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source: palm/trunk/SCRIPTS/mrun @ 1279

Last change on this file since 1279 was 1279, checked in by raasch, 10 years ago
tasks_per_node must not be an integral divisor of numprocs any more
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# tasks_per_node must not be an integral divisor of numprocs any more. This was done
25	# in order to remove annoying restrictions concerning the number of processors which
26	# appear on machines with larger nodes (e.g. containing 24 cores). Without this
27	# restriction, one of the nodes will not be completely filled with tasks. A respective
28	# warning is given.
29	#
30	# Former revisions:
31	# -----------------
32	# $Id: mrun 1279 2014-01-28 12:10:14Z raasch $
33	#
34	# 1274 2014-01-09 13:14:54Z heinze
35	# adjustments for lccrayh
36	#
37	# 1272 2014-01-08 10:19:32Z witha
38	# small adjustment for lcflow
39	#
40	# 1270 2013-12-16 11:05:01Z fricke
41	# call of combine_plot_fields adjusted for lccrayb/lccrayh
42	#
43	# 1255 2013-11-07 14:43:35Z raasch
44	# further adjustments for lccrayb remote access
45	#
46	# 1241 2013-10-30 11:36:58Z heinze
47	# Enable use of nudging input and input of large scale forcing from
48	# external files
49	#
50	# 1229 2013-09-20 06:55:19Z raasch
51	# further adjustments for lccrayb
52	#
53	# 1224 2013-09-16 07:27:23Z raasch
54	# first adjustments for lccrayb
55	#
56	# 1210 2013-08-14 10:58:20Z raasch
57	# fftw support added
58	#
59	# 1201 2013-07-10 16:17:59Z witha
60	# adjustments for Forwind cluster (lcflow)
61	#
62	# 1199 2013-07-05 14:52:22Z raasch
63	# adjustments for CSC Helsinki (lccrayf),
64	# executables for batch jobs can be created in advance, in order to avoid calling
65	# the compiler within the batch job (only works if batch jobs are submitted on
66	# local host)
67	#
68	# 1190 2013-06-25 09:39:21Z heinze
69	# enable use of automatic restarts for ibmh
70	# use of cluster/express queue enabled (ibmh)
71	#
72	# 1124 2013-04-09 15:46:52Z raasch
73	# variable "memory" is exported via typeset option -x, because otherwise an unknown
74	# side effect may lead to data loss while getopts is reading the script-option arguments
75	#
76	# 1122 2013-04-09 08:37:16Z heinze
77	# Bugfix: change type of variable last_char
78	#
79	# 1119 2013-04-05 15:11:19Z raasch
80	# Bugfix for setting -T option for subjob
81	#
82	# 1108 2013-03-05 07:03:32Z raasch
83	# bugfix for coupled runs on lckyut/lckyuh
84	#
85	# 1106 2013-03-04 05:31:38Z raasch
86	# --stdin argument for mpiexec on lckyuh
87	# -y and -Y settings output to header
88	#
89	# 1103 2013-02-20 02:15:53Z raasch
90	# default script runs again under ksh, because of unsolved problems with read
91	# from stdin: when bash script is called from a ksh, message "read error: 0:
92	# Resource temporarily unavailable" appears and script does not stop,
93	# further bash compatibility adjustments,
94	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
95	# on lckyuh, but mrun does not terminate and issues a warning instead
96	#
97	# 1101 2013-02-17 10:20:21Z raasch
98	# script now running under bash instead of ksh, which required small adjustments
99	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
100	# read from stdin),
101	# cross compilername on lckyuh compute nodes replaced by real compiler name
102	#
103	# 1099 2013-02-10 01:47:43Z raasch
104	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
105	# and for Forwind cluster (lcflow)
106	# small further adjustments for lckyut
107	#
108	# 1094 2013-02-03 01:52:12Z raasch
109	# explicit ssh/scp port can be set in config file with environment variable
110	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
111	# decalpha parts (yonsei) removed
112	#
113	# 2013-02-02 07:06:13Z raasch
114	# adjustments for Kyushu-University computing center (lckyut - tatara)
115	#
116	# 1083 2013-01-04 10:22:09Z maronga
117	# bugfix in parameter file check (read %cpp_options was missing)
118	#
119	# 1069 2012-11-28 16:18:43Z maronga
120	# bugfix: coupling mode was always set to mpi2, typos removed
121	#
122	# 1058 2012-11-21 07:00:35Z raasch
123	# Intel inspector (inspxe) is given the number of PEs instead of the number of
124	# nodes
125	#
126	# 1046 2012-11-09 14:38:45Z maronga
127	# code put under GPL (PALM 3.9)
128	#
129	# 21/03/94 - Siggi - first version finished
130	# 03/03/94 - Siggi - script development started
131	#
132	#--------------------------------------------------------------------------------#
133	# mrun - script for running PALM jobs
134	#--------------------------------------------------------------------------------#
135
136
137
138	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
139
140	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
141	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
142	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
143
144	AddFilenames=""
145	additional_conditions=""
146	add_source_path=""
147	afname=""
148	archive_save=true
149	archive_system=none
150	check_namelist_files=true
151	combine_plot_fields=true
152	compiler_name=""
153	cond1=""
154	cond2=""
155	config_file=.mrun.config
156	coupled_dist=""
157	coupled_mode="mpi1"
158	cpp_opts=""
159	cpp_options=""
160	cpumax=0
161	cpurest=0
162	create_executable_for_batch=false
163	delete_temporary_catalog=true
164	do_batch=false
165	do_compile=true
166	do_remote=false
167	do_stagein=true
168	do_stageout=true
169	do_trace=false
170	email_notification="none"
171	exclude=""
172	executable=""
173	execution_error=false
174	fftw_inc=""
175	fftw_lib=""
176	fftw_support=false
177	fimm=false
178	fname=test
179	fromhost=""
180	global_revision=""
181	group_number=none
182	host=""
183	host_file=""
184	hp=""
185	ignore_archive_error=false
186	input_list=""
187	interpreted_config_file=""
188	job_catalog="~/job_queue"
189	job_on_file=""
190	keep_data_from_previous_run=false
191	link_local_input=false
192	link_local_output=false
193	localhost_realname=$(hostname)
194	local_compile=false
195	local_dvrserver_running=.FALSE.
196	locat=normal
197	mainprog=""
198	makefile=""
199	max_par_io_str=""
200	mc=$0
201	while [[ $(echo $mc \| grep -c "/") != 0 ]]
202	do
203	mc=`echo $mc \| cut -f2- -d"/"`
204	done
205	module_calls=""
206	mrun_script_name=$mc
207	netcdf_inc=""
208	netcdf_lib=""
209	netcdf_support=false
210	node_usage=default
211	numprocs=""
212	numprocs_atmos=0
213	numprocs_ocean=0
214	OOPT=""
215	openmp=false
216	output_list=""
217	package_list=""
218	punkte="..........................................................."
