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source: palm/trunk/SCRIPTS/mrun @ 377

Last change on this file since 377 was 377, checked in by raasch, 15 years ago
adjustments for openmp usage on sgi-ice
Property svn:keywords set to `Id Rev`
File size: 166.4 KB

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1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 377 2009-09-04 11:09:00Z raasch $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
189	# 25/08/09 - BjornM - adpated for lck
190	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
191	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
192
193
194	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
195
196	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
197	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
198	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
199
200	AddFilenames=""
201	additional_conditions=""
202	add_source_path=""
203	afname=""
204	archive_save=true
205	archive_system=none
206	compiler_name=""
207	cond1=""
208	cond2=""
209	config_file=.mrun.config
210	coupled_dist=""
211	coupled_mode="mpi1"
212	cpp_opts=""
213	cpp_options=""
214	cpumax=0
215	cpurest=0
216	delete_temporary_catalog=true
217	do_batch=false
218	do_compile=true
219	do_remote=false
220	do_stagein=true
221	do_stageout=true
222	do_trace=false
223	email_notification="none"
224	exclude=""
225	executable=""
226	execution_error=false
227	fimm=false
228	fname=test
229	fromhost=""
230	global_revision=""
231	group_number=none
232	host=""
233	host_file=""
234	hp=""
235	ignore_archive_error=false
236	input_list=""
237	interpreted_config_file=""
238	job_catalog="~/job_queue"
239	job_on_file=""
240	keep_data_from_previous_run=false
241	link_local_input=false
242	link_local_output=false
243	localhost_realname=$(hostname)
244	local_compile=false
245	local_dvrserver_running=.FALSE.
246	locat=normal
247	mainprog=""
248	makefile=""
249	mc=$0
250	while [[ $(echo $mc \| grep -c "/") != 0 ]]
251	do
252	mc=`echo $mc \| cut -f2- -d"/"`
253	done
254	module_files=""
255	mrun_script_name=$mc
256	netcdf_inc=""
257	netcdf_lib=""
258	netcdf_support=false
259	node_usage=default
260	numprocs=""
261	numprocs_atmos=0
262	numprocs_ocean=0
263	OOPT=""
264	openmp=false
265	output_list=""
266	package_list=""
267	punkte="..........................................................."
268	queue=none
269	read_from_config=""
270	restart_run=false
271	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
272	if [[ $return_addres = 130.75.105.158 ]]
273	then
274	return_addres=172.20.25.41
275	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
276	fi
277	return_password=""
278	return_username=$LOGNAME
279	remotecall=false
280	remote_username=""
281	run_coupled_model=false
282	run_mode=""
283	scirocco=false
284	store_on_archive_system=true
285	striche=" ----------------------------------------------------------------------------"
286	silent=false
287	source_list=""
288	source_path=SOURCE
289	tasks_per_node=""
290	threads_per_task=1
291	tmpcreate=false
292	tmp_data_catalog=""
293	transfer_problems=false
294	usern=$LOGNAME
295	use_openmp=false
296	working_directory=`pwd`
297	TOPT=""
298	XOPT=""
299	zeit=$( date \| cut -c 12-19 )
300
301	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
302	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
303
304	typeset -R30 calltime
305	typeset -L20 spalte1
306	typeset -L40 spalte2
307	typeset -L60 spalte3
308	typeset -L35 string1=`date`
309	typeset -L12 string2=$usern
310	typeset -L12 string3=$localhost_realname
311	typeset -L12 string4
312	typeset -L12 string5
313	typeset -L30 version="MRUN 2.0 Rev$Rev: 377 $"
314
315
316
317	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
318	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
319
320	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
321	# EXPORTIERT WERDEN
322	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
323	export group_number input_list memory numprocs output_list queue run_mode
324
325
326
327	# FEHLERBEHANDLUNG
328	# BEI EXIT:
329	trap 'rm -rf $working_directory/tmp_mrun
330	if [[ $locat != localhost ]]
331	then
332	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
333	# then
334	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
335	#MRUN-calls on $localhost
336	#
337	#date and time user localhost remotehost termination mrun-command
338	#--------------------------------------------------------------------------------------------------------------------
339	#%STATEND%
340	# chmod 666 ${mrun_path}/statistik/mrun_statistik
341	# fi
342	#
343	# # EINTRAG IN DIE STATISTIK-DATEI
344	# string4=$host
345	# string5=$locat
346	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
347	# then
348	# if [[ $do_batch = true ]]
349	# then
350	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
351	# else
352	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
353	# fi
354	# fi
355	echo " " > /dev/null
356	fi
357
358	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
359	then
360
361	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
362	(( i = 0 ))
363	while (( i < iec ))
364	do
365	(( i = i + 1 ))
366	printf "\n *** Execution of ERROR-command:\n"
367	printf " >>> ${err_command[$i]}\n"
368	eval ${err_command[$i]}
369	done
370	if [[ -n $interpreted_config_file ]] then
371	rm -rf $interpreted_config_file
372	fi
373	if [[ -n .mrun_environment ]] then
374	rm -rf .mrun_environment
375	fi
376	if [[ $tmpcreate = true ]]
377	then
378	printf "\n *** Contents of \"$TEMPDIR\":\n"
379	ls -al; cd
380	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
381	fi
382	if [[ "$dvrserver_id" != "" ]]
383	then
384	echo "+++ killing dvrserver_id=$dvrserver_id"
385	kill $dvrserver_id
386	fi
387	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
388	then
389	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
390	fi
391	printf "\n\n+++ MRUN killed \n\n"
392	elif [[ $locat != control_c ]]
393	then
394	printf "\n\n --> all actions finished\n\n"
395	printf " Bye, bye $usern !!\n\n"
396	fi' exit
397
398
399	# BEI TERMINAL-BREAK:
400	trap 'rm -rf $working_directory/tmp_mrun
401	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
402	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
403	then
404	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
405	fi
406	if [[ "$dvrserver_id" != "" ]]
407	then
408	echo "+++ killing dvrserver_id=$dvrserver_id"
409	kill $dvrserver_id
410	fi
411	printf "\n+++ MRUN killed by \"^C\" \n\n"
412	locat=control_c
413	exit
414	' 2
415
416
417	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
418	# BEEN SET
419	if [[ "$PALM_BIN" = "" ]]
420	then
421	printf "\n +++ environment variable PALM_BIN has not been set"
422	printf "\n please set it to the directory where the PALM scripts are located"
423	locat=palm_bin; exit
424	fi
425	export PATH=$PALM_BIN:$PATH
426
427
428
429	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
430	# FUER FOLGEJOBS BENOETIGT WIRD
431	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
432	do
433	case $option in
434	(a) afname=$OPTARG;;
435	(A) store_on_archive_system=false; mc="$mc -A";;
436	(b) do_batch=true; mc="$mc -b";;
437	(B) delete_temporary_catalog=false; mc="$mc -B";;
438	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
439	(C) restart_run=true; mc="$mc -C";;
440	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
441	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
442	(F) job_on_file="-D"; mc="$mc -F";;
443	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
444	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
445	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
446	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
447	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
448	(I) ignore_archive_error=true; mc="$mc -I";;
449	(k) keep_data_from_previous_run=true; mc="$mc -k";;
450	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
451	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
452	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
453	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
454	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
455	(O) use_openmp=true; mc="$mc -O";;
456	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
457	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
458	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
459	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
460	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
461	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
462	(S) read_from_config=false; mc="$mc -S";;
463	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
464	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
465	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
466	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
467	(v) silent=true; mc="$mc -v";;
468	(x) do_trace=true;set -x; mc="$mc -x";;
469	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
470	(y) ocean_file_appendix=true; mc="$mc -y";;
471	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
472	(\?) printf "\n +++ unknown option $OPTARG \n"
473	printf "\n --> type \"$0 ?\" for available options \n"
474	locat=parameter;exit;;
475	esac
476	done
477
478
479	# EVTL. POSITIONSPARAMETER EINLESEN
480	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
481	shift OPTIND-1
482
483
484	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
485	if [[ "$1" = "?" ]]
486	then
487	(printf "\n *** mrun can be called as follows:\n"
488	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
489	printf "\n Description of available options:\n"
490	printf "\n Option Description Default-Value"
491	printf "\n -a base name of input files equiv. -d"
492	printf "\n -A no archiving when using file-attribute fl"
493	printf "\n -b batch-job on local machine ---"
494	printf "\n -B do not delete temporary directory at end ---"
495	printf "\n -c configuration file .mrun.config"
496	printf "\n -d base name of files attached to program test"
497	printf "\n -D preprocessor(cpp)-directives \"\" "
498	printf "\n -F create remote job file only ---"
499	printf "\n -h execution host $localhost_realname"
500	printf "\n -i INPUT control list \"\" "
501	printf "\n -I archiving errors of previous batch-jobs"
502	printf "\n will be ignored"
503	printf "\n -k keep data from previous run"
504	printf "\n -K additional conditions for controling"
505	printf "\n usage of conditional code and"
506	printf "\n env-variables in configuration file \"\" "
507	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
508	printf "\n -M Makefile name Makefile"
509	printf "\n -n node usage (shared/not_shared) depending on -h"
510	printf "\n -o OUTPUT control list \"\" "
511	printf "\n -O use OpenMP ---"
512	printf "\n -p software package list \"\" "
513	printf "\n -q queue \"$queue\" "
514	printf "\n -r run control list (combines -i -o) \"\" "
515	printf "\n -s filenames of routines to be compiled \"\" "
516	printf "\n must end with .f, .f90, .F, or .c !"
517	printf "\n use \"..\" for more than one file and wildcards"
518	printf "\n -s TEST compiles all files with w-permit"
519	printf "\n -S config file interpreted by shellscript ---"
520	printf "\n -t allowed cpu-time in seconds (batch) 0"
521	printf "\n -T tasks per node depending on -h"
522	printf "\n -u username on remote machine \"\" "
523	printf "\n -v no prompt for confirmation ---"
524	printf "\n -x tracing of mrun for debug purposes ---"
525	printf "\n -X # of processors (on parallel machines) 1"
526	printf "\n -y add appendix \"_O\" to all local output"
527	printf "\n files (ocean precursor runs followed by"
528	printf "\n coupled atmosphere-ocean runs) ---"
529	printf "\n -Y run coupled model, \"#1 #2\" with"
530	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
531	printf "\n "
532	printf "\n Possible values of positional parameter <modus>:"
533	printf "\n \"?\" - this outline \n\n") \| more
534	exit
535	elif [[ "$1" != "" ]]
536	then
537	printf "\n +++ positional parameter $1 unknown \n"
538	locat=parameter; exit
539	fi
540
541
542
543	# KURZE STARTMELDUNG
544	printf "\n*** $version "
545	printf "\n will be executed. Please wait ..."
546
547
548
549	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
550	if [[ ! -f $config_file ]]
551	then
552	printf "\n\n +++ configuration file: "
553	printf "\n $config_file"
554	printf "\n does not exist"
555	locat=connect; exit
556	fi
557
558
559	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
560	line=""
561	grep "%host_identifier" $config_file > tmp_mrun
562	while read line
563	do
564	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
565	then
566	HOSTNAME=`echo $line \| cut -d" " -s -f2`
567	host_identifier=`echo $line \| cut -d" " -s -f3`
568	if [[ $localhost_realname = $HOSTNAME ]]
569	then
570	localhost=$host_identifier
571	break
572	fi
573	fi
574	done < tmp_mrun
575
576	if [[ "$localhost" = "" ]]
577	then
578	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
579	printf "\n for local host \"$localhost_realname\"."
580	printf "\n Please add line"
581	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
582	printf "\n to the configuration file."
