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source: palm/trunk/SCRIPTS/mrun @ 359

Last change on this file since 359 was 359, checked in by letzel, 15 years ago
Bugfix for extended NetCDF files: In order to avoid 'data mode' errors if updated attributes are larger than their original size, NF90_PUT_ATT is called in 'define mode' enclosed by NF90_REDEF and NF90_ENDDEF calls. This implies a possible performance loss; an alternative strategy would be to ensure equal attribute size in a job chain. (netcdf) Changed: For extended NetCDF files, the updated title attribute includes an update of time_average_text where appropriate. (netcdf) Bugfix: correction of initial volume flow for non-flat topography (init_3d_model) Bugfix: zero initialization of arrays within buildings for 'cyclic_fill' (init_3d_model) New: MPI debug option (mrun) Documentation updates: topography file format (chapter 3.5.4) NC identifier range expanded to 444 (appendix_a)
Property svn:keywords set to `Id Rev`
File size: 164.6 KB

Line
1	#!/bin/ksh
2	# mrun - Plot-Shellskript
3	# $Id: mrun 359 2009-08-19 16:56:44Z letzel $
4
5	# Prozedur zum Starten von Modellaeufen
6
7	# letzte Aenderung:
8	# 03/03/94 - Siggi - Entwicklungsbeginn
9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
11	# zelne Variable exportiert. Dies ist noetig, weil an-
12	# sonsten irgendein Speicher ueberlaeuft und von mrun
13	# aufgerufene Programme (z.B. stageout) mit Fehlern
14	# abbrechen (too many arguments)
15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
16	# defaultmaessig im RRZN-Profile eingeschaltet
17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
18	# wegfallen
19	# 25/04/00 - Siggi - Version 1.5
20	# remote_addres und remote_user in return_addres bzw.
21	# return_username umbenannt, return_username wird dem
22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
23	# Neue Variable remote_username, die beim interaktiven
24	# mrun-Aufruf zwingend ueber die neue Option -u oder
25	# in der Konfigurationsdatei angegeben werden muss.
26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
27	# Version 1.7
28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
31	# zu bestimmen; Praeprozessoroptionen haben nun alle
32	# die Form -Dtext=text, weil auf IBM sonst text durch
33	# die leere Zeichenkette ersetzt wird
34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
36	# (-D$OMP=OMP) in order to avoid problems with
37	# OMP_NUM_THREADS
38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
39	# tar files, one for each node used
40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
42	# 17/01/05 - Siggi - job for data transfer to local machine now within
43	# job class c1 (HLRN)
44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
46	# base filename and cycle number
47	# 16/02/05 - Gerald - hababai validated
48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
49	# 29/03/05 - Marcus - berni*-en0 validated
50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
51	# 24/04/05 - Siggi - netcdf support on lcmuk
52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
54	# number) can now be used within interactive runs
55	# 12/05/05 - Siggi - netcdf support on ibm
56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
57	# 18/05/05 - Siggi - netcdf support on nec
58	# 24/05/05 - Siggi - netcdf support on ibms
59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
60	# to 30 seconds
61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
62	# PATH is temporarily set)
63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
64	# caused warnings in the job protocol
65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
67	# removed
68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
69	# realized by file attribute trpe
70	# 28/10/05 - Siggi - if existing, the file extension is output in case
71	# of missing input file - no job abort in case of
72	# missing input files with file extensions
73	# (preliminary solution)
74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
76	# 07/12/05 - Siggi - gallego and elephanta admitted
77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
79	# 20/01/06 - Siggi - cpp directive for ibmy
80	# 09/02/06 - Siggi - ibmy admitted for batch mode
81	# 13/04/06 - Siggi - ostria admitted
82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
84	# optimization of OpenMP runs (option stacksize is
85	# necessary for large gridpoint numbers because
86	# otherwise a segmentation fault occurs)
87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
90	# 20/09/06 - Marcus - add DVRP library on nech
91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
92	# on local NAMELIST file ENVPAR
93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
95	# 06/02/07 - Siggi - add DVRP library on lcmuk
96	# 07/02/07 - Siggi - revision of source code handling, source code is
97	# now expected in directory given by source_path and
98	# not in the current working directory, source code
99	# files provided in add_source_path are allways
100	# compiled, source code to be compiled is allways
101	# sampled in SOURCES_FOR_RUN_$fname which is a
102	# subdirectory of the current working directory,
103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
104	# adapted for RIAM (neck)
105	# bugfix for cycle number of output file (extout)
106	# all hpmuk-related code removed
107	# 14/02/07 - Siggi - dvrp support for neck added
108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
109	# mrun_path replaced by PALM_BIN,
110	# all machines are calling interpret_config.x
111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
112	# output
113	# 16/03/07 - Siggi - adjustments for lctit
114	# 29/03/07 - Siggi - global revision transfered to batch job by new
115	# option -G
116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
117	# + netcdf/dvrp-options are read from configuration
118	# file, host identifier (local_host) is read from
119	# config file, code related to ftp filetransfer
120	# removed (incl. option -f)
121	# 19/06/07 - Siggi - time limit for cdata jobs increased
122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
123	# if new option -Y (coupling) is given,
124	# output of executables to aout_output removed,
125	# messages are immediately written to stdout instead
126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
128	# variables out to the nodes in coupled mode -disabled-
129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
131	# environment variables out to the nodes in coupled mode
132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
133	# suggestions
134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
135	# argument -g group_number, admit all sla* node_usage
136	# queues
137	# 30/10/07 - Marcus - further adjustments for queues on lctit
138	# 14/02/08 - Bjoern - link of restart files with long file name possible
139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
140	# true, mrun tries "ln -f" on local output and resorts
141	# to "cp" or "cp -r" on error
142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
143	# which allows the user to choose his own job catalog
144	# by setting job_catalog in the configuration file
145	# (default is ~/job_queue),
146	# workaround for mpiexec with -env option,
147	# adjustments for lcxt4 (Bergen Center for Computational
148	# Science)
149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
150	# true, mrun tries "ln -f" on local input and resorts
151	# to "cp" or "cp -r" on error
152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
153	# 14/07/08 - Siggi - adjustments for lcsgih
154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
158	# argument
159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
160	# file
161	# 11/11/08 - Siggi - rules for using user code files changed: user
162	# code splitted into one file per subroutine,
163	# user can provide his/her own makefile, only
164	# default source-code filenames are allowed
165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
167	# with environment variable mpilib
168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
169	# using environment variable totalview
170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
171	# interactive runs
172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
174	# dvr streaming server is automatically started using
175	# new variable dvr_server and a configuration file
176	# .dvrserver.config,
177	# processing of dvr output files using new script
178	# process_dvr_output implemented, in order to make
179	# dvr application more user friendly
180	# 20/03/09 - Marcus - update of n1ge command for lctit
181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
182	# to be followed by a coupled atmosphere-ocean run
183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
185	# 08/07/09 - Siggi - default value for email_notification is none,
186	# option -e added to subjob
187	# 19/08/09 - Marcus - MPI debug option
188
189
190	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
191
192	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
193	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
194	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
195
196	AddFilenames=""
197	additional_conditions=""
198	add_source_path=""
199	afname=""
200	archive_save=true
201	archive_system=none
202	compiler_name=""
203	cond1=""
204	cond2=""
205	config_file=.mrun.config
206	coupled_dist=""
207	coupled_mode="mpi1"
208	cpp_opts=""
209	cpp_options=""
210	cpumax=0
211	cpurest=0
212	delete_temporary_catalog=true
213	do_batch=false
214	do_compile=true
215	do_remote=false
216	do_stagein=true
217	do_stageout=true
218	do_trace=false
219	email_notification="none"
220	exclude=""
221	executable=""
222	execution_error=false
223	fimm=false
224	fname=test
225	fromhost=""
226	global_revision=""
227	group_number=none
228	host=""
229	host_file=""
230	hp=""
231	ignore_archive_error=false
232	input_list=""
233	interpreted_config_file=""
234	job_catalog="~/job_queue"
235	job_on_file=""
236	keep_data_from_previous_run=false
237	link_local_input=false
238	link_local_output=false
239	localhost_realname=$(hostname)
240	local_compile=false
241	local_dvrserver_running=.FALSE.
242	locat=normal
243	mainprog=""
244	makefile=""
245	mc=$0
246	while [[ $(echo $mc \| grep -c "/") != 0 ]]
247	do
248	mc=`echo $mc \| cut -f2- -d"/"`
249	done
250	module_files=""
251	mrun_script_name=$mc
252	netcdf_inc=""
253	netcdf_lib=""
254	netcdf_support=false
255	node_usage=default
256	numprocs=""
257	numprocs_atmos=0
258	numprocs_ocean=0
259	OOPT=""
260	openmp=false
261	output_list=""
262	package_list=""
263	punkte="..........................................................."
264	queue=none
265	read_from_config=""
266	restart_run=false
267	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
268	if [[ $return_addres = 130.75.105.158 ]]
269	then
270	return_addres=172.20.25.41
271	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
272	fi
273	return_password=""
274	return_username=$LOGNAME
275	remotecall=false
276	remote_username=""
277	run_coupled_model=false
278	run_mode=""
279	scirocco=false
280	store_on_archive_system=true
281	striche=" ----------------------------------------------------------------------------"
282	silent=false
283	source_list=""
284	source_path=SOURCE
285	tasks_per_node=""
286	threads_per_task=1
287	tmpcreate=false
288	tmp_data_catalog=""
289	transfer_problems=false
290	usern=$LOGNAME
291	working_directory=`pwd`
292	TOPT=""
293	XOPT=""
294	zeit=$( date \| cut -c 12-19 )
295
296	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
297	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
298
299	typeset -R30 calltime
300	typeset -L20 spalte1
301	typeset -L40 spalte2
302	typeset -L60 spalte3
303	typeset -L35 string1=`date`
304	typeset -L12 string2=$usern
305	typeset -L12 string3=$localhost_realname
306	typeset -L12 string4
307	typeset -L12 string5
308	typeset -L30 version="MRUN 2.0 Rev$Rev: 359 $"
309
310
311
312	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
313	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
314
315	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
316	# EXPORTIERT WERDEN
317	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
318	export group_number input_list memory numprocs output_list queue run_mode
319
320
321
322	# FEHLERBEHANDLUNG
323	# BEI EXIT:
324	trap 'rm -rf $working_directory/tmp_mrun
325	if [[ $locat != localhost ]]
326	then
327	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
328	# then
329	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
330	#MRUN-calls on $localhost
331	#
332	#date and time user localhost remotehost termination mrun-command
333	#--------------------------------------------------------------------------------------------------------------------
334	#%STATEND%
335	# chmod 666 ${mrun_path}/statistik/mrun_statistik
336	# fi
337	#
338	# # EINTRAG IN DIE STATISTIK-DATEI
339	# string4=$host
340	# string5=$locat
341	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
342	# then
343	# if [[ $do_batch = true ]]
344	# then
345	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
346	# else
347	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
348	# fi
349	# fi
350	echo " " > /dev/null
351	fi
352
353	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
354	then
355
356	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
357	(( i = 0 ))
358	while (( i < iec ))
359	do
360	(( i = i + 1 ))
361	printf "\n *** Execution of ERROR-command:\n"
362	printf " >>> ${err_command[$i]}\n"
363	eval ${err_command[$i]}
364	done
365	if [[ -n $interpreted_config_file ]] then
366	rm -rf $interpreted_config_file
367	fi
368	if [[ -n .mrun_environment ]] then
369	rm -rf .mrun_environment
370	fi
371	if [[ $tmpcreate = true ]]
372	then
373	printf "\n *** Contents of \"$TEMPDIR\":\n"
374	ls -al; cd
375	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
376	fi
377	if [[ "$dvrserver_id" != "" ]]
378	then
379	echo "+++ killing dvrserver_id=$dvrserver_id"
380	kill $dvrserver_id
381	fi
382	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
383	then
384	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
385	fi
386	printf "\n\n+++ MRUN killed \n\n"
387	elif [[ $locat != control_c ]]
388	then
389	printf "\n\n --> all actions finished\n\n"
390	printf " Bye, bye $usern !!\n\n"
391	fi' exit
392
393
394	# BEI TERMINAL-BREAK:
395	trap 'rm -rf $working_directory/tmp_mrun
396	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
397	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
398	then
399	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
400	fi
401	if [[ "$dvrserver_id" != "" ]]
402	then
403	echo "+++ killing dvrserver_id=$dvrserver_id"
404	kill $dvrserver_id
405	fi
406	printf "\n+++ MRUN killed by \"^C\" \n\n"
407	locat=control_c
408	exit
409	' 2
410
411
412	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
413	# BEEN SET
414	if [[ "$PALM_BIN" = "" ]]
415	then
416	printf "\n +++ environment variable PALM_BIN has not been set"
417	printf "\n please set it to the directory where the PALM scripts are located"
418	locat=palm_bin; exit
419	fi
420	export PATH=$PALM_BIN:$PATH
421
422
423
424	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
425	# FUER FOLGEJOBS BENOETIGT WIRD
426	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
427	do
428	case $option in
429	(a) afname=$OPTARG;;
430	(A) store_on_archive_system=false; mc="$mc -A";;
431	(b) do_batch=true; mc="$mc -b";;
432	(B) delete_temporary_catalog=false; mc="$mc -B";;
433	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
434	(C) restart_run=true; mc="$mc -C";;
435	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
436	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
437	(F) job_on_file="-D"; mc="$mc -F";;
438	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
439	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
440	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
441	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
442	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
443	(I) ignore_archive_error=true; mc="$mc -I";;
444	(k) keep_data_from_previous_run=true; mc="$mc -k";;
445	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
446	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
447	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
448	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
449	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
450	(O) use_openmp=true; mc="$mc -O";;
451	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
452	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
453	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
454	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
455	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
456	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
457	(S) read_from_config=false; mc="$mc -S";;
458	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
459	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
460	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
461	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
462	(v) silent=true; mc="$mc -v";;
463	(x) do_trace=true;set -x; mc="$mc -x";;
464	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
465	(y) ocean_file_appendix=true; mc="$mc -y";;
466	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
467	(\?) printf "\n +++ unknown option $OPTARG \n"
468	printf "\n --> type \"$0 ?\" for available options \n"
469	locat=parameter;exit;;
470	esac
471	done
472
473
474	# EVTL. POSITIONSPARAMETER EINLESEN
475	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
476	shift OPTIND-1
477
478
479	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
480	if [[ "$1" = "?" ]]
481	then
482	(printf "\n *** mrun can be called as follows:\n"
483	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
484	printf "\n Description of available options:\n"
485	printf "\n Option Description Default-Value"
486	printf "\n -a base name of input files equiv. -d"
487	printf "\n -A no archiving when using file-attribute fl"
488	printf "\n -b batch-job on local machine ---"
489	printf "\n -B do not delete temporary directory at end ---"
490	printf "\n -c configuration file .mrun.config"
491	printf "\n -d base name of files attached to program test"
492	printf "\n -D preprocessor(cpp)-directives \"\" "
493	printf "\n -F create remote job file only ---"
494	printf "\n -h execution host $localhost_realname"
495	printf "\n -i INPUT control list \"\" "
496	printf "\n -I archiving errors of previous batch-jobs"
497	printf "\n will be ignored"
498	printf "\n -k keep data from previous run"
499	printf "\n -K additional conditions for controling"
500	printf "\n usage of conditional code and"
501	printf "\n env-variables in configuration file \"\" "
502	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
503	printf "\n -M Makefile name Makefile"
504	printf "\n -n node usage (shared/not_shared) depending on -h"
505	printf "\n -o OUTPUT control list \"\" "
506	printf "\n -O use OpenMP ---"
507	printf "\n -p software package list \"\" "
508	printf "\n -q queue \"$queue\" "
509	printf "\n -r run control list (combines -i -o) \"\" "
510	printf "\n -s filenames of routines to be compiled \"\" "
511	printf "\n must end with .f, .f90, .F, or .c !"