219	queue=none
220	read_from_config=""
221	restart_run=false
222	if [[ `hostname` = rte10 ]]
223	then
224	return_addres=133.5.185.60
225	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
226	elif [[ `hostname` = climate0 ]]
227	then
228	return_addres=165.132.26.68
229	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
230	elif [[ `hostname` = urban00 ]]
231	then
232	return_addres=147.46.30.151
233	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
234	else
235	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
236	fi
237	return_password=""
238	return_username=$LOGNAME
239	remotecall=false
240	remote_username=""
241	run_coupled_model=false
242	run_mode=""
243	scirocco=false
244	store_on_archive_system=false
245	striche=" ----------------------------------------------------------------------------"
246	silent=false
247	source_list=""
248	source_path=SOURCE
249	tasks_per_node=""
250	threads_per_task=1
251	tmpcreate=false
252	tmp_data_catalog=""
253	transfer_problems=false
254	usern=$LOGNAME
255	use_openmp=false
256	version="MRUN 2.0 Rev$Rev: 1279 $"
257	working_directory=`pwd`
258	TOPT=""
259	XOPT=""
260	zeit=$( date \| cut -c 12-19 )
261
262	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
263	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
264	# effect may cause data loss when getopts is reading the
265	# script-option arguments
266	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes remaining_pes sekunden tp1
267
268
269
270
271	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
272	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
273
274	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
275	# EXPORTIERT WERDEN
276	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
277	export group_number input_list numprocs output_list queue run_mode
278
279
280
281	# FEHLERBEHANDLUNG
282	# BEI EXIT:
283	trap 'rm -rf $working_directory/tmp_mrun
284	if [[ $locat != localhost ]]
285	then
286	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
287	# then
288	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
289	#MRUN-calls on $localhost
290	#
291	#date and time user localhost remotehost termination mrun-command
292	#--------------------------------------------------------------------------------------------------------------------
293	#%STATEND%
294	# chmod 666 ${mrun_path}/statistik/mrun_statistik
295	# fi
296	#
297	# # EINTRAG IN DIE STATISTIK-DATEI
298	# string1=`date` #-L35
299	# string2=$usern #-L12
300	# string3=$localhost_realname #-L12
301	# string4=$host #-L12
302	# string5=$locat #-L12
303	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
304	# then
305	# if [[ $do_batch = true ]]
306	# then
307	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
308	# else
309	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
310	# fi
311	# fi
312	echo " " > /dev/null
313	fi
314
315	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
316	then
317
318	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
319	(( i = 0 ))
320	while (( i < iec ))
321	do
322	(( i = i + 1 ))
323	printf "\n *** Execution of ERROR-command:\n"
324	printf " >>> ${err_command[$i]}\n"
325	eval ${err_command[$i]}
326	done
327	if [[ -n $interpreted_config_file ]]
328	then
329	rm -rf $interpreted_config_file
330	fi
331	if [[ -n .mrun_environment ]]
332	then
333	rm -rf .mrun_environment
334	fi
335	if [[ $tmpcreate = true ]]
336	then
337	printf "\n *** Contents of \"$TEMPDIR\":\n"
338	ls -al; cd
339	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
340	fi
341	if [[ "$dvrserver_id" != "" ]]
342	then
343	echo "+++ killing dvrserver_id=$dvrserver_id"
344	kill $dvrserver_id
345	fi
346	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
347	then
348	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
349	fi
350	printf "\n\n+++ MRUN killed \n\n"
351	elif [[ $locat != control_c ]]
352	then
353	printf "\n\n --> all actions finished\n\n"
354	printf " Bye, bye $usern !!\n\n"
355	fi' exit
356
357
358	# BEI TERMINAL-BREAK:
359	trap 'rm -rf $working_directory/tmp_mrun
360	rm -rf $working_directory/tmp_check_namelist_files
361	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
362	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
363	then
364	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
365	fi
366	if [[ "$dvrserver_id" != "" ]]
367	then
368	echo "+++ killing dvrserver_id=$dvrserver_id"
369	kill $dvrserver_id
370	fi
371	printf "\n+++ MRUN killed by \"^C\" \n\n"
372	locat=control_c
373	exit
374	' 2
375
376
377	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
378	# BEEN SET
379	if [[ "$PALM_BIN" = "" ]]
380	then
381	printf "\n +++ environment variable PALM_BIN has not been set"
382	printf "\n please set it to the directory where the PALM scripts are located"
383	locat=palm_bin; exit
384	fi
385	export PATH=$PALM_BIN:$PATH
386
387
388
389	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
390	# FUER FOLGEJOBS BENOETIGT WIRD
391	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
392	do
393	case $option in
394	(a) afname=$OPTARG;;
395	(A) store_on_archive_system=true; mc="$mc -A";;
396	(b) do_batch=true; mc="$mc -b";;
397	(B) delete_temporary_catalog=false; mc="$mc -B";;
398	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
399	(C) restart_run=true; mc="$mc -C";;
400	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
401	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
402	(F) job_on_file="-D"; mc="$mc -F";;
403	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
404	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
405	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
406	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
407	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
408	(I) ignore_archive_error=true; mc="$mc -I";;
409	(k) keep_data_from_previous_run=true; mc="$mc -k";;
410	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
411	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
412	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
413	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
414	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
415	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
416	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
417	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
418	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
419	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
420	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
421	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
422	(S) read_from_config=false; mc="$mc -S";;
423	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
424	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
425	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
426	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
427	(v) silent=true; mc="$mc -v";;
428	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
429	(x) do_trace=true;set -x; mc="$mc -x";;
430	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
431	(y) ocean_file_appendix=true; mc="$mc -y";;
432	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
433	(z) check_namelist_files=false; mc="$mc -z";;
434	(Z) combine_plot_fields=false; mc="$mc -Z";;
435	(\?) printf "\n +++ unknown option $OPTARG \n"
436	printf "\n --> type \"$0 ?\" for available options \n"
437	locat=parameter;exit;;
438	esac
439	done
440
441
442	# EVTL. POSITIONSPARAMETER EINLESEN
443	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
444	(( to_shift = $OPTIND - 1 ))
445	shift $to_shift
446
447	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
448	if [[ "$1" = "?" ]]
449	then
450	(printf "\n *** mrun can be called as follows:\n"
451	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
452	printf "\n Description of available options:\n"
453	printf "\n Option Description Default-Value"
454	printf "\n -a base name of input files equiv. -d"
455	printf "\n -A archiving when using file-attribute fl"
456	printf "\n -b batch-job on local machine ---"
457	printf "\n -B do not delete temporary directory at end ---"
458	printf "\n -c configuration file .mrun.config"
459	printf "\n -d base name of files attached to program test"
460	printf "\n -D preprocessor(cpp)-directives \"\" "
461	printf "\n -F create remote job file only ---"
462	printf "\n -h execution host $localhost_realname"
463	printf "\n -i INPUT control list \"\" "
464	printf "\n -I archiving errors of previous batch-jobs"
465	printf "\n will be ignored"
466	printf "\n -k keep data from previous run"
467	printf "\n -K additional conditions for controling"
468	printf "\n usage of conditional code and"
469	printf "\n env-variables in configuration file \"\" "
470	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
471	printf "\n -M Makefile name Makefile"
472	printf "\n -n node usage (shared/not_shared) depending on -h"
473	printf "\n -o OUTPUT control list \"\" "
474	printf "\n -O use OpenMP ---"
475	printf "\n -p software package list \"\" "
476	printf "\n -q queue \"$queue\" "
477	printf "\n -r run control list (combines -i -o) \"\" "
478	printf "\n -s filenames of routines to be compiled \"\" "
479	printf "\n must end with .f, .f90, .F, or .c !"
480	printf "\n use \"..\" for more than one file and wildcards"
481	printf "\n -s LM compiles all locally modified files"
482	printf "\n -S config file interpreted by shellscript ---"
483	printf "\n -t allowed cpu-time in seconds (batch) 0"
484	printf "\n -T tasks per node depending on -h"
485	printf "\n -u username on remote machine \"\" "
486	printf "\n -v no prompt for confirmation ---"
487	printf "\n -w maximum parallel io streams as given by -X"
488	printf "\n -x tracing of mrun for debug purposes ---"
489	printf "\n -X # of processors (on parallel machines) 1"
490	printf "\n -y add appendix \"_O\" to all local output"
491	printf "\n files (ocean precursor runs followed by"
492	printf "\n coupled atmosphere-ocean runs) ---"
493	printf "\n -Y run coupled model, \"#1 #2\" with"
494	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
495	printf "\n -z disable a priori parameter file check ---"
496	printf "\n -Z skip combine_plot_fields at the end of "
497	printf "\n the simulation ---"
498	printf "\n "
499	printf "\n Possible values of positional parameter <modus>:"
500	printf "\n \"?\" - this outline \n\n") \| more
501	exit
502	elif [[ "$1" != "" ]]
503	then
504	printf "\n +++ positional parameter $1 unknown \n"
505	locat=parameter; exit
506	fi
507
508
509
510	# KURZE STARTMELDUNG
511	printf "\n*** $version "
512	printf "\n will be executed. Please wait ..."
513
514
515
516	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
517	if [[ ! -f $config_file ]]
518	then
519	printf "\n\n +++ configuration file: "
520	printf "\n $config_file"
521	printf "\n does not exist"
522	locat=connect; exit
523	fi
524
525
526	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
527	line=""
528	grep "%host_identifier" $config_file > tmp_mrun
529	while read line
530	do
531	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
532	then
533	HOSTNAME=`echo $line \| cut -d" " -s -f2`
534	host_identifier=`echo $line \| cut -d" " -s -f3`
535	if [[ $localhost_realname = $HOSTNAME ]]
536	then
537	localhost=$host_identifier
538	break
539	fi
540	fi
541	done < tmp_mrun
542
543	if [[ "$localhost" = "" ]]
544	then
545	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
546	printf "\n for local host \"$localhost_realname\"."
547	printf "\n Please add line"
548	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
549	printf "\n to the configuration file."