583	locat=localhost; exit
584	fi
585
586
587	# HOSTSPEZIFISCHE VARIABLEN SETZEN
588	case $localhost_realname in
589	(breg-en0\|berni-en0) archive_system=tivoli;;
590	(cs*) archive_system=ut;;
591	(fimm.bccs.uib.no) fimm=true;;
592	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
593	(hreg-en0\|hanni-en0) archive_system=tivoli;;
594	(scirocco) scirocco=true;;
595	esac
596
597
598
599	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
600	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
601	[[ "$afname" = "" ]] && afname=$fname
602
603
604	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
605	if [[ "$run_mode" != "" ]]
606	then
607	input_list="$input_list $run_mode"
608	output_list="$output_list $run_mode"
609	fi
610
611
612	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
613	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
614	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
615	# STARTET)
616	if [[ "$fromhost" = "" ]]
617	then
618	fromhost=$localhost
619	fi
620
621
622	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
623	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
624	then
625	source_list=TEST
626	local_compile=true
627	host=$localhost
628	fi
629
630
631	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
632	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
633	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
634	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
635	if [[ -n $host && "$host" != $localhost ]]
636	then
637	do_batch=true
638	do_remote=true
639	case $host in
640	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4\|lck) true;;
641	(*) printf "\n"
642	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
643	printf "\n is not available"
644	locat=nqs; (( iec = 0 )); exit;;
645	esac
646	else
647	host=$localhost
648	fi
649
650
651	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
652	if [[ -n $additional_conditions ]]
653	then
654	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
655	cond1=`echo $additional_conditions \| cut -d" " -f1`
656	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
657	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
658	if [[ -n $dummy ]]
659	then
660	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
661	locat=options; exit
662	fi
663	fi
664
665
666	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
667	if [[ $run_coupled_model = true ]]
668	then
669
670	if [[ -n $coupled_dist ]]
671	then
672
673	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
674	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
675
676	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
677	then
678
679	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
680	printf "\n PEs (total) : $numprocs"
681	printf "\n PEs (atmosphere): $numprocs_atmos"
682	printf "\n PEs (ocean) : $numprocs_ocean"
683	locat=coupling; exit
684
685	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
686	# THIS SHOULD BE REMOVED IN FUTURE
687	elif (( $numprocs_ocean != $numprocs_atmos ))
688	then
689
690	printf "\n +++ currently only 1:1 topologies are supported"
691	printf "\n PEs (total) : $numprocs"
692	printf "\n PEs (atmosphere): $numprocs_atmos"
693	printf "\n PEs (ocean) : $numprocs_ocean"
694	(( numprocs_atmos = $numprocs / 2 ))
695	(( numprocs_ocean = $numprocs / 2 ))
696	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
697
698	fi
699
700	else
701
702	(( numprocs_ocean = $numprocs / 2 ))
703	(( numprocs_atmos = $numprocs / 2 ))
704
705	fi
706	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
707
708	# GET coupled_mode FROM THE CONFIG FILE
709	line=""
710	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
711	while read line
712	do
713	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
714	then
715	coupled_mode="mpi2"
716	fi
717	done < tmp_mrun
718
719	fi
720
721
722	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
723	# ARCHIVIERUNG FEHLGESCHLAGEN IST
724	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
725	then
726	if [[ $ignore_archive_error = false ]]
727	then
728	printf "\n +++ data archiving of previous run failed"
729	printf "\n see directory \~/job_queue on remote machine"
730	locat=archive; exit
731	else
732	printf "\n +++ warning: data archiving in a previous run failed"
733	printf "\n MRUN continues, trying to get backup copy"
734	fi
735	fi
736
737
738
739	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
740	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
741	if [[ "$read_from_config" = false ]]
742	then
743
744	[[ $silent = false ]] && printf "\n Reading the configuration file... "
745	while read zeile
746	do
747	[[ $silent = false ]] && printf "."
748
749
750	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
751	# ERSETZEN
752	eval zeile=\"$zeile\"
753
754
755	# INTERPRETATION DER ZEILE
756	if [[ "$(echo $zeile)" = "" ]]
757	then
758	# LEERZEILE, KEINE AKTION
759	continue
760
761	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
762	then
763
764	# ZEILE IST KOMMENTARZEILE
765	true
766
767	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
768	then
769
770	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
771	zeile=$(echo $zeile \| cut -c2-)
772	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
773	var=`echo $zeile \| cut -d" " -f1`
774	value=`echo $zeile \| cut -d" " -s -f2`
775	for_host=`echo $zeile \| cut -d" " -s -f3`
776	for_cond1=`echo $zeile \| cut -d" " -s -f4`
777	for_cond2=`echo $zeile \| cut -d" " -s -f5`
778
779	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
780	then
781
782	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
783	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
784	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
785
786
787	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
788	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
789	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
790	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
791	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
792	# KONFIGURATIONSDATEI
793	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
794	then
795	eval $var=\$value
796
797	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
798	if [[ $do_trace = true ]]
799	then
800	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
801	fi
802	fi
803
804	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
805	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
806	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
807	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
808	if [[ $var = host ]]
809	then
810	if [[ -n $host && "$host" != $localhost ]]
811	then
812	do_batch=true
813	do_remote=true
814	case $host in
815	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
816	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
817	printf "\n is not available"
818	locat=nqs; exit;;
819	esac
820	else
821	host=$localhost
822	fi
823	fi
824
825	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
826	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
827	# DEN PROGRAMMEN BENOETIGT WERDEN
828	export $var
829	fi
830
831
832
833
834	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
835	then
836
837	# ZEILE DEFINIERT ERROR-KOMMANDO
838	(( iec = iec + 1 ))
839	zeile=$(echo $zeile \| cut -c4-)
840	err_command[$iec]="$zeile"
841
842	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
843	then
844
845	# ZEILE DEFINIERT INPUT-KOMMANDO
846	(( iic = iic + 1 ))
847	zeile=$(echo $zeile \| cut -c4-)
848	in_command[$iic]="$zeile"
849
850	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
851	then
852
853	# ZEILE DEFINIERT OUTPUT-KOMMANDO
854	(( ioc = ioc + 1 ))
855	zeile=$(echo $zeile \| cut -c4-)
856	out_command[$ioc]="$zeile"
857
858	else
859
860	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
861	# s2a: in/out - Feld
862	# s2b: loc - Feld (optional)
863	# s2c: tr/ar - Feld (optional)
864	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
865	s1=`echo $zeile \| cut -d" " -f1`
866	s2=`echo $zeile \| cut -d" " -s -f2`
867	s2a=$(echo $s2 \| cut -d":" -f1)
868	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
869	then
870	s2b=""
871	s2c=""
872	else
873	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
874	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
875	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
876	fi
877	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
878	s3=`echo $zeile \| cut -d" " -f3`
879	s4=`echo $zeile \| cut -d" " -s -f4`
880	s5=`echo $zeile \| cut -d" " -s -f5`
881	s6=`echo $zeile \| cut -d" " -s -f6`
882
883
884	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
885	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
886	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
887	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
888	# HANDEN SEIN MUSS (D.H. s2b = loc)
889	IFSALT="$IFS"; IFS="$IFS:"
890	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
891	then
892	found=false
893	for actual in $input_list
894	do
895	for formal in $s3
896	do
897	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
898	done
899	done
900	if [[ $found = true ]]
901	then
902	(( iin = iin + 1 ))
903	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
904	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
905	extin[$iin]=$s6
906	fi
907	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
908	then
909	found=false
910	for actual in $output_list
911	do
912	for formal in $s3
913	do
914	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
915	done
916	done
917	if [[ $found = true ]]
918	then
919	(( iout = iout + 1 ))
920	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
921	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
922	fi
923	elif [[ "$s2a" != in && "$s2a" != out ]]
924	then
925	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
926	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
927	locat=connect; exit
928	fi
929	IFS="$IFSALT"
930	fi
931	done < $config_file
932
933	else
934
935
936	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
937	[[ $silent = false ]] && printf "..."
938	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
939	export interpreted_config_file=.icf.$RANDOM
940
941
942
943	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
944	# VERFUEGUNG STELLEN
945	cat > .mrun_environment << %%END%%
946	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
947	config_file = '$config_file', do_remote = '$do_remote',
948	do_trace = '$do_trace', host = '$host',
949	input_list = '$input_list', icf = '$interpreted_config_file',
950	localhost = '$localhost', output_list = '$output_list' /
951
952	%%END%%
953
954	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
955	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
956	mrun_memory=$memory
957	mrun_group_number=$group_number
958	mrun_cpumax=$cpumax
959	mrun_numprocs=$numprocs
960
961	if [[ $localhost_realname = "sx-fep" ]]
962	then
963	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
964	else
965	interpret_config.x
966	fi
967	rm .mrun_environment
968
969
970	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
971	chmod u+x $interpreted_config_file
972	export PATH=$PATH:.
973	. $interpreted_config_file
974	rm $interpreted_config_file
975
976
977	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
978	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
979	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
980	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
981	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
982
983	fi
984
985
986	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
987	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
988	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
989	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
990	if [[ "$SOURCES_COMPLETE" = "" ]]
991	then
992
993	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
994	# VEREINBART WURDE
995	source_path=""
996	line=""
997	grep "%source_path" $config_file > tmp_mrun
998	while read line
999	do
1000	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1001	then
1002	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1003	then
1004	global_source_path=`echo $line \| cut -d" " -f2`
1005	fi
1006	fi
1007	done < tmp_mrun
1008
1009	line=""
1010	found=false
1011	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1012	while read line
1013	do
1014	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1015	then
1016	if [[ $found = true ]]
1017	then
1018	printf "\n\n +++ more than one source path found in configuration file"
1019	printf "\n for local host \"$localhost\" "
1020	locat=source_path; exit
1021	fi
1022	source_path=`echo $line \| cut -d" " -f2`
1023	found=true
1024	fi
1025	done < tmp_mrun
1026	rm tmp_mrun
1027
1028	if [[ "$source_path" = "" ]]
1029	then
1030	if [[ "$global_source_path" != "" ]]
1031	then
1032	source_path=$global_source_path
1033	else
1034	printf "\n\n +++ no source path found in configuration file"
1035	printf "\n for local host \"$localhost\" "
1036	locat=source_path; exit
1037	fi
1038	fi
1039	eval source_path=$source_path
1040
1041	if [[ ! -d $source_path ]]
1042	then
1043	printf "\n\n +++ source path \"$source_path\" on local host"
1044	printf "\n \"$localhost\" does not exist"
1045	locat=source_path; exit
1046	fi
1047
1048	fi
1049
1050
1051	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1052	# DURCH OPTION -G MITGETEILT)
1053	if [[ "$global_revision" = "" ]]
1054	then
1055	global_revision=`svnversion $source_path 2>/dev/null`
1056	global_revision="Rev: $global_revision"
1057	fi
1058
1059
1060	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1061	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1062	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1063	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1064	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1065	if [[ -n $host && "$host" != $localhost ]]
1066	then
1067	do_batch=true
1068	do_remote=true
1069	case $host in
1070	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4\|lck) true;;
1071	(*) printf "\n"
1072	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1073	printf "\n is not available"
1074	locat=nqs; (( iec = 0 )); exit;;
1075	esac
1076	else
1077	host=$localhost
1078	fi
1079
1080
1081	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1082	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1083	then
1084
1085	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1086	if [[ ! -n $numprocs ]]
1087	then
1088	printf "\n"
1089	printf "\n +++ option \"-K parallel\" requires additional specification"
1090	printf "\n of the number of processors to be used by"
1091	printf "\n mrun-option \"-X\" or by environment-variable"
1092	printf "\n \"numprocs\" in the configuration file"
1093	locat=numprocs; (( iec = 0 )); exit
1094	fi
1095
1096	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1097	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1098	# GESAMTPROZESSORANZAHL IST
1099	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1100	then
1101	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1102	(( ival = $tasks_per_node ))
1103	(( pes = numprocs ))
1104	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1105	# then
1106	# (( pes = pes - 1 ))
1107	# fi
1108	(( ii = pes / ival ))
1109	if (( pes - ii * ival > 0 ))
1110	then
1111	printf "\n"
1112	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1113	printf "\n divisor of the total number of processors (option \"-X\")"
1114	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1115	locat=tasks_per_node; (( iec = 0 )); exit
1116	fi
1117	fi
1118
1119	# IBMY HAT NUR EINEN KNOTEN
1120	if [[ $host = ibmy ]]
1121	then
1122	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1123	then
1124	printf "\n"
1125	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1126	printf "\n total number of processors (option \"-X\")"
1127	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1128	locat=tasks_per_node; (( iec = 0 )); exit
1129	fi
1130	fi
1131
1132	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1133	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1134	if [[ $use_openmp = true ]]
1135	then
1136	threads_per_task=$tasks_per_node
1137	tasks_per_node=1
1138	fi
1139
1140	# SETTINGS FOR SUBJOB-COMMAND
1141	if [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1142	then
1143	(( tp1 = tasks_per_node * threads_per_task ))
1144	TOPT="-T $tp1"
1145	else
1146	TOPT="-T $tasks_per_node"
1147	fi
1148	OOPT="-O $threads_per_task"
1149
1150	# GESAMTZAHL DER KNOTEN BESTIMMEN
1151	if [[ "$tasks_per_node" != "" ]]
1152	then
1153	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1154	fi
1155
1156	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1157	# SETZEN
1158	if [[ $node_usage = default ]]
1159	then
1160	if [[ $host = ibms ]]
1161	then
1162	node_usage=shared
1163	elif [[ $host = lctit ]]
1164	then
1165	node_usage=RAM64GB
1166	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1167	then
1168	node_usage=singlejob
1169	else
1170	node_usage=not_shared
1171	fi
1172	fi
1173
1174	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1175	then
1176	printf "\n"
1177	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1178	printf "\n \"shared\" or \"not_shared\""
1179	locat=tasks_per_node; (( iec = 0 )); exit
1180	fi
1181
1182	fi
1183
1184	# PRUEFEN, OB HOSTFILE EXISTIERT
1185	if [[ -n $hostfile ]]
1186	then
1187	if [[ ! -f $hostfile ]]
1188	then
1189	printf "\n"
1190	printf "\n +++ hostfile \"$hostfile\" does not exist"
1191	locat=hostfile; exit
1192	fi
1193	fi
1194
1195	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1196	if [[ $host = ibmy && $do_remote = false ]]
1197	then
1198	if [[ ! -f $HOME/.rhosts ]]
1199	then
1200	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1201	printf "\n\n *** file:"
1202	printf "\n $HOME/.rhosts"
1203	printf "\n was created\n"
1204	fi
1205	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1206	then
1207	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1208	printf "\n\n *** file:"
1209	printf "\n $HOME/.rhosts"
1210	printf "\n was extended by the name of the current host\n"
1211	fi
1212	fi
1213
1214
1215
1216	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1217	if [[ $queue = none ]]
1218	then
1219	case $host in
1220	(ibmb) if [[ $node_usage = shared ]]
1221	then
1222	queue=cshare
1223	else
1224	queue=csolo
1225	fi;;
1226	(ibmh) queue=no_class;;
1227	(ibmy) queue=parallel;;
1228	(lcsgib) queue=bigq;;
1229	(lcsgih) queue=bigq;;
1230	(lctit) queue=RAM64GB;;
1231	(nech) queue=none;;
1232	(necriam) queue=SP;;
1233	(unics) queue=unics;;
1234	esac
1235	fi
1236
1237
1238	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1239	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1240	# ERMITTELN
1241	(( i = 0 ))
1242	while (( i < iin ))
1243	do
1244	(( i = i + 1 ))
1245	(( maxcycle = 0 ))
1246
1247	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1248	if [[ "${actionin[$i]}" = di ]]
1249	then
1250	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1251	# REM-MASCHINE AUSWERTEN
1252	eval filename=${pathin[$i]}/${endin[$i]}
1253	else
1254	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1255	# REM-MASCHINE AUSWERTEN
1256	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1257	fi
1258
1259	# PRUEFEN AUF VORHANDENSEIN
1260	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1261	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1262	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1263	then
1264	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1265	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1266	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1267	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1268	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1269	if [[ "${transin[$i]}" != "locopt" ]]
1270	then
1271	printf "\n\n +++ INPUT-file: "
1272	if [[ "${extin[$i]}" = "" ]]
1273	then
1274	printf "\n $filename"
1275	else
1276	printf "\n $filename.${extin[$i]}"
1277	fi
1278	printf "\n does not exist\n"
1279	locat=input; exit
1280	else
1281	transin[$i]="unavailable"
1282	fi
1283	else
1284
1285	# ZYKLUSNUMMER FESTSTELLEN
1286	ls -1 -d $filename > filelist 2>/dev/null
1287	ls -1 -d $filename.* >> filelist 2>/dev/null
1288	while read zeile
1289	do
1290	cycle=$(print $zeile \| cut -f2 -d".")
