME/.rhosts ]]
1209	then
1210	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1211	printf "\n\n *** file:"
1212	printf "\n $HOME/.rhosts"
1213	printf "\n was created\n"
1214	fi
1215	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1216	then
1217	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1218	printf "\n\n *** file:"
1219	printf "\n $HOME/.rhosts"
1220	printf "\n was extended by the name of the current host\n"
1221	fi
1222	fi
1223
1224
1225
1226	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1227	if [[ $queue = none ]]
1228	then
1229	case $host in
1230	(ibmb) if [[ $node_usage = shared ]]
1231	then
1232	queue=cshare
1233	else
1234	queue=csolo
1235	fi;;
1236	(ibmh) queue=no_class;;
1237	(ibmy) queue=parallel;;
1238	(lckyoto) queue=ph;;
1239	(lcsgib) queue=bigq;;
1240	(lcsgih) queue=bigq;;
1241	(lctit) queue=RAM64GB;;
1242	(nech) queue=none;;
1243	(necriam) queue=SP;;
1244	(unics) queue=unics;;
1245	esac
1246	fi
1247
1248
1249	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1250	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1251	# ERMITTELN
1252	(( i = 0 ))
1253	while (( i < iin ))
1254	do
1255	(( i = i + 1 ))
1256	(( maxcycle = 0 ))
1257
1258	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1259	if [[ "${actionin[$i]}" = di ]]
1260	then
1261	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1262	# REM-MASCHINE AUSWERTEN
1263	eval filename=${pathin[$i]}/${endin[$i]}
1264	else
1265	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1266	# REM-MASCHINE AUSWERTEN
1267	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1268	fi
1269
1270	# PRUEFEN AUF VORHANDENSEIN
1271	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1272	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1273	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1274	then
1275	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1276	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1277	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1278	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1279	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1280	if [[ "${transin[$i]}" != "locopt" ]]
1281	then
1282	printf "\n\n +++ INPUT-file: "
1283	if [[ "${extin[$i]}" = "" ]]
1284	then
1285	printf "\n $filename"
1286	else
1287	printf "\n $filename.${extin[$i]}"
1288	fi
1289	printf "\n does not exist\n"
1290	locat=input; exit
1291	else
1292	transin[$i]="unavailable"
1293	fi
1294	else
1295
1296	# ZYKLUSNUMMER FESTSTELLEN
1297	ls -1 -d $filename > filelist 2>/dev/null
1298	ls -1 -d $filename.* >> filelist 2>/dev/null
1299	while read zeile
1300	do
1301	cycle=$(print $zeile \| cut -f2 -d".")
1302	if [[ "$cycle" = "$zeile" ]]
1303	then
1304	(( icycle = 0 ))
1305	elif [[ "$cycle" = "${extin[$i]}" ]]
1306	then
1307	(( icycle = 0 ))
1308	else
1309	(( icycle = $cycle ))
1310	fi
1311	if (( icycle > maxcycle ))
1312	then
1313	(( maxcycle = icycle ))
1314	file_to_be_used=$zeile
1315	fi
1316	done <filelist
1317	rm filelist
1318
1319	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1320	if (( maxcycle > 0 ))
1321	then
1322	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1323	then
1324	filename=${filename}.$maxcycle.${extin[$i]}
1325	else
1326	filename=${filename}.$maxcycle
1327	fi
1328	else
1329	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1330	then
1331	filename=${filename}.${extin[$i]}
1332	fi
1333	fi
1334
1335	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1336	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1337	absnamein[$i]=$filename
1338	if (( maxcycle > 0 ))
1339	then
1340	if [[ "${actionin[$i]}" = di ]]
1341	then
1342	frelin[$i]=${endin[$i]}.$maxcycle
1343	else
1344	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1345	fi
1346	else
1347	if [[ "${actionin[$i]}" = di ]]
1348	then
1349	frelin[$i]=${endin[$i]}
1350	else
1351	frelin[$i]=${afname}${endin[$i]}
1352	fi
1353	fi
1354
1355	fi
1356	done
1357
1358
1359	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1360	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1361	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1362	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1363	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1364	(( i = 0 ))
1365	while (( i < iout ))
1366	do
1367	(( i = i + 1 ))
1368	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1369	then
1370	if [[ "${actionout[$i]}" = tr ]]
1371	then
1372	actionout[$i]=""
1373	elif [[ "${actionout[$i]}" = trpe ]]
1374	then
1375	actionout[$i]=pe
1376	elif [[ "${actionout[$i]}" = tra ]]
1377	then
1378	actionout[$i]=a
1379	fi
1380	(( maxcycle = 0 ))
1381	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1382	eval catalogname=${pathout[$i]}
1383	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1384	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1385	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1386	then
1387
1388	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1389	if cat /dev/null > $filename
1390	then
1391	rm $filename
1392	else
1393
1394	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1395	if [[ ! -d $catalogname ]]
1396	then
1397	if mkdir -p $catalogname
1398	then
1399	printf "\n\n *** directory:"
1400	printf "\n $catalogname"
1401	printf "\n was created\n"
1402	else
1403	printf "\n\n +++ OUTPUT-file:"
1404	printf "\n $filename"
1405	printf "\n cannot be created, because directory does not exist"
1406	printf "\n and cannot be created either"
1407	printf "\n"
1408	locat=output ; exit
1409	fi 2>/dev/null
1410	else
1411	printf "\n\n +++ OUTPUT-file:"
1412	printf "\n $filename"
1413	printf "\n cannot be created, although directory exists"
1414	printf "\n"
1415	locat=output ; exit
1416	fi
1417	fi 2>/dev/null
1418	else
1419
1420	# ZYKLUSNUMMER FESTSTELLEN
1421	ls -1 -d $filename > filelist 2>/dev/null
1422	ls -1 -d $filename.* >> filelist 2>/dev/null
1423	while read zeile
1424	do
1425	cycle=$(print $zeile \| cut -f2 -d".")
1426	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1427	then
1428	(( icycle = 1 ))
1429	else
1430	(( icycle = $cycle + 1 ))
1431	fi
1432	if (( icycle > maxcycle ))
1433	then
1434	(( maxcycle = icycle ))
1435	fi
1436	done <filelist
1437	rm filelist
1438	fi
1439
1440	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1441	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1442	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1443	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1444	if [[ "${actionout[$i]}" != a ]]
1445	then
1446	if (( maxcycle > 0 ))
1447	then
1448	filename=${filename}.$maxcycle
1449	if cat /dev/null > $filename
1450	then
1451	rm $filename
1452	else
1453	printf "\n +++ OUTPUT-file:"
1454	printf "\n $filename"
1455	printf "\n cannot be created"
1456	locat=output ; exit
1457	fi
1458	fi
1459	else
1460	(( maxcycle = maxcycle - 1 ))
1461	if (( maxcycle > 0 ))
1462	then
1463	filename=${filename}.$maxcycle
1464	fi
1465	fi
1466
1467	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1468	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1469	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1470	pathout[$i]=$filename
1471	if (( maxcycle > 0 ))
1472	then
1473	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1474	else
1475	frelout[$i]=${fname}${endout[$i]}
1476	fi
1477
1478	fi
1479	done
1480
1481
1482	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1483	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1484	then
1485	if [[ "$dvr_inc" = "" ]]
1486	then
1487	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1488	printf "\n This is required for the dvrp_graphics package.\n"
1489	locat=dvr; exit
1490	fi
1491	if [[ "$dvr_lib" = "" ]]
1492	then
1493	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1494	printf "\n This is required for the dvrp_graphics package.\n"
1495	locat=dvr; exit
1496	fi
1497	fi
1498
1499
1500	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1501	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1502	# UEBERSETZT ZU WERDEN)
1503	if [[ "$mainprog" = "" && "$executable" = "" ]]
1504	then
1505	printf "\n +++ neither main program nor executable defined"
1506	locat=source; exit
1507	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1508	then
1509	printf "\n +++ main program as well as executable defined"
1510	locat=source; exit
1511	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1512	then
1513	do_compile=false
1514	fi
1515
1516
1517	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1518	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1519	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1520	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1521	then
1522	rm -rf SOURCES_FOR_RUN_$fname
1523	mkdir SOURCES_FOR_RUN_$fname
1524	fi
1525
1526
1527	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1528	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1529	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1530	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1531	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1532	then
1533
1534	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1535	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1536
1537
1538	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1539	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1540	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1541	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1542	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1543	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1544	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1545	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1546	# GESAMMELT
1547	if [[ "$source_list" = WRITE_PERMIT ]]
1548	then
1549
1550	source_list=""
1551	cd $source_path
1552
1553
1554	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1555	Names=$(ls -1 *.f90 2>&1)
1556	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1557	Names=$(ls -1 *.F90 2>&1)
1558	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1559	Names=$(ls -1 *.F 2>&1)
1560	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1561	Names=$(ls -1 *.f 2>&1)
1562	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1563	Names=$(ls -1 *.c 2>&1)
1564	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1565
1566
1567	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1568	for dateiname in $Filenames
1569	do
1570	if [[ -w $dateiname ]]
1571	then
1572	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1573	then
1574	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1575	source_list=$source_list"$dateiname "
1576	fi
1577	fi
1578	done
1579
1580	cd - > /dev/null
1581
1582
1583	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1584	then
1585
1586	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1587	source_list=""
1588	cd $source_path
1589
1590
1591	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1592	if [[ ! -d .svn ]]
1593	then
1594	printf "\n\n +++ source directory"
1595	printf "\n \"$source_path\" "
1596	printf "\n is not under control of \"subversion\"."