512	printf "\n use \"..\" for more than one file and wildcards"
513	printf "\n -s TEST compiles all files with w-permit"
514	printf "\n -S config file interpreted by shellscript ---"
515	printf "\n -t allowed cpu-time in seconds (batch) 0"
516	printf "\n -T tasks per node depending on -h"
517	printf "\n -u username on remote machine \"\" "
518	printf "\n -v no prompt for confirmation ---"
519	printf "\n -x tracing of mrun for debug purposes ---"
520	printf "\n -X # of processors (on parallel machines) 1"
521	printf "\n -y add appendix \"_O\" to all local output"
522	printf "\n files (ocean precursor runs followed by"
523	printf "\n coupled atmosphere-ocean runs) ---"
524	printf "\n -Y run coupled model, \"#1 #2\" with"
525	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
526	printf "\n "
527	printf "\n Possible values of positional parameter <modus>:"
528	printf "\n \"?\" - this outline \n\n") \| more
529	exit
530	elif [[ "$1" != "" ]]
531	then
532	printf "\n +++ positional parameter $1 unknown \n"
533	locat=parameter; exit
534	fi
535
536
537
538	# KURZE STARTMELDUNG
539	printf "\n*** $version "
540	printf "\n will be executed. Please wait ..."
541
542
543
544	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
545	if [[ ! -f $config_file ]]
546	then
547	printf "\n\n +++ configuration file: "
548	printf "\n $config_file"
549	printf "\n does not exist"
550	locat=connect; exit
551	fi
552
553
554	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
555	line=""
556	grep "%host_identifier" $config_file > tmp_mrun
557	while read line
558	do
559	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
560	then
561	HOSTNAME=`echo $line \| cut -d" " -s -f2`
562	host_identifier=`echo $line \| cut -d" " -s -f3`
563	if [[ $localhost_realname = $HOSTNAME ]]
564	then
565	localhost=$host_identifier
566	break
567	fi
568	fi
569	done < tmp_mrun
570
571	if [[ "$localhost" = "" ]]
572	then
573	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
574	printf "\n for local host \"$localhost_realname\"."
575	printf "\n Please add line"
576	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
577	printf "\n to the configuration file."
578	locat=localhost; exit
579	fi
580
581
582	# HOSTSPEZIFISCHE VARIABLEN SETZEN
583	case $localhost_realname in
584	(breg-en0\|berni-en0) archive_system=tivoli;;
585	(cs*) archive_system=ut;;
586	(fimm.bccs.uib.no) fimm=true;;
587	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
588	(hreg-en0\|hanni-en0) archive_system=tivoli;;
589	(scirocco) scirocco=true;;
590	esac
591
592
593
594	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
595	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
596	[[ "$afname" = "" ]] && afname=$fname
597
598
599	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
600	if [[ "$run_mode" != "" ]]
601	then
602	input_list="$input_list $run_mode"
603	output_list="$output_list $run_mode"
604	fi
605
606
607	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
608	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
609	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
610	# STARTET)
611	if [[ "$fromhost" = "" ]]
612	then
613	fromhost=$localhost
614	fi
615
616
617	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
618	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
619	then
620	source_list=TEST
621	local_compile=true
622	host=$localhost
623	fi
624
625
626	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
627	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
628	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
629	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
630	if [[ -n $host && "$host" != $localhost ]]
631	then
632	do_batch=true
633	do_remote=true
634	case $host in
635	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
636	(*) printf "\n"
637	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
638	printf "\n is not available"
639	locat=nqs; (( iec = 0 )); exit;;
640	esac
641	else
642	host=$localhost
643	fi
644
645
646	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
647	if [[ -n $additional_conditions ]]
648	then
649	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
650	cond1=`echo $additional_conditions \| cut -d" " -f1`
651	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
652	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
653	if [[ -n $dummy ]]
654	then
655	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
656	locat=options; exit
657	fi
658	fi
659
660
661	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
662	if [[ $run_coupled_model = true ]]
663	then
664
665	if [[ -n $coupled_dist ]]
666	then
667
668	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
669	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
670
671	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
672	then
673
674	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
675	printf "\n PEs (total) : $numprocs"
676	printf "\n PEs (atmosphere): $numprocs_atmos"
677	printf "\n PEs (ocean) : $numprocs_ocean"
678	locat=coupling; exit
679
680	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
681	# THIS SHOULD BE REMOVED IN FUTURE
682	elif (( $numprocs_ocean != $numprocs_atmos ))
683	then
684
685	printf "\n +++ currently only 1:1 topologies are supported"
686	printf "\n PEs (total) : $numprocs"
687	printf "\n PEs (atmosphere): $numprocs_atmos"
688	printf "\n PEs (ocean) : $numprocs_ocean"
689	(( numprocs_atmos = $numprocs / 2 ))
690	(( numprocs_ocean = $numprocs / 2 ))
691	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
692
693	fi
694
695	else
696
697	(( numprocs_ocean = $numprocs / 2 ))
698	(( numprocs_atmos = $numprocs / 2 ))
699
700	fi
701	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
702
703	# GET coupled_mode FROM THE CONFIG FILE
704	line=""
705	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
706	while read line
707	do
708	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
709	then
710	coupled_mode="mpi2"
711	fi
712	done < tmp_mrun
713
714	fi
715
716
717	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
718	# ARCHIVIERUNG FEHLGESCHLAGEN IST
719	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
720	then
721	if [[ $ignore_archive_error = false ]]
722	then
723	printf "\n +++ data archiving of previous run failed"
724	printf "\n see directory \~/job_queue on remote machine"
725	locat=archive; exit
726	else
727	printf "\n +++ warning: data archiving in a previous run failed"
728	printf "\n MRUN continues, trying to get backup copy"
729	fi
730	fi
731
732
733
734	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
735	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
736	if [[ "$read_from_config" = false ]]
737	then
738
739	[[ $silent = false ]] && printf "\n Reading the configuration file... "
740	while read zeile
741	do
742	[[ $silent = false ]] && printf "."
743
744
745	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
746	# ERSETZEN
747	eval zeile=\"$zeile\"
748
749
750	# INTERPRETATION DER ZEILE
751	if [[ "$(echo $zeile)" = "" ]]
752	then
753	# LEERZEILE, KEINE AKTION
754	continue
755
756	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
757	then
758
759	# ZEILE IST KOMMENTARZEILE
760	true
761
762	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
763	then
764
765	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
766	zeile=$(echo $zeile \| cut -c2-)
767	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
768	var=`echo $zeile \| cut -d" " -f1`
769	value=`echo $zeile \| cut -d" " -s -f2`
770	for_host=`echo $zeile \| cut -d" " -s -f3`
771	for_cond1=`echo $zeile \| cut -d" " -s -f4`
772	for_cond2=`echo $zeile \| cut -d" " -s -f5`
773
774	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
775	then
776
777	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
778	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
779	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
780
781
782	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
783	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
784	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
785	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
786	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
787	# KONFIGURATIONSDATEI
788	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
789	then
790	eval $var=\$value
791
792	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
793	if [[ $do_trace = true ]]
794	then
795	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
796	fi
797	fi
798
799	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
800	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
801	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
802	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
803	if [[ $var = host ]]
804	then
805	if [[ -n $host && "$host" != $localhost ]]
806	then
807	do_batch=true
808	do_remote=true
809	case $host in
810	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
811	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
812	printf "\n is not available"
813	locat=nqs; exit;;
814	esac
815	else
816	host=$localhost
817	fi
818	fi
819
820	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
821	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
822	# DEN PROGRAMMEN BENOETIGT WERDEN
823	export $var
824	fi
825
826
827
828
829	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
830	then
831
832	# ZEILE DEFINIERT ERROR-KOMMANDO
833	(( iec = iec + 1 ))
834	zeile=$(echo $zeile \| cut -c4-)
835	err_command[$iec]="$zeile"
836
837	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
838	then
839
840	# ZEILE DEFINIERT INPUT-KOMMANDO
841	(( iic = iic + 1 ))
842	zeile=$(echo $zeile \| cut -c4-)
843	in_command[$iic]="$zeile"
844
845	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
846	then
847
848	# ZEILE DEFINIERT OUTPUT-KOMMANDO
849	(( ioc = ioc + 1 ))
850	zeile=$(echo $zeile \| cut -c4-)
851	out_command[$ioc]="$zeile"
852
853	else
854
855	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
856	# s2a: in/out - Feld
857	# s2b: loc - Feld (optional)
858	# s2c: tr/ar - Feld (optional)
859	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
860	s1=`echo $zeile \| cut -d" " -f1`
861	s2=`echo $zeile \| cut -d" " -s -f2`
862	s2a=$(echo $s2 \| cut -d":" -f1)
863	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
864	then
865	s2b=""
866	s2c=""
867	else
868	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
869	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
870	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
871	fi
872	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
873	s3=`echo $zeile \| cut -d" " -f3`
874	s4=`echo $zeile \| cut -d" " -s -f4`
875	s5=`echo $zeile \| cut -d" " -s -f5`
876	s6=`echo $zeile \| cut -d" " -s -f6`
877
878
879	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
880	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
881	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
882	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
883	# HANDEN SEIN MUSS (D.H. s2b = loc)
884	IFSALT="$IFS"; IFS="$IFS:"
885	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
886	then
887	found=false
888	for actual in $input_list
889	do
890	for formal in $s3
891	do
892	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
893	done
894	done
895	if [[ $found = true ]]
896	then
897	(( iin = iin + 1 ))
898	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
899	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
900	extin[$iin]=$s6
901	fi
902	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
903	then
904	found=false
905	for actual in $output_list
906	do
907	for formal in $s3
908	do
909	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
910	done
911	done
912	if [[ $found = true ]]
913	then
914	(( iout = iout + 1 ))
915	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
916	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
917	fi
918	elif [[ "$s2a" != in && "$s2a" != out ]]
919	then
920	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
921	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
922	locat=connect; exit
923	fi
924	IFS="$IFSALT"
925	fi
926	done < $config_file
927
928	else
929
930
931	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
932	[[ $silent = false ]] && printf "..."
933	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
934	export interpreted_config_file=.icf.$RANDOM
935
936
937
938	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
939	# VERFUEGUNG STELLEN
940	cat > .mrun_environment << %%END%%
941	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
942	config_file = '$config_file', do_remote = '$do_remote',
943	do_trace = '$do_trace', host = '$host',
944	input_list = '$input_list', icf = '$interpreted_config_file',
945	localhost = '$localhost', output_list = '$output_list' /
946
947	%%END%%
948
949	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
950	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
951	mrun_memory=$memory
952	mrun_group_number=$group_number
953	mrun_cpumax=$cpumax
954	mrun_numprocs=$numprocs
955
956	if [[ $localhost_realname = "sx-fep" ]]
957	then
958	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
959	else
960	interpret_config.x
961	fi
962	rm .mrun_environment
963
964
965	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
966	chmod u+x $interpreted_config_file
967	export PATH=$PATH:.