1291	if [[ "$cycle" = "$zeile" ]]
1292	then
1293	(( icycle = 0 ))
1294	elif [[ "$cycle" = "${extin[$i]}" ]]
1295	then
1296	(( icycle = 0 ))
1297	else
1298	(( icycle = $cycle ))
1299	fi
1300	if (( icycle > maxcycle ))
1301	then
1302	(( maxcycle = icycle ))
1303	file_to_be_used=$zeile
1304	fi
1305	done <filelist
1306	rm filelist
1307
1308	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1309	if (( maxcycle > 0 ))
1310	then
1311	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1312	then
1313	filename=${filename}.$maxcycle.${extin[$i]}
1314	else
1315	filename=${filename}.$maxcycle
1316	fi
1317	else
1318	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1319	then
1320	filename=${filename}.${extin[$i]}
1321	fi
1322	fi
1323
1324	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1325	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1326	absnamein[$i]=$filename
1327	if (( maxcycle > 0 ))
1328	then
1329	if [[ "${actionin[$i]}" = di ]]
1330	then
1331	frelin[$i]=${endin[$i]}.$maxcycle
1332	else
1333	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1334	fi
1335	else
1336	if [[ "${actionin[$i]}" = di ]]
1337	then
1338	frelin[$i]=${endin[$i]}
1339	else
1340	frelin[$i]=${afname}${endin[$i]}
1341	fi
1342	fi
1343
1344	fi
1345	done
1346
1347
1348	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1349	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1350	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1351	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1352	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1353	(( i = 0 ))
1354	while (( i < iout ))
1355	do
1356	(( i = i + 1 ))
1357	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1358	then
1359	if [[ "${actionout[$i]}" = tr ]]
1360	then
1361	actionout[$i]=""
1362	elif [[ "${actionout[$i]}" = trpe ]]
1363	then
1364	actionout[$i]=pe
1365	elif [[ "${actionout[$i]}" = tra ]]
1366	then
1367	actionout[$i]=a
1368	fi
1369	(( maxcycle = 0 ))
1370	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1371	eval catalogname=${pathout[$i]}
1372	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1373	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1374	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1375	then
1376
1377	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1378	if cat /dev/null > $filename
1379	then
1380	rm $filename
1381	else
1382
1383	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1384	if [[ ! -d $catalogname ]]
1385	then
1386	if mkdir -p $catalogname
1387	then
1388	printf "\n\n *** directory:"
1389	printf "\n $catalogname"
1390	printf "\n was created\n"
1391	else
1392	printf "\n\n +++ OUTPUT-file:"
1393	printf "\n $filename"
1394	printf "\n cannot be created, because directory does not exist"
1395	printf "\n and cannot be created either"
1396	printf "\n"
1397	locat=output ; exit
1398	fi 2>/dev/null
1399	else
1400	printf "\n\n +++ OUTPUT-file:"
1401	printf "\n $filename"
1402	printf "\n cannot be created, although directory exists"
1403	printf "\n"
1404	locat=output ; exit
1405	fi
1406	fi 2>/dev/null
1407	else
1408
1409	# ZYKLUSNUMMER FESTSTELLEN
1410	ls -1 -d $filename > filelist 2>/dev/null
1411	ls -1 -d $filename.* >> filelist 2>/dev/null
1412	while read zeile
1413	do
1414	cycle=$(print $zeile \| cut -f2 -d".")
1415	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1416	then
1417	(( icycle = 1 ))
1418	else
1419	(( icycle = $cycle + 1 ))
1420	fi
1421	if (( icycle > maxcycle ))
1422	then
1423	(( maxcycle = icycle ))
1424	fi
1425	done <filelist
1426	rm filelist
1427	fi
1428
1429	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1430	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1431	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1432	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1433	if [[ "${actionout[$i]}" != a ]]
1434	then
1435	if (( maxcycle > 0 ))
1436	then
1437	filename=${filename}.$maxcycle
1438	if cat /dev/null > $filename
1439	then
1440	rm $filename
1441	else
1442	printf "\n +++ OUTPUT-file:"
1443	printf "\n $filename"
1444	printf "\n cannot be created"
1445	locat=output ; exit
1446	fi
1447	fi
1448	else
1449	(( maxcycle = maxcycle - 1 ))
1450	if (( maxcycle > 0 ))
1451	then
1452	filename=${filename}.$maxcycle
1453	fi
1454	fi
1455
1456	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1457	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1458	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1459	pathout[$i]=$filename
1460	if (( maxcycle > 0 ))
1461	then
1462	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1463	else
1464	frelout[$i]=${fname}${endout[$i]}
1465	fi
1466
1467	fi
1468	done
1469
1470
1471	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1472	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1473	then
1474	if [[ "$dvr_inc" = "" ]]
1475	then
1476	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1477	printf "\n This is required for the dvrp_graphics package.\n"
1478	locat=dvr; exit
1479	fi
1480	if [[ "$dvr_lib" = "" ]]
1481	then
1482	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1483	printf "\n This is required for the dvrp_graphics package.\n"
1484	locat=dvr; exit
1485	fi
1486	fi
1487
1488
1489	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1490	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1491	# UEBERSETZT ZU WERDEN)
1492	if [[ "$mainprog" = "" && "$executable" = "" ]]
1493	then
1494	printf "\n +++ neither main program nor executable defined"
1495	locat=source; exit
1496	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1497	then
1498	printf "\n +++ main program as well as executable defined"
1499	locat=source; exit
1500	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1501	then
1502	do_compile=false
1503	fi
1504
1505
1506	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1507	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1508	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1509	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1510	then
1511	rm -rf SOURCES_FOR_RUN_$fname
1512	mkdir SOURCES_FOR_RUN_$fname
1513	fi
1514
1515
1516	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1517	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1518	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1519	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1520	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1521	then
1522
1523	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1524	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1525
1526
1527	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1528	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1529	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1530	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1531	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1532	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1533	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1534	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1535	# GESAMMELT
1536	if [[ "$source_list" = WRITE_PERMIT ]]
1537	then
1538
1539	source_list=""
1540	cd $source_path
1541
1542
1543	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1544	Names=$(ls -1 *.f90 2>&1)
1545	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1546	Names=$(ls -1 *.F90 2>&1)
1547	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1548	Names=$(ls -1 *.F 2>&1)
1549	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1550	Names=$(ls -1 *.f 2>&1)
1551	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1552	Names=$(ls -1 *.c 2>&1)
1553	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1554
1555
1556	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1557	for dateiname in $Filenames
1558	do
1559	if [[ -w $dateiname ]]
1560	then
1561	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1562	then
1563	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1564	source_list=$source_list"$dateiname "
1565	fi
1566	fi
1567	done
1568
1569	cd - > /dev/null
1570
1571
1572	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1573	then
1574
1575	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1576	source_list=""
1577	cd $source_path
1578
1579
1580	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1581	if [[ ! -d .svn ]]
1582	then
1583	printf "\n\n +++ source directory"
1584	printf "\n \"$source_path\" "
1585	printf "\n is not under control of \"subversion\"."
1586	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1587	fi
1588
1589
1590	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1591	Filenames=""
1592	svn status > tmp_mrun
1593	while read line
1594	do
1595	firstc=`echo $line \| cut -c1`
1596	if [[ $firstc = M \|\| $firstc = "?" ]]
1597	then
1598	Name=`echo "$line" \| cut -c8-`
1599	extension=`echo $Name \| cut -d. -f2`
1600	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1601	then
1602	Filenames="$Filenames "$Name
1603	fi
1604	fi
1605	done < tmp_mrun
1606
1607
1608	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1609	for dateiname in $Filenames
1610	do
1611	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1612	source_list=$source_list"$dateiname "
1613	done
1614
1615	cd - > /dev/null
1616
1617
1618	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1619	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1620	# VORHANDEN
1621	elif [[ "$source_list" != "" && $restart_run != true ]]
1622	then
1623
1624	cd $source_path
1625
1626	for filename in $source_list
1627	do
1628
1629	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1630	if [[ $(print $filename \| grep -c "/") != 0 ]]
1631	then
1632	printf "\n +++ source code file: $filename"
1633	printf "\n must not contain (\"/\") "
1634	locat=source; exit
1635	fi
1636
1637	if [[ ! -f $filename ]]
1638	then
1639	printf "\n +++ source code file: $filename"
1640	printf "\n does not exist"
1641	locat=source; exit
1642	else
1643	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1644	fi
1645
1646	done
1647
1648	cd - > /dev/null
1649
1650	fi
1651
1652
1653	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1654	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1655	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1656	if [[ $restart_run != true ]]
1657	then
1658
1659	if [[ ! -f "$source_path/$mainprog" ]]
1660	then
1661	printf "\n\n +++ main program: $mainprog"
1662	printf "\n does not exist in source directory"
1663	printf "\n \"$source_path\"\n"
1664	locat=source; exit
1665	else
1666	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1667	then
1668	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1669	source_list=${mainprog}" $source_list"
1670	fi
1671	fi
1672	fi
1673
1674
1675	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1676	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1677	if [[ "$restart_run" != true ]]
1678	then
1679	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1680	if [[ ! -f $makefile ]]
1681	then
1682	printf "\n +++ file \"$makefile\" does not exist"
1683	locat=make; exit
1684	else
1685	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1686	fi
1687	fi
1688
1689
1690	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1691	if [[ $restart_run != true && "$add_source_path" != "" ]]
1692	then
1693
1694	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1695	if [[ ! -d $add_source_path ]]
1696	then
1697	printf "\n\n +++ WARNING: additional source code directory"
1698	printf "\n \"$add_source_path\" "
1699	printf "\n does not exist or is not a directory."
1700	printf "\n No source code will be used from this directory!\n"
1701	add_source_path=""
1702	sleep 3
1703	else
1704
1705	cd $add_source_path
1706	found=false
1707
1708	Names=$(ls -1 *.f90 2>&1)
1709	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1710	Names=$(ls -1 *.F90 2>&1)
1711	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1712	Names=$(ls -1 *.F 2>&1)
1713	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1714	Names=$(ls -1 *.f 2>&1)
1715	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1716	Names=$(ls -1 *.c 2>&1)
1717	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1718
1719	cd - > /dev/null
1720	cd SOURCES_FOR_RUN_$fname
1721
1722	# COPY MAKEFILE IF EXISTING
1723	if [[ -f $add_source_path/Makefile ]]
1724	then
1725	printf "\n\n *** user Makefile from directory"
1726	printf "\n \"$add_source_path\" is used \n"
1727	sleep 1
1728	cp $add_source_path/Makefile .
1729	fi
1730
1731	for dateiname in $AddFilenames
1732	do
1733	if [[ -f $dateiname ]]
1734	then
1735	printf "\n +++ source code file \"$dateiname\" found in additional"
1736	printf "\n source code directory \"$add_source_path\" "
1737	printf "\n but was also given with option \"-s\" which means that it should be taken"
1738	printf "\n from directory \"$source_path\"."
1739	locat=source; exit
1740	fi
1741
1742	cp $add_source_path/$dateiname .