1597	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1598	fi
1599
1600
1601	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1602	Filenames=""
1603	svn status > tmp_mrun
1604	while read line
1605	do
1606	firstc=`echo $line \| cut -c1`
1607	if [[ $firstc = M \|\| $firstc = "?" ]]
1608	then
1609	Name=`echo "$line" \| cut -c8-`
1610	extension=`echo $Name \| cut -d. -f2`
1611	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1612	then
1613	Filenames="$Filenames "$Name
1614	fi
1615	fi
1616	done < tmp_mrun
1617
1618
1619	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1620	for dateiname in $Filenames
1621	do
1622	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1623	source_list=$source_list"$dateiname "
1624	done
1625
1626	cd - > /dev/null
1627
1628
1629	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1630	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1631	# VORHANDEN
1632	elif [[ "$source_list" != "" && $restart_run != true ]]
1633	then
1634
1635	cd $source_path
1636
1637	for filename in $source_list
1638	do
1639
1640	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1641	if [[ $(print $filename \| grep -c "/") != 0 ]]
1642	then
1643	printf "\n +++ source code file: $filename"
1644	printf "\n must not contain (\"/\") "
1645	locat=source; exit
1646	fi
1647
1648	if [[ ! -f $filename ]]
1649	then
1650	printf "\n +++ source code file: $filename"
1651	printf "\n does not exist"
1652	locat=source; exit
1653	else
1654	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1655	fi
1656
1657	done
1658
1659	cd - > /dev/null
1660
1661	fi
1662
1663
1664	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1665	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1666	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1667	if [[ $restart_run != true ]]
1668	then
1669
1670	if [[ ! -f "$source_path/$mainprog" ]]
1671	then
1672	printf "\n\n +++ main program: $mainprog"
1673	printf "\n does not exist in source directory"
1674	printf "\n \"$source_path\"\n"
1675	locat=source; exit
1676	else
1677	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1678	then
1679	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1680	source_list=${mainprog}" $source_list"
1681	fi
1682	fi
1683	fi
1684
1685
1686	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1687	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1688	if [[ "$restart_run" != true ]]
1689	then
1690	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1691	if [[ ! -f $makefile ]]
1692	then
1693	printf "\n +++ file \"$makefile\" does not exist"
1694	locat=make; exit
1695	else
1696	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1697	fi
1698	fi
1699
1700
1701	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1702	if [[ $restart_run != true && "$add_source_path" != "" ]]
1703	then
1704
1705	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1706	if [[ ! -d $add_source_path ]]
1707	then
1708	printf "\n\n +++ WARNING: additional source code directory"
1709	printf "\n \"$add_source_path\" "
1710	printf "\n does not exist or is not a directory."
1711	printf "\n No source code will be used from this directory!\n"
1712	add_source_path=""
1713	sleep 3
1714	else
1715
1716	cd $add_source_path
1717	found=false
1718
1719	Names=$(ls -1 *.f90 2>&1)
1720	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1721	Names=$(ls -1 *.F90 2>&1)
1722	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1723	Names=$(ls -1 *.F 2>&1)
1724	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1725	Names=$(ls -1 *.f 2>&1)
1726	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1727	Names=$(ls -1 *.c 2>&1)
1728	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1729
1730	cd - > /dev/null
1731	cd SOURCES_FOR_RUN_$fname
1732
1733	# COPY MAKEFILE IF EXISTING
1734	if [[ -f $add_source_path/Makefile ]]
1735	then
1736	printf "\n\n *** user Makefile from directory"
1737	printf "\n \"$add_source_path\" is used \n"
1738	sleep 1
1739	cp $add_source_path/Makefile .
1740	fi
1741
1742	for dateiname in $AddFilenames
1743	do
1744	if [[ -f $dateiname ]]
1745	then
1746	printf "\n +++ source code file \"$dateiname\" found in additional"
1747	printf "\n source code directory \"$add_source_path\" "
1748	printf "\n but was also given with option \"-s\" which means that it should be taken"
1749	printf "\n from directory \"$source_path\"."
1750	locat=source; exit
1751	fi
1752
1753	cp $add_source_path/$dateiname .
1754	source_list="$source_list $dateiname"
1755
1756	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1757	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1758	then
1759	printf "\n\n +++ user file \"$dateiname\" "
1760	printf "\n is not listed in Makefile \n"
1761	locat=source; exit
1762	else
1763
1764	# Default User-Interface von der Liste entfernen, falls Datei
1765	# ein User-Interface enthaelt
1766	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1767	# then
1768	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1769	# then
1770	# rm -rf user_interface.f90
1771	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1772	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1773	# printf "\n since a user-interface is found in file"
1774	# printf "\n \"$add_source_path/$dateiname\" \n"
1775	# sleep 3
1776	# else
1777	if [[ $found = false ]]
1778	then
1779	found=true
1780	printf "\n\n *** following user file(s) added to the"
1781	printf " files to be translated:\n "
1782	fi
1783	printf "$dateiname "
1784	sleep 0.5
1785	fi
1786	done
1787	[[ $found = true ]] && printf "\n"
1788	cd - > /dev/null
1789	fi
1790	fi
1791
1792
1793	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1794	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1795	if [[ $restart_run != true && -n $package_list ]]
1796	then
1797
1798	cd $source_path
1799
1800	for package in $package_list
1801	do
1802
1803	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1804
1805	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1806	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1807	# LIEFERT
1808	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1809
1810
1811	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1812	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1813	for source_list_name in $package_source_list
1814	do
1815	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1816	then
1817
1818	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1819	ending=`echo $source_list_name \| cut -f2 -d.`
1820	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1821	then
1822	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1823	source_list="$source_list $source_list_name"
1824	fi
1825	fi
1826	done
1827	done
1828
1829	cd - > /dev/null
1830	fi
1831
1832
1833	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1834	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1835	# if [[ "$restart_run" != true ]]
1836	# then
1837	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1838	# if [[ ! -f $makefile ]]
1839	# then
1840	# printf "\n +++ file \"$makefile\" does not exist"
1841	# locat=make; exit
1842	# else
1843	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1844	# fi
1845	# fi
1846
1847	fi # do_compile=true
1848
1849
1850	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1851	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1852	if [[ $do_compile = true ]]
1853	then
1854
1855	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1856	# ZUSAMMENSETZEN
1857	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1858	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1859	then
1860	cpp_options="${cpp_options},-D__ibm=__ibm"
1861	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1862	then
1863	cpp_options="$cpp_options -D__nec"
1864	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1865	then
1866	cpp_options="$cpp_options -D__lc"
1867	else
1868	cpp_options="$cpp_options -D__$localhost"
1869	fi
1870
1871	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1872	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1873	then
1874	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1875	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1876	else
1877	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1878	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1879	fi
1880
1881	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1882	if [[ -n $package_list ]]
1883	then
1884	for package in $package_list
1885	do
1886	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1887	then
1888	if [[ $package != "dvrp_graphics+1PE" ]]
1889	then
1890	cpp_options="${cpp_options},-D__$package=__$package"
1891	else
1892	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1893	export use_seperate_pe_for_dvrp_output=true
1894	fi
1895	else
1896	if [[ $package != "dvrp_graphics+1PE" ]]
1897	then
1898	cpp_options="$cpp_options -D__$package"
1899	else
1900	cpp_options="$cpp_options -D__dvrp_graphics"
1901	export use_seperate_pe_for_dvrp_output=true
1902	fi
1903	fi
1904	done
1905	fi
1906
1907	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1908	if [[ -n $cpp_opts ]]
1909	then
1910	for popts in $cpp_opts
1911	do
1912	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1913	then
1914	cpp_options="${cpp_options},-D__$popts=__$popts"
1915	else
1916	cpp_options="$cpp_options -D__$popts"
1917	fi
1918	done
1919	fi
1920
1921	else
1922
1923
1924	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1925	if [[ $do_remote = false ]]
1926	then
1927	if [[ ! -f $executable ]]
1928	then
1929	printf "\n +++ executable file: $executable"
1930	printf "\n does not exist"
1931	locat=executable; exit
1932	fi
1933	fi
1934	fi
1935
1936
1937	# JOBMODUS FESTSTELLEN
1938	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1939	then
1940	jobmo=BATCH
1941	else
1942	jobmo=INTERACTIVE
1943	fi
1944
1945
1946	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1947	# DURCH BENUTZER ANDERWEITIG VEREINBART
1948	if [[ "$compiler_name" = "" ]]
1949	then
1950
1951	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1952	locat=compiler_name; exit
1953
1954	fi
1955
1956
1957	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1958	[[ $localhost = necriam ]] && compiler_name=mpif90
1959
1960
1961
1962	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1963	kennung=$RANDOM
1964	if [[ "$tmp_user_catalog" = "" ]]
1965	then
1966	if [[ $localhost = ibmh ]]
1967	then
1968	tmp_user_catalog=$SCRATCH
1969	elif [[ $localhost = nech ]]
1970	then
1971	tmp_user_catalog=$WRKSHR
1972	else
1973	tmp_user_catalog=/tmp
1974	fi
1975	fi
1976	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1977
1978
1979	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1980	# BESTIMMEN
1981	if [[ "$tmp_data_catalog" = "" ]]
1982	then
1983	if [[ $localhost = ibmb ]]
1984	then
1985	tmp_data_catalog=$WORK/mrun_restart_data
1986	elif [[ $localhost = nech ]]
1987	then
1988	tmp_data_catalog=$WRKSHR/mrun_restart_data
1989	else
1990	tmp_data_catalog=/tmp/mrun_restart_data
1991	fi
1992	fi
1993
1994
1995	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1996	# ERSETZEN
1997	if [[ $do_remote = false && $do_compile = true ]]
1998	then
1999	eval fopts=\"$fopts\"
2000	eval lopts=\"$lopts\"
2001	fi
2002
2003
2004
2005	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2006	fopts="$fopts $netcdf_inc $dvr_inc"
2007	lopts="$lopts $netcdf_lib $dvr_lib"
2008	ROPTS="$ropts"
2009	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lcxt5m \|\| $host = lck ) && -n $numprocs ]]
2010	then
2011	XOPT="-X $numprocs"
2012	fi
2013
2014
2015
2016	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2017	# GRAMM BENOETIGT
2018	done=false
2019	while [[ $done = false ]]
2020	do
2021	cputime=$cpumax
2022	if (( $cputime == 0 ))
2023	then
2024	if [[ $do_batch = true ]]
2025	then
2026	printf "\n +++ cpu-time is undefined"
2027	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2028	printf "\n >>> "
2029	read cputime 1>/dev/null 2>&1
2030	else
2031	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2032	fi
2033	else
2034	done=true