550	locat=localhost; exit
551	fi
552
553
554	# HOSTSPEZIFISCHE VARIABLEN SETZEN
555	case $localhost_realname in
556	(r1\|r2\|h01\|b01) archive_system=tivoli;;
557	(cs*) archive_system=ut;;
558	(fimm.bccs.uib.no) fimm=true;;
559	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
560	(scirocco) scirocco=true;;
561	esac
562
563
564
565	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
566	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
567	[[ "$afname" = "" ]] && afname=$fname
568
569
570	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
571	if [[ "$run_mode" != "" ]]
572	then
573	input_list="$input_list $run_mode"
574	output_list="$output_list $run_mode"
575	fi
576
577
578	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
579	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
580	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
581	# STARTET)
582	if [[ "$fromhost" = "" ]]
583	then
584	fromhost=$localhost
585	fi
586
587
588	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
589	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
590	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
591	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
592	if [[ -n $host && "$host" != $localhost ]]
593	then
594	do_batch=true
595	do_remote=true
596	case $host in
597	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
598	(*) printf "\n"
599	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
600	printf "\n is not available"
601	locat=nqs; (( iec = 0 )); exit;;
602	esac
603	else
604	host=$localhost
605	fi
606
607
608	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
609	if [[ -n $additional_conditions ]]
610	then
611	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
612	cond1=`echo $additional_conditions \| cut -d" " -f1`
613	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
614	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
615	if [[ -n $dummy ]]
616	then
617	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
618	locat=options; exit
619	fi
620	block=_$cond1
621	[[ -n $cond2 ]] && block=${block}_$cond2
622	fi
623
624
625	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
626	if [[ $run_coupled_model = true ]]
627	then
628
629	if [[ -n $coupled_dist ]]
630	then
631
632	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
633	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
634
635	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
636	then
637
638	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
639	printf "\n PEs (total) : $numprocs"
640	printf "\n PEs (atmosphere): $numprocs_atmos"
641	printf "\n PEs (ocean) : $numprocs_ocean"
642	locat=coupling; exit
643
644	fi
645
646	else
647
648	(( numprocs_ocean = $numprocs / 2 ))
649	(( numprocs_atmos = $numprocs / 2 ))
650
651	fi
652	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
653
654	# GET coupled_mode FROM THE CONFIG FILE
655	line=""
656	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
657	while read line
658	do
659	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
660	then
661	coupled_mode="mpi2"
662	fi
663	done < tmp_mrun
664
665	fi
666
667
668	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
669	# ARCHIVIERUNG FEHLGESCHLAGEN IST
670	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
671	then
672	if [[ $ignore_archive_error = false ]]
673	then
674	printf "\n +++ data archiving of previous run failed"
675	printf "\n see directory \~/job_queue on remote machine"
676	locat=archive; exit
677	else
678	printf "\n +++ warning: data archiving in a previous run failed"
679	printf "\n MRUN continues, trying to get backup copy"
680	fi
681	fi
682
683
684	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
685	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
686	mrun_memory=$memory
687	mrun_group_number=$group_number
688	mrun_cpumax=$cpumax
689	mrun_numprocs=$numprocs
690
691
692	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
693	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
694	if [[ "$read_from_config" = false ]]
695	then
696
697	[[ $silent = false ]] && printf "\n Reading the configuration file... "
698	while read zeile
699	do
700	[[ $silent = false ]] && printf "."
701
702
703	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
704	# ERSETZEN
705	eval zeile=\"$zeile\"
706
707
708	# INTERPRETATION DER ZEILE
709	if [[ "$(echo $zeile)" = "" ]]
710	then
711	# LEERZEILE, KEINE AKTION
712	continue
713
714	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
715	then
716
717	# ZEILE IST KOMMENTARZEILE
718	true
719
720	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
721	then
722
723	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
724	zeile=$(echo $zeile \| cut -c2-)
725	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
726	var=`echo $zeile \| cut -d" " -f1`
727	value=`echo $zeile \| cut -d" " -s -f2`
728	for_host=`echo $zeile \| cut -d" " -s -f3`
729	for_cond1=`echo $zeile \| cut -d" " -s -f4`
730	for_cond2=`echo $zeile \| cut -d" " -s -f5`
731
732	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
733	then
734
735	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
736	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
737	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
738
739
740	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
741	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
742	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
743	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
744	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
745	# KONFIGURATIONSDATEI
746	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
747	then
748	eval $var=\$value
749
750	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
751	if [[ $do_trace = true ]]
752	then
753	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
754	fi
755	fi
756
757	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
758	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
759	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
760	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
761	if [[ $var = host ]]
762	then
763	if [[ -n $host && "$host" != $localhost ]]
764	then
765	do_batch=true
766	do_remote=true
767	case $host in
768	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
769	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
770	printf "\n is not available"
771	locat=nqs; exit;;
772	esac
773	else
774	host=$localhost
775	fi
776	fi
777
778	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
779	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
780	# DEN PROGRAMMEN BENOETIGT WERDEN
781	export $var
782	fi
783
784
785
786
787	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
788	then
789
790	# ZEILE DEFINIERT ERROR-KOMMANDO
791	(( iec = iec + 1 ))
792	zeile=$(echo $zeile \| cut -c4-)
793	err_command[$iec]="$zeile"
794
795	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
796	then
797
798	# ZEILE DEFINIERT INPUT-KOMMANDO
799	(( iic = iic + 1 ))
800	zeile=$(echo $zeile \| cut -c4-)
801	in_command[$iic]="$zeile"
802
803	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
804	then
805
806	# ZEILE DEFINIERT OUTPUT-KOMMANDO
807	(( ioc = ioc + 1 ))
808	zeile=$(echo $zeile \| cut -c4-)
809	out_command[$ioc]="$zeile"
810
811	else
812
813	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
814	# s2a: in/out - Feld
815	# s2b: loc - Feld (optional)
816	# s2c: tr/ar - Feld (optional)
817	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
818	s1=`echo $zeile \| cut -d" " -f1`
819	s2=`echo $zeile \| cut -d" " -s -f2`
820	s2a=$(echo $s2 \| cut -d":" -f1)
821	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
822	then
823	s2b=""
824	s2c=""
825	else
826	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
827	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
828	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
829	fi
830	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
831	s3=`echo $zeile \| cut -d" " -f3`
832	s4=`echo $zeile \| cut -d" " -s -f4`
833	s5=`echo $zeile \| cut -d" " -s -f5`
834	s6=`echo $zeile \| cut -d" " -s -f6`
835
836
837	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
838	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
839	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
840	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
841	# HANDEN SEIN MUSS (D.H. s2b = loc)
842	IFSALT="$IFS"; IFS="$IFS:"
843	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
844	then
845	found=false
846	for actual in $input_list
847	do
848	for formal in $s3
849	do
850	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
851	done
852	done
853	if [[ $found = true ]]
854	then
855	(( iin = iin + 1 ))
856	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
857	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
858	extin[$iin]=$s6
859	fi
860	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
861	then
862	found=false
863	for actual in $output_list
864	do
865	for formal in $s3
866	do
867	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
868	done
869	done
870	if [[ $found = true ]]
871	then
872	(( iout = iout + 1 ))
873	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
874	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
875	fi
876	elif [[ "$s2a" != in && "$s2a" != out ]]
877	then
878	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
879	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
880	locat=connect; exit
881	fi
882	IFS="$IFSALT"
883	fi
884	done < $config_file
885
886	else
887
888
889	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
890	[[ $silent = false ]] && printf "..."
891	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
892	export interpreted_config_file=.icf.$RANDOM
893
894
895
896	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
897	# VERFUEGUNG STELLEN
898	cat > .mrun_environment << %%END%%
899	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
900	config_file = '$config_file', do_remote = '$do_remote',
901	do_trace = '$do_trace', host = '$host',
902	input_list = '$input_list', icf = '$interpreted_config_file',
903	localhost = '$localhost', output_list = '$output_list' /
904
905	%%END%%
906
907	if [[ $localhost_realname = "sx-fep" ]]
908	then
909	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
910	else
911
912	if [[ "$host" != $localhost ]]
913	then
914
915	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
916	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
917	if [[ $? != 0 ]]
918	then
919	printf "\n\n +++ no interpret_config found"
920	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
921	locat=interpret_config; exit
922	fi
923	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
924	$interpret_config_executable
925
926	else
927
928	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
929	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
930	then
931	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
932	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
933	locat=interpret_config; exit
934	else
935	interpret_config${block}.x
936	fi
937
938	fi
939	fi
940	rm .mrun_environment
941
942
943	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
944	chmod u+x $interpreted_config_file
945	export PATH=$PATH:.