1743	source_list="$source_list $dateiname"
1744
1745	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1746	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1747	then
1748	printf "\n\n +++ user file \"$dateiname\" "
1749	printf "\n is not listed in Makefile \n"
1750	locat=source; exit
1751	else
1752
1753	# Default User-Interface von der Liste entfernen, falls Datei
1754	# ein User-Interface enthaelt
1755	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1756	# then
1757	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1758	# then
1759	# rm -rf user_interface.f90
1760	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1761	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1762	# printf "\n since a user-interface is found in file"
1763	# printf "\n \"$add_source_path/$dateiname\" \n"
1764	# sleep 3
1765	# else
1766	if [[ $found = false ]]
1767	then
1768	found=true
1769	printf "\n\n *** following user file(s) added to the"
1770	printf " files to be translated:\n "
1771	fi
1772	printf "$dateiname "
1773	sleep 0.5
1774	fi
1775	done
1776	[[ $found = true ]] && printf "\n"
1777	cd - > /dev/null
1778	fi
1779	fi
1780
1781
1782	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1783	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1784	if [[ $restart_run != true && -n $package_list ]]
1785	then
1786
1787	cd $source_path
1788
1789	for package in $package_list
1790	do
1791
1792	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1793
1794	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1795	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1796	# LIEFERT
1797	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1798
1799
1800	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1801	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1802	for source_list_name in $package_source_list
1803	do
1804	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1805	then
1806
1807	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1808	ending=`echo $source_list_name \| cut -f2 -d.`
1809	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1810	then
1811	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1812	source_list="$source_list $source_list_name"
1813	fi
1814	fi
1815	done
1816	done
1817
1818	cd - > /dev/null
1819	fi
1820
1821
1822	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1823	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1824	# if [[ "$restart_run" != true ]]
1825	# then
1826	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1827	# if [[ ! -f $makefile ]]
1828	# then
1829	# printf "\n +++ file \"$makefile\" does not exist"
1830	# locat=make; exit
1831	# else
1832	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1833	# fi
1834	# fi
1835
1836	fi # do_compile=true
1837
1838
1839	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1840	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1841	if [[ $do_compile = true ]]
1842	then
1843
1844	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1845	# ZUSAMMENSETZEN
1846	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1847	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1848	then
1849	cpp_options="${cpp_options},-D__ibm=__ibm"
1850	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1851	then
1852	cpp_options="$cpp_options -D__nec"
1853	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1854	then
1855	cpp_options="$cpp_options -D__lc"
1856	else
1857	cpp_options="$cpp_options -D__$localhost"
1858	fi
1859
1860	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1861	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1862	then
1863	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1864	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1865	else
1866	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1867	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1868	fi
1869
1870	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1871	if [[ -n $package_list ]]
1872	then
1873	for package in $package_list
1874	do
1875	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1876	then
1877	if [[ $package != "dvrp_graphics+1PE" ]]
1878	then
1879	cpp_options="${cpp_options},-D__$package=__$package"
1880	else
1881	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1882	export use_seperate_pe_for_dvrp_output=true
1883	fi
1884	else
1885	if [[ $package != "dvrp_graphics+1PE" ]]
1886	then
1887	cpp_options="$cpp_options -D__$package"
1888	else
1889	cpp_options="$cpp_options -D__dvrp_graphics"
1890	export use_seperate_pe_for_dvrp_output=true
1891	fi
1892	fi
1893	done
1894	fi
1895
1896	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1897	if [[ -n $cpp_opts ]]
1898	then
1899	for popts in $cpp_opts
1900	do
1901	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1902	then
1903	cpp_options="${cpp_options},-D__$popts=__$popts"
1904	else
1905	cpp_options="$cpp_options -D__$popts"
1906	fi
1907	done
1908	fi
1909
1910	else
1911
1912
1913	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1914	if [[ $do_remote = false ]]
1915	then
1916	if [[ ! -f $executable ]]
1917	then
1918	printf "\n +++ executable file: $executable"
1919	printf "\n does not exist"
1920	locat=executable; exit
1921	fi
1922	fi
1923	fi
1924
1925
1926	# JOBMODUS FESTSTELLEN
1927	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1928	then
1929	jobmo=BATCH
1930	else
1931	jobmo=INTERACTIVE
1932	fi
1933
1934
1935	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1936	# DURCH BENUTZER ANDERWEITIG VEREINBART
1937	if [[ "$compiler_name" = "" ]]
1938	then
1939
1940	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1941	locat=compiler_name; exit
1942
1943	fi
1944
1945
1946	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1947	[[ $localhost = necriam ]] && compiler_name=mpif90
1948
1949
1950
1951	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1952	kennung=$RANDOM
1953	if [[ "$tmp_user_catalog" = "" ]]
1954	then
1955	if [[ $localhost = ibmh ]]
1956	then
1957	tmp_user_catalog=$SCRATCH
1958	elif [[ $localhost = nech ]]
1959	then
1960	tmp_user_catalog=$WRKSHR
1961	else
1962	tmp_user_catalog=/tmp
1963	fi
1964	fi
1965	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1966
1967
1968	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1969	# BESTIMMEN
1970	if [[ "$tmp_data_catalog" = "" ]]
1971	then
1972	if [[ $localhost = ibmb ]]
1973	then
1974	tmp_data_catalog=$WORK/mrun_restart_data
1975	elif [[ $localhost = nech ]]
1976	then
1977	tmp_data_catalog=$WRKSHR/mrun_restart_data
1978	else
1979	tmp_data_catalog=/tmp/mrun_restart_data
1980	fi
1981	fi
1982
1983
1984	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1985	# ERSETZEN
1986	if [[ $do_remote = false && $do_compile = true ]]
1987	then
1988	eval fopts=\"$fopts\"
1989	eval lopts=\"$lopts\"
1990	fi
1991
1992
1993
1994	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1995	fopts="$fopts $netcdf_inc $dvr_inc"
1996	lopts="$lopts $netcdf_lib $dvr_lib"
1997	ROPTS="$ropts"
1998	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 \|\| $host = lck ) && -n $numprocs ]]
1999	then
2000	XOPT="-X $numprocs"
2001	fi
2002
2003
2004
2005	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2006	# GRAMM BENOETIGT
2007	done=false
2008	while [[ $done = false ]]
2009	do
2010	cputime=$cpumax
2011	if (( $cputime == 0 ))
2012	then
2013	if [[ $do_batch = true ]]
2014	then
2015	printf "\n +++ cpu-time is undefined"
2016	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2017	printf "\n >>> "
2018	read cputime 1>/dev/null 2>&1
2019	else
2020	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2021	fi
2022	else
2023	done=true
2024	fi
2025	cpumax=$cputime
2026	done
2027
2028	(( minuten = cputime / 60 ))
2029	(( sekunden = cputime - minuten * 60 ))
2030
2031
2032	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2033	if [[ $do_batch = true ]]
2034	then
2035	done=false
2036	while [[ $done = false ]]
2037	do
2038	if (( memory == 0 ))
2039	then
2040	printf "\n +++ memory demand is undefined"
2041	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2042	printf "\n >>> "
2043	read memory 1>/dev/null 2>&1
2044	else
2045	done=true
2046	fi
2047	done
2048	fi
2049
2050
2051	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2052	if [[ $do_remote = true && -z $remote_username ]]
2053	then
2054	while [[ -z $remote_username ]]
2055	do
2056	printf "\n +++ username on remote host \"$host\" is undefined"
2057	printf "\n >>> Please type username:"
2058	printf "\n >>> "
2059	read remote_username
2060	done
2061	mc="$mc -u$remote_username"
2062	fi
2063
2064
2065	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2066	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2067	then
2068	[[ "$mpilib" = "" ]] && export mpilib=mpt
2069	fi
2070
2071
2072
2073	###########################################################################
2074	# HEADER-AUSGABE
2075	###########################################################################
2076
2077
2078	calltime=$(date)
2079	printf "\n"
2080	# [[ $silent = false ]] && clear
2081	printf "#--------------------------------------------------------------# \n"
2082	printf "\| $version$calltime \| \n"
2083	printf "\| \| \n"
2084	spalte1="called on:"; spalte2=$localhost_realname
2085	printf "\| $spalte1$spalte2 \| \n"
2086	if [[ $local_compile = false ]]
2087	then
2088	if [[ $do_remote = true ]]
2089	then
2090	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2091	else
2092	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2093	fi
2094	else
2095	spalte1="compiling test only!"; spalte2=""
2096	fi
2097	printf "\| $spalte1$spalte2 \| \n"
2098	if [[ -n $numprocs ]]
2099	then
2100	spalte1="number of PEs:"; spalte2=$numprocs
2101	printf "\| $spalte1$spalte2 \| \n"
2102	fi
2103	if [[ -n $tasks_per_node ]]
2104	then
2105	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2106	printf "\| $spalte1$spalte2 \| \n"
2107	fi
2108	if [[ $threads_per_task != 1 ]]
2109	then
2110	spalte1="threads per task:"; spalte2="$threads_per_task"
2111	printf "\| $spalte1$spalte2 \| \n"
2112	fi
2113	printf "\| \| \n"
2114	if [[ $do_compile = true ]]
2115	then
2116	spalte1=cpp-directives:; spalte2=$cpp_options
2117	printf "\| $spalte1$spalte2 \| \n"
2118	zeile=$(echo "$cpp_options" \| cut -c41-)
2119	while [[ "$zeile" != "" ]]
2120	do
2121	spalte1=""
2122	spalte2=$zeile
2123	printf "\| $spalte1$spalte2 \| \n"
2124	zeile=$(echo "$zeile" \| cut -c41-)
2125	done
2126
2127	spalte1=compiler-options:; spalte2="$fopts"
2128	printf "\| $spalte1$spalte2 \| \n"
2129	zeile=$(echo "$fopts" \| cut -c41-)
2130	while [[ "$zeile" != "" ]]
2131	do
2132	spalte1=""
2133	spalte2=$zeile
2134	printf "\| $spalte1$spalte2 \| \n"
2135	zeile=$(echo "$zeile" \| cut -c41-)
2136	done
2137
2138	spalte1=linker-options:; spalte2=$lopts
2139	printf "\| $spalte1$spalte2 \| \n"
2140	zeile=$(echo "$lopts" \| cut -c41-)
2141	while [[ "$zeile" != "" ]]
2142	do
2143	spalte1=""
2144	spalte2=$zeile
2145	printf "\| $spalte1$spalte2 \| \n"
2146	zeile=$(echo "$zeile" \| cut -c41-)
2147	done
2148
2149	spalte1="main program":; spalte2=$mainprog
2150	printf "\| $spalte1$spalte2 \| \n"
2151	else
2152	spalte1=executable:; spalte2=$executable
2153	printf "\| $spalte1$spalte2 \| \n"
2154	fi
2155	printf "\| \| \n"
2156	spalte1="base name of files":; spalte2=$fname
2157	printf "\| $spalte1$spalte2 \| \n"
2158	if [[ $fname != $afname ]]
2159	then
2160	spalte1="base name of input files":; spalte2=$afname
2161	printf "\| $spalte1$spalte2 \| \n"
2162	fi
2163	spalte1="INPUT control list":; spalte2=$input_list
2164	printf "\| $spalte1$spalte2 \| \n"
2165	spalte1="OUTPUT control list":; spalte2=$output_list
2166	printf "\| $spalte1$spalte2 \| \n"
2167
2168	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2169	then
2170	spalte1="memory demand / PE":; spalte2="$memory MB"
2171	printf "\| $spalte1$spalte2 \| \n"
2172	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2173	printf "\| $spalte1$spalte2 \| \n"
2174	fi
2175
2176	if [[ $do_compile = true ]]
2177	then
2178	printf "\| \| \n"
2179	printf "\| Files to be compiled: \| \n"
2180	zeile=$source_list
2181	while [[ "$zeile" != "" ]]
2182	do
2183	spalte3=$zeile
2184	printf "\| $spalte3 \| \n"
2185	zeile=$(echo "$zeile" \| cut -c61-)
2186	done
2187	fi
2188	printf "#--------------------------------------------------------------#"
2189
2190
2191
2192	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2193	if [[ $do_trace = true ]]
2194	then
2195	(( i = 0 ))
2196	while (( i < iin ))
2197	do
2198	(( i = i + 1 ))
2199	if (( i == 1 ))
2200	then
2201	printf "\n\n >>> INPUT-file assignments:\n"
2202	fi
2203	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2204	done
2205	(( i = 0 ))
2206	while (( i < iout ))
2207	do
2208	(( i = i + 1 ))
2209	if (( i == 1 ))
2210	then
2211	printf "\n\n >>> OUTPUT-file assignments:\n"
2212	fi
2213	printf "\n ${localout[$i]} : ${pathout[$i]}"
2214	done
2215	(( i = 0 ))
2216	while (( i < iic ))
2217	do
2218	(( i = i + 1 ))
2219	if (( i == 1 ))
2220	then
2221	printf "\n\n >>> INPUT-commands:\n"
2222	fi
2223	printf "\n ${in_command[$i]}"
2224	done
2225	(( i = 0 ))
2226	while (( i < ioc ))
2227	do
2228	(( i = i + 1 ))
2229	if (( i == 1 ))
2230	then
2231	printf "\n\n >>> OUTPUT-commands:\n"
2232	fi
2233	printf "\n ${out_command[$i]}"
2234	done
2235	fi
2236
2237
2238	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2239	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2240	then
2241	antwort=dummy
2242	printf "\n\n"
2243	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2244	do
2245	printf " >>> everything o.k. (y/n) ? "
2246	read antwort
2247	done
2248	if [[ $antwort = n \|\| $antwort = N ]]
2249	then
2250	locat=user_abort; (( iec = 0 )); exit
2251	fi
2252	if [[ $do_batch = true ]]
2253	then
2254	printf " >>> batch-job will be created and submitted"
2255	else
2256	if [[ $local_compile = false ]]
2257	then
2258	printf " >>> MRUN will now continue to execute on this machine"
2259	else
2260	printf " >>> a test compilation will now be carried out on this machine"
2261	fi
2262	fi
2263	fi
2264
2265
2266
2267
2268	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2269	# CHENDE AKTIONEN DURCHGEFUEHRT
2270	if [[ $do_batch = false ]]
2271	then
2272
2273
2274	# TEMPORAEREN KATALOG ERZEUGEN
2275	mkdir -p $TEMPDIR
2276	chmod go+rx $TEMPDIR
2277	tmpcreate=true
2278
2279
2280	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2281	# TEMPORAERES VERZEICHNIS KOPIEREN
2282	if [[ $do_compile = true ]]
2283	then
2284
2285	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2286	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2287	if [[ $localhost = nech ]]
2288	then
2289	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2290	if mkdir -p $TEMPDIR_COMPILE
2291	then
2292	printf "\n *** \"$TEMPDIR_COMPILE\" "