2035	fi
2036	cpumax=$cputime
2037	done
2038
2039	(( minuten = cputime / 60 ))
2040	(( sekunden = cputime - minuten * 60 ))
2041
2042
2043	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2044	if [[ $do_batch = true ]]
2045	then
2046	done=false
2047	while [[ $done = false ]]
2048	do
2049	if (( memory == 0 ))
2050	then
2051	printf "\n +++ memory demand is undefined"
2052	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2053	printf "\n >>> "
2054	read memory 1>/dev/null 2>&1
2055	else
2056	done=true
2057	fi
2058	done
2059	fi
2060
2061
2062	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2063	if [[ $do_remote = true && -z $remote_username ]]
2064	then
2065	while [[ -z $remote_username ]]
2066	do
2067	printf "\n +++ username on remote host \"$host\" is undefined"
2068	printf "\n >>> Please type username:"
2069	printf "\n >>> "
2070	read remote_username
2071	done
2072	mc="$mc -u$remote_username"
2073	fi
2074
2075
2076	# set module load command and export for subjob
2077	if [[ "$modules" != "" ]]
2078	then
2079	export module_calls="module load ${modules};"
2080	fi
2081
2082
2083	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2084	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2085	then
2086	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2087	then
2088	mpilib=mpt
2089	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2090	then
2091	mpilib=mvapich
2092	fi
2093	fi
2094
2095
2096
2097	###########################################################################
2098	# HEADER-AUSGABE
2099	###########################################################################
2100
2101
2102	calltime=$(date)
2103	printf "\n"
2104	# [[ $silent = false ]] && clear
2105	printf "#--------------------------------------------------------------# \n"
2106	printf "\| $version$calltime \| \n"
2107	printf "\| \| \n"
2108	spalte1="called on:"; spalte2=$localhost_realname
2109	printf "\| $spalte1$spalte2 \| \n"
2110	if [[ $local_compile = false ]]
2111	then
2112	if [[ $do_remote = true ]]
2113	then
2114	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2115	else
2116	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2117	fi
2118	else
2119	spalte1="compiling test only!"; spalte2=""
2120	fi
2121	printf "\| $spalte1$spalte2 \| \n"
2122	if [[ -n $numprocs ]]
2123	then
2124	spalte1="number of PEs:"; spalte2=$numprocs
2125	printf "\| $spalte1$spalte2 \| \n"
2126	fi
2127	if [[ -n $tasks_per_node ]]
2128	then
2129	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2130	printf "\| $spalte1$spalte2 \| \n"
2131	fi
2132	if [[ $threads_per_task != 1 ]]
2133	then
2134	spalte1="threads per task:"; spalte2="$threads_per_task"
2135	printf "\| $spalte1$spalte2 \| \n"
2136	fi
2137	printf "\| \| \n"
2138	if [[ $do_compile = true ]]
2139	then
2140	if [[ "$mopts" != "" ]]
2141	then
2142	spalte1="make options:"; spalte2=$mopts
2143	printf "\| $spalte1$spalte2 \| \n"
2144	zeile=$(echo "$mopts" \| cut -c41-)
2145	while [[ "$zeile" != "" ]]
2146	do
2147	spalte1=""
2148	spalte2=$zeile
2149	printf "\| $spalte1$spalte2 \| \n"
2150	zeile=$(echo "$zeile" \| cut -c41-)
2151	done
2152	fi
2153
2154	spalte1="cpp directives:"; spalte2=$cpp_options
2155	printf "\| $spalte1$spalte2 \| \n"
2156	zeile=$(echo "$cpp_options" \| cut -c41-)
2157	while [[ "$zeile" != "" ]]
2158	do
2159	spalte1=""
2160	spalte2=$zeile
2161	printf "\| $spalte1$spalte2 \| \n"
2162	zeile=$(echo "$zeile" \| cut -c41-)
2163	done
2164
2165	spalte1="compiler options:"; spalte2="$fopts"
2166	printf "\| $spalte1$spalte2 \| \n"
2167	zeile=$(echo "$fopts" \| cut -c41-)
2168	while [[ "$zeile" != "" ]]
2169	do
2170	spalte1=""
2171	spalte2=$zeile
2172	printf "\| $spalte1$spalte2 \| \n"
2173	zeile=$(echo "$zeile" \| cut -c41-)
2174	done
2175
2176	spalte1="linker options:"; spalte2=$lopts
2177	printf "\| $spalte1$spalte2 \| \n"
2178	zeile=$(echo "$lopts" \| cut -c41-)
2179	while [[ "$zeile" != "" ]]
2180	do
2181	spalte1=""
2182	spalte2=$zeile
2183	printf "\| $spalte1$spalte2 \| \n"
2184	zeile=$(echo "$zeile" \| cut -c41-)
2185	done
2186
2187	spalte1="modules to be load:"; spalte2=$modules
2188	printf "\| $spalte1$spalte2 \| \n"
2189	zeile=$(echo "$modules" \| cut -c41-)
2190	while [[ "$zeile" != "" ]]
2191	do
2192	spalte1=""
2193	spalte2=$zeile
2194	printf "\| $spalte1$spalte2 \| \n"
2195	zeile=$(echo "$zeile" \| cut -c41-)
2196	done
2197
2198	spalte1="main program":; spalte2=$mainprog
2199	printf "\| $spalte1$spalte2 \| \n"
2200	else
2201	spalte1=executable:; spalte2=$executable
2202	printf "\| $spalte1$spalte2 \| \n"
2203	fi
2204	printf "\| \| \n"
2205	spalte1="base name of files":; spalte2=$fname
2206	printf "\| $spalte1$spalte2 \| \n"
2207	if [[ $fname != $afname ]]
2208	then
2209	spalte1="base name of input files":; spalte2=$afname
2210	printf "\| $spalte1$spalte2 \| \n"
2211	fi
2212	spalte1="INPUT control list":; spalte2=$input_list
2213	printf "\| $spalte1$spalte2 \| \n"
2214	spalte1="OUTPUT control list":; spalte2=$output_list
2215	printf "\| $spalte1$spalte2 \| \n"
2216
2217	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2218	then
2219	spalte1="memory demand / PE":; spalte2="$memory MB"
2220	printf "\| $spalte1$spalte2 \| \n"
2221	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2222	printf "\| $spalte1$spalte2 \| \n"
2223	fi
2224
2225	if [[ $do_compile = true ]]
2226	then
2227	printf "\| \| \n"
2228	printf "\| Files to be compiled: \| \n"
2229	zeile=$source_list
2230	while [[ "$zeile" != "" ]]
2231	do
2232	spalte3=$zeile
2233	printf "\| $spalte3 \| \n"
2234	zeile=$(echo "$zeile" \| cut -c61-)
2235	done
2236	fi
2237	printf "#--------------------------------------------------------------#"
2238
2239
2240
2241	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2242	if [[ $do_trace = true ]]
2243	then
2244	(( i = 0 ))
2245	while (( i < iin ))
2246	do
2247	(( i = i + 1 ))
2248	if (( i == 1 ))
2249	then
2250	printf "\n\n >>> INPUT-file assignments:\n"
2251	fi
2252	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2253	done
2254	(( i = 0 ))
2255	while (( i < iout ))
2256	do
2257	(( i = i + 1 ))
2258	if (( i == 1 ))
2259	then
2260	printf "\n\n >>> OUTPUT-file assignments:\n"
2261	fi
2262	printf "\n ${localout[$i]} : ${pathout[$i]}"
2263	done
2264	(( i = 0 ))
2265	while (( i < iic ))
2266	do
2267	(( i = i + 1 ))
2268	if (( i == 1 ))
2269	then
2270	printf "\n\n >>> INPUT-commands:\n"
2271	fi
2272	printf "\n ${in_command[$i]}"
2273	done
2274	(( i = 0 ))
2275	while (( i < ioc ))
2276	do
2277	(( i = i + 1 ))
2278	if (( i == 1 ))
2279	then
2280	printf "\n\n >>> OUTPUT-commands:\n"
2281	fi
2282	printf "\n ${out_command[$i]}"
2283	done
2284	fi
2285
2286
2287	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2288	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2289	then
2290	antwort=dummy
2291	printf "\n\n"
2292	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2293	do
2294	printf " >>> everything o.k. (y/n) ? "
2295	read antwort
2296	done
2297	if [[ $antwort = n \|\| $antwort = N ]]
2298	then
2299	locat=user_abort; (( iec = 0 )); exit
2300	fi
2301	if [[ $do_batch = true ]]
2302	then
2303	printf " >>> batch-job will be created and submitted"
2304	else
2305	if [[ $local_compile = false ]]
2306	then
2307	printf " >>> MRUN will now continue to execute on this machine"
2308	else
2309	printf " >>> a test compilation will now be carried out on this machine"
2310	fi
2311	fi
2312	fi
2313
2314
2315
2316
2317	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2318	# CHENDE AKTIONEN DURCHGEFUEHRT
2319	if [[ $do_batch = false ]]
2320	then
2321
2322
2323	# TEMPORAEREN KATALOG ERZEUGEN
2324	mkdir -p $TEMPDIR
2325	chmod go+rx $TEMPDIR
2326	tmpcreate=true
2327
2328	# set striping on lustre file system
2329	# if [[ $localhost = lcsgih ]]
2330	# then
2331	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2332	# lfs getstripe $TEMPDIR
2333	# fi
2334
2335
2336	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2337	# TEMPORAERES VERZEICHNIS KOPIEREN
2338	if [[ $do_compile = true ]]
2339	then
2340
2341	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2342	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2343	if [[ $localhost = nech ]]
2344	then
2345	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2346	if mkdir -p $TEMPDIR_COMPILE
2347	then
2348	printf "\n *** \"$TEMPDIR_COMPILE\" "
2349	printf "\n is generated as temporary directory for cross compiling\n"
2350	else
2351	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2352	printf "\n needed for cross compilation failed"
2353	locat=compile
2354	exit
2355	fi
2356	else
2357	TEMPDIR_COMPILE=$TEMPDIR
2358	fi
2359
2360
2361	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2362	line=""
2363	grep "%depository_path" $config_file > tmp_mrun
2364	while read line
2365	do
2366	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2367	then
2368	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2369	then
2370	global_depository_path=`echo $line \| cut -d" " -s -f2`
2371	fi
2372	fi
2373	done < tmp_mrun
2374
2375	line=""
2376	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2377	while read line
2378	do
2379	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2380	then
2381	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2382	then
2383	local_depository_path=`echo $line \| cut -d" " -s -f2`
2384	fi
2385	fi
2386	done < tmp_mrun
2387
2388	if [[ "$local_depository_path" = "" ]]
2389	then
2390	if [[ "$global_depository_path" != "" ]]
2391	then
2392	local_depository_path=$global_depository_path
2393	else
2394	printf "\n\n +++ no depository path found in configuration file"
2395	printf "\n for local host \"$localhost\" "
2396	printf "\n please set \"\%depository_path\" in configuration file\n"
2397	locat=config_file; exit
2398	fi
2399	fi
2400	eval local_depository_path=$local_depository_path
2401	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2402	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2403
2404
2405	basename=`print $mainprog \| cut -f1 -d"."`
2406	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2407	if [[ ! -f $make_depository ]]
2408	then
2409	printf "\n"
2410	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2411	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2412	else
2413	cp $make_depository $TEMPDIR_COMPILE
2414	cd $TEMPDIR_COMPILE
2415	tar -xf $make_depository > /dev/null 2>&1
2416	cd - > /dev/null
2417	fi
2418
2419	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2420
2421	else
2422
2423	cp $executable ${TEMPDIR}/a.out
2424
2425	fi
2426
2427
2428	# WECHSEL IN TEMPORAEREN KATALOG
2429	cd $TEMPDIR
2430	printf "\n *** changed to temporary directory: $TEMPDIR"
2431
2432
2433	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2434	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2435	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2436	# ERMITTELN
2437	(( i = 0 ))
2438	while (( i < iout ))
2439	do
2440	(( i = i + 1 ))
2441	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2442	then
2443	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2444	else
2445	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2446	fi
2447	done
2448
2449
2450	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2451	if [[ $do_compile = true ]]
2452	then
2453
2454
2455	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2456	printf "\n\n\n *** compilation starts \n$striche\n"
2457	printf " *** compilation with make using following options:\n"
2458	printf " make depository: $make_depository"
2459	if [[ "$mopts" != "" ]]
2460	then
2461	printf " make options: $mopts\n"
2462	fi
2463	printf " compilername: $compiler_name\n"
2464	printf " compiler options: $fopts\n"
2465	printf " preprocessor directives: $cpp_options \n"
2466	printf " linker options: $lopts \n"
2467	if [[ "$modules" != "" ]]
2468	then
2469	printf " modules to be load: $modules \n"
2470	fi
2471	printf " source code files: $source_list \n"
2472
2473	if [[ $localhost = nech ]]
2474	then
2475	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2476	cp $TEMPDIR_COMPILE/a.out .