946	. $interpreted_config_file
947	rm $interpreted_config_file
948
949	fi
950
951
952	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
953	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
954	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
955	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
956	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
957	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
958	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
959
960
961	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
962	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
963	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
964	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
965	if [[ "$SOURCES_COMPLETE" = "" ]]
966	then
967
968	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
969	# VEREINBART WURDE
970	source_path=""
971	line=""
972	grep "%source_path" $config_file > tmp_mrun
973	while read line
974	do
975	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
976	then
977	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
978	then
979	global_source_path=`echo $line \| cut -d" " -f2`
980	fi
981	fi
982	done < tmp_mrun
983
984	line=""
985	found=false
986	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
987	while read line
988	do
989	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
990	then
991	if [[ $found = true ]]
992	then
993	printf "\n\n +++ more than one source path found in configuration file"
994	printf "\n for local host \"$localhost\" "
995	locat=source_path; exit
996	fi
997	source_path=`echo $line \| cut -d" " -f2`
998	found=true
999	fi
1000	done < tmp_mrun
1001	rm tmp_mrun
1002
1003	if [[ "$source_path" = "" ]]
1004	then
1005	if [[ "$global_source_path" != "" ]]
1006	then
1007	source_path=$global_source_path
1008	else
1009	printf "\n\n +++ no source path found in configuration file"
1010	printf "\n for local host \"$localhost\" "
1011	locat=source_path; exit
1012	fi
1013	fi
1014	eval source_path=$source_path
1015
1016	if [[ ! -d $source_path ]]
1017	then
1018	printf "\n\n +++ source path \"$source_path\" on local host"
1019	printf "\n \"$localhost\" does not exist"
1020	locat=source_path; exit
1021	fi
1022
1023	fi
1024
1025
1026	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1027	# DURCH OPTION -G MITGETEILT)
1028	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1029	then
1030	global_revision=`svnversion $source_path 2>/dev/null`
1031	global_revision="Rev: $global_revision"
1032	fi
1033
1034
1035	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1036	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1037	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1038	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1039	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1040	if [[ -n $host && "$host" != $localhost ]]
1041	then
1042	do_batch=true
1043	do_remote=true
1044	case $host in
1045	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayh\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1046	(*) printf "\n"
1047	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1048	printf "\n is not available"
1049	locat=nqs; (( iec = 0 )); exit;;
1050	esac
1051	else
1052	host=$localhost
1053	fi
1054
1055
1056	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1057	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1058	then
1059
1060	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1061	if [[ ! -n $numprocs ]]
1062	then
1063	printf "\n"
1064	printf "\n +++ option \"-K parallel\" requires additional specification"
1065	printf "\n of the number of processors to be used by"
1066	printf "\n mrun-option \"-X\" or by environment-variable"
1067	printf "\n \"numprocs\" in the configuration file"
1068	locat=numprocs; (( iec = 0 )); exit
1069	fi
1070
1071	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1072	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1073	# GESAMTPROZESSORANZAHL IST
1074	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1075	then
1076	printf "\n"
1077	printf "\n +++ option \"-T\" (tasks per node) is missing"
1078	printf "\n set -T option or define tasks_per_node in the config file"
1079	locat=tasks_per_node; (( iec = 0 )); exit
1080	fi
1081
1082	if (( numprocs < tasks_per_node ))
1083	then
1084	printf "\n"
1085	printf "\n +++ tasks per node (-T) cannot exceed total number of processors (-X)"
1086	printf "\n given values: -T $tasks_per_node -X $numprocs"
1087	locat=tasks_per_node; (( iec = 0 )); exit
1088	fi
1089
1090	if [[ $host != lcflow && $host != lcxt5m ]]
1091	then
1092	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1093	(( ival = $tasks_per_node ))
1094	(( pes = numprocs ))
1095	(( ii = pes / ival ))
1096	(( remaining_pes = pes - ii * ival ))
1097	if (( remaining_pes > 0 ))
1098	then
1099	printf "\n"
1100	printf "\n +++ WARNING: tasks per node (option \"-T\") is not an integral"
1101	printf "\n divisor of the total number of processors (option \"-X\")"
1102	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1103	printf "\n One of the nodes is filled with $remaining_pes instead of $tasks_per_node tasks"
1104	(( nodes = nodes + 1 ))
1105	fi
1106	fi
1107
1108
1109	# IBMY HAT NUR EINEN KNOTEN
1110	if [[ $host = ibmy ]]
1111	then
1112	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1113	then
1114	printf "\n"
1115	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1116	printf "\n total number of processors (option \"-X\")"
1117	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1118	locat=tasks_per_node; (( iec = 0 )); exit
1119	fi
1120	fi
1121
1122
1123	# SETTINGS FOR SUBJOB-COMMAND
1124	OOPT="-O $threads_per_task"
1125
1126	# GESAMTZAHL DER KNOTEN BESTIMMEN
1127	if [[ "$tasks_per_node" != "" ]]
1128	then
1129	TOPT="-T $tasks_per_node"
1130	fi
1131
1132	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1133	# SETZEN
1134	if [[ $node_usage = default ]]
1135	then
1136	if [[ $host = ibms ]]
1137	then
1138	node_usage=shared
1139	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1140	then
1141	node_usage=singlejob
1142	else
1143	node_usage=not_shared
1144	fi
1145	fi
1146
1147	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1148	then
1149	printf "\n"
1150	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1151	printf "\n \"shared\" or \"not_shared\""
1152	locat=tasks_per_node; (( iec = 0 )); exit
1153	fi
1154
1155	fi
1156
1157	# PRUEFEN, OB HOSTFILE EXISTIERT
1158	if [[ -n $hostfile ]]
1159	then
1160	if [[ ! -f $hostfile ]]
1161	then
1162	printf "\n"
1163	printf "\n +++ hostfile \"$hostfile\" does not exist"
1164	locat=hostfile; exit
1165	fi
1166	fi
1167
1168	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1169	if [[ $host = ibmy && $do_remote = false ]]
1170	then
1171	if [[ ! -f $HOME/.rhosts ]]
1172	then
1173	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1174	printf "\n\n *** file:"
1175	printf "\n $HOME/.rhosts"
1176	printf "\n was created\n"
1177	fi
1178	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1179	then
1180	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1181	printf "\n\n *** file:"
1182	printf "\n $HOME/.rhosts"
1183	printf "\n was extended by the name of the current host\n"
1184	fi
1185	fi
1186
1187
1188	# Set default value for the maximum number of parallel io streams
1189	if [[ "$maximum_parallel_io_streams" = "" ]]
1190	then
1191	maximum_parallel_io_streams=$numprocs
1192	fi
1193
1194
1195	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1196	if [[ "$scp_port" != "" ]]
1197	then
1198	PORTOPT="-P $scp_port"
1199	SSH_PORTOPT="-p $scp_port"
1200	fi
1201
1202
1203	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1204	if [[ $queue = none ]]
1205	then
1206	case $host in
1207	(ibmh) queue=cluster;;
1208	(ibmkisti) queue=class.32plus;;
1209	(ibmy) queue=parallel;;
1210	(lckiaps) queue=normal;;
1211	(lckyoto) queue=ph;;
1212	(lckyuh) queue=fx-single;;
1213	(lckyut) queue=cx-single;;
1214	(lcsgib) queue=testq;;
1215	(lcsgih) queue=testq;;
1216	(lctit) queue=S;;
1217	(nech) queue=none;;
1218	(necriam) queue=SP;;
1219	(unics) queue=unics;;
1220	esac
1221	fi
1222
1223
1224	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1225	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1226	# ERMITTELN
1227	(( i = 0 ))
1228	while (( i < iin ))
1229	do
1230	(( i = i + 1 ))
1231	(( maxcycle = 0 ))
1232
1233	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1234	if [[ "${actionin[$i]}" = di ]]
1235	then
1236	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1237	# REM-MASCHINE AUSWERTEN
1238	eval filename=${pathin[$i]}/${endin[$i]}
1239	else
1240	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1241	# REM-MASCHINE AUSWERTEN
1242	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1243	fi
1244	eval pathname=${pathin[$i]}
1245
1246	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1247	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1248	then
1249	filename_input=$filename
1250	fi
1251
1252	# PRUEFEN AUF VORHANDENSEIN
1253	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1254	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1255	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1256	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1257	then
1258	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1259	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1260	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1261	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1262	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1263	if [[ "${transin[$i]}" != "locopt" ]]
1264	then
1265	printf "\n\n +++ INPUT-file: "
1266	if [[ "${extin[$i]}" = "" ]]
1267	then
1268	printf "\n $filename"
1269	else
1270	printf "\n $filename.${extin[$i]}"
1271	fi
1272	printf "\n does not exist\n"
1273	locat=input; exit
1274	else
1275	transin[$i]="unavailable"
1276	fi
1277	else
1278
1279	# ZYKLUSNUMMER FESTSTELLEN
1280	ls -1 -d $filename > filelist 2>/dev/null
1281	ls -1 -d $filename.* >> filelist 2>/dev/null
1282	while read zeile
1283	do
1284	cycle=$(echo $zeile \| cut -f2 -d".")
1285	if [[ "$cycle" = "$zeile" ]]
1286	then
1287	(( icycle = 0 ))
1288	elif [[ "$cycle" = "${extin[$i]}" ]]
1289	then
1290	(( icycle = 0 ))
1291	else
1292	(( icycle = $cycle ))
1293	fi
1294	if (( icycle > maxcycle ))
1295	then
1296	(( maxcycle = icycle ))
1297	file_to_be_used=$zeile
1298	fi
1299	done <filelist
1300	rm filelist
1301
1302	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1303	if (( maxcycle > 0 ))
1304	then
1305	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1306	then
1307	filename=${filename}.$maxcycle.${extin[$i]}
1308	else
1309	filename=${filename}.$maxcycle
1310	fi
1311	else
1312	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1313	then
1314	filename=${filename}.${extin[$i]}
1315	fi
1316	fi
1317
1318	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1319	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1320	absnamein[$i]=$filename
1321	if (( maxcycle > 0 ))
1322	then
1323	if [[ "${actionin[$i]}" = di ]]
1324	then
1325	frelin[$i]=${endin[$i]}.$maxcycle
1326	else
1327	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1328	fi
1329	else
1330	if [[ "${actionin[$i]}" = di ]]
1331	then
1332	frelin[$i]=${endin[$i]}
1333	else
1334	frelin[$i]=${afname}${endin[$i]}
1335	fi
1336	fi
1337
1338	fi
1339	done
1340
1341	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1342	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1343	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1344	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1345	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1346	(( i = 0 ))
1347	while (( i < iout ))
1348	do
1349	(( i = i + 1 ))
1350	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1351	then
1352	if [[ "${actionout[$i]}" = tr ]]
1353	then
1354	actionout[$i]=""
1355	elif [[ "${actionout[$i]}" = trpe ]]
1356	then
1357	actionout[$i]=pe
1358	elif [[ "${actionout[$i]}" = tra ]]
1359	then
1360	actionout[$i]=a
1361	fi
1362	(( maxcycle = 0 ))
1363	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1364	eval catalogname=${pathout[$i]}
1365	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1366	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1367	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1368	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1369	then
1370
1371	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1372	if cat /dev/null > $filename
1373	then
1374	rm $filename
1375	else
1376
1377	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1378	if [[ ! -d $catalogname ]]
1379	then
1380	if mkdir -p $catalogname
1381	then
1382	printf "\n\n *** directory:"
1383	printf "\n $catalogname"
1384	printf "\n was created\n"
1385	else
1386	printf "\n\n +++ OUTPUT-file:"
1387	printf "\n $filename"
1388	printf "\n cannot be created, because directory does not exist"
1389	printf "\n and cannot be created either"
1390	printf "\n"
1391	locat=output ; exit
1392	fi 2>/dev/null
1393	else
1394	printf "\n\n +++ OUTPUT-file:"
1395	printf "\n $filename"
1396	printf "\n cannot be created, although directory exists"
1397	printf "\n"
1398	locat=output ; exit
1399	fi
1400	fi 2>/dev/null
1401	else
1402
1403	# ZYKLUSNUMMER FESTSTELLEN
1404	ls -1 -d $filename > filelist 2>/dev/null
1405	ls -1 -d $filename.* >> filelist 2>/dev/null
1406	while read zeile
1407	do
1408	cycle=$(echo $zeile \| cut -f2 -d".")