2293	printf "\n is generated as temporary directory for cross compiling\n"
2294	else
2295	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2296	printf "\n needed for cross compilation failed"
2297	locat=compile
2298	exit
2299	fi
2300	else
2301	TEMPDIR_COMPILE=$TEMPDIR
2302	fi
2303
2304
2305	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2306	line=""
2307	grep "%depository_path" $config_file > tmp_mrun
2308	while read line
2309	do
2310	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2311	then
2312	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2313	then
2314	global_depository_path=`echo $line \| cut -d" " -s -f2`
2315	fi
2316	fi
2317	done < tmp_mrun
2318
2319	line=""
2320	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2321	while read line
2322	do
2323	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2324	then
2325	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2326	then
2327	local_depository_path=`echo $line \| cut -d" " -s -f2`
2328	fi
2329	fi
2330	done < tmp_mrun
2331
2332	if [[ "$local_depository_path" = "" ]]
2333	then
2334	if [[ "$global_depository_path" != "" ]]
2335	then
2336	local_depository_path=$global_depository_path
2337	else
2338	printf "\n\n +++ no depository path found in configuration file"
2339	printf "\n for local host \"$localhost\" "
2340	printf "\n please set \"\%depository_path\" in configuration file\n"
2341	locat=config_file; exit
2342	fi
2343	fi
2344	eval local_depository_path=$local_depository_path
2345	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2346	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2347
2348
2349	basename=`print $mainprog \| cut -f1 -d"."`
2350	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2351	if [[ ! -f $make_depository ]]
2352	then
2353	printf "\n"
2354	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2355	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2356	else
2357	cp $make_depository $TEMPDIR_COMPILE
2358	cd $TEMPDIR_COMPILE
2359	tar -xf $make_depository > /dev/null 2>&1
2360	cd - > /dev/null
2361	fi
2362
2363	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2364
2365	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2366	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2367	# MAKEFILE EINTRAGEN
2368	# cd $TEMPDIR_COMPILE
2369	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2370	# if [[ "$interface_file" != "" ]]
2371	# then
2372	# interface_file=`echo $interface_file \| cut -d"." -f1`
2373	# mv Makefile Makefile_old
2374	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2375	# fi
2376	# cd - > /dev/null
2377	else
2378	cp $executable ${TEMPDIR}/a.out
2379	fi
2380
2381
2382	# WECHSEL IN TEMPORAEREN KATALOG
2383	cd $TEMPDIR
2384	printf "\n *** changed to temporary directory: $TEMPDIR"
2385
2386
2387	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2388	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2389	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2390	# ERMITTELN
2391	(( i = 0 ))
2392	while (( i < iout ))
2393	do
2394	(( i = i + 1 ))
2395	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2396	then
2397	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2398	else
2399	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2400	fi
2401	done
2402
2403
2404	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2405	if [[ $do_compile = true ]]
2406	then
2407
2408
2409	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2410	printf "\n\n\n *** compilation starts \n$striche\n"
2411	printf " *** compilation with make using following options:\n"
2412	printf " make depository: $make_depository"
2413	printf " compilername: $compiler_name\n"
2414	printf " options: $fopts\n"
2415	printf " preprocessor-directives: $cpp_options \n"
2416	printf " linker-options: $lopts \n"
2417	printf " source code files: $source_list \n"
2418
2419	if [[ $localhost = nech ]]
2420	then
2421	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2422	cp $TEMPDIR_COMPILE/a.out .
2423	[[ $? != 0 ]] && compile_error=true
2424	rm -rf $TEMPDIR_COMPILE
2425	elif [[ $localhost = ibmh ]]
2426	then
2427	printf " compiler is called via ssh on \"plogin1\" \n"
2428	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2429	[[ ! -f a.out ]] && compile_error=true
2430	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2431	elif [[ $localhost = lcsgib ]]
2432	then
2433	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2434	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2435	[[ ! -f a.out ]] && compile_error=true
2436	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2437	elif [[ $localhost = lcsgih ]]
2438	then
2439	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2440	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load ifort/11.0.069; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2441	[[ ! -f a.out ]] && compile_error=true
2442	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2443	else
2444	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2445	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2446	fi
2447
2448	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2449	then
2450	printf "\n +++ error occured while compiling or linking"
2451	locat=compile
2452
2453	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2454	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2455	# then
2456	exit
2457	# else
2458	# locat=normal
2459	# fi
2460	else
2461	printf "$striche\n *** compilation finished \n"
2462	fi
2463	fi
2464
2465
2466	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2467	if [[ $local_compile = true ]]
2468	then
2469	cd $HOME
2470	rm -rf $TEMPDIR
2471	locat=local_compile; exit
2472	fi
2473
2474
2475	# BEREITSTELLEN DER INPUT-DATEIEN
2476	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2477	(( i = 0 ))
2478	while (( i < iin ))
2479	do
2480	(( i = i + 1 ))
2481	if (( i == 1 ))
2482	then
2483	printf "\n\n *** providing INPUT-files:\n$striche"
2484	fi
2485
2486
2487	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2488	if [[ "${transin[$i]}" = unavailable ]]
2489	then
2490	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2491	then
2492	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2493	printf "\n is not available!"
2494	else
2495	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2496	printf "\n is not available!"
2497	fi
2498	continue
2499	fi
2500
2501	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2502	files_for_pes=false; datentyp=file
2503	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2504	then
2505	files_for_pes=true; datentyp=directory
2506	actionin[$i]=""
2507	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2508	then
2509	actionin[$i]=""
2510	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2511	then
2512	files_for_pes=true; datentyp=directory
2513	actionin[$i]="ar"
2514	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2515	then
2516	actionin[$i]="ar"
2517	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2518	then
2519	files_for_pes=true; datentyp=directory
2520	actionin[$i]="fl"
2521	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2522	then
2523	actionin[$i]="fl"
2524	fi
2525
2526	if [[ $files_for_pes = true ]]
2527	then
2528	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2529	else
2530	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2531	fi
2532
2533	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2534	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2535	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2536	# SERVER ZU HOLEN
2537	if [[ "${actionin[$i]}" = fl ]]
2538	then
2539	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2540	if [[ $files_for_pes = false ]]
2541	then
2542	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2543	then
2544	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2545	got_tmp[$i]=true
2546	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2547	then
2548	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2549	printf "\n *** trying to use backup copy in \"$WORK\" "
2550	cp $WORK/${frelin[$i]} ${localin[$i]}
2551	else
2552	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2553	printf "\n or \"$tmp_data_catalog\" does not exist!"
2554	printf "\n *** trying to get copy from archive"
2555	actionin[$i]=ar
2556	fi
2557	else
2558	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2559	then
2560	mkdir ${localin[$i]}
2561	cd $tmp_data_catalog/${frelin[$i]}
2562	for file in $(ls *)
2563	do
2564	ln $file $TEMPDIR/${localin[$i]}
2565	done
2566	cd $TEMPDIR
2567	got_tmp[$i]=true
2568	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2569	then
2570	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2571	printf "\n *** trying to use backup copy in \"$WORK\" "
2572	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2573	else
2574	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2575	printf "\n or \"$tmp_data_catalog\" does not exist!"
2576	printf "\n *** trying to get copy from archive"
2577	actionin[$i]=ar
2578	fi
2579	fi
2580	fi
2581
2582
2583	# DATEI LIEGT AUF ARCHIV-SERVER
2584	if [[ "${actionin[$i]}" = ar ]]
2585	then
2586
2587	if [[ $files_for_pes = false ]]
2588	then
2589	printf "\n file will be restored from archive-system ($archive_system)!"
2590	else
2591	printf "\n directory will be restored from archive-system ($archive_system)!"
2592	fi
2593
2594	file_restored=false
2595
2596	if [[ $archive_system = asterix ]]
2597	then
2598	do_stagein=true
2599	(( stagein_anz = 0 ))
2600	while [[ $do_stagein = true ]]
2601	do
2602	if [[ $files_for_pes = false ]]
2603	then
2604	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2605	else
2606	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2607	fi
2608	cat STAGEIN_OUTPUT
2609	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2610	then
2611	file_restored=true
2612	do_stagein=false
2613	else
2614	(( stagein_anz = stagein_anz + 1 ))
2615	if (( stagein_anz == 10 ))
2616	then
2617	printf "\n +++ stagein stoped after 10 tries"
2618	locat=stage
2619	exit
2620	fi
2621	printf "\n +++ restoring from archive failed, trying again:"
2622	sleep 900
2623	fi
2624	done
2625	elif [[ $archive_system = DMF ]]
2626	then
2627	if [[ $files_for_pes = false ]]
2628	then
2629	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2630	locat=DMF
2631	exit
2632	else
2633	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2634	cp -r $ARCHIVE/${frelin[$i]} $PWD
2635	file_restored=true
2636	fi
2637	elif [[ $archive_system = tivoli ]]
2638	then
2639	if [[ $files_for_pes = false ]]
2640	then
2641	if [[ $localhost = ibmh ]]
2642	then
2643	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2644	else
2645	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2646	fi
2647	else
2648	(( inode = 0 ))
2649	while (( inode < nodes ))
2650	do
2651	if [[ $localhost = ibmh ]]
2652	then
2653	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2654	else
2655	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2656	fi
2657	(( inode = inode + 1 ))
2658	done
2659	fi
2660	file_restored=true
2661	elif [[ $archive_system = ut ]]
2662	then
2663	if [[ $files_for_pes = false ]]
2664	then
2665	cp $UT/${frelin[$i]} .
2666	else
2667	(( inode = 0 ))
2668	while (( inode < nodes ))
2669	do
2670	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2671	(( inode = inode + 1 ))
2672	done
2673	fi
2674	file_restored=true
2675	else
2676	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2677	locat=rearchive
2678	exit
2679	fi
2680
2681	if [[ $file_restored = true ]]
2682	then
2683
2684	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2685	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2686	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2687	if [[ $files_for_pes = false ]]
2688	then
2689	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2690	else
2691	mkdir $tmp_data_catalog/${frelin[$i]}
2692	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2693	fi
2694	got_tmp[$i]=true
2695
2696	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2697	mv ${frelin[$i]} ${localin[$i]}
2698
2699	fi
2700	fi
2701
2702
2703	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2704	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2705	then
2706
2707	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2708	then
2709
2710	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2711	printf "\n file will be provided for $numprocs processors"
2712	mkdir ${localin[$i]}
2713	ival=$numprocs
2714	(( ii = 0 ))
2715	while (( ii <= ival-1 ))
2716	do
2717	if (( ii < 10 ))
2718	then
2719	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2720	elif (( ii < 100 ))
2721	then
2722	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2723	elif (( ii < 1000 ))
2724	then
2725	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2726	else
2727	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2728	fi
2729	(( ii = ii + 1 ))
2730	done
2731
2732	else
2733
2734	if [[ $files_for_pes = true ]]
2735	then
2736
2737	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2738	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2739	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2740	# PER MOVE UMBENANNT WERDEN
2741	printf "\n providing $numprocs files for the respective processors"
2742	mkdir ${localin[$i]}
2743	if [[ $link_local_input = true ]]
2744	then
2745	printf " using ln -f\n"
2746	cd ${absnamein[$i]}
2747	for file in $(ls *)
2748	do
2749	ln -f $file ${localin[$i]}
2750	done
2751	cd $TEMPDIR
2752	fi
2753	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2754	if [[ ! -f "${localin[$i]}/_0000" ]]
2755	then
2756	if [[ $link_local_input = true ]]
2757	then
2758	printf " ln failed for .../_0000, using cp...\n"
2759	fi
2760	cp -r ${absnamein[$i]}/* ${localin[$i]}
2761	fi
2762
2763	else
2764	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2765	if [[ $link_local_input = true ]]
2766	then
2767	printf " using ln -f\n"
2768	ln -f ${absnamein[$i]} ${localin[$i]}
2769	fi
2770	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2771	if [[ ! -f "${localin[$i]}" ]]
2772	then
2773	if [[ $link_local_input = true ]]
2774	then
2775	printf " ln failed, using cp...\n"
2776	fi
2777	cp ${absnamein[$i]} ${localin[$i]}
2778	fi
2779	fi
2780	fi
2781	fi
2782
2783	done
2784	if (( i != 0 ))
2785	then
2786	printf "\n$striche\n *** all INPUT-files provided \n"
2787	fi
2788
2789
2790	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2791	(( i = 0 ))
2792	while (( i < iic ))
2793	do
2794	(( i = i + 1 ))
2795	if (( i == 1 ))
2796	then
2797	printf "\n\n *** execution of INPUT-commands:\n$striche"
2798	fi
2799	printf "\n >>> ${in_command[$i]}"
2800	eval ${in_command[$i]}
2801	if (( i == iic ))
2802	then
2803	printf "\n$striche\n"
2804	fi
2805	done
2806
2807
2808	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2809	cpurest=${cpumax}.