2477	[[ $? != 0 ]] && compile_error=true
2478	rm -rf $TEMPDIR_COMPILE
2479	elif [[ $localhost = ibmh ]]
2480	then
2481	printf " compiler is called via ssh on \"plogin1\" \n"
2482	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2483	[[ ! -f a.out ]] && compile_error=true
2484	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2485	elif [[ $localhost = lcsgib ]]
2486	then
2487	printf " compiler is called via ssh on \"bicegate\" \n"
2488	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2489	[[ ! -f a.out ]] && compile_error=true
2490	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2491	elif [[ $localhost = lcsgih ]]
2492	then
2493	printf " compiler is called via ssh on \"hicegate2\" \n"
2494	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2495	[[ ! -f a.out ]] && compile_error=true
2496	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2497	else
2498	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2499	[[ "$module_calls" != "" ]] && eval $module_calls
2500	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2501	fi
2502
2503	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2504	then
2505	printf "\n +++ error occured while compiling or linking"
2506	locat=compile
2507
2508	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2509	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2510	# then
2511	exit
2512	# else
2513	# locat=normal
2514	# fi
2515	else
2516	printf "$striche\n *** compilation finished \n"
2517	fi
2518	fi
2519
2520
2521	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2522	if [[ $local_compile = true ]]
2523	then
2524	cd $HOME
2525	rm -rf $TEMPDIR
2526	locat=local_compile; exit
2527	fi
2528
2529
2530	# BEREITSTELLEN DER INPUT-DATEIEN
2531	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2532	(( i = 0 ))
2533	while (( i < iin ))
2534	do
2535	(( i = i + 1 ))
2536	if (( i == 1 ))
2537	then
2538	printf "\n\n *** providing INPUT-files:\n$striche"
2539	fi
2540
2541
2542	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2543	if [[ "${transin[$i]}" = unavailable ]]
2544	then
2545	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2546	then
2547	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2548	printf "\n is not available!"
2549	else
2550	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2551	printf "\n is not available!"
2552	fi
2553	continue
2554	fi
2555
2556	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2557	files_for_pes=false; datentyp=file
2558	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2559	then
2560	files_for_pes=true; datentyp=directory
2561	actionin[$i]=""
2562	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2563	then
2564	actionin[$i]=""
2565	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2566	then
2567	files_for_pes=true; datentyp=directory
2568	actionin[$i]="ar"
2569	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2570	then
2571	actionin[$i]="ar"
2572	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2573	then
2574	files_for_pes=true; datentyp=directory
2575	actionin[$i]="fl"
2576	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2577	then
2578	actionin[$i]="fl"
2579	fi
2580
2581	if [[ $files_for_pes = true ]]
2582	then
2583	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2584	else
2585	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2586	fi
2587
2588	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2589	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2590	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2591	# SERVER ZU HOLEN
2592	if [[ "${actionin[$i]}" = fl ]]
2593	then
2594	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2595	if [[ $files_for_pes = false ]]
2596	then
2597	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2598	then
2599	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2600	got_tmp[$i]=true
2601	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2602	then
2603	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2604	printf "\n *** trying to use backup copy in \"$WORK\" "
2605	cp $WORK/${frelin[$i]} ${localin[$i]}
2606	else
2607	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2608	printf "\n or \"$tmp_data_catalog\" does not exist!"
2609	printf "\n *** trying to get copy from archive"
2610	actionin[$i]=ar
2611	fi
2612	else
2613	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2614	then
2615	mkdir ${localin[$i]}
2616	cd $tmp_data_catalog/${frelin[$i]}
2617	for file in $(ls *)
2618	do
2619	ln $file $TEMPDIR/${localin[$i]}
2620	done
2621	cd $TEMPDIR
2622	got_tmp[$i]=true
2623	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2624	then
2625	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2626	printf "\n *** trying to use backup copy in \"$WORK\" "
2627	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2628	else
2629	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2630	printf "\n or \"$tmp_data_catalog\" does not exist!"
2631	printf "\n *** trying to get copy from archive"
2632	actionin[$i]=ar
2633	fi
2634	fi
2635	fi
2636
2637
2638	# DATEI LIEGT AUF ARCHIV-SERVER
2639	if [[ "${actionin[$i]}" = ar ]]
2640	then
2641
2642	if [[ $files_for_pes = false ]]
2643	then
2644	printf "\n file will be restored from archive-system ($archive_system)!"
2645	else
2646	printf "\n directory will be restored from archive-system ($archive_system)!"
2647	fi
2648
2649	file_restored=false
2650
2651	if [[ $archive_system = asterix ]]
2652	then
2653	do_stagein=true
2654	(( stagein_anz = 0 ))
2655	while [[ $do_stagein = true ]]
2656	do
2657	if [[ $files_for_pes = false ]]
2658	then
2659	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2660	else
2661	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2662	fi
2663	cat STAGEIN_OUTPUT
2664	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2665	then
2666	file_restored=true
2667	do_stagein=false
2668	else
2669	(( stagein_anz = stagein_anz + 1 ))
2670	if (( stagein_anz == 10 ))
2671	then
2672	printf "\n +++ stagein stoped after 10 tries"
2673	locat=stage
2674	exit
2675	fi
2676	printf "\n +++ restoring from archive failed, trying again:"
2677	sleep 900
2678	fi
2679	done
2680	elif [[ $archive_system = DMF ]]
2681	then
2682	if [[ $files_for_pes = false ]]
2683	then
2684	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2685	locat=DMF
2686	exit
2687	else
2688	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2689	cp -r $ARCHIVE/${frelin[$i]} $PWD
2690	file_restored=true
2691	fi
2692	elif [[ $archive_system = tivoli ]]
2693	then
2694	if [[ $files_for_pes = false ]]
2695	then
2696	if [[ $localhost = lcsgih ]]
2697	then
2698	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2699	else
2700	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2701	fi
2702	else
2703	(( inode = 0 ))
2704	while (( inode < nodes ))
2705	do
2706	if [[ $localhost = lcsgih ]]
2707	then
2708	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2709	else
2710	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2711	fi
2712	(( inode = inode + 1 ))
2713	done
2714	fi
2715	file_restored=true
2716	elif [[ $archive_system = ut ]]
2717	then
2718	if [[ $files_for_pes = false ]]
2719	then
2720	cp $UT/${frelin[$i]} .
2721	else
2722	(( inode = 0 ))
2723	while (( inode < nodes ))
2724	do
2725	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2726	(( inode = inode + 1 ))
2727	done
2728	fi
2729	file_restored=true
2730	else
2731	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2732	locat=rearchive
2733	exit
2734	fi
2735
2736	if [[ $file_restored = true ]]
2737	then
2738
2739	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2740	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2741	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2742	if [[ $files_for_pes = false ]]
2743	then
2744	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2745	else
2746	mkdir $tmp_data_catalog/${frelin[$i]}
2747	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2748	fi
2749	got_tmp[$i]=true
2750
2751	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2752	mv ${frelin[$i]} ${localin[$i]}
2753
2754	fi
2755	fi
2756
2757
2758	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2759	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2760	then
2761
2762	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2763	then
2764
2765	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2766	printf "\n file will be provided for $numprocs processors"
2767	mkdir ${localin[$i]}
2768	ival=$numprocs
2769	(( ii = 0 ))
2770	while (( ii <= ival-1 ))
2771	do
2772	if (( ii < 10 ))
2773	then
2774	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2775	elif (( ii < 100 ))
2776	then
2777	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2778	elif (( ii < 1000 ))
2779	then
2780	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2781	else
2782	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2783	fi
2784	(( ii = ii + 1 ))
2785	done
2786
2787	else
2788
2789	if [[ $files_for_pes = true ]]
2790	then
2791
2792	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2793	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2794	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2795	# PER MOVE UMBENANNT WERDEN
2796	printf "\n providing $numprocs files for the respective processors"
2797	mkdir ${localin[$i]}
2798	if [[ $link_local_input = true ]]
2799	then
2800	printf " using ln -f\n"
2801	cd ${absnamein[$i]}
2802	for file in $(ls *)
2803	do
2804	ln -f $file ${localin[$i]}
2805	done
2806	cd $TEMPDIR
2807	fi
2808	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2809	if [[ ! -f "${localin[$i]}/_0000" ]]
2810	then
2811	if [[ $link_local_input = true ]]
2812	then
2813	printf " ln failed for .../_0000, using cp...\n"
2814	fi
2815	cp -r ${absnamein[$i]}/* ${localin[$i]}
2816	fi
2817
2818	else
2819	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2820	if [[ $link_local_input = true ]]
2821	then
2822	printf " using ln -f\n"
2823	ln -f ${absnamein[$i]} ${localin[$i]}
2824	fi
2825	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2826	if [[ ! -f "${localin[$i]}" ]]
2827	then
2828	if [[ $link_local_input = true ]]
2829	then
2830	printf " ln failed, using cp...\n"
2831	fi
2832	cp ${absnamein[$i]} ${localin[$i]}
2833	fi
2834	fi
2835	fi
2836	fi
2837
2838	done
2839	if (( i != 0 ))
2840	then
2841	printf "\n$striche\n *** all INPUT-files provided \n"
2842	fi
2843
2844
2845	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2846	(( i = 0 ))
2847	while (( i < iic ))
2848	do
2849	(( i = i + 1 ))
2850	if (( i == 1 ))
2851	then
2852	printf "\n\n *** execution of INPUT-commands:\n$striche"
2853	fi
2854	printf "\n >>> ${in_command[$i]}"
2855	eval ${in_command[$i]}
2856	if (( i == iic ))
2857	then
2858	printf "\n$striche\n"
2859	fi
2860	done
2861
2862
2863	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2864	cpurest=${cpumax}.