968	. $interpreted_config_file
969	rm $interpreted_config_file
970
971
972	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
973	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
974	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
975	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
976	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
977
978	fi
979
980
981	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
982	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
983	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
984	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
985	if [[ "$SOURCES_COMPLETE" = "" ]]
986	then
987
988	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
989	# VEREINBART WURDE
990	source_path=""
991	line=""
992	grep "%source_path" $config_file > tmp_mrun
993	while read line
994	do
995	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
996	then
997	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
998	then
999	global_source_path=`echo $line \| cut -d" " -f2`
1000	fi
1001	fi
1002	done < tmp_mrun
1003
1004	line=""
1005	found=false
1006	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1007	while read line
1008	do
1009	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1010	then
1011	if [[ $found = true ]]
1012	then
1013	printf "\n\n +++ more than one source path found in configuration file"
1014	printf "\n for local host \"$localhost\" "
1015	locat=source_path; exit
1016	fi
1017	source_path=`echo $line \| cut -d" " -f2`
1018	found=true
1019	fi
1020	done < tmp_mrun
1021	rm tmp_mrun
1022
1023	if [[ "$source_path" = "" ]]
1024	then
1025	if [[ "$global_source_path" != "" ]]
1026	then
1027	source_path=$global_source_path
1028	else
1029	printf "\n\n +++ no source path found in configuration file"
1030	printf "\n for local host \"$localhost\" "
1031	locat=source_path; exit
1032	fi
1033	fi
1034	eval source_path=$source_path
1035
1036	if [[ ! -d $source_path ]]
1037	then
1038	printf "\n\n +++ source path \"$source_path\" on local host"
1039	printf "\n \"$localhost\" does not exist"
1040	locat=source_path; exit
1041	fi
1042
1043	fi
1044
1045
1046	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1047	# DURCH OPTION -G MITGETEILT)
1048	if [[ "$global_revision" = "" ]]
1049	then
1050	global_revision=`svnversion $source_path 2>/dev/null`
1051	global_revision="Rev: $global_revision"
1052	fi
1053
1054
1055	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1056	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1057	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1058	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1059	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1060	if [[ -n $host && "$host" != $localhost ]]
1061	then
1062	do_batch=true
1063	do_remote=true
1064	case $host in
1065	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
1066	(*) printf "\n"
1067	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1068	printf "\n is not available"
1069	locat=nqs; (( iec = 0 )); exit;;
1070	esac
1071	else
1072	host=$localhost
1073	fi
1074
1075
1076	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1077	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1078	then
1079
1080	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1081	if [[ ! -n $numprocs ]]
1082	then
1083	printf "\n"
1084	printf "\n +++ option \"-K parallel\" requires additional specification"
1085	printf "\n of the number of processors to be used by"
1086	printf "\n mrun-option \"-X\" or by environment-variable"
1087	printf "\n \"numprocs\" in the configuration file"
1088	locat=numprocs; (( iec = 0 )); exit
1089	fi
1090
1091	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1092	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1093	# GESAMTPROZESSORANZAHL IST
1094	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
1095	then
1096	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
1097	(( ival = $tasks_per_node ))
1098	(( pes = numprocs ))
1099	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1100	# then
1101	# (( pes = pes - 1 ))
1102	# fi
1103	(( ii = pes / ival ))
1104	if (( pes - ii * ival > 0 ))
1105	then
1106	printf "\n"
1107	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1108	printf "\n divisor of the total number of processors (option \"-X\")"
1109	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1110	locat=tasks_per_node; (( iec = 0 )); exit
1111	fi
1112	fi
1113
1114	# IBMY HAT NUR EINEN KNOTEN
1115	if [[ $host = ibmy ]]
1116	then
1117	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1118	then
1119	printf "\n"
1120	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1121	printf "\n total number of processors (option \"-X\")"
1122	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1123	locat=tasks_per_node; (( iec = 0 )); exit
1124	fi
1125	fi
1126
1127	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
1128	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
1129	if [[ $use_openmp = true ]]
1130	then
1131	threads_per_task=$tasks_per_node
1132	tasks_per_node=1
1133	fi
1134	OOPT="-O $threads_per_task"
1135	TOPT="-T $tasks_per_node"
1136
1137	# GESAMTZAHL DER KNOTEN BESTIMMEN
1138	if [[ "$tasks_per_node" != "" ]]
1139	then
1140	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1141	fi
1142
1143	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1144	# SETZEN
1145	if [[ $node_usage = default ]]
1146	then
1147	if [[ $host = ibms ]]
1148	then
1149	node_usage=shared
1150	elif [[ $host = lctit ]]
1151	then
1152	node_usage=RAM64GB
1153	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1154	then
1155	node_usage=singlejob
1156	else
1157	node_usage=not_shared
1158	fi
1159	fi
1160
1161	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
1162	then
1163	printf "\n"
1164	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1165	printf "\n \"shared\" or \"not_shared\""
1166	locat=tasks_per_node; (( iec = 0 )); exit
1167	fi
1168
1169	fi
1170
1171	# PRUEFEN, OB HOSTFILE EXISTIERT
1172	if [[ -n $hostfile ]]
1173	then
1174	if [[ ! -f $hostfile ]]
1175	then
1176	printf "\n"
1177	printf "\n +++ hostfile \"$hostfile\" does not exist"
1178	locat=hostfile; exit
1179	fi
1180	fi
1181
1182	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1183	if [[ $host = ibmy && $do_remote = false ]]
1184	then
1185	if [[ ! -f $HOME/.rhosts ]]
1186	then
1187	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1188	printf "\n\n *** file:"
1189	printf "\n $HOME/.rhosts"
1190	printf "\n was created\n"
1191	fi
1192	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1193	then
1194	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1195	printf "\n\n *** file:"
1196	printf "\n $HOME/.rhosts"
1197	printf "\n was extended by the name of the current host\n"
1198	fi
1199	fi
1200
1201
1202
1203	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1204	if [[ $queue = none ]]
1205	then
1206	case $host in
1207	(ibmb) if [[ $node_usage = shared ]]
1208	then
1209	queue=cshare
1210	else
1211	queue=csolo
1212	fi;;
1213	(ibmh) queue=no_class;;
1214	(ibmy) queue=parallel;;
1215	(lcsgib) queue=bigq;;
1216	(lcsgih) queue=bigq;;
1217	(lctit) queue=RAM64GB;;
1218	(nech) queue=none;;
1219	(necriam) queue=SP;;
1220	(unics) queue=unics;;
1221	esac
1222	fi
1223
1224
1225	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1226	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1227	# ERMITTELN
1228	(( i = 0 ))
1229	while (( i < iin ))
1230	do
1231	(( i = i + 1 ))
1232	(( maxcycle = 0 ))
1233
1234	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1235	if [[ "${actionin[$i]}" = di ]]
1236	then
1237	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1238	# REM-MASCHINE AUSWERTEN
1239	eval filename=${pathin[$i]}/${endin[$i]}
1240	else
1241	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1242	# REM-MASCHINE AUSWERTEN
1243	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1244	fi
1245
1246	# PRUEFEN AUF VORHANDENSEIN
1247	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1248	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1249	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1250	then
1251	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1252	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1253	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1254	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1255	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1256	if [[ "${transin[$i]}" != "locopt" ]]
1257	then
1258	printf "\n\n +++ INPUT-file: "
1259	if [[ "${extin[$i]}" = "" ]]
1260	then
1261	printf "\n $filename"
1262	else
1263	printf "\n $filename.${extin[$i]}"
1264	fi
1265	printf "\n does not exist\n"
1266	locat=input; exit
1267	else
1268	transin[$i]="unavailable"
1269	fi
1270	else
1271
1272	# ZYKLUSNUMMER FESTSTELLEN
1273	ls -1 -d $filename > filelist 2>/dev/null
1274	ls -1 -d $filename.* >> filelist 2>/dev/null
1275	while read zeile
1276	do
1277	cycle=$(print $zeile \| cut -f2 -d".")
1278	if [[ "$cycle" = "$zeile" ]]
1279	then
1280	(( icycle = 0 ))
1281	elif [[ "$cycle" = "${extin[$i]}" ]]
1282	then
1283	(( icycle = 0 ))
1284	else
1285	(( icycle = $cycle ))
1286	fi
1287	if (( icycle > maxcycle ))
1288	then
1289	(( maxcycle = icycle ))
1290	file_to_be_used=$zeile
1291	fi
1292	done <filelist
1293	rm filelist
1294
1295	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1296	if (( maxcycle > 0 ))
1297	then
1298	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1299	then
1300	filename=${filename}.$maxcycle.${extin[$i]}
1301	else
1302	filename=${filename}.$maxcycle
1303	fi
1304	else
1305	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1306	then
1307	filename=${filename}.${extin[$i]}
1308	fi
1309	fi
1310
1311	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1312	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1313	absnamein[$i]=$filename
1314	if (( maxcycle > 0 ))
1315	then
1316	if [[ "${actionin[$i]}" = di ]]
1317	then
1318	frelin[$i]=${endin[$i]}.$maxcycle
1319	else
1320	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1321	fi
1322	else
1323	if [[ "${actionin[$i]}" = di ]]
1324	then
1325	frelin[$i]=${endin[$i]}
1326	else
1327	frelin[$i]=${afname}${endin[$i]}
1328	fi
1329	fi
1330
1331	fi
1332	done
1333
1334
1335	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1336	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1337	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1338	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1339	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1340	(( i = 0 ))
1341	while (( i < iout ))
1342	do
1343	(( i = i + 1 ))
1344	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1345	then
1346	if [[ "${actionout[$i]}" = tr ]]
1347	then
1348	actionout[$i]=""
1349	elif [[ "${actionout[$i]}" = trpe ]]
1350	then
1351	actionout[$i]=pe
1352	elif [[ "${actionout[$i]}" = tra ]]
1353	then
1354	actionout[$i]=a
1355	fi
1356	(( maxcycle = 0 ))
1357	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1358	eval catalogname=${pathout[$i]}
1359	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1360	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1361	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1362	then
1363
1364	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1365	if cat /dev/null > $filename
1366	then
1367	rm $filename
1368	else
1369
1370	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1371	if [[ ! -d $catalogname ]]
1372	then
1373	if mkdir -p $catalogname
1374	then
1375	printf "\n\n *** directory:"
1376	printf "\n $catalogname"
1377	printf "\n was created\n"
1378	else
1379	printf "\n\n +++ OUTPUT-file:"
1380	printf "\n $filename"
1381	printf "\n cannot be created, because directory does not exist"
1382	printf "\n and cannot be created either"
1383	printf "\n"
1384	locat=output ; exit
1385	fi 2>/dev/null
1386	else
1387	printf "\n\n +++ OUTPUT-file:"
1388	printf "\n $filename"
1389	printf "\n cannot be created, although directory exists"
1390	printf "\n"
1391	locat=output ; exit
1392	fi
1393	fi 2>/dev/null
1394	else
1395
1396	# ZYKLUSNUMMER FESTSTELLEN
1397	ls -1 -d $filename > filelist 2>/dev/null
1398	ls -1 -d $filename.* >> filelist 2>/dev/null
1399	while read zeile
1400	do
1401	cycle=$(print $zeile \| cut -f2 -d".")
1402	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1403	then
1404	(( icycle = 1 ))
1405	else
1406	(( icycle = $cycle + 1 ))
1407	fi
1408	if (( icycle > maxcycle ))
1409	then
1410	(( maxcycle = icycle ))
1411	fi
1412	done <filelist
1413	rm filelist
1414	fi
1415
1416	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1417	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1418	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1419	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1420	if [[ "${actionout[$i]}" != a ]]
1421	then
1422	if (( maxcycle > 0 ))
1423	then
1424	filename=${filename}.$maxcycle
1425	if cat /dev/null > $filename
1426	then
1427	rm $filename
1428	else
1429	printf "\n +++ OUTPUT-file:"
1430	printf "\n $filename"
1431	printf "\n cannot be created"
1432	locat=output ; exit
1433	fi
1434	fi
1435	else
1436	(( maxcycle = maxcycle - 1 ))
1437	if (( maxcycle > 0 ))
1438	then
1439	filename=${filename}.$maxcycle
1440	fi
1441	fi
1442
1443	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1444	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1445	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1446	pathout[$i]=$filename
1447	if (( maxcycle > 0 ))
1448	then
1449	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1450	else
1451	frelout[$i]=${fname}${endout[$i]}
1452	fi
1453
1454	fi
1455	done
1456
1457
1458	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1459	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1460	then
1461	if [[ "$dvr_inc" = "" ]]
1462	then
1463	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1464	printf "\n This is required for the dvrp_graphics package.\n"
1465	locat=dvr; exit
1466	fi
1467	if [[ "$dvr_lib" = "" ]]
1468	then
1469	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1470	printf "\n This is required for the dvrp_graphics package.\n"
1471	locat=dvr; exit
1472	fi
1473	fi
1474
1475
1476	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1477	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1478	# UEBERSETZT ZU WERDEN)
1479	if [[ "$mainprog" = "" && "$executable" = "" ]]
1480	then
1481	printf "\n +++ neither main program nor executable defined"
1482	locat=source; exit
1483	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1484	then
1485	printf "\n +++ main program as well as executable defined"
1486	locat=source; exit
1487	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1488	then
1489	do_compile=false
1490	fi
1491
1492
1493	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1494	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1495	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1496	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1497	then
1498	rm -rf SOURCES_FOR_RUN_$fname
1499	mkdir SOURCES_FOR_RUN_$fname
1500	fi
1501
1502
1503	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1504	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1505	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1506	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1507	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1508	then
1509
1510	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1511	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
1512
1513
1514	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
1515	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
1516	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
1517	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
1518	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
1519	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
1520	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
1521	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
1522	# GESAMMELT
1523	if [[ "$source_list" = WRITE_PERMIT ]]
1524	then
1525
1526	source_list=""
1527	cd $source_path
1528
1529
1530	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
1531	Names=$(ls -1 *.f90 2>&1)
1532	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
1533	Names=$(ls -1 *.F90 2>&1)
1534	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
1535	Names=$(ls -1 *.F 2>&1)
1536	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
1537	Names=$(ls -1 *.f 2>&1)
1538	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
1539	Names=$(ls -1 *.c 2>&1)
1540	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
1541
1542
1543	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
1544	for dateiname in $Filenames
1545	do
1546	if [[ -w $dateiname ]]
1547	then
1548	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
1549	then
1550	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1551	source_list=$source_list"$dateiname "
1552	fi
1553	fi
1554	done
1555
1556	cd - > /dev/null
1557
1558
1559	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
1560	then
1561
1562	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1563	source_list=""
1564	cd $source_path
1565
1566
1567	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1568	if [[ ! -d .svn ]]
1569	then
1570	printf "\n\n +++ source directory"
1571	printf "\n \"$source_path\" "
1572	printf "\n is not under control of \"subversion\"."