2810
2811
2812	# START DVR STREAMING SERVER
2813	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2814	then
2815	if [[ "$dvr_server" != "" ]]
2816	then
2817
2818	printf "\n\n *** preparing the dvr streaming server configuration file"
2819
2820	# Check, if a dvr server is already running
2821	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2822	if [[ "$running_dvrserver_id" != "" ]]
2823	then
2824
2825	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2826	printf "\n This server is used instead starting a new one!"
2827	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2828
2829	else
2830
2831	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2832	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2833	then
2834	cp ${PALM_BIN}/.dvrserver.config .
2835
2836	# Entering the BASEDIR, UID and GID into this file
2837	user_id=`id -u`
2838	group_id=`id -g`
2839	# & is needed as seperator, because TEMPDIR contains /
2840	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2841	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2842	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2843	mv .dvrserver.3 .dvrserver.config
2844	rm .dvrserver.1 .dvrserver.2
2845
2846	# Start dvr server in background, get his id and print on terminal
2847	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2848	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2849	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2850	local_dvrserver_running=.TRUE.
2851	else
2852	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2853	printf "\n \"$PALM_BIN\" "
2854	locat=dvr
2855	exit
2856	fi
2857
2858	fi
2859
2860	else
2861	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2862	fi
2863	fi
2864
2865
2866	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2867	# LESEN VON PALM)
2868	cat > ENVPAR << %%END%%
2869	&envpar run_identifier = '$fname', host = '$localhost',
2870	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2871	maximum_cpu_time_allowed = ${cpumax}.,
2872	revision = '$global_revision',
2873	local_dvrserver_running = $local_dvrserver_running /
2874
2875	%%END%%
2876
2877
2878	# PROGRAMMSTART
2879	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2880	PATH=$PATH:$TEMPDIR
2881
2882	# MPI debug option (argument checking, slows down execution due to increased latency)
2883	if [[ "$mpi_debug" = true ]]
2884	then
2885	export MPI_CHECK_ARGS=1
2886	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2887	fi
2888
2889	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2890	then
2891	if [[ "$ENVIRONMENT" = BATCH ]]
2892	then
2893	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2894	then
2895	printf "\n +++ debug is allowed in interactive mode only"
2896	locat=debug
2897	exit
2898	fi
2899	fi
2900	if [[ $localhost = decalpha ]]
2901	then
2902	dxladebug a.out
2903	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2904	then
2905
2906	# SETUP THE IBM MPI ENVIRONMENT
2907	export MP_SHARED_MEMORY=yes
2908	export AIXTHREADS_SCOPE=S
2909	export OMP_NUM_THREADS=$threads_per_task
2910	export AUTHSTATE=files
2911	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2912
2913	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2914	export MP_ADAPTER_USE=shared
2915	export MP_CPU_USE=multiple
2916	export MP_TIMEOUT=1200
2917
2918	unset MP_TASK_AFFINITY
2919
2920	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2921	#(( ii = 1 ))
2922	#while (( ii <= $numprocs ))
2923	#do
2924	# echo $localhost_realname >> hostfile
2925	# (( ii = ii + 1 ))
2926	#done
2927	#export MP_HOSTFILE=hostfile
2928
2929	if [[ "$LOADLBATCH" = yes ]]
2930	then
2931	totalview poe a.out $ROPTS
2932	else
2933	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2934	export TVDSVRLAUNCHCMD=ssh
2935	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2936	fi
2937	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2938	then
2939	# CURRENTLY NO DEBUGGER ON LCSGI
2940	if [[ $run_coupled_model = true ]]
2941	then
2942	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2943	locat=debug
2944	exit
2945	else
2946	echo "no_coupling" > runfile_atmos
2947	fi
2948	(( ii = $numprocs / $threads_per_task ))
2949	export OMP_NUM_THREADS=$threads_per_task
2950	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2951	if [[ $threads_per_task != 1 ]]
2952	then
2953	printf "\n threads per task: $threads_per_task"
2954	fi
2955	printf "\n\n"
2956	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2957	then
2958	# export MPI_LAUNCH_TIMEOUT=360
2959	if [[ "$totalview" = true ]]
2960	then
2961	printf "\n running totalview debugger"
2962	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2963	else
2964	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2965	fi
2966	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2967	then
2968	# ulimit -s 300000 # A too large stack size causes problems
2969	# export MV2_NUM_PORTS=2
2970	# export MV2_CPU_MAPPING=0:1:2:3
2971	if [[ "$totalview" = true ]]
2972	then
2973	printf "\n running totalview debugger"
2974	mpiexec -tv ./a.out $ROPTS < runfile_atmos
2975	else
2976	mpiexec ./a.out $ROPTS < runfile_atmos
2977	fi
2978	fi
2979	else
2980	printf "\n +++ no debug available on \"$localhost\" "
2981	printf "\n or not implemented in mrun so far"
2982	locat=debug
2983	exit
2984	fi
2985	else
2986	if [[ -n $numprocs ]]
2987	then
2988	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2989	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2990	then
2991	# SETUP THE IBM MPI ENVIRONMENT
2992	if [[ $host != ibmh ]]
2993	then
2994	export MP_SHARED_MEMORY=yes
2995	export AIXTHREAD_SCOPE=S
2996	export OMP_NUM_THREADS=$threads_per_task
2997	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2998	export AUTHSTATE=files
2999	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3000	# export MP_PRINTENV=yes
3001
3002	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3003	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3004	export MP_WAIT_MODE=poll
3005	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3006	fi
3007	if [[ "$LOADLBATCH" = yes ]]
3008	then
3009	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3010	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3011	then
3012	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3013	else
3014	if [[ $run_coupled_model = false ]]
3015	then
3016	if [[ "$ocean_file_appendix" = true ]]
3017	then
3018	echo "precursor_ocean" > runfile_atmos
3019	else
3020	echo "precursor_atmos" > runfile_atmos
3021	fi
3022	else
3023	(( iia = $numprocs_atmos / $threads_per_task ))
3024	(( iio = $numprocs_ocean / $threads_per_task ))
3025	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3026	printf "\n using $coupled_mode coupling"
3027	printf "\n\n"
3028	echo "coupled_run $iia $iio" > runfile_atmos
3029	fi
3030	poe ./a.out $ROPTS < runfile_atmos
3031	fi
3032	else
3033	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3034	then
3035	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3036	elif [[ $localhost = ibmy ]]
3037	then
3038	if [[ -f $hostfile ]]
3039	then
3040	cp $hostfile hostfile
3041	else
3042	(( ii = 1 ))
3043	while (( ii <= $numprocs ))
3044	do
3045	echo $localhost_realname >> hostfile
3046	(( ii = ii + 1 ))
3047	done
3048	fi
3049	export MP_HOSTFILE=hostfile
3050	if [[ $run_coupled_model = false ]]
3051	then
3052	if [[ "$ocean_file_appendix" = true ]]
3053	then
3054	echo "precursor_ocean" > runfile_atmos
3055	else
3056	echo "precursor_atmos" > runfile_atmos
3057	fi
3058	else
3059	(( iia = $numprocs_atmos / $threads_per_task ))
3060	(( iio = $numprocs_ocean / $threads_per_task ))
3061	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3062	printf "\n using $coupled_mode coupling"
3063	printf "\n\n"
3064	echo "coupled_run $iia $iio" > runfile_atmos
3065	fi
3066	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3067
3068	else
3069	if [[ "$host_file" = "" ]]
3070	then
3071	printf "\n +++ no hostfile given in configuration file"
3072	locat=config_file
3073	exit
3074	else
3075	eval host_file=$host_file
3076	fi
3077	export MP_HOSTFILE=$host_file
3078	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3079	fi
3080	fi
3081	elif [[ $host = nech \|\| $host = necriam ]]
3082	then
3083	(( ii = nodes ))
3084	if [[ $ii = 1 ]]
3085	then
3086	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3087	export MPIPROGINF=YES
3088	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3089	echo "*** execution on single node with mpirun"
3090	mpirun -np $numprocs ./a.out $ROPTS
3091	else
3092	(( i = 0 ))
3093	while (( i < ii ))
3094	do
3095	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3096	(( i = i + 1 ))
3097	done
3098
3099	echo "#!/bin/sh" > mpi_exec_shell
3100	echo " " >> mpi_exec_shell
3101	echo "set -u" >> mpi_exec_shell
3102	echo "F_ERRCNT=0" >> mpi_exec_shell
3103	echo "MPIPROGINV=YES" >> mpi_exec_shell
3104	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3105	echo "cpurest=$cpurest" >> mpi_exec_shell
3106	echo "fname=$fname" >> mpi_exec_shell
3107	echo "localhost=$localhost" >> mpi_exec_shell
3108	echo "return_addres=$return_addres" >> mpi_exec_shell
3109	echo "return_username=$return_username" >> mpi_exec_shell
3110	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3111	echo "write_binary=$write_binary" >> mpi_exec_shell
3112	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3113	echo " " >> mpi_exec_shell
3114	echo "export F_ERRCNT" >> mpi_exec_shell
3115	echo "export MPIPROGINV" >> mpi_exec_shell
3116	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3117	echo "export cpurest" >> mpi_exec_shell
3118	echo "export fname" >> mpi_exec_shell
3119	echo "export localhost" >> mpi_exec_shell
3120	echo "export return_addres" >> mpi_exec_shell
3121	echo "export return_username" >> mpi_exec_shell
3122	echo "export tasks_per_node" >> mpi_exec_shell
3123	echo "export write_binary" >> mpi_exec_shell
3124	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3125	echo " " >> mpi_exec_shell
3126	echo "exec ./a.out" >> mpi_exec_shell
3127
3128	chmod u+x mpi_exec_shell
3129	export MPIPROGINF=YES
3130	mpirun -f multinode_config &
3131	wait
3132
3133	fi
3134	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3135	then
3136
3137	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3138	# DOES NOT EXIST
3139	if [[ $host != lcsgih && $host != lcsgib ]]
3140	then
3141	if [[ -f $hostfile ]]
3142	then
3143	cp $hostfile hostfile
3144	else
3145	(( ii = 1 ))
3146	while (( ii <= $numprocs / $threads_per_task ))
3147	do
3148	echo $localhost_realname >> hostfile
3149	(( ii = ii + 1 ))
3150	done
3151	fi
3152	eval zeile=\"`head -n $ii hostfile`\"
3153	printf "\n *** running on: $zeile"
3154	fi
3155
3156	(( ii = $numprocs / $threads_per_task ))
3157	export OMP_NUM_THREADS=$threads_per_task
3158	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3159	if [[ $threads_per_task != 1 ]]
3160	then
3161	printf "\n threads per task: $threads_per_task"
3162	fi
3163	if [[ $run_coupled_model = false ]]
3164	then
3165	if [[ "$ocean_file_appendix" = true ]]
3166	then
3167	echo "precursor_ocean" > runfile_atmos
3168	else
3169	echo "precursor_atmos" > runfile_atmos
3170	fi
3171	printf "\n\n"
3172	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3173	then
3174	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3175	then
3176	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3177	# export MPI_DSM_DISTRIBUTE=1
3178	# MPI_DSM_CPULIST: pin MPI processes to cores
3179	if [[ $use_openmp = false ]]
3180	then
3181	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3182	fi
3183	# MPI_IB_RAILS: use both IB rails on ICE2
3184	export MPI_BUFS_PER_HOST=512
3185	export MPI_IB_RAILS=2
3186	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3187	export MPI_CONNECTIONS_THRESHOLD=8192
3188	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3189	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3190	then
3191	export MV2_NUM_PORTS=2
3192	# The default setting of MV2_CPU_MAPPING gives best results
3193	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3194	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3195	fi
3196	elif [[ $host = lcxt4 ]]
3197	then
3198	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3199	else
3200	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3201	fi
3202	else
3203
3204	# currently there is no full MPI-2 support on ICE and XT4
3205	(( iia = $numprocs_atmos / $threads_per_task ))
3206	(( iio = $numprocs_ocean / $threads_per_task ))
3207	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3208	printf "\n using $coupled_mode coupling"
3209	printf "\n\n"
3210
3211	if [[ $coupled_mode = "mpi2" ]]
3212	then
3213	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3214	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3215	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3216	then
3217
3218	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3219	then
3220	# export MPI_LAUNCH_TIMEOUT=360
3221	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3222	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3223	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3224	then
3225	# ulimit -s 300000 # A too large stack size causes problems
3226	# export MV2_NUM_PORTS=2
3227	# export MV2_CPU_MAPPING=0:1:2:3
3228	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3229	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3230	fi
3231
3232	elif [[ $host = lcxt4 ]]
3233	then
3234
3235	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3236	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3237
3238	else
3239	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3240	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3241	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3242	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3243	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3244	fi
3245	wait
3246
3247	else
3248
3249	echo "coupled_run $iia $iio" > runfile_atmos
3250	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3251	then
3252
3253	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3254	then
3255	# export MPI_LAUNCH_TIMEOUT=360
3256	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3257	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3258	then
3259	# ulimit -s 300000 # A too large stack size causes problems
3260	# export MV2_NUM_PORTS=2
3261	# export MV2_CPU_MAPPING=0:1:2:3
3262	mpiexec ./a.out $ROPTS < runfile_atmos
3263	fi
3264
3265	elif [[ $host = lcxt4 ]]
3266	then
3267
3268	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3269
3270	elif [[ $host = lck ]]
3271	then
3272	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3273	fi
3274	wait
3275	fi
3276
3277	# if [[ $scirocco = true ]]
3278	# then
3279	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3280	# else
3281	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3282	# fi
3283	fi
3284	elif [[ $host = decalpha ]]
3285	then
3286	dmpirun -np $numprocs a.out $ROPTS
3287	elif [[ $host = lctit ]]
3288	then
3289	export runfile=runfile.$kennung
3290
3291	echo "cd $PWD" > $runfile
3292	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3293	echo "export cpurest=$cpurest" >> $runfile
3294	echo "export fname=$fname" >> $runfile
3295	echo "export localhost=$localhost" >> $runfile
3296	echo "export return_addres=$return_addres" >> $runfile
3297	echo "export return_username=$return_username" >> $runfile
3298	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3299	echo "export write_binary=$write_binary" >> $runfile
3300	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3301	echo "./a.out" >> $runfile
3302	chmod u+x $runfile
3303
3304	if [[ "$QUEUE" = interactive ]]
3305	then
3306	mpirun -np $numprocs a.out $ROPTS
3307	else
3308	(( mem_tsubame = $memory / 1024.0 ))
3309	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3310	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3311	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3312	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3313	fi
3314
3315	rm $runfile
3316	else
3317	mpprun -n $numprocs a.out $ROPTS
3318	fi
3319	[[ $? != 0 ]] && execution_error=true
3320
3321