2865
2866
2867	# START DVR STREAMING SERVER
2868	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2869	then
2870	if [[ "$dvr_server" != "" ]]
2871	then
2872
2873	printf "\n\n *** preparing the dvr streaming server configuration file"
2874
2875	# Check, if a dvr server is already running
2876	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2877	if [[ "$running_dvrserver_id" != "" ]]
2878	then
2879
2880	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2881	printf "\n This server is used instead starting a new one!"
2882	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2883
2884	else
2885
2886	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2887	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2888	then
2889	cp ${PALM_BIN}/.dvrserver.config .
2890
2891	# Entering the BASEDIR, UID and GID into this file
2892	user_id=`id -u`
2893	group_id=`id -g`
2894	# & is needed as seperator, because TEMPDIR contains /
2895	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2896	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2897	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2898	mv .dvrserver.3 .dvrserver.config
2899	rm .dvrserver.1 .dvrserver.2
2900
2901	# Start dvr server in background, get his id and print on terminal
2902	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2903	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2904	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2905	local_dvrserver_running=.TRUE.
2906	else
2907	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2908	printf "\n \"$PALM_BIN\" "
2909	locat=dvr
2910	exit
2911	fi
2912
2913	fi
2914
2915	else
2916	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2917	fi
2918	fi
2919
2920
2921	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2922	# LESEN VON PALM)
2923	cat > ENVPAR << %%END%%
2924	&envpar run_identifier = '$fname', host = '$localhost',
2925	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2926	maximum_cpu_time_allowed = ${cpumax}.,
2927	revision = '$global_revision',
2928	local_dvrserver_running = $local_dvrserver_running /
2929
2930	%%END%%
2931
2932
2933	# PROGRAMMSTART
2934	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2935	PATH=$PATH:$TEMPDIR
2936
2937	# MPI debug option (argument checking, slows down execution due to increased latency)
2938	if [[ "$mpi_debug" = true ]]
2939	then
2940	export MPI_CHECK_ARGS=1
2941	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2942	fi
2943
2944	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2945	then
2946	if [[ "$ENVIRONMENT" = BATCH ]]
2947	then
2948	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2949	then
2950	printf "\n +++ debug is allowed in interactive mode only"
2951	locat=debug
2952	exit
2953	fi
2954	fi
2955	if [[ $localhost = decalpha ]]
2956	then
2957	dxladebug a.out
2958	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2959	then
2960
2961	# SETUP THE IBM MPI ENVIRONMENT
2962	export MP_SHARED_MEMORY=yes
2963	export AIXTHREADS_SCOPE=S
2964	export OMP_NUM_THREADS=$threads_per_task
2965	export AUTHSTATE=files
2966	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2967
2968	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2969	export MP_ADAPTER_USE=shared
2970	export MP_CPU_USE=multiple
2971	export MP_TIMEOUT=1200
2972
2973	unset MP_TASK_AFFINITY
2974
2975	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2976	#(( ii = 1 ))
2977	#while (( ii <= $numprocs ))
2978	#do
2979	# echo $localhost_realname >> hostfile
2980	# (( ii = ii + 1 ))
2981	#done
2982	#export MP_HOSTFILE=hostfile
2983
2984	if [[ "$LOADLBATCH" = yes ]]
2985	then
2986	totalview poe a.out $ROPTS
2987	else
2988	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2989	export TVDSVRLAUNCHCMD=ssh
2990	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2991	fi
2992	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2993	then
2994	# CURRENTLY NO DEBUGGER ON LCSGI
2995	if [[ $run_coupled_model = true ]]
2996	then
2997	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2998	locat=debug
2999	exit
3000	else
3001	echo "no_coupling" > runfile_atmos
3002	fi
3003	(( ii = $numprocs / $threads_per_task ))
3004	export OMP_NUM_THREADS=$threads_per_task
3005	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3006	if [[ $threads_per_task != 1 ]]
3007	then
3008	printf "\n threads per task: $threads_per_task"
3009	fi
3010	printf "\n\n"
3011	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3012	then
3013	# export MPI_LAUNCH_TIMEOUT=360
3014	if [[ "$totalview" = true ]]
3015	then
3016	printf "\n running totalview debugger"
3017	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
3018	else
3019	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3020	fi
3021	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3022	then
3023	# ulimit -s 300000 # A too large stack size causes problems
3024	# export MV2_NUM_PORTS=2
3025	# export MV2_CPU_MAPPING=0:1:2:3
3026	if [[ "$totalview" = true ]]
3027	then
3028	printf "\n running totalview debugger"
3029	mpiexec -tv ./a.out $ROPTS < runfile_atmos
3030	else
3031	mpiexec ./a.out $ROPTS < runfile_atmos
3032	fi
3033	fi
3034	else
3035	printf "\n +++ no debug available on \"$localhost\" "
3036	printf "\n or not implemented in mrun so far"
3037	locat=debug
3038	exit
3039	fi
3040	else
3041	if [[ -n $numprocs ]]
3042	then
3043	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3044	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3045	then
3046	# SETUP THE IBM MPI ENVIRONMENT
3047	if [[ $host != ibmh ]]
3048	then
3049	export MP_SHARED_MEMORY=yes
3050	export AIXTHREAD_SCOPE=S
3051	export OMP_NUM_THREADS=$threads_per_task
3052	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3053	export AUTHSTATE=files
3054	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3055	# export MP_PRINTENV=yes
3056
3057	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3058	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3059	export MP_WAIT_MODE=poll
3060	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3061	fi
3062	if [[ "$LOADLBATCH" = yes ]]
3063	then
3064	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3065	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3066	then
3067	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3068	else
3069	if [[ $run_coupled_model = false ]]
3070	then
3071	if [[ "$ocean_file_appendix" = true ]]
3072	then
3073	echo "precursor_ocean" > runfile_atmos
3074	else
3075	echo "precursor_atmos" > runfile_atmos
3076	fi
3077	else
3078	(( iia = $numprocs_atmos / $threads_per_task ))
3079	(( iio = $numprocs_ocean / $threads_per_task ))
3080	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3081	printf "\n using $coupled_mode coupling"
3082	printf "\n\n"
3083	echo "coupled_run $iia $iio" > runfile_atmos
3084	fi
3085	poe ./a.out $ROPTS < runfile_atmos
3086	fi
3087	else
3088	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3089	then
3090	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3091	elif [[ $localhost = ibmy ]]
3092	then
3093	if [[ -f $hostfile ]]
3094	then
3095	cp $hostfile hostfile
3096	else
3097	(( ii = 1 ))
3098	while (( ii <= $numprocs ))
3099	do
3100	echo $localhost_realname >> hostfile
3101	(( ii = ii + 1 ))
3102	done
3103	fi
3104	export MP_HOSTFILE=hostfile
3105	if [[ $run_coupled_model = false ]]
3106	then
3107	if [[ "$ocean_file_appendix" = true ]]
3108	then
3109	echo "precursor_ocean" > runfile_atmos
3110	else
3111	echo "precursor_atmos" > runfile_atmos
3112	fi
3113	else
3114	(( iia = $numprocs_atmos / $threads_per_task ))
3115	(( iio = $numprocs_ocean / $threads_per_task ))
3116	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3117	printf "\n using $coupled_mode coupling"
3118	printf "\n\n"
3119	echo "coupled_run $iia $iio" > runfile_atmos
3120	fi
3121	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3122
3123	else
3124	if [[ "$host_file" = "" ]]
3125	then
3126	printf "\n +++ no hostfile given in configuration file"
3127	locat=config_file
3128	exit
3129	else
3130	eval host_file=$host_file
3131	fi
3132	export MP_HOSTFILE=$host_file
3133	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3134	fi
3135	fi
3136	elif [[ $host = nech \|\| $host = necriam ]]
3137	then
3138	(( ii = nodes ))
3139	if [[ $ii = 1 ]]
3140	then
3141	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3142	export MPIPROGINF=YES
3143	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3144	echo "*** execution on single node with mpirun"
3145	mpirun -np $numprocs ./a.out $ROPTS
3146	else
3147	(( i = 0 ))
3148	while (( i < ii ))
3149	do
3150	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3151	(( i = i + 1 ))
3152	done
3153
3154	echo "#!/bin/sh" > mpi_exec_shell
3155	echo " " >> mpi_exec_shell
3156	echo "set -u" >> mpi_exec_shell
3157	echo "F_ERRCNT=0" >> mpi_exec_shell
3158	echo "MPIPROGINV=YES" >> mpi_exec_shell
3159	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3160	echo "cpurest=$cpurest" >> mpi_exec_shell
3161	echo "fname=$fname" >> mpi_exec_shell
3162	echo "localhost=$localhost" >> mpi_exec_shell
3163	echo "return_addres=$return_addres" >> mpi_exec_shell
3164	echo "return_username=$return_username" >> mpi_exec_shell
3165	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3166	echo "write_binary=$write_binary" >> mpi_exec_shell
3167	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3168	echo " " >> mpi_exec_shell
3169	echo "export F_ERRCNT" >> mpi_exec_shell
3170	echo "export MPIPROGINV" >> mpi_exec_shell
3171	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3172	echo "export cpurest" >> mpi_exec_shell
3173	echo "export fname" >> mpi_exec_shell
3174	echo "export localhost" >> mpi_exec_shell
3175	echo "export return_addres" >> mpi_exec_shell
3176	echo "export return_username" >> mpi_exec_shell
3177	echo "export tasks_per_node" >> mpi_exec_shell
3178	echo "export write_binary" >> mpi_exec_shell
3179	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3180	echo " " >> mpi_exec_shell
3181	echo "exec ./a.out" >> mpi_exec_shell
3182
3183	chmod u+x mpi_exec_shell
3184	export MPIPROGINF=YES
3185	mpirun -f multinode_config &
3186	wait
3187
3188	fi
3189	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3190	then
3191
3192	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3193	# DOES NOT EXIST
3194	if [[ $host != lcsgih && $host != lcsgib ]]
3195	then
3196	if [[ -f $hostfile ]]
3197	then
3198	cp $hostfile hostfile
3199	else
3200	(( ii = 1 ))
3201	while (( ii <= $numprocs / $threads_per_task ))
3202	do
3203	echo $localhost_realname >> hostfile
3204	(( ii = ii + 1 ))
3205	done
3206	fi
3207	eval zeile=\"`head -n $ii hostfile`\"
3208	printf "\n *** running on: $zeile"
3209	fi
3210
3211	(( ii = $numprocs / $threads_per_task ))
3212	export OMP_NUM_THREADS=$threads_per_task
3213	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3214	if [[ $threads_per_task != 1 ]]
3215	then
3216	# increase stack size to unlimited, because large runs
3217	# may abort otherwise
3218	ulimit -Ss unlimited
3219	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3220	fi
3221	if [[ $run_coupled_model = false ]]
3222	then
3223	if [[ "$ocean_file_appendix" = true ]]
3224	then
3225	echo "precursor_ocean" > runfile_atmos
3226	else
3227	echo "precursor_atmos" > runfile_atmos
3228	fi
3229	printf "\n\n"
3230	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3231	then
3232	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3233	then
3234	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3235	# export MPI_DSM_DISTRIBUTE=1
3236	# MPI_DSM_CPULIST: pin MPI processes to cores
3237	if [[ $use_openmp = false ]]
3238	then
3239	if [[ "$sgi_feature" = ice2 ]]
3240	then
3241	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3242	else