1573	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1574	fi
1575
1576
1577	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1578	Filenames=""
1579	svn status > tmp_mrun
1580	while read line
1581	do
1582	firstc=`echo $line \| cut -c1`
1583	if [[ $firstc = M \|\| $firstc = "?" ]]
1584	then
1585	Name=`echo "$line" \| cut -c8-`
1586	extension=`echo $Name \| cut -d. -f2`
1587	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1588	then
1589	Filenames="$Filenames "$Name
1590	fi
1591	fi
1592	done < tmp_mrun
1593
1594
1595	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1596	for dateiname in $Filenames
1597	do
1598	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1599	source_list=$source_list"$dateiname "
1600	done
1601
1602	cd - > /dev/null
1603
1604
1605	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1606	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1607	# VORHANDEN
1608	elif [[ "$source_list" != "" && $restart_run != true ]]
1609	then
1610
1611	cd $source_path
1612
1613	for filename in $source_list
1614	do
1615
1616	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1617	if [[ $(print $filename \| grep -c "/") != 0 ]]
1618	then
1619	printf "\n +++ source code file: $filename"
1620	printf "\n must not contain (\"/\") "
1621	locat=source; exit
1622	fi
1623
1624	if [[ ! -f $filename ]]
1625	then
1626	printf "\n +++ source code file: $filename"
1627	printf "\n does not exist"
1628	locat=source; exit
1629	else
1630	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1631	fi
1632
1633	done
1634
1635	cd - > /dev/null
1636
1637	fi
1638
1639
1640	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1641	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1642	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1643	if [[ $restart_run != true ]]
1644	then
1645
1646	if [[ ! -f "$source_path/$mainprog" ]]
1647	then
1648	printf "\n\n +++ main program: $mainprog"
1649	printf "\n does not exist in source directory"
1650	printf "\n \"$source_path\"\n"
1651	locat=source; exit
1652	else
1653	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1654	then
1655	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1656	source_list=${mainprog}" $source_list"
1657	fi
1658	fi
1659	fi
1660
1661
1662	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1663	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1664	if [[ "$restart_run" != true ]]
1665	then
1666	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1667	if [[ ! -f $makefile ]]
1668	then
1669	printf "\n +++ file \"$makefile\" does not exist"
1670	locat=make; exit
1671	else
1672	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1673	fi
1674	fi
1675
1676
1677	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1678	if [[ $restart_run != true && "$add_source_path" != "" ]]
1679	then
1680
1681	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1682	if [[ ! -d $add_source_path ]]
1683	then
1684	printf "\n\n +++ WARNING: additional source code directory"
1685	printf "\n \"$add_source_path\" "
1686	printf "\n does not exist or is not a directory."
1687	printf "\n No source code will be used from this directory!\n"
1688	add_source_path=""
1689	sleep 3
1690	else
1691
1692	cd $add_source_path
1693	found=false
1694
1695	Names=$(ls -1 *.f90 2>&1)
1696	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1697	Names=$(ls -1 *.F90 2>&1)
1698	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1699	Names=$(ls -1 *.F 2>&1)
1700	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1701	Names=$(ls -1 *.f 2>&1)
1702	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1703	Names=$(ls -1 *.c 2>&1)
1704	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1705
1706	cd - > /dev/null
1707	cd SOURCES_FOR_RUN_$fname
1708
1709	# COPY MAKEFILE IF EXISTING
1710	if [[ -f $add_source_path/Makefile ]]
1711	then
1712	printf "\n\n *** user Makefile from directory"
1713	printf "\n \"$add_source_path\" is used \n"
1714	sleep 1
1715	cp $add_source_path/Makefile .
1716	fi
1717
1718	for dateiname in $AddFilenames
1719	do
1720	if [[ -f $dateiname ]]
1721	then
1722	printf "\n +++ source code file \"$dateiname\" found in additional"
1723	printf "\n source code directory \"$add_source_path\" "
1724	printf "\n but was also given with option \"-s\" which means that it should be taken"
1725	printf "\n from directory \"$source_path\"."
1726	locat=source; exit
1727	fi
1728
1729	cp $add_source_path/$dateiname .
1730	source_list="$source_list $dateiname"
1731
1732	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1733	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1734	then
1735	printf "\n\n +++ user file \"$dateiname\" "
1736	printf "\n is not listed in Makefile \n"
1737	locat=source; exit
1738	else
1739
1740	# Default User-Interface von der Liste entfernen, falls Datei
1741	# ein User-Interface enthaelt
1742	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1743	# then
1744	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1745	# then
1746	# rm -rf user_interface.f90
1747	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1748	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1749	# printf "\n since a user-interface is found in file"
1750	# printf "\n \"$add_source_path/$dateiname\" \n"
1751	# sleep 3
1752	# else
1753	if [[ $found = false ]]
1754	then
1755	found=true
1756	printf "\n\n *** following user file(s) added to the"
1757	printf " files to be translated:\n "
1758	fi
1759	printf "$dateiname "
1760	sleep 0.5
1761	fi
1762	done
1763	[[ $found = true ]] && printf "\n"
1764	cd - > /dev/null
1765	fi
1766	fi
1767
1768
1769	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1770	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1771	if [[ $restart_run != true && -n $package_list ]]
1772	then
1773
1774	cd $source_path
1775
1776	for package in $package_list
1777	do
1778
1779	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1780
1781	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1782	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1783	# LIEFERT
1784	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1785
1786
1787	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1788	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1789	for source_list_name in $package_source_list
1790	do
1791	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1792	then
1793
1794	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1795	ending=`echo $source_list_name \| cut -f2 -d.`
1796	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1797	then
1798	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1799	source_list="$source_list $source_list_name"
1800	fi
1801	fi
1802	done
1803	done
1804
1805	cd - > /dev/null
1806	fi
1807
1808
1809	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1810	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1811	# if [[ "$restart_run" != true ]]
1812	# then
1813	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1814	# if [[ ! -f $makefile ]]
1815	# then
1816	# printf "\n +++ file \"$makefile\" does not exist"
1817	# locat=make; exit
1818	# else
1819	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1820	# fi
1821	# fi
1822
1823	fi # do_compile=true
1824
1825
1826	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1827	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1828	if [[ $do_compile = true ]]
1829	then
1830
1831	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1832	# ZUSAMMENSETZEN
1833	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1834	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1835	then
1836	cpp_options="${cpp_options},-D__ibm=__ibm"
1837	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1838	then
1839	cpp_options="$cpp_options -D__nec"
1840	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1841	then
1842	cpp_options="$cpp_options -D__lc"
1843	else
1844	cpp_options="$cpp_options -D__$localhost"
1845	fi
1846
1847	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1848	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1849	then
1850	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1851	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1852	else
1853	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1854	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1855	fi
1856
1857	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1858	if [[ -n $package_list ]]
1859	then
1860	for package in $package_list
1861	do
1862	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1863	then
1864	if [[ $package != "dvrp_graphics+1PE" ]]
1865	then
1866	cpp_options="${cpp_options},-D__$package=__$package"
1867	else
1868	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1869	export use_seperate_pe_for_dvrp_output=true
1870	fi
1871	else
1872	if [[ $package != "dvrp_graphics+1PE" ]]
1873	then
1874	cpp_options="$cpp_options -D__$package"
1875	else
1876	cpp_options="$cpp_options -D__dvrp_graphics"
1877	export use_seperate_pe_for_dvrp_output=true
1878	fi
1879	fi
1880	done
1881	fi
1882
1883	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1884	if [[ -n $cpp_opts ]]
1885	then
1886	for popts in $cpp_opts
1887	do
1888	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1889	then
1890	cpp_options="${cpp_options},-D__$popts=__$popts"
1891	else
1892	cpp_options="$cpp_options -D__$popts"
1893	fi
1894	done
1895	fi
1896
1897	else
1898
1899
1900	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1901	if [[ $do_remote = false ]]
1902	then
1903	if [[ ! -f $executable ]]
1904	then
1905	printf "\n +++ executable file: $executable"
1906	printf "\n does not exist"
1907	locat=executable; exit
1908	fi
1909	fi
1910	fi
1911
1912
1913	# JOBMODUS FESTSTELLEN
1914	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
1915	then
1916	jobmo=BATCH
1917	else
1918	jobmo=INTERACTIVE
1919	fi
1920
1921
1922	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1923	# DURCH BENUTZER ANDERWEITIG VEREINBART
1924	if [[ "$compiler_name" = "" ]]
1925	then
1926
1927	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1928	locat=compiler_name; exit
1929
1930	fi
1931
1932
1933	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1934	[[ $localhost = necriam ]] && compiler_name=mpif90
1935
1936
1937
1938	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1939	kennung=$RANDOM
1940	if [[ "$tmp_user_catalog" = "" ]]
1941	then
1942	if [[ $localhost = ibmh ]]
1943	then
1944	tmp_user_catalog=$SCRATCH
1945	elif [[ $localhost = nech ]]
1946	then
1947	tmp_user_catalog=$WRKSHR
1948	else
1949	tmp_user_catalog=/tmp
1950	fi
1951	fi
1952	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1953
1954
1955	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1956	# BESTIMMEN
1957	if [[ "$tmp_data_catalog" = "" ]]
1958	then
1959	if [[ $localhost = ibmb ]]
1960	then
1961	tmp_data_catalog=$WORK/mrun_restart_data
1962	elif [[ $localhost = nech ]]
1963	then
1964	tmp_data_catalog=$WRKSHR/mrun_restart_data
1965	else
1966	tmp_data_catalog=/tmp/mrun_restart_data
1967	fi
1968	fi
1969
1970
1971	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1972	# ERSETZEN
1973	if [[ $do_remote = false && $do_compile = true ]]
1974	then
1975	eval fopts=\"$fopts\"
1976	eval lopts=\"$lopts\"
1977	fi
1978
1979
1980
1981	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1982	fopts="$fopts $netcdf_inc $dvr_inc"
1983	lopts="$lopts $netcdf_lib $dvr_lib"
1984	ROPTS="$ropts"
1985	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
1986	then
1987	XOPT="-X $numprocs"
1988	fi
1989
1990
1991
1992	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1993	# GRAMM BENOETIGT
1994	done=false
1995	while [[ $done = false ]]
1996	do
1997	cputime=$cpumax
1998	if (( $cputime == 0 ))
1999	then
2000	if [[ $do_batch = true ]]
2001	then
2002	printf "\n +++ cpu-time is undefined"
2003	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2004	printf "\n >>> "
2005	read cputime 1>/dev/null 2>&1
2006	else
2007	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2008	fi
2009	else
2010	done=true
2011	fi
2012	cpumax=$cputime
2013	done
2014
2015	(( minuten = cputime / 60 ))
2016	(( sekunden = cputime - minuten * 60 ))
2017
2018
2019	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2020	if [[ $do_batch = true ]]
2021	then
2022	done=false
2023	while [[ $done = false ]]
2024	do
2025	if (( memory == 0 ))
2026	then
2027	printf "\n +++ memory demand is undefined"
2028	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2029	printf "\n >>> "
2030	read memory 1>/dev/null 2>&1
2031	else
2032	done=true
2033	fi
2034	done
2035	fi
2036
2037
2038	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2039	if [[ $do_remote = true && -z $remote_username ]]
2040	then
2041	while [[ -z $remote_username ]]
2042	do
2043	printf "\n +++ username on remote host \"$host\" is undefined"
2044	printf "\n >>> Please type username:"
2045	printf "\n >>> "
2046	read remote_username
2047	done
2048	mc="$mc -u$remote_username"
2049	fi
2050
2051
2052	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2053	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2054	then
2055	[[ "$mpilib" = "" ]] && export mpilib=mpt
2056	fi
2057
2058
2059
2060	###########################################################################
2061	# HEADER-AUSGABE
2062	###########################################################################
2063
2064
2065	calltime=$(date)
2066	printf "\n"
2067	# [[ $silent = false ]] && clear
2068	printf "#--------------------------------------------------------------# \n"
2069	printf "\| $version$calltime \| \n"
2070	printf "\| \| \n"
2071	spalte1="called on:"; spalte2=$localhost_realname
2072	printf "\| $spalte1$spalte2 \| \n"
2073	if [[ $local_compile = false ]]
2074	then
2075	if [[ $do_remote = true ]]
2076	then
2077	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2078	else
2079	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2080	fi
2081	else
2082	spalte1="compiling test only!"; spalte2=""
2083	fi
2084	printf "\| $spalte1$spalte2 \| \n"
2085	if [[ -n $numprocs ]]
2086	then
2087	spalte1="number of PEs:"; spalte2=$numprocs
2088	printf "\| $spalte1$spalte2 \| \n"
2089	fi
2090	if [[ -n $tasks_per_node ]]
2091	then
2092	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2093	printf "\| $spalte1$spalte2 \| \n"
2094	fi
2095	if [[ $threads_per_task != 1 ]]
2096	then
2097	spalte1="threads per task:"; spalte2="$threads_per_task"
2098	printf "\| $spalte1$spalte2 \| \n"
2099	fi
2100	printf "\| \| \n"
2101	if [[ $do_compile = true ]]
2102	then
2103	spalte1=cpp-directives:; spalte2=$cpp_options
2104	printf "\| $spalte1$spalte2 \| \n"
2105	zeile=$(echo "$cpp_options" \| cut -c41-)
2106	while [[ "$zeile" != "" ]]
2107	do
2108	spalte1=""
2109	spalte2=$zeile
2110	printf "\| $spalte1$spalte2 \| \n"
2111	zeile=$(echo "$zeile" \| cut -c41-)
2112	done
2113
2114	spalte1=compiler-options:; spalte2="$fopts"
2115	printf "\| $spalte1$spalte2 \| \n"
2116	zeile=$(echo "$fopts" \| cut -c41-)
2117	while [[ "$zeile" != "" ]]
2118	do
2119	spalte1=""
2120	spalte2=$zeile
2121	printf "\| $spalte1$spalte2 \| \n"
2122	zeile=$(echo "$zeile" \| cut -c41-)
2123	done
2124