3322	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3323	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3324	then
3325	apprentice
3326	fi
3327	else
3328	a.out $ROPTS
3329	fi
3330	fi
3331	if [[ $? != 0 \|\| $execution_error = true ]]
3332	then
3333
3334	# ABBRUCH BEI LAUFZEITFEHLER
3335	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3336	printf "\n +++ runtime error occured"
3337	locat=execution
3338	exit
3339	else
3340	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3341	printf "\n$striche\n *** execution finished \n"
3342
3343	# Stop the dvr streaming server and process the dvr output in order
3344	# to create dvrs- and html-files containing all streams
3345	if [[ "$dvrserver_id" != "" ]]
3346	then
3347	kill $dvrserver_id
3348	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3349
3350	# If there is a directory, data have been output by the
3351	# streaming server. Otherwise, user has chosen dvrp_output=local
3352	if [[ -d DATA_DVR ]]
3353	then
3354
3355	# Add the current dvr configuration file to the dvr output
3356	# directory
3357	cp .dvrserver.config DATA_DVR
3358
3359	# Process the dvr output (option -s for also generating
3360	# sequence mode data)
3361	process_dvr_output -d DATA_DVR -f $fname -s
3362
3363	else
3364
3365	# Process the local output
3366	process_dvr_output -l -d DATA_DVR -f $fname
3367
3368	fi
3369
3370	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3371	then
3372
3373	# Process dvr output generated in local mode (dvrp_output=local)
3374	process_dvr_output -l -d DATA_DVR -f $fname
3375
3376	fi
3377	fi
3378
3379
3380
3381	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3382	(( i = 0 ))
3383	while (( i < ioc ))
3384	do
3385	(( i = i + 1 ))
3386	if (( i == 1 ))
3387	then
3388	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3389	fi
3390	printf "\n >>> ${out_command[$i]}"
3391	eval ${out_command[$i]}
3392	if (( i == ioc ))
3393	then
3394	printf "\n$striche\n"
3395	fi
3396	done
3397
3398
3399	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3400	if [[ $do_trace = true ]]
3401	then
3402	printf "\n\n"
3403	ls -al
3404	fi
3405
3406
3407
3408	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3409	(( i = 0 ))
3410	while (( i < iout ))
3411	do
3412	(( i = i + 1 ))
3413	if (( i == 1 ))
3414	then
3415	printf "\n\n *** saving OUTPUT-files:\n$striche"
3416	fi
3417
3418	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3419	files_for_pes=false; filetyp=file
3420	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3421	then
3422	files_for_pes=true; filetyp=directory
3423	actionout[$i]=""
3424	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3425	then
3426	actionout[$i]=""
3427	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3428	then
3429	files_for_pes=true; filetyp=directory
3430	actionout[$i]="ar"
3431	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3432	then
3433	actionout[$i]="ar"
3434	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3435	then
3436	files_for_pes=true; filetyp=directory
3437	actionout[$i]="fl"
3438	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3439	then
3440	actionout[$i]="fl"
3441	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3442	then
3443	files_for_pes=true; filetyp=directory
3444	actionout[$i]="tr"
3445	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3446	then
3447	actionout[$i]="tr"
3448	fi
3449
3450	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3451	then
3452	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3453	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3454	then
3455	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3456	else
3457
3458
3459	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3460	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3461	# REMOTE-RECHNUNGEN
3462	if [[ "${actionout[$i]}" = tr ]]
3463	then
3464	if [[ $localhost != $fromhost ]]
3465	then
3466	if [[ $files_for_pes = false ]]
3467	then
3468	cps=""
3469	cst=""
3470	else
3471	cps=-c
3472	cst="/"
3473	fi
3474	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3475	then
3476
3477	# TRANSFER IN EIGENSTAENDIGEM JOB
3478	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3479	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3480	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3481	if [[ $files_for_pes = false ]]
3482	then
3483	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3484	else
3485	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3486	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3487	fi
3488
3489	echo "set -x" > transfer_${localout[$i]}
3490	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3491
3492	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3493	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3494	printf "\n or higher cycle\n"
3495	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3496
3497	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3498
3499	if [[ $localhost = nech ]]
3500	then
3501	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3502	else
3503	if [[ "$LOGNAME" = b323013 ]]
3504	then
3505	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3506	else
3507	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3508	fi
3509	fi
3510
3511	else
3512
3513	# TRANSFER INNERHALB DIESES JOBS
3514	transfer_failed=false
3515	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3516	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3517	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3518	[[ $? != 0 ]] && transfer_failed=true
3519
3520	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3521	# LOKALER MASCHINE ANLEGEN
3522	if [[ $transfer_failed = true ]]
3523	then
3524	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3525	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3526
3527	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3528	# ANLEGEN.
3529	eval local_catalog=${pathout[$i]}
3530	if [[ ! -d $local_catalog ]]
3531	then
3532	printf " *** local directory does not exist. Trying to create:\n"
3533	printf " $local_catalog \n"
3534	mkdir -p $local_catalog
3535	fi
3536	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3537	transfer_problems=true
3538	fi
3539	fi
3540	else
3541
3542	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3543	actionout[$i]=""
3544	fi
3545	fi
3546
3547
3548	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3549	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3550	# REMOTE-RECHNUNGEN
3551	if [[ "${actionout[$i]}" = tra ]]
3552	then
3553	if [[ $localhost != $fromhost ]]
3554	then
3555	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3556	then
3557
3558	# TRANSFER IN EIGENSTAENDIGEM JOB
3559	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3560	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3561	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3562	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3563
3564	echo "set -x" > transfer_${localout[$i]}
3565	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3566
3567	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3568	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3569	printf "\n or higher cycle\n"
3570	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3571
3572	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3573
3574	if [[ $localhost = nech ]]
3575	then
3576	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3577	else
3578	if [[ $LOGNAME = b323013 ]]
3579	then
3580	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3581	else
3582	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3583	fi
3584	fi
3585
3586	else
3587
3588	# TRANSFER INNERHALB DIESES JOBS
3589	transfer_failed=false
3590	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3591	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3592	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3593	[[ $? != 0 ]] && transfer_failed=true
3594
3595	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3596	# LOKALER MASCHINE ANLEGEN
3597	if [[ $transfer_failed = true ]]
3598	then
3599	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3600	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3601
3602	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3603	# ANLEGEN
3604	eval local_catalog=${pathout[$i]}
3605	if [[ ! -d $local_catalog ]]
3606	then
3607	printf " *** local directory does not exist. Trying to create:\n"
3608	printf " $local_catalog \n"
3609	mkdir -p $local_catalog
3610	fi
3611
3612	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3613	transfer_problems=true
3614	fi
3615	fi
3616	else
3617
3618	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3619	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3620	actionout[$i]=a
3621	fi
3622	fi
3623
3624
3625	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3626	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3627	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3628	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3629	if [[ "${actionout[$i]}" = fl ]]
3630	then
3631	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3632	chmod g+rx $tmp_data_catalog
3633	if [[ $files_for_pes = false ]]
3634	then
3635	printf "\n >>> OUTPUT: ${localout[$i]} to"
3636	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3637	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3638	else
3639	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3640	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3641	mkdir $tmp_data_catalog/${frelout[$i]}
3642	cd ${localout[$i]}
3643	for file in $(ls *)
3644	do
3645	ln -f $file $tmp_data_catalog/${frelout[$i]}
3646	done
3647	cd $TEMPDIR
3648	fi
3649
3650
3651	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3652	if [[ $store_on_archive_system = true ]]
3653	then
3654
3655	if [[ $archive_system = asterix ]]
3656	then
3657	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3658	if [[ $files_for_pes = false ]]
3659	then
3660	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3661	else
3662	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3663	fi
3664	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3665	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3666	echo "then" >> archive_${frelout[$i]}
3667	echo " do_stageout=false" >> archive_${frelout[$i]}
3668	echo "else" >> archive_${frelout[$i]}
3669	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3670	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3671	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3672	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3673	if [[ $files_for_pes = false ]]
3674	then
3675	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3676	else
3677	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3678	fi
3679	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3680	echo "fi" >> archive_${frelout[$i]}
3681	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3682	elif [[ $archive_system = DMF ]]
3683	then
3684	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3685	if [[ $files_for_pes = false ]]
3686	then
3687	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3688	locat=DMF
3689	exit
3690	else
3691	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3692	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3693	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3694	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3695	fi
3696	elif [[ $archive_system = tivoli ]]
3697	then
3698	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3699	if [[ $files_for_pes = false ]]
3700	then
3701	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3702	echo "set -x" >> archive_${frelout[$i]}
3703	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3704	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3705	else
3706
3707	echo "set -x" >> archive_${frelout[$i]}
3708	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3709	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3710	cd $tmp_data_catalog
3711	all_files=`ls -1 ${frelout[$i]}/*`
3712	cd - > /dev/null
3713	(( inode = 0 ))
3714	(( tp1 = tasks_per_node + 1 ))
3715	while (( inode < nodes ))
3716	do
3717	# echo "*** all_files = \"$all_files\" "
3718	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3719	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3720	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3721	# echo "*** files = \"$files\" "
3722	# echo "*** all_files = \"$all_files\" "
3723	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3724	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3725	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3726	(( inode = inode + 1 ))
3727	done
3728	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3729	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3730	fi
3731	elif [[ $archive_system = ut ]]
3732	then
3733	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3734	if [[ $files_for_pes = false ]]
3735	then
3736	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3737	echo "set -x" >> archive_${frelout[$i]}
3738	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3739	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3740	else
3741
3742	echo "set -x" >> archive_${frelout[$i]}
3743	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3744	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3745	cd $tmp_data_catalog
3746	all_files=`ls -1 ${frelout[$i]}/*`
3747	cd - > /dev/null
3748	(( inode = 0 ))
3749	(( tp1 = tasks_per_node + 1 ))
3750	while (( inode < nodes ))
3751	do
3752	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3753	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3754	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3755	(( inode = inode + 1 ))
3756	done
3757	fi
3758	elif [[ $archive_system = none ]]
3759	then
3760	printf " +++ archiving on $localhost not available!\n"
3761	fi
3762
3763	if [[ $archive_system != none ]]
3764	then
3765	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3766	then
3767	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3768	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3769	elif [[ $localhost = nech ]]
3770	then
3771	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3772	fi
3773	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3774	fi
3775	else
3776	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3777	fi
3778
3779
3780	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3781	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3782	if [[ $files_for_pes = false ]]
3783	then
3784	cat /dev/null > ${pathout[$i]}
3785	else
3786	mkdir -p ${pathout[$i]}
3787	fi
3788
3789	fi
3790
3791
3792	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3793	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3794	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3795	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3796	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3797	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3798	if [[ "${actionout[$i]}" = ar ]]
3799	then
3800	if [[ $files_for_pes = false ]]
3801	then
3802	printf "\n >>> OUTPUT: ${localout[$i]} to"
3803	printf "\n ${pathout[$i]}"
3804	printf "\n File will be copied to archive-system ($archive_system) !\n"
3805	else
3806	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3807	printf "\n ${pathout[$i]}"
3808	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3809	fi
3810	mv ${localout[$i]} ${frelout[$i]}
3811
3812	file_saved=false
3813
3814	if [[ $archive_system = asterix ]]
3815	then
3816	do_stageout=true
3817	(( stageout_anz = 0 ))
3818	while [[ $do_stageout = true ]]
3819	do
3820	if [[ $files_for_pes = false ]]
3821	then
3822	stageout ${frelout[$i]} > STAGE_OUTPUT
3823	else
3824	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3825	fi
3826	cat STAGE_OUTPUT
3827	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3828	then
3829	file_saved=true
3830	do_stageout=false
3831	else
3832	if [[ $files_for_pes = false ]]
3833	then
3834	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3835	else
3836	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3837	fi
3838	(( stageout_anz = stageout_anz + 1 ))
3839	if (( stageout_anz == 10 ))
3840	then
3841	printf "\n +++ stoped after 10 unsuccessful tries!"