3243	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3244	fi
3245	fi
3246	# MPI_IB_RAILS: use both IB rails on ICE2
3247	export MPI_BUFS_PER_HOST=512
3248	export MPI_IB_RAILS=2
3249	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3250	export MPI_CONNECTIONS_THRESHOLD=8192
3251	echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3252	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3253
3254	# next is test for openmp usage
3255	# mpiexec -n $ii -pernode ./a.out $ROPTS < runfile_atmos
3256	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3257	then
3258	export MV2_NUM_PORTS=2
3259	# The default setting of MV2_CPU_MAPPING gives best results
3260	# export MV2_ENABLE_AFFINITY=1
3261	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3262	# if [[ "$sgi_feature" = ice2 ]]
3263	# then
3264	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3265	# else
3266	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3267	# fi
3268	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3269	if [[ $threads_per_task != 1 ]]
3270	then
3271	mpiexec -npernode 1 ./a.out $ROPTS < runfile_atmos
3272	else
3273	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3274	fi
3275	fi
3276	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3277	then
3278	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3279	else
3280	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3281	fi
3282	else
3283
3284	# currently there is no full MPI-2 support on ICE and XT4
3285	(( iia = $numprocs_atmos / $threads_per_task ))
3286	(( iio = $numprocs_ocean / $threads_per_task ))
3287	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3288	printf "\n using $coupled_mode coupling"
3289	printf "\n\n"
3290
3291	if [[ $coupled_mode = "mpi2" ]]
3292	then
3293	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3294	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3295	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3296	then
3297
3298	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3299	then
3300	# export MPI_LAUNCH_TIMEOUT=360
3301	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3302	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3303	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3304	then
3305	# ulimit -s 300000 # A too large stack size causes problems
3306	# export MV2_NUM_PORTS=2
3307	# export MV2_CPU_MAPPING=0:1:2:3
3308	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3309	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3310	fi
3311
3312	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3313	then
3314
3315	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3316	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3317
3318	else
3319	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3320	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3321	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3322	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3323	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3324	fi
3325	wait
3326
3327	else
3328
3329	echo "coupled_run $iia $iio" > runfile_atmos
3330	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3331	then
3332
3333	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3334	then
3335	# export MPI_LAUNCH_TIMEOUT=360
3336	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3337	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3338	then
3339	# ulimit -s 300000 # A too large stack size causes problems
3340	# export MV2_NUM_PORTS=2
3341	# export MV2_CPU_MAPPING=0:1:2:3
3342	mpiexec ./a.out $ROPTS < runfile_atmos
3343	fi
3344
3345	elif [[ $host = lcxt4 \|\| $host = lcxt5m ]]
3346	then
3347
3348	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3349
3350	elif [[ $host = lck ]]
3351	then
3352	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3353	fi
3354	wait
3355	fi
3356
3357	# if [[ $scirocco = true ]]
3358	# then
3359	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3360	# else
3361	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3362	# fi
3363	fi
3364	elif [[ $host = decalpha ]]
3365	then
3366	dmpirun -np $numprocs a.out $ROPTS
3367	elif [[ $host = lckyoto ]]
3368	then
3369	set -xv
3370	export P4_RSHCOMMAND=plesh
3371	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3372	if [[ "$ENVIRONMENT" = BATCH ]]
3373	then
3374	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3375	# for pgi mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3376	# for intel mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3377	else
3378	mpirun -np $numprocs ./a.out $ROPTS
3379	# for intel mpiruni_rsh -np $numprocs ./a.out $ROPTS
3380	fi
3381	set +xv
3382	elif [[ $host = lctit ]]
3383	then
3384	export runfile=runfile.$kennung
3385
3386	echo "cd $PWD" > $runfile
3387	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3388	echo "export cpurest=$cpurest" >> $runfile
3389	echo "export fname=$fname" >> $runfile
3390	echo "export localhost=$localhost" >> $runfile
3391	echo "export return_addres=$return_addres" >> $runfile
3392	echo "export return_username=$return_username" >> $runfile
3393	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3394	echo "export write_binary=$write_binary" >> $runfile
3395	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3396	echo "./a.out" >> $runfile
3397	chmod u+x $runfile
3398
3399	if [[ "$QUEUE" = interactive ]]
3400	then
3401	mpirun -np $numprocs a.out $ROPTS
3402	else
3403	(( mem_tsubame = $memory / 1024.0 ))
3404	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3405	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3406	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3407	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3408	fi
3409
3410	rm $runfile
3411	else
3412	mpprun -n $numprocs a.out $ROPTS
3413	fi
3414	[[ $? != 0 ]] && execution_error=true
3415
3416
3417	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3418	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3419	then
3420	apprentice
3421	fi
3422	else
3423	a.out $ROPTS
3424	fi
3425	fi
3426	if [[ $? != 0 \|\| $execution_error = true ]]
3427	then
3428
3429	# ABBRUCH BEI LAUFZEITFEHLER
3430	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3431	printf "\n +++ runtime error occured"
3432	locat=execution
3433	exit
3434	else
3435	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3436	printf "\n$striche\n *** execution finished \n"
3437
3438	# Stop the dvr streaming server and process the dvr output in order
3439	# to create dvrs- and html-files containing all streams
3440	if [[ "$dvrserver_id" != "" ]]
3441	then
3442	kill $dvrserver_id
3443	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3444
3445	# If there is a directory, data have been output by the
3446	# streaming server. Otherwise, user has chosen dvrp_output=local
3447	if [[ -d DATA_DVR ]]
3448	then
3449
3450	# Add the current dvr configuration file to the dvr output
3451	# directory
3452	cp .dvrserver.config DATA_DVR
3453
3454	# Process the dvr output (option -s for also generating
3455	# sequence mode data)
3456	process_dvr_output -d DATA_DVR -f $fname -s
3457
3458	else
3459
3460	# Process the local output
3461	process_dvr_output -l -d DATA_DVR -f $fname
3462
3463	fi
3464
3465	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3466	then
3467
3468	# Process dvr output generated in local mode (dvrp_output=local)
3469	process_dvr_output -l -d DATA_DVR -f $fname
3470
3471	fi
3472	fi
3473
3474
3475
3476	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3477	(( i = 0 ))
3478	while (( i < ioc ))
3479	do
3480	(( i = i + 1 ))
3481	if (( i == 1 ))
3482	then
3483	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3484	fi
3485	printf "\n >>> ${out_command[$i]}"
3486	eval ${out_command[$i]}
3487	if (( i == ioc ))
3488	then
3489	printf "\n$striche\n"
3490	fi
3491	done
3492
3493
3494	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3495	if [[ $do_trace = true ]]
3496	then
3497	printf "\n\n"
3498	ls -al
3499	fi
3500
3501
3502
3503	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3504	(( i = 0 ))
3505	while (( i < iout ))
3506	do
3507	(( i = i + 1 ))
3508	if (( i == 1 ))
3509	then
3510	printf "\n\n *** saving OUTPUT-files:\n$striche"
3511	fi
3512
3513	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3514	files_for_pes=false; filetyp=file
3515	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3516	then
3517	files_for_pes=true; filetyp=directory
3518	actionout[$i]=""
3519	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3520	then
3521	actionout[$i]=""
3522	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3523	then
3524	files_for_pes=true; filetyp=directory
3525	actionout[$i]="ar"
3526	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3527	then
3528	actionout[$i]="ar"
3529	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3530	then
3531	files_for_pes=true; filetyp=directory
3532	actionout[$i]="fl"
3533	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3534	then
3535	actionout[$i]="fl"
3536	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3537	then
3538	files_for_pes=true; filetyp=directory
3539	actionout[$i]="tr"
3540	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3541	then
3542	actionout[$i]="tr"
3543	fi
3544
3545	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3546	then
3547	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3548	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3549	then
3550	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3551	else
3552
3553
3554	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3555	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3556	# REMOTE-RECHNUNGEN
3557	if [[ "${actionout[$i]}" = tr ]]
3558	then
3559	if [[ $localhost != $fromhost ]]
3560	then
3561	if [[ $files_for_pes = false ]]
3562	then
3563	cps=""
3564	cst=""
3565	else
3566	cps=-c
3567	cst="/"
3568	fi
3569	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3570	then
3571
3572	# TRANSFER IN EIGENSTAENDIGEM JOB
3573	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3574	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3575	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3576	if [[ $files_for_pes = false ]]
3577	then
3578	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3579	else
3580	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3581	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3582	fi
3583
3584	echo "set -x" > transfer_${localout[$i]}
3585	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3586
3587	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3588	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3589	printf "\n or higher cycle\n"
3590	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3591
3592	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3593
3594	if [[ $localhost = nech ]]
3595	then
3596	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3597	else
3598	if [[ "$LOGNAME" = b323013 ]]
3599	then
3600	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3601	else
3602	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3603	fi
3604	fi
3605
3606	else
3607
3608	# TRANSFER INNERHALB DIESES JOBS
3609	transfer_failed=false
3610	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3611	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3612	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3613	[[ $? != 0 ]] && transfer_failed=true
3614
3615	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3616	# LOKALER MASCHINE ANLEGEN
3617	if [[ $transfer_failed = true ]]
3618	then
3619	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3620	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3621
3622	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3623	# ANLEGEN.