2125	spalte1=linker-options:; spalte2=$lopts
2126	printf "\| $spalte1$spalte2 \| \n"
2127	zeile=$(echo "$lopts" \| cut -c41-)
2128	while [[ "$zeile" != "" ]]
2129	do
2130	spalte1=""
2131	spalte2=$zeile
2132	printf "\| $spalte1$spalte2 \| \n"
2133	zeile=$(echo "$zeile" \| cut -c41-)
2134	done
2135
2136	spalte1="main program":; spalte2=$mainprog
2137	printf "\| $spalte1$spalte2 \| \n"
2138	else
2139	spalte1=executable:; spalte2=$executable
2140	printf "\| $spalte1$spalte2 \| \n"
2141	fi
2142	printf "\| \| \n"
2143	spalte1="base name of files":; spalte2=$fname
2144	printf "\| $spalte1$spalte2 \| \n"
2145	if [[ $fname != $afname ]]
2146	then
2147	spalte1="base name of input files":; spalte2=$afname
2148	printf "\| $spalte1$spalte2 \| \n"
2149	fi
2150	spalte1="INPUT control list":; spalte2=$input_list
2151	printf "\| $spalte1$spalte2 \| \n"
2152	spalte1="OUTPUT control list":; spalte2=$output_list
2153	printf "\| $spalte1$spalte2 \| \n"
2154
2155	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2156	then
2157	spalte1="memory demand / PE":; spalte2="$memory MB"
2158	printf "\| $spalte1$spalte2 \| \n"
2159	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2160	printf "\| $spalte1$spalte2 \| \n"
2161	fi
2162
2163	if [[ $do_compile = true ]]
2164	then
2165	printf "\| \| \n"
2166	printf "\| Files to be compiled: \| \n"
2167	zeile=$source_list
2168	while [[ "$zeile" != "" ]]
2169	do
2170	spalte3=$zeile
2171	printf "\| $spalte3 \| \n"
2172	zeile=$(echo "$zeile" \| cut -c61-)
2173	done
2174	fi
2175	printf "#--------------------------------------------------------------#"
2176
2177
2178
2179	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2180	if [[ $do_trace = true ]]
2181	then
2182	(( i = 0 ))
2183	while (( i < iin ))
2184	do
2185	(( i = i + 1 ))
2186	if (( i == 1 ))
2187	then
2188	printf "\n\n >>> INPUT-file assignments:\n"
2189	fi
2190	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2191	done
2192	(( i = 0 ))
2193	while (( i < iout ))
2194	do
2195	(( i = i + 1 ))
2196	if (( i == 1 ))
2197	then
2198	printf "\n\n >>> OUTPUT-file assignments:\n"
2199	fi
2200	printf "\n ${localout[$i]} : ${pathout[$i]}"
2201	done
2202	(( i = 0 ))
2203	while (( i < iic ))
2204	do
2205	(( i = i + 1 ))
2206	if (( i == 1 ))
2207	then
2208	printf "\n\n >>> INPUT-commands:\n"
2209	fi
2210	printf "\n ${in_command[$i]}"
2211	done
2212	(( i = 0 ))
2213	while (( i < ioc ))
2214	do
2215	(( i = i + 1 ))
2216	if (( i == 1 ))
2217	then
2218	printf "\n\n >>> OUTPUT-commands:\n"
2219	fi
2220	printf "\n ${out_command[$i]}"
2221	done
2222	fi
2223
2224
2225	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2226	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2227	then
2228	antwort=dummy
2229	printf "\n\n"
2230	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2231	do
2232	printf " >>> everything o.k. (y/n) ? "
2233	read antwort
2234	done
2235	if [[ $antwort = n \|\| $antwort = N ]]
2236	then
2237	locat=user_abort; (( iec = 0 )); exit
2238	fi
2239	if [[ $do_batch = true ]]
2240	then
2241	printf " >>> batch-job will be created and submitted"
2242	else
2243	if [[ $local_compile = false ]]
2244	then
2245	printf " >>> MRUN will now continue to execute on this machine"
2246	else
2247	printf " >>> a test compilation will now be carried out on this machine"
2248	fi
2249	fi
2250	fi
2251
2252
2253
2254
2255	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2256	# CHENDE AKTIONEN DURCHGEFUEHRT
2257	if [[ $do_batch = false ]]
2258	then
2259
2260
2261	# TEMPORAEREN KATALOG ERZEUGEN
2262	mkdir -p $TEMPDIR
2263	chmod go+rx $TEMPDIR
2264	tmpcreate=true
2265
2266
2267	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2268	# TEMPORAERES VERZEICHNIS KOPIEREN
2269	if [[ $do_compile = true ]]
2270	then
2271
2272	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2273	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2274	if [[ $localhost = nech ]]
2275	then
2276	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2277	if mkdir -p $TEMPDIR_COMPILE
2278	then
2279	printf "\n *** \"$TEMPDIR_COMPILE\" "
2280	printf "\n is generated as temporary directory for cross compiling\n"
2281	else
2282	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2283	printf "\n needed for cross compilation failed"
2284	locat=compile
2285	exit
2286	fi
2287	else
2288	TEMPDIR_COMPILE=$TEMPDIR
2289	fi
2290
2291
2292	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2293	line=""
2294	grep "%depository_path" $config_file > tmp_mrun
2295	while read line
2296	do
2297	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2298	then
2299	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2300	then
2301	global_depository_path=`echo $line \| cut -d" " -s -f2`
2302	fi
2303	fi
2304	done < tmp_mrun
2305
2306	line=""
2307	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2308	while read line
2309	do
2310	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2311	then
2312	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2313	then
2314	local_depository_path=`echo $line \| cut -d" " -s -f2`
2315	fi
2316	fi
2317	done < tmp_mrun
2318
2319	if [[ "$local_depository_path" = "" ]]
2320	then
2321	if [[ "$global_depository_path" != "" ]]
2322	then
2323	local_depository_path=$global_depository_path
2324	else
2325	printf "\n\n +++ no depository path found in configuration file"
2326	printf "\n for local host \"$localhost\" "
2327	printf "\n please set \"\%depository_path\" in configuration file\n"
2328	locat=config_file; exit
2329	fi
2330	fi
2331	eval local_depository_path=$local_depository_path
2332	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2333	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2334
2335
2336	basename=`print $mainprog \| cut -f1 -d"."`
2337	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2338	if [[ ! -f $make_depository ]]
2339	then
2340	printf "\n"
2341	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2342	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2343	else
2344	cp $make_depository $TEMPDIR_COMPILE
2345	cd $TEMPDIR_COMPILE
2346	tar -xf $make_depository > /dev/null 2>&1
2347	cd - > /dev/null
2348	fi
2349
2350	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2351
2352	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
2353	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
2354	# MAKEFILE EINTRAGEN
2355	# cd $TEMPDIR_COMPILE
2356	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
2357	# if [[ "$interface_file" != "" ]]
2358	# then
2359	# interface_file=`echo $interface_file \| cut -d"." -f1`
2360	# mv Makefile Makefile_old
2361	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
2362	# fi
2363	# cd - > /dev/null
2364	else
2365	cp $executable ${TEMPDIR}/a.out
2366	fi
2367
2368
2369	# WECHSEL IN TEMPORAEREN KATALOG
2370	cd $TEMPDIR
2371	printf "\n *** changed to temporary directory: $TEMPDIR"
2372
2373
2374	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2375	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2376	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2377	# ERMITTELN
2378	(( i = 0 ))
2379	while (( i < iout ))
2380	do
2381	(( i = i + 1 ))
2382	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2383	then
2384	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2385	else
2386	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2387	fi
2388	done
2389
2390
2391	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2392	if [[ $do_compile = true ]]
2393	then
2394
2395
2396	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2397	printf "\n\n\n *** compilation starts \n$striche\n"
2398	printf " *** compilation with make using following options:\n"
2399	printf " make depository: $make_depository"
2400	printf " compilername: $compiler_name\n"
2401	printf " options: $fopts\n"
2402	printf " preprocessor-directives: $cpp_options \n"
2403	printf " linker-options: $lopts \n"
2404	printf " source code files: $source_list \n"
2405
2406	if [[ $localhost = nech ]]
2407	then
2408	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2409	cp $TEMPDIR_COMPILE/a.out .
2410	[[ $? != 0 ]] && compile_error=true
2411	rm -rf $TEMPDIR_COMPILE
2412	elif [[ $localhost = ibmh ]]
2413	then
2414	printf " compiler is called via ssh on \"plogin1\" \n"
2415	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2416	[[ ! -f a.out ]] && compile_error=true
2417	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2418	elif [[ $localhost = lcsgib ]]
2419	then
2420	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
2421	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2422	[[ ! -f a.out ]] && compile_error=true
2423	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2424	elif [[ $localhost = lcsgih ]]
2425	then
2426	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
2427	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2428	[[ ! -f a.out ]] && compile_error=true
2429	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2430	else
2431	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
2432	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2433	fi
2434
2435	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2436	then
2437	printf "\n +++ error occured while compiling or linking"
2438	locat=compile
2439
2440	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2441	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2442	# then
2443	exit
2444	# else
2445	# locat=normal
2446	# fi
2447	else
2448	printf "$striche\n *** compilation finished \n"
2449	fi
2450	fi
2451
2452
2453	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2454	if [[ $local_compile = true ]]
2455	then
2456	cd $HOME
2457	rm -rf $TEMPDIR
2458	locat=local_compile; exit
2459	fi
2460
2461
2462	# BEREITSTELLEN DER INPUT-DATEIEN
2463	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2464	(( i = 0 ))
2465	while (( i < iin ))
2466	do
2467	(( i = i + 1 ))
2468	if (( i == 1 ))
2469	then
2470	printf "\n\n *** providing INPUT-files:\n$striche"
2471	fi
2472
2473
2474	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2475	if [[ "${transin[$i]}" = unavailable ]]
2476	then
2477	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2478	then
2479	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2480	printf "\n is not available!"
2481	else
2482	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2483	printf "\n is not available!"
2484	fi
2485	continue
2486	fi
2487
2488	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2489	files_for_pes=false; datentyp=file
2490	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2491	then
2492	files_for_pes=true; datentyp=directory
2493	actionin[$i]=""
2494	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2495	then
2496	actionin[$i]=""
2497	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2498	then
2499	files_for_pes=true; datentyp=directory
2500	actionin[$i]="ar"
2501	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2502	then
2503	actionin[$i]="ar"
2504	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2505	then
2506	files_for_pes=true; datentyp=directory
2507	actionin[$i]="fl"
2508	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2509	then
2510	actionin[$i]="fl"
2511	fi
2512
2513	if [[ $files_for_pes = true ]]
2514	then
2515	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2516	else
2517	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2518	fi
2519
2520	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2521	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2522	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2523	# SERVER ZU HOLEN
2524	if [[ "${actionin[$i]}" = fl ]]
2525	then
2526	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2527	if [[ $files_for_pes = false ]]
2528	then
2529	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2530	then
2531	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2532	got_tmp[$i]=true
2533	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2534	then
2535	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2536	printf "\n *** trying to use backup copy in \"$WORK\" "
2537	cp $WORK/${frelin[$i]} ${localin[$i]}
2538	else
2539	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2540	printf "\n or \"$tmp_data_catalog\" does not exist!"
2541	printf "\n *** trying to get copy from archive"
2542	actionin[$i]=ar
2543	fi
2544	else
2545	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2546	then
2547	mkdir ${localin[$i]}
2548	cd $tmp_data_catalog/${frelin[$i]}
2549	for file in $(ls *)
2550	do
2551	ln $file $TEMPDIR/${localin[$i]}
2552	done
2553	cd $TEMPDIR
2554	got_tmp[$i]=true
2555	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2556	then
2557	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2558	printf "\n *** trying to use backup copy in \"$WORK\" "
2559	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2560	else
2561	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2562	printf "\n or \"$tmp_data_catalog\" does not exist!"
2563	printf "\n *** trying to get copy from archive"
2564	actionin[$i]=ar
2565	fi
2566	fi
2567	fi
2568
2569
2570	# DATEI LIEGT AUF ARCHIV-SERVER
2571	if [[ "${actionin[$i]}" = ar ]]
2572	then
2573
2574	if [[ $files_for_pes = false ]]
2575	then
2576	printf "\n file will be restored from archive-system ($archive_system)!"
2577	else
2578	printf "\n directory will be restored from archive-system ($archive_system)!"
2579	fi
2580
2581	file_restored=false
2582
2583	if [[ $archive_system = asterix ]]
2584	then
2585	do_stagein=true
2586	(( stagein_anz = 0 ))
2587	while [[ $do_stagein = true ]]
2588	do
2589	if [[ $files_for_pes = false ]]
2590	then
2591	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2592	else
2593	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2594	fi
2595	cat STAGEIN_OUTPUT
2596	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2597	then
2598	file_restored=true
2599	do_stagein=false
2600	else
2601	(( stagein_anz = stagein_anz + 1 ))
2602	if (( stagein_anz == 10 ))
2603	then
2604	printf "\n +++ stagein stoped after 10 tries"
2605	locat=stage
2606	exit
2607	fi
2608	printf "\n +++ restoring from archive failed, trying again:"
2609	sleep 900
2610	fi
2611	done
2612	elif [[ $archive_system = DMF ]]
2613	then
2614	if [[ $files_for_pes = false ]]
2615	then
2616	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2617	locat=DMF
2618	exit
2619	else
2620	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2621	cp -r $ARCHIVE/${frelin[$i]} $PWD
2622	file_restored=true
2623	fi
2624	elif [[ $archive_system = tivoli ]]
2625	then
2626	if [[ $files_for_pes = false ]]
2627	then
2628	if [[ $localhost = ibmh ]]
2629	then
2630	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2631	else
2632	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2633	fi
2634	else
2635	(( inode = 0 ))
2636	while (( inode < nodes ))
2637	do
2638	if [[ $localhost = ibmh ]]
2639	then
2640	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2641	else
2642	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2643	fi
2644	(( inode = inode + 1 ))
2645	done
2646	fi
2647	file_restored=true
2648	elif [[ $archive_system = ut ]]
2649	then
2650	if [[ $files_for_pes = false ]]
2651	then
2652	cp $UT/${frelin[$i]} .