1409	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1410	then
1411	(( icycle = 1 ))
1412	else
1413	(( icycle = $cycle + 1 ))
1414	fi
1415	if (( icycle > maxcycle ))
1416	then
1417	(( maxcycle = icycle ))
1418	fi
1419	done <filelist
1420	rm filelist
1421	fi
1422
1423	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1424	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1425	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1426	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1427	if [[ "${actionout[$i]}" != a ]]
1428	then
1429	if (( maxcycle > 0 ))
1430	then
1431	filename=${filename}.$maxcycle
1432	if cat /dev/null > $filename
1433	then
1434	rm $filename
1435	else
1436	printf "\n +++ OUTPUT-file:"
1437	printf "\n $filename"
1438	printf "\n cannot be created"
1439	locat=output ; exit
1440	fi
1441	fi
1442	else
1443	(( maxcycle = maxcycle - 1 ))
1444	if (( maxcycle > 0 ))
1445	then
1446	filename=${filename}.$maxcycle
1447	fi
1448	fi
1449
1450	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1451	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1452	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1453	pathout[$i]=$filename
1454	if (( maxcycle > 0 ))
1455	then
1456	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1457	else
1458	frelout[$i]=${fname}${endout[$i]}
1459	fi
1460
1461	fi
1462	done
1463
1464
1465	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1466	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1467	then
1468	if [[ "$dvr_inc" = "" ]]
1469	then
1470	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1471	printf "\n This is required for the dvrp_graphics package.\n"
1472	locat=dvr; exit
1473	fi
1474	if [[ "$dvr_lib" = "" ]]
1475	then
1476	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1477	printf "\n This is required for the dvrp_graphics package.\n"
1478	locat=dvr; exit
1479	fi
1480	fi
1481
1482
1483	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1484	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1485	# UEBERSETZT ZU WERDEN)
1486	if [[ "$mainprog" = "" && "$executable" = "" ]]
1487	then
1488	printf "\n +++ neither main program nor executable defined"
1489	locat=source; exit
1490	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1491	then
1492	printf "\n +++ main program as well as executable defined"
1493	locat=source; exit
1494	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1495	then
1496	do_compile=false
1497	fi
1498
1499
1500	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1501	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1502	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1503	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1504	then
1505	rm -rf SOURCES_FOR_RUN_$fname
1506	mkdir SOURCES_FOR_RUN_$fname
1507	fi
1508
1509
1510	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1511	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1512	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1513	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1514	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1515	then
1516
1517	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1518
1519	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1520	then
1521
1522	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1523	source_list=""
1524	cd $source_path
1525
1526
1527	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1528	if [[ ! -d .svn ]]
1529	then
1530	printf "\n\n +++ source directory"
1531	printf "\n \"$source_path\" "
1532	printf "\n is not under control of \"subversion\"."
1533	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1534	fi
1535
1536
1537	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1538	Filenames=""
1539	svn status > tmp_mrun
1540	while read line
1541	do
1542	firstc=`echo $line \| cut -c1`
1543	if [[ $firstc = M \|\| $firstc = "?" ]]
1544	then
1545	Name=`echo "$line" \| cut -c8-`
1546	extension=`echo $Name \| cut -d. -f2`
1547	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1548	then
1549	Filenames="$Filenames "$Name
1550	fi
1551	fi
1552	done < tmp_mrun
1553
1554
1555	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1556	for dateiname in $Filenames
1557	do
1558	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1559	source_list=$source_list"$dateiname "
1560	done
1561
1562	cd - > /dev/null
1563
1564
1565	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1566	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1567	# VORHANDEN
1568	elif [[ "$source_list" != "" && $restart_run != true ]]
1569	then
1570
1571	cd $source_path
1572
1573	for filename in $source_list
1574	do
1575
1576	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1577	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1578	then
1579	printf "\n +++ source code file: $filename"
1580	printf "\n must not contain (\"/\") "
1581	locat=source; exit
1582	fi
1583
1584	if [[ ! -f $filename ]]
1585	then
1586	printf "\n +++ source code file: $filename"
1587	printf "\n does not exist"
1588	locat=source; exit
1589	else
1590	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1591	fi
1592
1593	done
1594
1595	cd - > /dev/null
1596
1597	fi
1598
1599
1600	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1601	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1602	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1603	if [[ $restart_run != true ]]
1604	then
1605
1606	if [[ ! -f "$source_path/$mainprog" ]]
1607	then
1608	printf "\n\n +++ main program: $mainprog"
1609	printf "\n does not exist in source directory"
1610	printf "\n \"$source_path\"\n"
1611	locat=source; exit
1612	else
1613	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1614	then
1615	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1616	source_list=${mainprog}" $source_list"
1617	fi
1618	fi
1619	fi
1620
1621
1622	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1623	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1624	if [[ "$restart_run" != true ]]
1625	then
1626	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1627	if [[ ! -f $makefile ]]
1628	then
1629	printf "\n +++ file \"$makefile\" does not exist"
1630	locat=make; exit
1631	else
1632	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1633	fi
1634	fi
1635
1636
1637	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1638	if [[ $restart_run != true && "$add_source_path" != "" ]]
1639	then
1640
1641	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1642	if [[ ! -d $add_source_path ]]
1643	then
1644	printf "\n\n +++ WARNING: additional source code directory"
1645	printf "\n \"$add_source_path\" "
1646	printf "\n does not exist or is not a directory."
1647	printf "\n No source code will be used from this directory!\n"
1648	add_source_path=""
1649	if [[ $silent == false ]]
1650	then
1651	sleep 3
1652	fi
1653	else
1654
1655	cd $add_source_path
1656	found=false
1657
1658	Names=$(ls -1 *.f90 2>&1)
1659	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1660	Names=$(ls -1 *.F90 2>&1)
1661	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1662	Names=$(ls -1 *.F 2>&1)
1663	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1664	Names=$(ls -1 *.f 2>&1)
1665	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1666	Names=$(ls -1 *.c 2>&1)
1667	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1668
1669	cd - > /dev/null
1670	cd SOURCES_FOR_RUN_$fname
1671
1672	# COPY MAKEFILE IF EXISTING
1673	if [[ -f $add_source_path/Makefile ]]
1674	then
1675	printf "\n\n *** user Makefile from directory"
1676	printf "\n \"$add_source_path\" is used \n"
1677	if [[ $silent == false ]]
1678	then
1679	sleep 1
1680	fi
1681	cp $add_source_path/Makefile .
1682	fi
1683
1684	for dateiname in $AddFilenames
1685	do
1686	if [[ -f $dateiname ]]
1687	then
1688	printf "\n +++ source code file \"$dateiname\" found in additional"
1689	printf "\n source code directory \"$add_source_path\" "
1690	printf "\n but was also given with option \"-s\" which means that it should be taken"
1691	printf "\n from directory \"$source_path\"."
1692	locat=source; exit
1693	fi
1694
1695	cp $add_source_path/$dateiname .