3624	eval local_catalog=${pathout[$i]}
3625	if [[ ! -d $local_catalog ]]
3626	then
3627	printf " *** local directory does not exist. Trying to create:\n"
3628	printf " $local_catalog \n"
3629	mkdir -p $local_catalog
3630	fi
3631	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3632	transfer_problems=true
3633	fi
3634	fi
3635	else
3636
3637	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3638	actionout[$i]=""
3639	fi
3640	fi
3641
3642
3643	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3644	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3645	# REMOTE-RECHNUNGEN
3646	if [[ "${actionout[$i]}" = tra ]]
3647	then
3648	if [[ $localhost != $fromhost ]]
3649	then
3650	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3651	then
3652
3653	# TRANSFER IN EIGENSTAENDIGEM JOB
3654	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3655	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3656	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3657	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3658
3659	echo "set -x" > transfer_${localout[$i]}
3660	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3661
3662	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3663	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3664	printf "\n or higher cycle\n"
3665	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3666
3667	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3668
3669	if [[ $localhost = nech ]]
3670	then
3671	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3672	else
3673	if [[ $LOGNAME = b323013 ]]
3674	then
3675	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3676	else
3677	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3678	fi
3679	fi
3680
3681	else
3682
3683	# TRANSFER INNERHALB DIESES JOBS
3684	transfer_failed=false
3685	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3686	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3687	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3688	[[ $? != 0 ]] && transfer_failed=true
3689
3690	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3691	# LOKALER MASCHINE ANLEGEN
3692	if [[ $transfer_failed = true ]]
3693	then
3694	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3695	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3696
3697	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3698	# ANLEGEN
3699	eval local_catalog=${pathout[$i]}
3700	if [[ ! -d $local_catalog ]]
3701	then
3702	printf " *** local directory does not exist. Trying to create:\n"
3703	printf " $local_catalog \n"
3704	mkdir -p $local_catalog
3705	fi
3706
3707	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3708	transfer_problems=true
3709	fi
3710	fi
3711	else
3712
3713	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3714	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3715	actionout[$i]=a
3716	fi
3717	fi
3718
3719
3720	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3721	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3722	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3723	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3724	if [[ "${actionout[$i]}" = fl ]]
3725	then
3726	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3727	chmod g+rx $tmp_data_catalog
3728	if [[ $files_for_pes = false ]]
3729	then
3730	printf "\n >>> OUTPUT: ${localout[$i]} to"
3731	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3732	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3733	else
3734	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3735	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3736	mkdir $tmp_data_catalog/${frelout[$i]}
3737	cd ${localout[$i]}
3738	for file in $(ls *)
3739	do
3740	ln -f $file $tmp_data_catalog/${frelout[$i]}
3741	done
3742	cd $TEMPDIR
3743	fi
3744
3745
3746	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3747	if [[ $store_on_archive_system = true ]]
3748	then
3749
3750	if [[ $archive_system = asterix ]]
3751	then
3752	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3753	if [[ $files_for_pes = false ]]
3754	then
3755	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3756	else
3757	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3758	fi
3759	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3760	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3761	echo "then" >> archive_${frelout[$i]}
3762	echo " do_stageout=false" >> archive_${frelout[$i]}
3763	echo "else" >> archive_${frelout[$i]}
3764	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3765	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3766	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3767	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3768	if [[ $files_for_pes = false ]]
3769	then
3770	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3771	else
3772	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3773	fi
3774	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3775	echo "fi" >> archive_${frelout[$i]}
3776	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3777	elif [[ $archive_system = DMF ]]
3778	then
3779	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3780	if [[ $files_for_pes = false ]]
3781	then
3782	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3783	locat=DMF
3784	exit
3785	else
3786	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3787	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3788	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3789	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3790	fi
3791	elif [[ $archive_system = tivoli ]]
3792	then
3793	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3794	if [[ $files_for_pes = false ]]
3795	then
3796	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3797	echo "set -x" >> archive_${frelout[$i]}
3798	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3799	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3800	else
3801
3802	echo "set -x" >> archive_${frelout[$i]}
3803	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3804	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3805	cd $tmp_data_catalog
3806	all_files=`ls -1 ${frelout[$i]}/*`
3807	cd - > /dev/null
3808	(( inode = 0 ))
3809	(( tp1 = tasks_per_node + 1 ))
3810	while (( inode < nodes ))
3811	do
3812	# echo "*** all_files = \"$all_files\" "
3813	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3814	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3815	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3816	# echo "*** files = \"$files\" "
3817	# echo "*** all_files = \"$all_files\" "
3818	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3819	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3820	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
3821	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3822	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3823	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3824	(( inode = inode + 1 ))
3825	done
3826	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3827	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3828	fi
3829	elif [[ $archive_system = ut ]]
3830	then
3831	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3832	if [[ $files_for_pes = false ]]
3833	then
3834	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3835	echo "set -x" >> archive_${frelout[$i]}
3836	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3837	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3838	else
3839
3840	echo "set -x" >> archive_${frelout[$i]}
3841	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3842	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3843	cd $tmp_data_catalog
3844	all_files=`ls -1 ${frelout[$i]}/*`
3845	cd - > /dev/null
3846	(( inode = 0 ))
3847	(( tp1 = tasks_per_node + 1 ))
3848	while (( inode < nodes ))
3849	do
3850	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3851	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3852	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3853	(( inode = inode + 1 ))
3854	done
3855	fi
3856	elif [[ $archive_system = none ]]
3857	then
3858	printf " +++ archiving on $localhost not available!\n"
3859	fi
3860
3861	if [[ $archive_system != none ]]
3862	then
3863	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
3864	then
3865	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3866	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
3867	elif [[ $localhost = nech ]]
3868	then
3869	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3870	fi
3871	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3872	fi
3873	else
3874	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
3875	fi
3876
3877
3878	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3879	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3880	if [[ $files_for_pes = false ]]
3881	then
3882	cat /dev/null > ${pathout[$i]}
3883	else
3884	mkdir -p ${pathout[$i]}
3885	fi
3886
3887	fi
3888
3889
3890	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3891	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3892	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3893	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3894	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3895	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3896	if [[ "${actionout[$i]}" = ar ]]
3897	then
3898	if [[ $files_for_pes = false ]]
3899	then
3900	printf "\n >>> OUTPUT: ${localout[$i]} to"
3901	printf "\n ${pathout[$i]}"
3902	printf "\n File will be copied to archive-system ($archive_system) !\n"
3903	else
3904	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3905	printf "\n ${pathout[$i]}"
3906	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3907	fi
3908	mv ${localout[$i]} ${frelout[$i]}
3909
3910	file_saved=false
3911
3912	if [[ $archive_system = asterix ]]
3913	then
3914	do_stageout=true
3915	(( stageout_anz = 0 ))
3916	while [[ $do_stageout = true ]]
3917	do
3918	if [[ $files_for_pes = false ]]
3919	then
3920	stageout ${frelout[$i]} > STAGE_OUTPUT
3921	else
3922	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3923	fi
3924	cat STAGE_OUTPUT
3925	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3926	then
3927	file_saved=true
3928	do_stageout=false
3929	else
3930	if [[ $files_for_pes = false ]]
3931	then
3932	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3933	else
3934	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3935	fi
3936	(( stageout_anz = stageout_anz + 1 ))
3937	if (( stageout_anz == 10 ))
3938	then
3939	printf "\n +++ stoped after 10 unsuccessful tries!"