2653	else
2654	(( inode = 0 ))
2655	while (( inode < nodes ))
2656	do
2657	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2658	(( inode = inode + 1 ))
2659	done
2660	fi
2661	file_restored=true
2662	else
2663	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2664	locat=rearchive
2665	exit
2666	fi
2667
2668	if [[ $file_restored = true ]]
2669	then
2670
2671	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2672	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2673	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2674	if [[ $files_for_pes = false ]]
2675	then
2676	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2677	else
2678	mkdir $tmp_data_catalog/${frelin[$i]}
2679	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2680	fi
2681	got_tmp[$i]=true
2682
2683	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2684	mv ${frelin[$i]} ${localin[$i]}
2685
2686	fi
2687	fi
2688
2689
2690	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2691	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2692	then
2693
2694	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
2695	then
2696
2697	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
2698	printf "\n file will be provided for $numprocs processors"
2699	mkdir ${localin[$i]}
2700	ival=$numprocs
2701	(( ii = 0 ))
2702	while (( ii <= ival-1 ))
2703	do
2704	if (( ii < 10 ))
2705	then
2706	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
2707	elif (( ii < 100 ))
2708	then
2709	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
2710	elif (( ii < 1000 ))
2711	then
2712	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
2713	else
2714	cp ${absnamein[$i]} ${localin[$i]}/_$ii
2715	fi
2716	(( ii = ii + 1 ))
2717	done
2718
2719	else
2720
2721	if [[ $files_for_pes = true ]]
2722	then
2723
2724	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
2725	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
2726	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
2727	# PER MOVE UMBENANNT WERDEN
2728	printf "\n providing $numprocs files for the respective processors"
2729	mkdir ${localin[$i]}
2730	if [[ $link_local_input = true ]]
2731	then
2732	printf " using ln -f\n"
2733	cd ${absnamein[$i]}
2734	for file in $(ls *)
2735	do
2736	ln -f $file ${localin[$i]}
2737	done
2738	cd $TEMPDIR
2739	fi
2740	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
2741	if [[ ! -f "${localin[$i]}/_0000" ]]
2742	then
2743	if [[ $link_local_input = true ]]
2744	then
2745	printf " ln failed for .../_0000, using cp...\n"
2746	fi
2747	cp -r ${absnamein[$i]}/* ${localin[$i]}
2748	fi
2749
2750	else
2751	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
2752	if [[ $link_local_input = true ]]
2753	then
2754	printf " using ln -f\n"
2755	ln -f ${absnamein[$i]} ${localin[$i]}
2756	fi
2757	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
2758	if [[ ! -f "${localin[$i]}" ]]
2759	then
2760	if [[ $link_local_input = true ]]
2761	then
2762	printf " ln failed, using cp...\n"
2763	fi
2764	cp ${absnamein[$i]} ${localin[$i]}
2765	fi
2766	fi
2767	fi
2768	fi
2769
2770	done
2771	if (( i != 0 ))
2772	then
2773	printf "\n$striche\n *** all INPUT-files provided \n"
2774	fi
2775
2776
2777	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
2778	(( i = 0 ))
2779	while (( i < iic ))
2780	do
2781	(( i = i + 1 ))
2782	if (( i == 1 ))
2783	then
2784	printf "\n\n *** execution of INPUT-commands:\n$striche"
2785	fi
2786	printf "\n >>> ${in_command[$i]}"
2787	eval ${in_command[$i]}
2788	if (( i == iic ))
2789	then
2790	printf "\n$striche\n"
2791	fi
2792	done
2793
2794
2795	# VERBLEIBENDE CPU-ZEIT BERECHNEN
2796	cpurest=${cpumax}.
2797
2798
2799	# START DVR STREAMING SERVER
2800	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
2801	then
2802	if [[ "$dvr_server" != "" ]]
2803	then
2804
2805	printf "\n\n *** preparing the dvr streaming server configuration file"
2806
2807	# Check, if a dvr server is already running
2808	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
2809	if [[ "$running_dvrserver_id" != "" ]]
2810	then
2811
2812	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
2813	printf "\n This server is used instead starting a new one!"
2814	printf "\n If required, script \"process_dvr_output\" has to be run manually."
2815
2816	else
2817
2818	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
2819	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
2820	then
2821	cp ${PALM_BIN}/.dvrserver.config .
2822
2823	# Entering the BASEDIR, UID and GID into this file
2824	user_id=`id -u`
2825	group_id=`id -g`
2826	# & is needed as seperator, because TEMPDIR contains /
2827	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
2828	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
2829	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
2830	mv .dvrserver.3 .dvrserver.config
2831	rm .dvrserver.1 .dvrserver.2
2832
2833	# Start dvr server in background, get his id and print on terminal
2834	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
2835	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
2836	printf "\n *** streaming server with id=$dvrserver_id is started in background"
2837	local_dvrserver_running=.TRUE.
2838	else
2839	printf "\n +++ missing file \".dvrserver.config\" in directory:"
2840	printf "\n \"$PALM_BIN\" "
2841	locat=dvr
2842	exit
2843	fi
2844
2845	fi
2846
2847	else
2848	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
2849	fi
2850	fi
2851
2852
2853	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
2854	# LESEN VON PALM)
2855	cat > ENVPAR << %%END%%
2856	&envpar run_identifier = '$fname', host = '$localhost',
2857	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2858	maximum_cpu_time_allowed = ${cpumax}.,
2859	revision = '$global_revision',
2860	local_dvrserver_running = $local_dvrserver_running /
2861
2862	%%END%%
2863
2864
2865	# PROGRAMMSTART
2866	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
2867	PATH=$PATH:$TEMPDIR
2868
2869	# MPI debug option (argument checking, slows down execution due to increased latency)
2870	if [[ "$mpi_debug" = true ]]
2871	then
2872	export MPI_CHECK_ARGS=1
2873	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
2874	fi
2875
2876	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
2877	then
2878	if [[ "$ENVIRONMENT" = BATCH ]]
2879	then
2880	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
2881	then
2882	printf "\n +++ debug is allowed in interactive mode only"
2883	locat=debug
2884	exit
2885	fi
2886	fi
2887	if [[ $localhost = decalpha ]]
2888	then
2889	dxladebug a.out
2890	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
2891	then
2892
2893	# SETUP THE IBM MPI ENVIRONMENT
2894	export MP_SHARED_MEMORY=yes
2895	export AIXTHREADS_SCOPE=S
2896	export OMP_NUM_THREADS=$threads_per_task
2897	export AUTHSTATE=files
2898	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2899
2900	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
2901	export MP_ADAPTER_USE=shared
2902	export MP_CPU_USE=multiple
2903	export MP_TIMEOUT=1200
2904
2905	unset MP_TASK_AFFINITY
2906
2907	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
2908	#(( ii = 1 ))
2909	#while (( ii <= $numprocs ))
2910	#do
2911	# echo $localhost_realname >> hostfile
2912	# (( ii = ii + 1 ))
2913	#done
2914	#export MP_HOSTFILE=hostfile
2915
2916	if [[ "$LOADLBATCH" = yes ]]
2917	then
2918	totalview poe a.out $ROPTS
2919	else
2920	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2921	export TVDSVRLAUNCHCMD=ssh
2922	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
2923	fi
2924	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
2925	then
2926	# CURRENTLY NO DEBUGGER ON LCSGI
2927	if [[ $run_coupled_model = true ]]
2928	then
2929	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
2930	locat=debug
2931	exit
2932	else
2933	echo "no_coupling" > runfile_atmos
2934	fi
2935	(( ii = $numprocs / $threads_per_task ))
2936	export OMP_NUM_THREADS=$threads_per_task
2937	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
2938	if [[ $threads_per_task != 1 ]]
2939	then
2940	printf "\n threads per task: $threads_per_task"
2941	fi
2942	printf "\n\n"
2943	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
2944	then
2945	# export MPI_LAUNCH_TIMEOUT=360
2946	if [[ "$totalview" = true ]]
2947	then
2948	printf "\n running totalview debugger"
2949	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
2950	else
2951	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
2952	fi
2953	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
2954	then
2955	# ulimit -s 300000 # A too large stack size causes problems
2956	# export MV2_NUM_PORTS=2
2957	# export MV2_CPU_MAPPING=0:1:2:3
2958	mpiexec ./a.out $ROPTS < runfile_atmos
2959	fi
2960	else
2961	printf "\n +++ no debug available on \"$localhost\" "
2962	printf "\n or not implemented in mrun so far"
2963	locat=debug
2964	exit
2965	fi
2966	else
2967	if [[ -n $numprocs ]]
2968	then
2969	# RUNNING THE PROGRAM ON PARALLEL MACHINES
2970	if [[ $(echo $host \| cut -c1-3) = ibm ]]
2971	then
2972	# SETUP THE IBM MPI ENVIRONMENT
2973	if [[ $host != ibmh ]]
2974	then
2975	export MP_SHARED_MEMORY=yes
2976	export AIXTHREAD_SCOPE=S
2977	export OMP_NUM_THREADS=$threads_per_task
2978	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
2979	export AUTHSTATE=files
2980	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
2981	# export MP_PRINTENV=yes
2982
2983	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
2984	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
2985	export MP_WAIT_MODE=poll
2986	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
2987	fi
2988	if [[ "$LOADLBATCH" = yes ]]
2989	then
2990	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
2991	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
2992	then
2993	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
2994	else
2995	if [[ $run_coupled_model = false ]]
2996	then
2997	if [[ "$ocean_file_appendix" = true ]]
2998	then
2999	echo "precursor_ocean" > runfile_atmos
3000	else
3001	echo "precursor_atmos" > runfile_atmos
3002	fi
3003	else
3004	(( iia = $numprocs_atmos / $threads_per_task ))
3005	(( iio = $numprocs_ocean / $threads_per_task ))
3006	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3007	printf "\n using $coupled_mode coupling"
3008	printf "\n\n"
3009	echo "coupled_run $iia $iio" > runfile_atmos
3010	fi
3011	poe ./a.out $ROPTS < runfile_atmos
3012	fi
3013	else
3014	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
3015	then
3016	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3017	elif [[ $localhost = ibmy ]]
3018	then
3019	if [[ -f $hostfile ]]
3020	then
3021	cp $hostfile hostfile
3022	else
3023	(( ii = 1 ))
3024	while (( ii <= $numprocs ))
3025	do
3026	echo $localhost_realname >> hostfile
3027	(( ii = ii + 1 ))
3028	done
3029	fi
3030	export MP_HOSTFILE=hostfile
3031	if [[ $run_coupled_model = false ]]
3032	then
3033	if [[ "$ocean_file_appendix" = true ]]
3034	then
3035	echo "precursor_ocean" > runfile_atmos
3036	else
3037	echo "precursor_atmos" > runfile_atmos
3038	fi
3039	else
3040	(( iia = $numprocs_atmos / $threads_per_task ))
3041	(( iio = $numprocs_ocean / $threads_per_task ))
3042	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3043	printf "\n using $coupled_mode coupling"
3044	printf "\n\n"
3045	echo "coupled_run $iia $iio" > runfile_atmos
3046	fi
3047	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3048
3049	else
3050	if [[ "$host_file" = "" ]]
3051	then
3052	printf "\n +++ no hostfile given in configuration file"
3053	locat=config_file
3054	exit
3055	else
3056	eval host_file=$host_file
3057	fi
3058	export MP_HOSTFILE=$host_file
3059	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3060	fi
3061	fi
3062	elif [[ $host = nech \|\| $host = necriam ]]
3063	then
3064	(( ii = nodes ))
3065	if [[ $ii = 1 ]]
3066	then
3067	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3068	export MPIPROGINF=YES
3069	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3070	echo "*** execution on single node with mpirun"
3071	mpirun -np $numprocs ./a.out $ROPTS
3072	else
3073	(( i = 0 ))
3074	while (( i < ii ))
3075	do
3076	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3077	(( i = i + 1 ))
3078	done
3079
3080	echo "#!/bin/sh" > mpi_exec_shell
3081	echo " " >> mpi_exec_shell
3082	echo "set -u" >> mpi_exec_shell
3083	echo "F_ERRCNT=0" >> mpi_exec_shell
3084	echo "MPIPROGINV=YES" >> mpi_exec_shell
3085	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3086	echo "cpurest=$cpurest" >> mpi_exec_shell
3087	echo "fname=$fname" >> mpi_exec_shell
3088	echo "localhost=$localhost" >> mpi_exec_shell
3089	echo "return_addres=$return_addres" >> mpi_exec_shell
3090	echo "return_username=$return_username" >> mpi_exec_shell
3091	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3092	echo "write_binary=$write_binary" >> mpi_exec_shell
3093	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3094	echo " " >> mpi_exec_shell
3095	echo "export F_ERRCNT" >> mpi_exec_shell
3096	echo "export MPIPROGINV" >> mpi_exec_shell
3097	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3098	echo "export cpurest" >> mpi_exec_shell
3099	echo "export fname" >> mpi_exec_shell
3100	echo "export localhost" >> mpi_exec_shell
3101	echo "export return_addres" >> mpi_exec_shell
3102	echo "export return_username" >> mpi_exec_shell
3103	echo "export tasks_per_node" >> mpi_exec_shell
3104	echo "export write_binary" >> mpi_exec_shell
3105	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3106	echo " " >> mpi_exec_shell
3107	echo "exec ./a.out" >> mpi_exec_shell
3108
3109	chmod u+x mpi_exec_shell
3110	export MPIPROGINF=YES
3111	mpirun -f multinode_config &
3112	wait
3113
3114	fi
3115	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
3116	then
3117
3118	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3119	# DOES NOT EXIST
3120	if [[ $host != lcsgih && $host != lcsgib ]]
3121	then
3122	if [[ -f $hostfile ]]
3123	then
3124	cp $hostfile hostfile
3125	else
3126	(( ii = 1 ))
3127	while (( ii <= $numprocs / $threads_per_task ))
3128	do
3129	echo $localhost_realname >> hostfile
3130	(( ii = ii + 1 ))
3131	done
3132	fi
3133	eval zeile=\"`head -n $ii hostfile`\"
3134	printf "\n *** running on: $zeile"
3135	fi
3136
3137	(( ii = $numprocs / $threads_per_task ))
3138	export OMP_NUM_THREADS=$threads_per_task
3139	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3140	if [[ $threads_per_task != 1 ]]
3141	then
3142	printf "\n threads per task: $threads_per_task"
3143	fi
3144	if [[ $run_coupled_model = false ]]
3145	then
3146	if [[ "$ocean_file_appendix" = true ]]
3147	then
3148	echo "precursor_ocean" > runfile_atmos
3149	else
3150	echo "precursor_atmos" > runfile_atmos
3151	fi
3152	printf "\n\n"
3153	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3154	then
3155	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3156	then
3157	# export MPI_LAUNCH_TIMEOUT=360
3158	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3159	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3160	then
3161	# ulimit -s 300000 # A too large stack size causes problems
3162	# export MV2_NUM_PORTS=2
3163	# export MV2_CPU_MAPPING=0:1:2:3
3164	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
3165	fi
3166	elif [[ $host = lcxt4 ]]
3167	then
3168	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3169	else
3170	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3171	fi
3172	else
3173
3174	# currently there is no full MPI-2 support on ICE and XT4
3175	(( iia = $numprocs_atmos / $threads_per_task ))
3176	(( iio = $numprocs_ocean / $threads_per_task ))
3177	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3178	printf "\n using $coupled_mode coupling"
3179	printf "\n\n"
3180
3181	if [[ $coupled_mode = "mpi2" ]]
3182	then
3183	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3184	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3185	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3186	then
3187
3188	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3189	then
3190	# export MPI_LAUNCH_TIMEOUT=360
3191	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3192	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3193	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3194	then
3195	# ulimit -s 300000 # A too large stack size causes problems
3196	# export MV2_NUM_PORTS=2
3197	# export MV2_CPU_MAPPING=0:1:2:3
3198	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3199	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3200	fi
3201
3202	elif [[ $host = lcxt4 ]]
3203	then
3204
3205	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3206	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3207
3208	else
3209	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3210	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3211	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3212	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3213	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3214	fi
3215	wait
3216
3217	else
3218
3219	echo "coupled_run $iia $iio" > runfile_atmos
3220	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3221	then
3222
3223	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3224	then
3225	# export MPI_LAUNCH_TIMEOUT=360
3226	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3227	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3228	then
3229	# ulimit -s 300000 # A too large stack size causes problems
3230	# export MV2_NUM_PORTS=2
3231	# export MV2_CPU_MAPPING=0:1:2:3
3232	mpiexec ./a.out $ROPTS < runfile_atmos
3233	fi
3234
3235	elif [[ $host = lcxt4 ]]
3236	then
3237
3238	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3239
3240	fi
3241	wait
3242	fi
3243
3244	# if [[ $scirocco = true ]]