1696	source_list="$source_list $dateiname"
1697
1698	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1699	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1700	then
1701	printf "\n\n +++ user file \"$dateiname\" "
1702	printf "\n is not listed in Makefile \n"
1703	locat=source; exit
1704	else
1705
1706	# Default User-Interface von der Liste entfernen, falls Datei
1707	# ein User-Interface enthaelt
1708	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1709	# then
1710	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1711	# then
1712	# rm -rf user_interface.f90
1713	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1714	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1715	# printf "\n since a user-interface is found in file"
1716	# printf "\n \"$add_source_path/$dateiname\" \n"
1717	# sleep 3
1718	# else
1719	if [[ $found = false ]]
1720	then
1721	found=true
1722	printf "\n\n *** following user file(s) added to the"
1723	printf " files to be translated:\n "
1724	fi
1725	printf "$dateiname "
1726	if [[ $silent == false ]]
1727	then
1728	sleep 0.5
1729	fi
1730
1731	fi
1732	done
1733	[[ $found = true ]] && printf "\n"
1734	cd - > /dev/null
1735	fi
1736	fi
1737
1738
1739	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1740	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1741	if [[ $restart_run != true && -n $package_list ]]
1742	then
1743
1744	cd $source_path
1745
1746	for package in $package_list
1747	do
1748
1749	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1750
1751	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1752	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1753	# LIEFERT
1754	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1755
1756
1757	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1758	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1759	for source_list_name in $package_source_list
1760	do
1761	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1762	then
1763
1764	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1765	ending=`echo $source_list_name \| cut -f2 -d.`
1766	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1767	then
1768	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1769	source_list="$source_list $source_list_name"
1770	fi
1771	fi
1772	done
1773	done
1774
1775	cd - > /dev/null
1776	fi
1777
1778
1779	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1780	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1781	# if [[ "$restart_run" != true ]]
1782	# then
1783	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1784	# if [[ ! -f $makefile ]]
1785	# then
1786	# printf "\n +++ file \"$makefile\" does not exist"
1787	# locat=make; exit
1788	# else
1789	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1790	# fi
1791	# fi
1792
1793	fi # do_compile=true
1794
1795
1796	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1797	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1798	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1799	then
1800
1801	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1802	# ZUSAMMENSETZEN
1803	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1804	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1805	then
1806	cpp_options="${cpp_options},-D__ibm=__ibm"
1807	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1808	then
1809	cpp_options="$cpp_options -D__nec"
1810	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1811	then
1812	cpp_options="$cpp_options -D__lc"
1813	else
1814	cpp_options="$cpp_options -D__$localhost"
1815	fi
1816
1817	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1818	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1819	then
1820	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1821	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1822	else
1823	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1824	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1825	fi
1826
1827	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1828	if [[ -n $package_list ]]
1829	then
1830	for package in $package_list
1831	do
1832	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1833	then
1834	if [[ $package != "dvrp_graphics+1PE" ]]
1835	then
1836	cpp_options="${cpp_options},-D__$package=__$package"
1837	else
1838	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1839	export use_seperate_pe_for_dvrp_output=true
1840	fi
1841	else
1842	if [[ $package != "dvrp_graphics+1PE" ]]
1843	then
1844	cpp_options="$cpp_options -D__$package"
1845	else
1846	cpp_options="$cpp_options -D__dvrp_graphics"
1847	export use_seperate_pe_for_dvrp_output=true
1848	fi
1849	fi
1850	done
1851	fi
1852
1853	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1854	if [[ -n $cpp_opts ]]
1855	then
1856	for popts in $cpp_opts
1857	do
1858	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1859	then
1860	cpp_options="${cpp_options},-D__$popts=__$popts"
1861	else
1862	cpp_options="$cpp_options -D__$popts"
1863	fi
1864	done
1865	fi
1866
1867	else
1868
1869
1870	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1871	if [[ $do_remote = false ]]
1872	then
1873	if [[ ! -f $executable ]]
1874	then
1875	printf "\n +++ executable file: $executable"
1876	printf "\n does not exist"
1877	locat=executable; exit
1878	fi
1879	fi
1880	fi
1881
1882
1883	# JOBMODUS FESTSTELLEN
1884	if [[ "$ENVIRONMENT" = BATCH ]]
1885	then
1886	jobmo=BATCH
1887	else
1888	jobmo=INTERACTIVE
1889	fi
1890
1891
1892	# no interactive runs on lctit
1893	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1894	then
1895	printf "\n +++ no interactive runs allowed on host \"$host\" "
1896	printf "\n please submit batch job using mrun option \"-b\" \n"
1897	locat=normal; exit
1898	fi
1899
1900
1901	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1902	# DURCH BENUTZER ANDERWEITIG VEREINBART
1903	if [[ "$compiler_name" = "" ]]
1904	then
1905
1906	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1907	locat=compiler_name; exit
1908
1909	fi
1910
1911
1912	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1913	[[ $localhost = necriam ]] && compiler_name=mpif90
1914
1915
1916
1917	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1918	kennung=$RANDOM
1919	if [[ "$tmp_user_catalog" = "" ]]
1920	then
1921	if [[ $localhost = ibmh ]]
1922	then
1923	tmp_user_catalog=$SCRATCH
1924	elif [[ $localhost = nech ]]
1925	then
1926	tmp_user_catalog=$WRKSHR
1927	else
1928	tmp_user_catalog=/tmp
1929	fi
1930	fi
1931	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1932
1933
1934	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1935	# BESTIMMEN
1936	if [[ "$tmp_data_catalog" = "" ]]
1937	then
1938	if [[ $localhost = nech ]]
1939	then
1940	tmp_data_catalog=$WRKSHR/mrun_restart_data
1941	else
1942	tmp_data_catalog=/tmp/mrun_restart_data
1943	fi
1944	fi
1945
1946
1947	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1948	# ERSETZEN
1949	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1950	then
1951	eval fopts=\"$fopts\"
1952	eval lopts=\"$lopts\"
1953	fi
1954
1955
1956
1957	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1958	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1959	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1960	ROPTS="$ropts"
1961	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1962	# then
1963	XOPT="-X $numprocs"
1964	# fi
1965
1966
1967
1968	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1969	# GRAMM BENOETIGT
1970	done=false
1971	while [[ $done = false ]]
1972	do
1973	cputime=$cpumax
1974	if (( $cputime == 0 ))
1975	then
1976	if [[ $do_batch = true ]]
1977	then
1978	printf "\n +++ cpu-time is undefined"
1979	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1980	printf "\n >>> "
1981	read cputime 1>/dev/null 2>&1
1982	else
1983	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1984	fi
1985	else
1986	done=true
1987	fi
1988	cpumax=$cputime
1989	done
1990
1991	(( minuten = cputime / 60 ))
1992	(( sekunden = cputime - minuten * 60 ))
1993
1994
1995	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1996	if [[ $do_batch = true ]]
1997	then
1998	done=false
1999	while [[ $done = false ]]
2000	do
2001	if (( memory == 0 ))
2002	then
2003	printf "\n +++ memory demand is undefined"
2004	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2005	printf "\n >>> "
2006	read memory 1>/dev/null 2>&1
2007	else
2008	done=true
2009	fi
2010	done
2011	fi
2012
2013
2014	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2015	if [[ $do_remote = true && -z $remote_username ]]
2016	then
2017	while [[ -z $remote_username ]]
2018	do
2019	printf "\n +++ username on remote host \"$host\" is undefined"
2020	printf "\n >>> Please type username:"
2021	printf "\n >>> "
2022	read remote_username
2023	done
2024	mc="$mc -u$remote_username"
2025	fi
2026
2027	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2028	if [[ "$login_init_cmd" != "" ]]
2029	then
2030	export init_cmds="${login_init_cmd};"
2031	fi
2032
2033
2034	# set module load command and export for subjob
2035	if [[ "$modules" != "" ]]
2036	then
2037	if [[ $host = lctit ]]
2038	then
2039	export module_calls=". $modules"
2040	else
2041	export module_calls="module load ${modules};"
2042	fi
2043	fi
2044
2045	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2046	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2047	then
2048	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2049	then
2050	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2051	fi
2052	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2053	# then
2054	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2055	# echo "*** module_calls = $module_calls"
2056	# fi
2057	fi
2058
2059
2060	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2061	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2062	then
2063	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2064	then
2065	mpilib=mpt
2066	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2067	then
2068	mpilib=mvapich
2069	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2070	then
2071	mpilib=impi
2072	fi
2073	fi
2074
2075
2076
2077	###########################################################################
2078	# HEADER-AUSGABE
2079	###########################################################################
2080
2081
2082	calltime=$(date)
2083	printf "\n"
2084	# [[ $silent = false ]] && clear
2085	printf "#------------------------------------------------------------------------# \n"
2086	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2087	printf "\| \| \n"
2088	spalte1="called on:"; spalte2=$localhost_realname
2089	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2090	if [[ $local_compile = false ]]
2091	then
2092	if [[ $do_remote = true ]]
2093	then
2094	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2095	else
2096	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2097	fi
2098	else