3940	archive_save=false
3941	do_stageout=false
3942	else
3943	printf "\n *** new try to store on archive after 15 min:"
3944	sleep 900
3945	fi
3946	fi
3947	done
3948	elif [[ $archive_system = DMF ]]
3949	then
3950	if [[ $files_for_pes = false ]]
3951	then
3952	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3953	locat=DMF
3954	exit
3955	else
3956	rm -rf $ARCHIVE/${frelout[$i]}
3957	cp -r ${frelout[$i]} $ARCHIVE
3958	fi
3959	file_saved=true
3960	elif [[ $archive_system = tivoli ]]
3961	then
3962	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3963	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3964	# GELEGT WERDEN
3965	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3966	chmod g+rx $tmp_data_catalog
3967	if [[ $files_for_pes = false ]]
3968	then
3969	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3970	else
3971	mkdir $tmp_data_catalog/${frelout[$i]}
3972	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3973	fi
3974
3975	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3976	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3977	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3978	if [[ $files_for_pes = false ]]
3979	then
3980	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3981	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3982	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3983	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3984	else
3985	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3986	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3987	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3988	fi
3989
3990	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3991	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3992	file_saved=true
3993
3994	elif [[ $archive_system = ut ]]
3995	then
3996	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3997	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3998	# GELEGT WERDEN
3999	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4000	chmod g+rx $tmp_data_catalog
4001	if [[ $files_for_pes = false ]]
4002	then
4003	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4004	else
4005	mkdir $tmp_data_catalog/${frelout[$i]}
4006	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4007	fi
4008
4009	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4010	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4011	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4012	if [[ $files_for_pes = false ]]
4013	then
4014	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4015	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4016	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4017	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4018	else
4019	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4020	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4021	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4022	fi
4023
4024	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4025	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4026	file_saved=true
4027
4028	else
4029	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4030	archive_save=false
4031	fi
4032	if [[ $file_saved = true ]]
4033	then
4034	if [[ $files_for_pes = false ]]
4035	then
4036	cat /dev/null > ${pathout[$i]}
4037	else
4038	mkdir -p ${pathout[$i]}
4039	fi
4040	fi
4041	fi
4042
4043	# APPEND AUF LOKALER MASCHINE
4044	if [[ "${actionout[$i]}" = "a" ]]
4045	then
4046	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4047	cat ${localout[$i]} >> ${pathout[$i]}
4048	fi
4049
4050	# KOPIEREN AUF LOKALER MASCHINE
4051	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4052	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4053	then
4054
4055	# KOPIEREN AUF EINPROZESSORMASCHINE
4056	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4057	then
4058	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4059	if [[ $link_local_output = true ]]
4060	then
4061	printf " using ln -f\n"
4062	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4063	fi
4064	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4065	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4066	then
4067	if [[ $link_local_output = true ]]
4068	then
4069	printf " ln failed, using cp...\n"
4070	fi
4071	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4072	fi
4073	else
4074	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4075	if [[ $link_local_output = true ]]
4076	then
4077	printf " using ln -f\n"
4078	ln -f ${localout[$i]} ${pathout[$i]}
4079	fi
4080	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4081	if [[ ! -f "${pathout[$i]}" ]]
4082	then
4083	if [[ $link_local_output = true ]]
4084	then
4085	printf " ln failed, using cp...\n"
4086	fi
4087	cp ${localout[$i]} ${pathout[$i]}
4088	fi
4089	fi
4090
4091	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4092	then
4093
4094	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4095	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4096	# WIRD DANN KOPIERT
4097	# PER MOVE UMBENANNT WERDEN
4098	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4099	if [[ $link_local_output = true ]]
4100	then
4101	printf " using ln -f\n"
4102	mkdir ${pathout[$i]}
4103	cd ${localout[$i]}
4104	for file in $(ls *)
4105	do
4106	ln -f $file ${pathout[$i]}
4107	done
4108	cd $TEMPDIR
4109	fi
4110	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4111	if [[ ! -f "${pathout[$i]}/_0000" ]]
4112	then
4113	if [[ $link_local_output = true ]]
4114	then
4115	printf " ln failed for .../_0000, using cp...\n"
4116	fi
4117	cp -r ${localout[$i]} ${pathout[$i]}
4118	fi
4119
4120	fi
4121	fi
4122	done
4123	if (( i != 0 ))
4124	then
4125	if [[ $transfer_problems = true ]]
4126	then
4127	printf "\n$striche\n *** OUTPUT-files saved"
4128	printf "\n +++ WARNING: some data transfers failed! \n"
4129	else
4130	printf "\n$striche\n *** all OUTPUT-files saved \n"
4131	fi
4132	fi
4133
4134
4135	# EVENTUELL FOLGEJOB STARTEN
4136	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4137	if [[ -f CONTINUE_RUN ]]
4138	then
4139
4140	if [[ $archive_save = true ]]
4141	then
4142
4143	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4144	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4145	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4146	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4147	# HANDEN
4148	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4149	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4150	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4151	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4152	then
4153	mc=`echo $mc \| sed 's/#/f/g'`
4154	fi
4155
4156
4157	# JOB STARTEN
4158	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4159	echo " $mc"
4160	printf "\n$striche\n"
4161	if [[ $localhost != $fromhost ]]
4162	then
4163
4164	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4165	then
4166	echo "*** ssh will be used to initiate restart-runs!"
4167	echo " return_addres=\"$return_addres\" "
4168	echo " return_username=\"$return_username\" "
4169	if [[ $return_addres = 172.20.25.41 ]]
4170	then
4171	# WORKAROUND AUF SCIROCCO AM TIT
4172	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4173	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4174	then
4175	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4176	else
4177	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4178	fi
4179	else
4180	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4181	locat=restart; exit
4182	fi
4183
4184	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4185	# DER AKTUELLE JOB ENDET
4186	if [[ $queue = special1q ]]
4187	then
4188	sleep 120
4189	else
4190	sleep 30
4191	fi
4192
4193	else
4194
4195	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4196	# RUFEN WERDEN, AUSSER AUF lcfimm
4197	cd $LOCAL_PWD
4198	if [[ $localhost = lcfimm ]]
4199	then
4200	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4201	else
4202	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4203	fi
4204	cd - > /dev/null
4205	fi
4206	printf "\n$striche\n *** restart-run initiated \n"
4207
4208
4209	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4210	# GEHOLT WORDEN SIND, LOESCHEN
4211	(( i = 0 ))
4212	while (( i < iin ))
4213	do
4214	(( i = i + 1 ))
4215	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4216	then
4217	rm -r $tmp_data_catalog/${frelin[$i]}
4218	fi
4219	done
4220
4221	else
4222
4223	printf "\n +++ no restart-run possible, since errors occured"
4224	printf "\n during the archive process"
4225	fi
4226
4227	fi
4228
4229
4230
4231	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4232	if [[ "$email_notification" != "none" ]]
4233	then
4234
4235	if [[ $localhost != $fromhost ]]
4236	then
4237	if [[ -f CONTINUE_RUN ]]
4238	then
4239	echo "PALM restart run necessary" > email_text
4240	echo "description header of actual run:" >> email_text
4241	cat CONTINUE_RUN >> email_text
4242	echo "mrun-command to restart:" >> email_text
4243	echo "$mc" >> email_text
4244	else
4245	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4246	fi
4247	mail $email_notification < email_text
4248	printf "\n *** email notification sent to \"$email_notification\" "
4249	fi
4250	fi
4251
4252
4253
4254	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4255	cd $HOME
4256	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4257
4258	else
4259
4260
4261	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4262	# CHENDE AKTIONEN DURCHGEFUEHRT
4263
4264	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4265	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4266	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4267	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4268	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4269	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4270	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4271	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4272	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4273	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4274	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4275	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4276	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4277	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4278	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4279	if [[ $use_openmp = true ]]
4280	then
4281	mrun_com=${mrun_com}" -O"
4282	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4283	else
4284	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4285	fi
4286	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4287	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4288	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4289	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4290	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4291	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4292	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4293	if [[ $do_remote = true ]]
4294	then
4295	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4296	fi
4297
4298
4299	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4300	jobfile=jobfile.$RANDOM
4301
4302
4303	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4304	echo "mkdir $TEMPDIR" >> $jobfile
4305	echo "cd $TEMPDIR" >> $jobfile
4306
4307
4308	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4309	if [[ $do_trace = true ]]
4310	then
4311	echo "set -x" >> $jobfile
4312	else
4313	echo "set +vx" >> $jobfile
4314	fi
4315
4316
4317	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4318	# DATEI FUER DEN JOB
4319	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4320	then
4321
4322	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4323	# KOPIEREN
4324	if [[ $restart_run != true ]]
4325	then
4326	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4327	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4328	fi
4329
4330	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4331	echo "set -x" >> $jobfile
4332	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4333	echo "export SOURCES_COMPLETE=true" >> $jobfile
4334
4335	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4336	# ARBEITSVERZEICHNIS VERSCHIEBEN
4337	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4338	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4339	echo "execute_mrun=true" >> $jobfile
4340	echo " " >> $jobfile
4341
4342	else
4343
4344	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4345	# SOWIE GEGEBENENFALLS DES MAKEFILES
4346	if [[ $do_compile = true ]]
4347	then
4348
4349	source_catalog=SOURCES_FOR_RUN_$fname
4350
4351	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4352	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4353	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4354	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4355	echo "export SOURCES_COMPLETE=true" >> $jobfile
4356	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4357
4358	for filename in $source_list
4359	do
4360	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4361	echo "cat > $filename << \"%END%\"" >> $jobfile
4362	cat $source_catalog/$filename >> $jobfile
4363	echo " " >> $jobfile
4364	echo "%END%" >> $jobfile
4365	echo " " >> $jobfile
4366	done
4367
4368	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4369	echo "cat > Makefile << \"%END%\"" >> $jobfile
4370	cat $source_catalog/Makefile >> $jobfile
4371	echo " " >> $jobfile
4372	echo "%END%" >> $jobfile
4373	echo " " >> $jobfile
4374
4375	echo "cd - > /dev/null" >> $jobfile
4376
4377	fi
4378
4379
4380	# ABSPEICHERN DER KONFIGURATIONSDATEI
4381	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4382	echo "cat > $config_file << \"%END%\"" >> $jobfile
4383	cat $config_file >> $jobfile
4384	echo "%END%" >> $jobfile
4385	echo " " >> $jobfile
4386
4387
4388	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4389	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4390	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4391	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4392	echo "%END%" >> $jobfile
4393	if [[ $host = lctit ]]
4394	then
4395	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4396	echo "mv mrun_new $mrun_script_name" >> $jobfile
4397	fi
4398	echo "chmod u+x $mrun_script_name" >> $jobfile
4399	echo "execute_mrun=true" >> $jobfile
4400	echo " " >> $jobfile
4401
4402	fi
4403
4404
4405	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4406	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4407	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4408	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4409	if [[ $do_remote = true ]]
4410	then
4411	(( i = 0 ))
4412	while (( i < iin ))
4413	do
4414	(( i = i + 1 ))
4415	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4416	if [[ "${transin[$i]}" = job ]]
4417	then
4418	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4419	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4420	echo " " >> $jobfile
4421	echo "%END%" >> $jobfile
4422	else
4423	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4424	fi
4425
4426	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4427	echo "if [[ \$? = 1 ]]" >> $jobfile
4428	echo "then" >> $jobfile
4429	echo " echo \" \" " >> $jobfile
4430	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4431	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4432	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4433	echo " execute_mrun=false" >> $jobfile
4434	echo "fi" >> $jobfile
4435	done
4436	fi
4437
4438	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4439	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4440	echo "LOCAL_PWD=$working_directory" >> $jobfile
4441	echo "export LOCAL_PWD" >> $jobfile
4442
4443	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4444	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4445	echo "export LOCAL_MRUN_PATH" >> $jobfile
4446
4447	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4448	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4449	then
4450	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4451	fi
4452
4453	# MRUN AUF ZIELRECHNER AUFRUFEN
4454	echo "set -x" >> $jobfile
4455	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4456
4457	echo 'ls -al; echo `pwd`' >> $jobfile
4458	echo "cd \$HOME" >> $jobfile
4459	echo "rm -rf $TEMPDIR" >> $jobfile
4460
4461
4462
4463
4464	# JOB PER SUBJOB STARTEN
4465	if [[ $silent = false ]]
4466	then
4467	printf "\n "
4468	else
4469	printf "\n\n"
4470	fi
4471
4472	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4473	rm -rf $jobfile
4474
4475
4476	fi # ENDE REMOTE-TEIL
4477
4478
4479
4480	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 494

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