3245	# then
3246	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
3247	# else
3248	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
3249	# fi
3250	fi
3251	elif [[ $host = decalpha ]]
3252	then
3253	dmpirun -np $numprocs a.out $ROPTS
3254	elif [[ $host = lctit ]]
3255	then
3256	export runfile=runfile.$kennung
3257
3258	echo "cd $PWD" > $runfile
3259	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
3260	echo "export cpurest=$cpurest" >> $runfile
3261	echo "export fname=$fname" >> $runfile
3262	echo "export localhost=$localhost" >> $runfile
3263	echo "export return_addres=$return_addres" >> $runfile
3264	echo "export return_username=$return_username" >> $runfile
3265	echo "export tasks_per_node=$tasks_per_node" >> $runfile
3266	echo "export write_binary=$write_binary" >> $runfile
3267	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
3268	echo "./a.out" >> $runfile
3269	chmod u+x $runfile
3270
3271	if [[ "$QUEUE" = interactive ]]
3272	then
3273	mpirun -np $numprocs a.out $ROPTS
3274	else
3275	(( mem_tsubame = $memory / 1024.0 ))
3276	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
3277	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
3278	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3279	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
3280	fi
3281
3282	rm $runfile
3283	else
3284	mpprun -n $numprocs a.out $ROPTS
3285	fi
3286	[[ $? != 0 ]] && execution_error=true
3287
3288
3289	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3290	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3291	then
3292	apprentice
3293	fi
3294	else
3295	a.out $ROPTS
3296	fi
3297	fi
3298	if [[ $? != 0 \|\| $execution_error = true ]]
3299	then
3300
3301	# ABBRUCH BEI LAUFZEITFEHLER
3302	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3303	printf "\n +++ runtime error occured"
3304	locat=execution
3305	exit
3306	else
3307	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3308	printf "\n$striche\n *** execution finished \n"
3309
3310	# Stop the dvr streaming server and process the dvr output in order
3311	# to create dvrs- and html-files containing all streams
3312	if [[ "$dvrserver_id" != "" ]]
3313	then
3314	kill $dvrserver_id
3315	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3316
3317	# If there is a directory, data have been output by the
3318	# streaming server. Otherwise, user has chosen dvrp_output=local
3319	if [[ -d DATA_DVR ]]
3320	then
3321
3322	# Add the current dvr configuration file to the dvr output
3323	# directory
3324	cp .dvrserver.config DATA_DVR
3325
3326	# Process the dvr output (option -s for also generating
3327	# sequence mode data)
3328	process_dvr_output -d DATA_DVR -f $fname -s
3329
3330	else
3331
3332	# Process the local output
3333	process_dvr_output -l -d DATA_DVR -f $fname
3334
3335	fi
3336
3337	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3338	then
3339
3340	# Process dvr output generated in local mode (dvrp_output=local)
3341	process_dvr_output -l -d DATA_DVR -f $fname
3342
3343	fi
3344	fi
3345
3346
3347
3348	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3349	(( i = 0 ))
3350	while (( i < ioc ))
3351	do
3352	(( i = i + 1 ))
3353	if (( i == 1 ))
3354	then
3355	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3356	fi
3357	printf "\n >>> ${out_command[$i]}"
3358	eval ${out_command[$i]}
3359	if (( i == ioc ))
3360	then
3361	printf "\n$striche\n"
3362	fi
3363	done
3364
3365
3366	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3367	if [[ $do_trace = true ]]
3368	then
3369	printf "\n\n"
3370	ls -al
3371	fi
3372
3373
3374
3375	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3376	(( i = 0 ))
3377	while (( i < iout ))
3378	do
3379	(( i = i + 1 ))
3380	if (( i == 1 ))
3381	then
3382	printf "\n\n *** saving OUTPUT-files:\n$striche"
3383	fi
3384
3385	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3386	files_for_pes=false; filetyp=file
3387	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3388	then
3389	files_for_pes=true; filetyp=directory
3390	actionout[$i]=""
3391	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3392	then
3393	actionout[$i]=""
3394	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3395	then
3396	files_for_pes=true; filetyp=directory
3397	actionout[$i]="ar"
3398	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3399	then
3400	actionout[$i]="ar"
3401	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3402	then
3403	files_for_pes=true; filetyp=directory
3404	actionout[$i]="fl"
3405	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3406	then
3407	actionout[$i]="fl"
3408	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3409	then
3410	files_for_pes=true; filetyp=directory
3411	actionout[$i]="tr"
3412	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3413	then
3414	actionout[$i]="tr"
3415	fi
3416
3417	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3418	then
3419	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3420	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3421	then
3422	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3423	else
3424
3425
3426	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3427	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3428	# REMOTE-RECHNUNGEN
3429	if [[ "${actionout[$i]}" = tr ]]
3430	then
3431	if [[ $localhost != $fromhost ]]
3432	then
3433	if [[ $files_for_pes = false ]]
3434	then
3435	cps=""
3436	cst=""
3437	else
3438	cps=-c
3439	cst="/"
3440	fi
3441	if [[ $localhost = ibmb \|\| $localhost = nech ]]
3442	then
3443
3444	# TRANSFER IN EIGENSTAENDIGEM JOB
3445	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3446	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3447	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3448	if [[ $files_for_pes = false ]]
3449	then
3450	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3451	else
3452	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3453	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3454	fi
3455
3456	echo "set -x" > transfer_${localout[$i]}
3457	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3458
3459	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3460	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3461	printf "\n or higher cycle\n"
3462	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3463
3464	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3465
3466	if [[ $localhost = nech ]]
3467	then
3468	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3469	else
3470	if [[ "$LOGNAME" = b323013 ]]
3471	then
3472	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3473	else
3474	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3475	fi
3476	fi
3477
3478	else
3479
3480	# TRANSFER INNERHALB DIESES JOBS
3481	transfer_failed=false
3482	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3483	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3484	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3485	[[ $? != 0 ]] && transfer_failed=true
3486
3487	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3488	# LOKALER MASCHINE ANLEGEN
3489	if [[ $transfer_failed = true ]]
3490	then
3491	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3492	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3493
3494	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3495	# ANLEGEN.
3496	eval local_catalog=${pathout[$i]}
3497	if [[ ! -d $local_catalog ]]
3498	then
3499	printf " *** local directory does not exist. Trying to create:\n"
3500	printf " $local_catalog \n"
3501	mkdir -p $local_catalog
3502	fi
3503	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3504	transfer_problems=true
3505	fi
3506	fi
3507	else
3508
3509	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3510	actionout[$i]=""
3511	fi
3512	fi
3513
3514
3515	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3516	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3517	# REMOTE-RECHNUNGEN
3518	if [[ "${actionout[$i]}" = tra ]]
3519	then
3520	if [[ $localhost != $fromhost ]]
3521	then
3522	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
3523	then
3524
3525	# TRANSFER IN EIGENSTAENDIGEM JOB
3526	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3527	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3528	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3529	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3530
3531	echo "set -x" > transfer_${localout[$i]}
3532	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3533
3534	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3535	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3536	printf "\n or higher cycle\n"
3537	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3538
3539	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3540
3541	if [[ $localhost = nech ]]
3542	then
3543	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3544	else
3545	if [[ $LOGNAME = b323013 ]]
3546	then
3547	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3548	else
3549	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3550	fi
3551	fi
3552
3553	else
3554
3555	# TRANSFER INNERHALB DIESES JOBS
3556	transfer_failed=false
3557	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3558	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3559	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3560	[[ $? != 0 ]] && transfer_failed=true
3561
3562	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3563	# LOKALER MASCHINE ANLEGEN
3564	if [[ $transfer_failed = true ]]
3565	then
3566	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3567	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3568
3569	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3570	# ANLEGEN
3571	eval local_catalog=${pathout[$i]}
3572	if [[ ! -d $local_catalog ]]
3573	then
3574	printf " *** local directory does not exist. Trying to create:\n"
3575	printf " $local_catalog \n"
3576	mkdir -p $local_catalog
3577	fi
3578
3579	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3580	transfer_problems=true
3581	fi
3582	fi
3583	else
3584
3585	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
3586	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
3587	actionout[$i]=a
3588	fi
3589	fi
3590
3591
3592	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
3593	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
3594	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
3595	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
3596	if [[ "${actionout[$i]}" = fl ]]
3597	then
3598	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3599	chmod g+rx $tmp_data_catalog
3600	if [[ $files_for_pes = false ]]
3601	then
3602	printf "\n >>> OUTPUT: ${localout[$i]} to"
3603	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3604	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
3605	else
3606	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
3607	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
3608	mkdir $tmp_data_catalog/${frelout[$i]}
3609	cd ${localout[$i]}
3610	for file in $(ls *)
3611	do
3612	ln -f $file $tmp_data_catalog/${frelout[$i]}
3613	done
3614	cd $TEMPDIR
3615	fi
3616
3617
3618	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
3619	if [[ $store_on_archive_system = true ]]
3620	then
3621
3622	if [[ $archive_system = asterix ]]
3623	then
3624	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3625	if [[ $files_for_pes = false ]]
3626	then
3627	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3628	else
3629	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3630	fi
3631	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3632	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
3633	echo "then" >> archive_${frelout[$i]}
3634	echo " do_stageout=false" >> archive_${frelout[$i]}
3635	echo "else" >> archive_${frelout[$i]}
3636	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
3637	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
3638	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
3639	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
3640	if [[ $files_for_pes = false ]]
3641	then
3642	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
3643	else
3644	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
3645	fi
3646	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
3647	echo "fi" >> archive_${frelout[$i]}
3648	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
3649	elif [[ $archive_system = DMF ]]
3650	then
3651	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3652	if [[ $files_for_pes = false ]]
3653	then
3654	printf "\n +++ archiving of single files impossible with $archive_system !\n"
3655	locat=DMF
3656	exit
3657	else
3658	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
3659	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
3660	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
3661	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
3662	fi
3663	elif [[ $archive_system = tivoli ]]
3664	then
3665	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3666	if [[ $files_for_pes = false ]]
3667	then
3668	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3669	echo "set -x" >> archive_${frelout[$i]}
3670	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3671	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3672	else
3673
3674	echo "set -x" >> archive_${frelout[$i]}
3675	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
3676	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3677	cd $tmp_data_catalog
3678	all_files=`ls -1 ${frelout[$i]}/*`
3679	cd - > /dev/null
3680	(( inode = 0 ))
3681	(( tp1 = tasks_per_node + 1 ))
3682	while (( inode < nodes ))
3683	do
3684	# echo "*** all_files = \"$all_files\" "
3685	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3686	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3687	# echo "*** tasks_per_node = \"$tasks_per_node\" "
3688	# echo "*** files = \"$files\" "
3689	# echo "*** all_files = \"$all_files\" "
3690	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3691	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3692	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
3693	(( inode = inode + 1 ))
3694	done
3695	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3696	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3697	fi
3698	elif [[ $archive_system = ut ]]
3699	then
3700	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
3701	if [[ $files_for_pes = false ]]
3702	then
3703	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3704	echo "set -x" >> archive_${frelout[$i]}
3705	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3706	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3707	else
3708
3709	echo "set -x" >> archive_${frelout[$i]}
3710	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
3711	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
3712	cd $tmp_data_catalog
3713	all_files=`ls -1 ${frelout[$i]}/*`
3714	cd - > /dev/null
3715	(( inode = 0 ))
3716	(( tp1 = tasks_per_node + 1 ))
3717	while (( inode < nodes ))
3718	do
3719	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
3720	all_files=`echo $all_files \| cut -d" " -f$tp1-`
3721	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
3722	(( inode = inode + 1 ))
3723	done
3724	fi
3725	elif [[ $archive_system = none ]]
3726	then
3727	printf " +++ archiving on $localhost not available!\n"
3728	fi
3729
3730	if [[ $archive_system != none ]]
3731	then
3732	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
3733	then
3734	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3735	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3736	elif [[ $localhost = nech ]]
3737	then
3738	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3739	fi
3740	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3741	fi
3742	else
3743	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
3744	fi
3745
3746
3747	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
3748	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3749	if [[ $files_for_pes = false ]]
3750	then
3751	cat /dev/null > ${pathout[$i]}
3752	else
3753	mkdir -p ${pathout[$i]}
3754	fi
3755
3756	fi
3757
3758
3759	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
3760	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
3761	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
3762	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
3763	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
3764	# GEMAESSEN ARCHIVIERUNGEN GESETZT
3765	if [[ "${actionout[$i]}" = ar ]]
3766	then
3767	if [[ $files_for_pes = false ]]
3768	then
3769	printf "\n >>> OUTPUT: ${localout[$i]} to"
3770	printf "\n ${pathout[$i]}"
3771	printf "\n File will be copied to archive-system ($archive_system) !\n"
3772	else
3773	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
3774	printf "\n ${pathout[$i]}"
3775	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
3776	fi
3777	mv ${localout[$i]} ${frelout[$i]}
3778
3779	file_saved=false
3780
3781	if [[ $archive_system = asterix ]]
3782	then
3783	do_stageout=true
3784	(( stageout_anz = 0 ))
3785	while [[ $do_stageout = true ]]
3786	do
3787	if [[ $files_for_pes = false ]]
3788	then
3789	stageout ${frelout[$i]} > STAGE_OUTPUT
3790	else
3791	stageout -t ${frelout[$i]} > STAGE_OUTPUT
3792	fi
3793	cat STAGE_OUTPUT
3794	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
3795	then
3796	file_saved=true
3797	do_stageout=false
3798	else
3799	if [[ $files_for_pes = false ]]
3800	then
3801	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
3802	else
3803	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
3804	fi
3805	(( stageout_anz = stageout_anz + 1 ))
3806	if (( stageout_anz == 10 ))
3807	then
3808	printf "\n +++ stoped after 10 unsuccessful tries!"