3842	archive_save=false
3843	do_stageout=false
3844	else
3845	printf "\n *** new try to store on archive after 15 min:"
3846	sleep 900
3847	fi
3848	fi
3849	done
3850	elif [[ $archive_system = DMF ]]
3851	then
3852	if [[ $files_for_pes = false ]]
3853	then
3854	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3855	locat=DMF
3856	exit
3857	else
3858	rm -rf $ARCHIVE/${frelout[$i]}
3859	cp -r ${frelout[$i]} $ARCHIVE
3860	fi
3861	file_saved=true
3862	elif [[ $archive_system = tivoli ]]
3863	then
3864	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3865	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3866	# GELEGT WERDEN
3867	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3868	chmod g+rx $tmp_data_catalog
3869	if [[ $files_for_pes = false ]]
3870	then
3871	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3872	else
3873	mkdir $tmp_data_catalog/${frelout[$i]}
3874	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3875	fi
3876
3877	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3878	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3879	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3880	if [[ $files_for_pes = false ]]
3881	then
3882	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3883	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3884	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3885	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3886	else
3887	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3888	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3889	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3890	fi
3891
3892	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3893	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3894	file_saved=true
3895
3896	elif [[ $archive_system = ut ]]
3897	then
3898	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3899	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3900	# GELEGT WERDEN
3901	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3902	chmod g+rx $tmp_data_catalog
3903	if [[ $files_for_pes = false ]]
3904	then
3905	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3906	else
3907	mkdir $tmp_data_catalog/${frelout[$i]}
3908	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3909	fi
3910
3911	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3912	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3913	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3914	if [[ $files_for_pes = false ]]
3915	then
3916	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3917	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3918	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3919	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3920	else
3921	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3922	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3923	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3924	fi
3925
3926	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3927	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3928	file_saved=true
3929
3930	else
3931	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3932	archive_save=false
3933	fi
3934	if [[ $file_saved = true ]]
3935	then
3936	if [[ $files_for_pes = false ]]
3937	then
3938	cat /dev/null > ${pathout[$i]}
3939	else
3940	mkdir -p ${pathout[$i]}
3941	fi
3942	fi
3943	fi
3944
3945	# APPEND AUF LOKALER MASCHINE
3946	if [[ "${actionout[$i]}" = "a" ]]
3947	then
3948	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3949	cat ${localout[$i]} >> ${pathout[$i]}
3950	fi
3951
3952	# KOPIEREN AUF LOKALER MASCHINE
3953	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3954	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3955	then
3956
3957	# KOPIEREN AUF EINPROZESSORMASCHINE
3958	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3959	then
3960	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3961	if [[ $link_local_output = true ]]
3962	then
3963	printf " using ln -f\n"
3964	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3965	fi
3966	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3967	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3968	then
3969	if [[ $link_local_output = true ]]
3970	then
3971	printf " ln failed, using cp...\n"
3972	fi
3973	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3974	fi
3975	else
3976	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3977	if [[ $link_local_output = true ]]
3978	then
3979	printf " using ln -f\n"
3980	ln -f ${localout[$i]} ${pathout[$i]}
3981	fi
3982	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3983	if [[ ! -f "${pathout[$i]}" ]]
3984	then
3985	if [[ $link_local_output = true ]]
3986	then
3987	printf " ln failed, using cp...\n"
3988	fi
3989	cp ${localout[$i]} ${pathout[$i]}
3990	fi
3991	fi
3992
3993	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3994	then
3995
3996	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3997	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3998	# WIRD DANN KOPIERT
3999	# PER MOVE UMBENANNT WERDEN
4000	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4001	if [[ $link_local_output = true ]]
4002	then
4003	printf " using ln -f\n"
4004	mkdir ${pathout[$i]}
4005	cd ${localout[$i]}
4006	for file in $(ls *)
4007	do
4008	ln -f $file ${pathout[$i]}
4009	done
4010	cd $TEMPDIR
4011	fi
4012	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4013	if [[ ! -f "${pathout[$i]}/_0000" ]]
4014	then
4015	if [[ $link_local_output = true ]]
4016	then
4017	printf " ln failed for .../_0000, using cp...\n"
4018	fi
4019	cp -r ${localout[$i]} ${pathout[$i]}
4020	fi
4021
4022	fi
4023	fi
4024	done
4025	if (( i != 0 ))
4026	then
4027	if [[ $transfer_problems = true ]]
4028	then
4029	printf "\n$striche\n *** OUTPUT-files saved"
4030	printf "\n +++ WARNING: some data transfers failed! \n"
4031	else
4032	printf "\n$striche\n *** all OUTPUT-files saved \n"
4033	fi
4034	fi
4035
4036
4037	# EVENTUELL FOLGEJOB STARTEN
4038	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4039	if [[ -f CONTINUE_RUN ]]
4040	then
4041
4042	if [[ $archive_save = true ]]
4043	then
4044
4045	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4046	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4047	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4048	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4049	# HANDEN
4050	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4051	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4052	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4053	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4054	then
4055	mc=`echo $mc \| sed 's/#/f/g'`
4056	fi
4057
4058
4059	# JOB STARTEN
4060	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4061	echo " $mc"
4062	printf "\n$striche\n"
4063	if [[ $localhost != $fromhost ]]
4064	then
4065
4066	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4067	then
4068	echo "*** ssh will be used to initiate restart-runs!"
4069	echo " return_addres=\"$return_addres\" "
4070	echo " return_username=\"$return_username\" "
4071	if [[ $return_addres = 172.20.25.41 ]]
4072	then
4073	# WORKAROUND AUF SCIROCCO AM TIT
4074	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4075	elif [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4076	then
4077	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export LD_LIBRARY_PATH=\$LD_LIBRARY_PATH:/muksoft/packages/intel/Compiler/11.0/083/lib/intel64/;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4078	else
4079	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4080	fi
4081	else
4082	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4083	locat=restart; exit
4084	fi
4085
4086	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4087	# DER AKTUELLE JOB ENDET
4088	sleep 30
4089
4090	else
4091
4092	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4093	# RUFEN WERDEN, AUSSER AUF lcfimm
4094	cd $LOCAL_PWD
4095	if [[ $localhost = lcfimm ]]
4096	then
4097	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4098	else
4099	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4100	fi
4101	cd - > /dev/null
4102	fi
4103	printf "\n$striche\n *** restart-run initiated \n"
4104
4105
4106	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4107	# GEHOLT WORDEN SIND, LOESCHEN
4108	(( i = 0 ))
4109	while (( i < iin ))
4110	do
4111	(( i = i + 1 ))
4112	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4113	then
4114	rm -r $tmp_data_catalog/${frelin[$i]}
4115	fi
4116	done
4117
4118	else
4119
4120	printf "\n +++ no restart-run possible, since errors occured"
4121	printf "\n during the archive process"
4122	fi
4123
4124	fi
4125
4126
4127
4128	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4129	if [[ "$email_notification" != "none" ]]
4130	then
4131
4132	if [[ $localhost != $fromhost ]]
4133	then
4134	if [[ -f CONTINUE_RUN ]]
4135	then
4136	echo "PALM restart run necessary" > email_text
4137	echo "description header of actual run:" >> email_text
4138	cat CONTINUE_RUN >> email_text
4139	echo "mrun-command to restart:" >> email_text
4140	echo "$mc" >> email_text
4141	else
4142	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4143	fi
4144	mail $email_notification < email_text
4145	printf "\n *** email notification sent to \"$email_notification\" "
4146	fi
4147	fi
4148
4149
4150
4151	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4152	cd $HOME
4153	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4154
4155	else
4156
4157
4158	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4159	# CHENDE AKTIONEN DURCHGEFUEHRT
4160
4161	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4162	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4163	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4164	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4165	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4166	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4167	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4168	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4169	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4170	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4171	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4172	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4173	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4174	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4175	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4176	if [[ $use_openmp = true ]]
4177	then
4178	mrun_com=${mrun_com}" -O"
4179	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4180	else
4181	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4182	fi
4183	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4184	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4185	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4186	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4187	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4188	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4189	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4190	if [[ $do_remote = true ]]
4191	then
4192	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4193	fi
4194
4195
4196	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4197	jobfile=jobfile.$RANDOM
4198
4199
4200	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4201	echo "mkdir $TEMPDIR" >> $jobfile
4202	echo "cd $TEMPDIR" >> $jobfile
4203
4204
4205	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4206	if [[ $do_trace = true ]]
4207	then
4208	echo "set -x" >> $jobfile
4209	else
4210	echo "set +vx" >> $jobfile
4211	fi
4212
4213
4214	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4215	# DATEI FUER DEN JOB
4216	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4217	then
4218
4219	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4220	# KOPIEREN
4221	if [[ $restart_run != true ]]
4222	then
4223	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4224	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4225	fi
4226
4227	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4228	echo "set -x" >> $jobfile
4229	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4230	echo "export SOURCES_COMPLETE=true" >> $jobfile
4231
4232	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4233	# ARBEITSVERZEICHNIS VERSCHIEBEN
4234	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4235	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4236	echo "execute_mrun=true" >> $jobfile
4237	echo " " >> $jobfile
4238
4239	else
4240
4241	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4242	# SOWIE GEGEBENENFALLS DES MAKEFILES
4243	if [[ $do_compile = true ]]
4244	then
4245
4246	source_catalog=SOURCES_FOR_RUN_$fname
4247
4248	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4249	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4250	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4251	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4252	echo "export SOURCES_COMPLETE=true" >> $jobfile
4253	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4254
4255	for filename in $source_list
4256	do
4257	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4258	echo "cat > $filename << \"%END%\"" >> $jobfile
4259	cat $source_catalog/$filename >> $jobfile
4260	echo " " >> $jobfile
4261	echo "%END%" >> $jobfile
4262	echo " " >> $jobfile
4263	done
4264
4265	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4266	echo "cat > Makefile << \"%END%\"" >> $jobfile
4267	cat $source_catalog/Makefile >> $jobfile
4268	echo " " >> $jobfile
4269	echo "%END%" >> $jobfile
4270	echo " " >> $jobfile
4271
4272	echo "cd - > /dev/null" >> $jobfile
4273
4274	fi
4275
4276
4277	# ABSPEICHERN DER KONFIGURATIONSDATEI
4278	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4279	echo "cat > $config_file << \"%END%\"" >> $jobfile
4280	cat $config_file >> $jobfile
4281	echo "%END%" >> $jobfile
4282	echo " " >> $jobfile
4283
4284
4285	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4286	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4287	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4288	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4289	echo "%END%" >> $jobfile
4290	if [[ $host = lctit ]]
4291	then
4292	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4293	echo "mv mrun_new $mrun_script_name" >> $jobfile
4294	fi
4295	echo "chmod u+x $mrun_script_name" >> $jobfile
4296	echo "execute_mrun=true" >> $jobfile
4297	echo " " >> $jobfile
4298
4299	fi
4300
4301
4302	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4303	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4304	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4305	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4306	if [[ $do_remote = true ]]
4307	then
4308	(( i = 0 ))
4309	while (( i < iin ))
4310	do
4311	(( i = i + 1 ))
4312	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4313	if [[ "${transin[$i]}" = job ]]
4314	then
4315	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4316	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4317	echo " " >> $jobfile
4318	echo "%END%" >> $jobfile
4319	else
4320	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4321	fi
4322
4323	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4324	echo "if [[ \$? = 1 ]]" >> $jobfile
4325	echo "then" >> $jobfile
4326	echo " echo \" \" " >> $jobfile
4327	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4328	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4329	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4330	echo " execute_mrun=false" >> $jobfile
4331	echo "fi" >> $jobfile
4332	done
4333	fi
4334
4335	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4336	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4337	echo "LOCAL_PWD=$working_directory" >> $jobfile
4338	echo "export LOCAL_PWD" >> $jobfile
4339
4340	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4341	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4342	echo "export LOCAL_MRUN_PATH" >> $jobfile
4343
4344	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4345	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4346	then
4347	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4348	fi
4349
4350	# MRUN AUF ZIELRECHNER AUFRUFEN
4351	echo "set -x" >> $jobfile
4352	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4353
4354	echo 'ls -al; echo `pwd`' >> $jobfile
4355	echo "cd \$HOME" >> $jobfile
4356	echo "rm -rf $TEMPDIR" >> $jobfile
4357
4358
4359
4360
4361	# JOB PER SUBJOB STARTEN
4362	if [[ $silent = false ]]
4363	then
4364	printf "\n "
4365	else
4366	printf "\n\n"
4367	fi
4368
4369	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4370	rm -rf $jobfile
4371
4372
4373	fi # ENDE REMOTE-TEIL
4374
4375
4376
4377	# ENDE DER PROZEDUR

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