2099	spalte1="compiling test only!"; spalte2=""
2100	fi
2101	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2102	if [[ -n $numprocs ]]
2103	then
2104	if [[ $run_coupled_model = false ]]
2105	then
2106	spalte1="number of PEs:"; spalte2=$numprocs
2107	else
2108	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2109	fi
2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2111	fi
2112	if [[ -n $tasks_per_node ]]
2113	then
2114	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	if (( remaining_pes > 0 ))
2117	then
2118	spalte1=" "; spalte2="one of the nodes only filled with $remaining_pes tasks"
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	fi
2121	fi
2122	if [[ $maximum_parallel_io_streams != $numprocs ]]
2123	then
2124	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2125	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2126	fi
2127	if [[ $use_openmp = true ]]
2128	then
2129	spalte1="threads per task:"; spalte2="$threads_per_task"
2130	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2131	fi
2132	printf "\| \| \n"
2133	if [[ $do_compile = true ]]
2134	then
2135	if [[ "$mopts" != "" ]]
2136	then
2137	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2138	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2139	zeile=$(echo "$mopts" \| cut -c46-)
2140	while [[ "$zeile" != "" ]]
2141	do
2142	spalte1=""
2143	spalte2=$(echo "$zeile" \| cut -c-45)
2144	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2145	zeile=$(echo "$zeile" \| cut -c46-)
2146	done
2147	fi
2148
2149	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	zeile=$(echo "$cpp_options" \| cut -c46-)
2152	while [[ "$zeile" != "" ]]
2153	do
2154	spalte1=""
2155	spalte2=$(echo "$zeile" \| cut -c-45)
2156	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2157	zeile=$(echo "$zeile" \| cut -c46-)
2158	done
2159
2160	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	zeile=$(echo "$fopts" \| cut -c46-)
2163	while [[ "$zeile" != "" ]]
2164	do
2165	spalte1=""
2166	spalte2=$(echo "$zeile" \| cut -c-45)
2167	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2168	zeile=$(echo "$zeile" \| cut -c46-)
2169	done
2170
2171	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2172	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2173	zeile=$(echo "$lopts" \| cut -c46-)
2174	while [[ "$zeile" != "" ]]
2175	do
2176	spalte1=""
2177	spalte2=$(echo "$zeile" \| cut -c-45)
2178	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2179	zeile=$(echo "$zeile" \| cut -c46-)
2180	done
2181
2182	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2183	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2184	zeile=$(echo "$modules" \| cut -c46-)
2185	while [[ "$zeile" != "" ]]
2186	do
2187	spalte1=""
2188	spalte2=$(echo "$zeile" \| cut -c-45)
2189	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2190	zeile=$(echo "$zeile" \| cut -c46-)
2191	done
2192
2193	spalte1="main program:"; spalte2=$mainprog
2194	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2195	else
2196	spalte1=executable:; spalte2=$executable
2197	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2198	fi
2199	printf "\| \| \n"
2200	spalte1="base name of files:"; spalte2=$fname
2201	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2202	if [[ $fname != $afname ]]
2203	then
2204	spalte1="base name of input files:"; spalte2=$afname
2205	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2206	fi
2207	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2208	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2209	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2210	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2211
2212	if [[ "$ocean_file_appendix" = true ]]
2213	then
2214	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2215	fi
2216
2217	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2218	then
2219	spalte1="memory demand / PE":; spalte2="$memory MB"
2220	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2221	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2222	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2223	fi
2224
2225	if [[ $do_compile = true ]]
2226	then
2227	printf "\| \| \n"
2228	printf "\| Files to be compiled: \| \n"
2229	zeile=$source_list
2230	while [[ "$zeile" != "" ]]
2231	do
2232	linestart=$(echo $zeile \| cut -c-70)
2233	printf "\| %-70s \| \n" "$linestart"
2234	zeile=$(echo "$zeile" \| cut -c71-)
2235	done
2236	fi
2237	printf "#------------------------------------------------------------------------#"
2238
2239
2240
2241	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2242	if [[ $do_trace = true ]]
2243	then
2244	(( i = 0 ))
2245	while (( i < iin ))
2246	do
2247	(( i = i + 1 ))
2248	if (( i == 1 ))
2249	then
2250	printf "\n\n >>> INPUT-file assignments:\n"
2251	fi
2252	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2253	done
2254	(( i = 0 ))
2255	while (( i < iout ))
2256	do
2257	(( i = i + 1 ))
2258	if (( i == 1 ))
2259	then
2260	printf "\n\n >>> OUTPUT-file assignments:\n"
2261	fi
2262	printf "\n ${localout[$i]} : ${pathout[$i]}"
2263	done
2264	(( i = 0 ))
2265	while (( i < iic ))
2266	do
2267	(( i = i + 1 ))
2268	if (( i == 1 ))
2269	then
2270	printf "\n\n >>> INPUT-commands:\n"
2271	fi
2272	printf "\n ${in_command[$i]}"
2273	done
2274	(( i = 0 ))
2275	while (( i < ioc ))
2276	do
2277	(( i = i + 1 ))
2278	if (( i == 1 ))
2279	then
2280	printf "\n\n >>> OUTPUT-commands:\n"
2281	fi
2282	printf "\n ${out_command[$i]}"
2283	done
2284	fi
2285
2286
2287	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2288	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2289	then
2290	antwort=dummy
2291	printf "\n\n"
2292	printf " >>> everything o.k. (y/n) ? "
2293	while read antwort
2294	do
2295	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2296	then
2297	printf " >>> everything o.k. (y/n) ? "
2298	else
2299	break
2300	fi
2301	done
2302	if [[ $antwort = n \|\| $antwort = N ]]
2303	then
2304	locat=user_abort; (( iec = 0 )); exit
2305	fi
2306	if [[ $do_batch = true ]]
2307	then
2308	printf " >>> batch-job will be created and submitted"
2309	else
2310	if [[ $local_compile = false ]]
2311	then
2312	printf " >>> MRUN will now continue to execute on this machine"
2313	else
2314	printf " >>> a test compilation will now be carried out on this machine"
2315	fi
2316	fi
2317	fi
2318
2319
2320	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2321	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2322	check_depository="${working_directory}/trunk/UTIL"
2323	check_sources="${working_directory}/tmp_check_namelist_files"
2324	skip_check=false
2325
2326	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2327	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2328	then
2329	skip_check=true
2330	reason="run on remote host or parameter file check has not been compiled."
2331	fi
2332	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2333	then
2334	skip_check=true
2335	reason="parameter file check has not been compiled."
2336	fi
2337
2338	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2339	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2340	then
2341	skip_check=true
2342	reason="serial run."
2343	fi
2344
2345	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2346	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2347	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2348	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2349	if [[ $check_namelist_files == false ]]
2350	then
2351	skip_check=true
2352	reason="-z option set."
2353	fi
2354
2355	if [[ $fromhost != $localhost ]]
2356	then
2357	skip_check=true
2358	reason="submitting host is local host."
2359	fi
2360
2361	if [[ $run_coupled_model == true ]]
2362	then
2363	skip_check=true
2364	reason="coupled run."
2365	fi
2366
2367	if [[ $restart_run == true ]]
2368	then
2369	skip_check=true
2370	reason="restart run."
2371	fi
2372
2373	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2374	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2375	last_char=`echo $filename_input \| cut -c $last_char_int`
2376	if [[ "$last_char" == "f" ]]
2377	then
2378	skip_check=true
2379	reason="restart run."
2380	fi
2381
2382	if [[ $skip_check == false ]]
2383	then
2384	tmp_check=${working_directory}/tmp_check
2385
2386	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2387	# NOT NECESSARILY REQUIRED
2388	line=""
2389	found=false
2390	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2391	while read line1
2392	do
2393	line="$line1"
2394	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2395	then
2396	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2397	found=true
2398	fi
2399	done < $tmp_check
2400
2401	if [[ $found = false ]]
2402	then
2403	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2404	fi
2405
2406	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2407	# NOT NECESSARILY REQUIRED
2408	line=""
2409	found=false
2410	grep "NUDGING_DATA" $config_file > $tmp_check
2411	while read line1
2412	do
2413	line="$line1"
2414	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2415	then
2416	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2417	found=true
2418	fi
2419	done < $tmp_check
2420
2421	if [[ $found = false ]]
2422	then
2423	printf "\n +++ no NUDGING list entry found in the configuration file."
2424	fi
2425
2426	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2427	# NOT NECESSARILY REQUIRED
2428	line=""
2429	found=false
2430	grep "LSF_DATA" $config_file > $tmp_check
2431	while read line1
2432	do
2433	line="$line1"
2434	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2435	then
2436	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2437	found=true
2438	fi
2439	done < $tmp_check
2440
2441	if [[ $found = false ]]
2442	then
2443	printf "\n +++ no LSF list entry found in the configuration file."
2444	fi
2445
2446	rm -rf ${working_directory}/tmp_check
2447
2448	# CHECK IF THE P3DF FILE MUST BE CHECKED
2449	for item in $input_list
2450	do
2451	if [[ "$item" == "restart" ]]
2452	then
2453	check_restart=1
2454	else
2455	check_restart=0
2456	fi
2457	done
2458
2459	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2460	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2461	then
2462	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2463	locat=check_namelist; exit
2464	fi
2465
2466	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2467	if [[ $check_restart == 1 ]]
2468	then
2469
2470	filenamef="${filename_input}f"
2471	if [[ ! -f $filenamef ]]
2472	then
2473	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2474	check_restart=0
2475	answer=dummy
2476	printf "\n\n"
2477
2478	if [[ $silent == false ]]
2479	then
2480	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2481	do
2482	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2483	read answer
2484	done
2485	if [[ $answer = a \|\| $answer = A ]]
2486	then
2487	printf "\n +++ Aborting...."