3809	archive_save=false
3810	do_stageout=false
3811	else
3812	printf "\n *** new try to store on archive after 15 min:"
3813	sleep 900
3814	fi
3815	fi
3816	done
3817	elif [[ $archive_system = DMF ]]
3818	then
3819	if [[ $files_for_pes = false ]]
3820	then
3821	printf "\n +++ archiving of single files impossible on $archive_system!\n"
3822	locat=DMF
3823	exit
3824	else
3825	rm -rf $ARCHIVE/${frelout[$i]}
3826	cp -r ${frelout[$i]} $ARCHIVE
3827	fi
3828	file_saved=true
3829	elif [[ $archive_system = tivoli ]]
3830	then
3831	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3832	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3833	# GELEGT WERDEN
3834	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3835	chmod g+rx $tmp_data_catalog
3836	if [[ $files_for_pes = false ]]
3837	then
3838	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3839	else
3840	mkdir $tmp_data_catalog/${frelout[$i]}
3841	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3842	fi
3843
3844	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3845	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3846	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3847	if [[ $files_for_pes = false ]]
3848	then
3849	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3850	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3851	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
3852	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3853	else
3854	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3855	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3856	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3857	fi
3858
3859	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
3860	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3861	file_saved=true
3862
3863	elif [[ $archive_system = ut ]]
3864	then
3865	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
3866	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
3867	# GELEGT WERDEN
3868	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
3869	chmod g+rx $tmp_data_catalog
3870	if [[ $files_for_pes = false ]]
3871	then
3872	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
3873	else
3874	mkdir $tmp_data_catalog/${frelout[$i]}
3875	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
3876	fi
3877
3878	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
3879	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
3880	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
3881	if [[ $files_for_pes = false ]]
3882	then
3883	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
3884	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3885	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
3886	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3887	else
3888	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
3889	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
3890	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
3891	fi
3892
3893	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
3894	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
3895	file_saved=true
3896
3897	else
3898	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
3899	archive_save=false
3900	fi
3901	if [[ $file_saved = true ]]
3902	then
3903	if [[ $files_for_pes = false ]]
3904	then
3905	cat /dev/null > ${pathout[$i]}
3906	else
3907	mkdir -p ${pathout[$i]}
3908	fi
3909	fi
3910	fi
3911
3912	# APPEND AUF LOKALER MASCHINE
3913	if [[ "${actionout[$i]}" = "a" ]]
3914	then
3915	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
3916	cat ${localout[$i]} >> ${pathout[$i]}
3917	fi
3918
3919	# KOPIEREN AUF LOKALER MASCHINE
3920	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
3921	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
3922	then
3923
3924	# KOPIEREN AUF EINPROZESSORMASCHINE
3925	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
3926	then
3927	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
3928	if [[ $link_local_output = true ]]
3929	then
3930	printf " using ln -f\n"
3931	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3932	fi
3933	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3934	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
3935	then
3936	if [[ $link_local_output = true ]]
3937	then
3938	printf " ln failed, using cp...\n"
3939	fi
3940	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
3941	fi
3942	else
3943	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
3944	if [[ $link_local_output = true ]]
3945	then
3946	printf " using ln -f\n"
3947	ln -f ${localout[$i]} ${pathout[$i]}
3948	fi
3949	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
3950	if [[ ! -f "${pathout[$i]}" ]]
3951	then
3952	if [[ $link_local_output = true ]]
3953	then
3954	printf " ln failed, using cp...\n"
3955	fi
3956	cp ${localout[$i]} ${pathout[$i]}
3957	fi
3958	fi
3959
3960	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
3961	then
3962
3963	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3964	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
3965	# WIRD DANN KOPIERT
3966	# PER MOVE UMBENANNT WERDEN
3967	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
3968	if [[ $link_local_output = true ]]
3969	then
3970	printf " using ln -f\n"
3971	mkdir ${pathout[$i]}
3972	cd ${localout[$i]}
3973	for file in $(ls *)
3974	do
3975	ln -f $file ${pathout[$i]}
3976	done
3977	cd $TEMPDIR
3978	fi
3979	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
3980	if [[ ! -f "${pathout[$i]}/_0000" ]]
3981	then
3982	if [[ $link_local_output = true ]]
3983	then
3984	printf " ln failed for .../_0000, using cp...\n"
3985	fi
3986	cp -r ${localout[$i]} ${pathout[$i]}
3987	fi
3988
3989	fi
3990	fi
3991	done
3992	if (( i != 0 ))
3993	then
3994	if [[ $transfer_problems = true ]]
3995	then
3996	printf "\n$striche\n *** OUTPUT-files saved"
3997	printf "\n +++ WARNING: some data transfers failed! \n"
3998	else
3999	printf "\n$striche\n *** all OUTPUT-files saved \n"
4000	fi
4001	fi
4002
4003
4004	# EVENTUELL FOLGEJOB STARTEN
4005	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4006	if [[ -f CONTINUE_RUN ]]
4007	then
4008
4009	if [[ $archive_save = true ]]
4010	then
4011
4012	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4013	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4014	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4015	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4016	# HANDEN
4017	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4018	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4019	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4020	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4021	then
4022	mc=`echo $mc \| sed 's/#/f/g'`
4023	fi
4024
4025
4026	# JOB STARTEN
4027	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4028	echo " $mc"
4029	printf "\n$striche\n"
4030	if [[ $localhost != $fromhost ]]
4031	then
4032
4033	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
4034	then
4035	echo "*** ssh will be used to initiate restart-runs!"
4036	echo " return_addres=\"$return_addres\" "
4037	echo " return_username=\"$return_username\" "
4038	if [[ $return_addres = 172.20.25.41 ]]
4039	then
4040	# WORKAROUND AUF SCIROCCO AM TIT
4041	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
4042	else
4043	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4044	fi
4045	else
4046	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4047	locat=restart; exit
4048	fi
4049
4050	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4051	# DER AKTUELLE JOB ENDET
4052	sleep 30
4053
4054	else
4055
4056	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4057	# RUFEN WERDEN, AUSSER AUF lcfimm
4058	cd $LOCAL_PWD
4059	if [[ $localhost = lcfimm ]]
4060	then
4061	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4062	else
4063	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4064	fi
4065	cd - > /dev/null
4066	fi
4067	printf "\n$striche\n *** restart-run initiated \n"
4068
4069
4070	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4071	# GEHOLT WORDEN SIND, LOESCHEN
4072	(( i = 0 ))
4073	while (( i < iin ))
4074	do
4075	(( i = i + 1 ))
4076	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4077	then
4078	rm -r $tmp_data_catalog/${frelin[$i]}
4079	fi
4080	done
4081
4082	else
4083
4084	printf "\n +++ no restart-run possible, since errors occured"
4085	printf "\n during the archive process"
4086	fi
4087
4088	fi
4089
4090
4091
4092	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4093	if [[ "$email_notification" != "none" ]]
4094	then
4095
4096	if [[ $localhost != $fromhost ]]
4097	then
4098	if [[ -f CONTINUE_RUN ]]
4099	then
4100	echo "PALM restart run necessary" > email_text
4101	echo "description header of actual run:" >> email_text
4102	cat CONTINUE_RUN >> email_text
4103	echo "mrun-command to restart:" >> email_text
4104	echo "$mc" >> email_text
4105	else
4106	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4107	fi
4108	mail $email_notification < email_text
4109	printf "\n *** email notification sent to \"$email_notification\" "
4110	fi
4111	fi
4112
4113
4114
4115	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4116	cd $HOME
4117	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4118
4119	else
4120
4121
4122	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4123	# CHENDE AKTIONEN DURCHGEFUEHRT
4124
4125	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4126	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4127	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4128	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4129	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4130	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4131	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4132	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4133	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4134	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4135	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4136	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4137	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4138	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4139	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4140	if [[ $use_openmp = true ]]
4141	then
4142	mrun_com=${mrun_com}" -O"
4143	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
4144	else
4145	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4146	fi
4147	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
4148	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4149	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4150	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4151	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4152	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4153	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4154	if [[ $do_remote = true ]]
4155	then
4156	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4157	fi
4158
4159
4160	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4161	jobfile=jobfile.$RANDOM
4162
4163
4164	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4165	echo "mkdir $TEMPDIR" >> $jobfile
4166	echo "cd $TEMPDIR" >> $jobfile
4167
4168
4169	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4170	if [[ $do_trace = true ]]
4171	then
4172	echo "set -x" >> $jobfile
4173	else
4174	echo "set +vx" >> $jobfile
4175	fi
4176
4177
4178	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4179	# DATEI FUER DEN JOB
4180	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
4181	then
4182
4183	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4184	# KOPIEREN
4185	if [[ $restart_run != true ]]
4186	then
4187	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4188	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4189	fi
4190
4191	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4192	echo "set -x" >> $jobfile
4193	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4194	echo "export SOURCES_COMPLETE=true" >> $jobfile
4195
4196	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4197	# ARBEITSVERZEICHNIS VERSCHIEBEN
4198	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4199	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4200	echo "execute_mrun=true" >> $jobfile
4201	echo " " >> $jobfile
4202
4203	else
4204
4205	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4206	# SOWIE GEGEBENENFALLS DES MAKEFILES
4207	if [[ $do_compile = true ]]
4208	then
4209
4210	source_catalog=SOURCES_FOR_RUN_$fname
4211
4212	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4213	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4214	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4215	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4216	echo "export SOURCES_COMPLETE=true" >> $jobfile
4217	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4218
4219	for filename in $source_list
4220	do
4221	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4222	echo "cat > $filename << \"%END%\"" >> $jobfile
4223	cat $source_catalog/$filename >> $jobfile
4224	echo " " >> $jobfile
4225	echo "%END%" >> $jobfile
4226	echo " " >> $jobfile
4227	done
4228
4229	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4230	echo "cat > Makefile << \"%END%\"" >> $jobfile
4231	cat $source_catalog/Makefile >> $jobfile
4232	echo " " >> $jobfile
4233	echo "%END%" >> $jobfile
4234	echo " " >> $jobfile
4235
4236	echo "cd - > /dev/null" >> $jobfile
4237
4238	fi
4239
4240
4241	# ABSPEICHERN DER KONFIGURATIONSDATEI
4242	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4243	echo "cat > $config_file << \"%END%\"" >> $jobfile
4244	cat $config_file >> $jobfile
4245	echo "%END%" >> $jobfile
4246	echo " " >> $jobfile
4247
4248
4249	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4250	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4251	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4252	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4253	echo "%END%" >> $jobfile
4254	if [[ $host = lctit ]]
4255	then
4256	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
4257	echo "mv mrun_new $mrun_script_name" >> $jobfile
4258	fi
4259	echo "chmod u+x $mrun_script_name" >> $jobfile
4260	echo "execute_mrun=true" >> $jobfile
4261	echo " " >> $jobfile
4262
4263	fi
4264
4265
4266	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4267	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4268	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4269	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4270	if [[ $do_remote = true ]]
4271	then
4272	(( i = 0 ))
4273	while (( i < iin ))
4274	do
4275	(( i = i + 1 ))
4276	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4277	if [[ "${transin[$i]}" = job ]]
4278	then
4279	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4280	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4281	echo " " >> $jobfile
4282	echo "%END%" >> $jobfile
4283	else
4284	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4285	fi
4286
4287	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4288	echo "if [[ \$? = 1 ]]" >> $jobfile
4289	echo "then" >> $jobfile
4290	echo " echo \" \" " >> $jobfile
4291	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4292	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4293	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4294	echo " execute_mrun=false" >> $jobfile
4295	echo "fi" >> $jobfile
4296	done
4297	fi
4298
4299	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4300	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4301	echo "LOCAL_PWD=$working_directory" >> $jobfile
4302	echo "export LOCAL_PWD" >> $jobfile
4303
4304	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4305	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4306	echo "export LOCAL_MRUN_PATH" >> $jobfile
4307
4308	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4309	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4310	then
4311	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4312	fi
4313
4314	# MRUN AUF ZIELRECHNER AUFRUFEN
4315	echo "set -x" >> $jobfile
4316	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4317
4318	echo 'ls -al; echo `pwd`' >> $jobfile
4319	echo "cd \$HOME" >> $jobfile
4320	echo "rm -rf $TEMPDIR" >> $jobfile
4321
4322
4323
4324
4325	# JOB PER SUBJOB STARTEN
4326	if [[ $silent = false ]]
4327	then
4328	printf "\n "
4329	else
4330	printf "\n\n"
4331	fi
4332
4333	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4334	rm -rf $jobfile
4335
4336
4337	fi # ENDE REMOTE-TEIL
4338
4339
4340
4341	# ENDE DER PROZEDUR

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