2488	locat=normal; exit
2489	fi
2490	fi
2491	else
2492	check_restart=1
2493	fi
2494	fi
2495
2496	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2497	mkdir $check_sources
2498	cd $check_sources
2499
2500
2501	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2502	if [[ -d $add_source_path ]]
2503	then
2504	printf "\n\n *** copying files from $check_depository"
2505	cp $check_depository/check_namelist_files.tar ./
2506
2507	printf "\n\n *** untar of makefile and source files in $check_sources"
2508	tar -xf check_namelist_files.tar > /dev/null 2>&1
2509
2510	printf "\n\n *** adding user code."
2511	cp $add_source_path/* ./
2512	touch check_namelist_files.f90
2513
2514	# GET COMPILER OPTIONS AND PERFORM MAKE
2515	printf "\n\n *** compiling code if necessary...\n"
2516
2517	# workaround for batch jobs on local machine (lcxe6)
2518	if [[ $do_batch == true && $do_remote == false ]]
2519	then
2520	eval $init_cmds
2521	fi
2522
2523	# GET CHECK OPTIONS
2524	line=""
2525	found=false
2526
2527	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2528
2529	while read line1
2530	do
2531
2532	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2533	then
2534	line="$line1"
2535	fi
2536
2537	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2538	then
2539	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2540	line="$line "
2541	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2542	found=true
2543	fi
2544
2545	done < $tmp_check
2546	copts_check="$copts_check -D__check -D__parallel"
2547
2548	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2549
2550	# GET MAKE OUTPUT
2551	if [[ $? != 0 ]]
2552	then
2553	printf "\n +++ error during make."
2554	answer=dummy
2555	printf "\n\n"
2556	if [[ $silent == false ]]
2557	then
2558	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2559	do
2560	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2561	read answer
2562	done
2563	if [[ $answer = a \|\| $answer = A ]]
2564	then
2565	printf "\n +++ Aborting..."
2566	rm -rf $check_sources
2567	locat=normal; exit
2568	else
2569	skip_check=true
2570	fi
2571	else
2572	skip_check=true
2573	fi
2574	fi
2575	else
2576	cp $PALM_BIN/check_namelist_files.x ./
2577	fi
2578
2579	cp $filename_input ./PARIN
2580	if [[ $check_restart == 1 ]]
2581	then
2582	cp $filenamef ./PARINF
2583	fi
2584
2585	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2586	then
2587	printf "\n *** adding topography data"
2588	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2589
2590	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2591	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2592	# WHICH REQUIRE SUFFICIENT MEMORY
2593	ulimit -s unlimited
2594	fi
2595
2596	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2597	then
2598	printf "\n *** adding nudging data"
2599	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2600	fi
2601
2602	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2603	then
2604	printf "\n *** adding large scale forcing data"
2605	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2606	fi
2607
2608	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2609	cat > ENVPAR << %%END%%
2610	&envpar run_identifier = '$fname', host = '$host',
2611	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2612	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2613	maximum_cpu_time_allowed = ${cpumax}.,
2614	revision = '$global_revision',
2615	local_dvrserver_running = $local_dvrserver_running /
2616
2617	%%END%%
2618
2619	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2620	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2621	then
2622	printf "\n +++ WARNING: check_namelist_files.x not found."
2623	answer=dummy
2624	printf "\n\n"
2625
2626	if [[ $silent == false ]]
2627	then
2628	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2629	do
2630	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2631	read answer
2632	done
2633	if [[ $answer = a \|\| $answer = A ]]
2634	then
2635	printf "\n +++ Aborting..."
2636	rm -rf $check_sources
2637	locat=normal; exit
2638	else
2639	printf "\n *** skipping parameter file check."
2640	fi
2641	fi
2642
2643	elif [[ $skip_check == false ]]
2644	then
2645	# STARTING THE PARAMETER FILE CHECK
2646	printf "\n\n *** starting parameter file check..."
2647
2648	# CHECKING THE P3D FILE
2649	printf "\n\n (1) checking $filename_input"
2650	echo "$numprocs 0 0" > VARIN
2651	errors=`./check_namelist_files.x < VARIN 2>&1`
2652
2653	check_error=false
2654	if [[ "$errors" == "" ]]
2655	then
2656	printf " --> o.k."
2657	else
2658	printf " --> failed."
2659	check_error=true
2660	printf "\n\n $errors"
2661	fi
2662
2663	# CHECKING THE PD3F FILE IF NECESSARY
2664	if [[ $check_restart == 1 && $check_error == false ]]
2665	then
2666	printf "\n\n (2) checking $filenamef"
2667
2668	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2669	# IN &INIPAR LIST
2670	found=false
2671	cat PARINF \| while read line
2672	do
2673	line=$(echo $line\|sed 's/ //g')
2674	if [[ $line == "&inipar" ]]
2675	then
2676	start_search=true
2677	fi
2678
2679	if [[ $start_search == true ]]
2680	then
2681	if [[ $line == "initializing_actions='read_restart_data'" ]]
2682	then
2683	found=true
2684	break
2685	fi
2686	fi
2687
2688	if [[ $line == "/" ]]
2689	then
2690	start_search=false
2691	fi
2692
2693	done
2694
2695	if [[ $found = false ]]
2696	then
2697	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2698	printf "\n in &inipar list in $fname$p3df_suffix."
2699	rm -rf $check_sources
2700	locat=check_namelist; exit
2701	fi
2702
2703	# READ max_user_pr FROM FILES
2704	if [[ -f parin_for_check ]]
2705	then
2706	read max_pr_user < parin_for_check
2707	else
2708	max_user_pr=0
2709	fi
2710
2711	echo "$numprocs 1 $max_pr_user" > VARIN
2712	errors=`./check_namelist_files.x < VARIN 2>&1`
2713
2714	if [[ "$errors" == "" ]]
2715	then
2716	printf " --> o.k."
2717	else
2718	printf " --> failed."
2719	check_error=true
2720	printf "\n\n $errors"
2721	fi
2722	fi
2723
2724	# REPORT ERRORS AND CONTINUE/EXIT
2725	if [[ $check_error == true ]]
2726	then
2727	printf "\n +++ errors found in the parameter file!\n"
2728	answer=dummy
2729	printf "\n\n"
2730
2731	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2732	do
2733	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2734	read answer
2735	done
2736
2737	if [[ $answer = a \|\| $answer = A ]]
2738	then
2739	printf "\n +++ Aborting..."
2740	rm -rf $check_sources
2741	locat=normal; exit
2742	fi
2743	else
2744	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2745	fi
2746	rm -rf $check_sources
2747	fi
2748	else
2749	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2750	fi
2751
2752	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2753	rm -rf $check_sources
2754	cd $working_directory
2755
2756
2757	# DETERMINE PATH FOR MAKE DEPOSITORY
2758	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2759	then
2760
2761	line=""
2762	grep "%depository_path" $config_file > tmp_mrun
2763	while read line
2764	do
2765	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2766	then
2767	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2768	then
2769	global_depository_path=`echo $line \| cut -d" " -s -f2`
2770	fi
2771	fi
2772	done < tmp_mrun
2773
2774	line=""
2775	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2776	while read line
2777	do
2778	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2779	then
2780	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2781	then
2782	local_depository_path=`echo $line \| cut -d" " -s -f2`
2783	fi
2784	fi
2785	done < tmp_mrun
2786
2787	if [[ "$local_depository_path" = "" ]]
2788	then
2789	if [[ "$global_depository_path" != "" ]]
2790	then
2791	local_depository_path=$global_depository_path
2792	else
2793	printf "\n\n +++ no depository path found in configuration file"
2794	printf "\n for local host \"$localhost\" "
2795	printf "\n please set \"\%depository_path\" in configuration file\n"
2796	locat=config_file; exit
2797	fi
2798	fi
2799	eval local_depository_path=$local_depository_path
2800	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2801	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2802
2803
2804	basename=`echo $mainprog \| cut -f1 -d"."`
2805	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2806	if [[ ! -f $make_depository ]]
2807	then
2808	printf "\n"
2809	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2810	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2811	fi
2812
2813	fi
2814
2815
2816	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2817	# CHENDE AKTIONEN DURCHGEFUEHRT
2818	if [[ $do_batch = false ]]
2819	then
2820
2821
2822	# TEMPORAEREN KATALOG ERZEUGEN
2823	mkdir -p $TEMPDIR
2824	chmod go+rx $TEMPDIR
2825	tmpcreate=true
2826
2827
2828	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2829	# TEMPORAERES VERZEICHNIS KOPIEREN
2830	if [[ $do_compile = true ]]
2831	then
2832
2833	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2834	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2835	if [[ $localhost = nech ]]
2836	then
2837	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2838	if mkdir -p $TEMPDIR_COMPILE
2839	then
2840	printf "\n *** \"$TEMPDIR_COMPILE\" "
2841	printf "\n is generated as temporary directory for cross compiling\n"
2842	else
2843	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2844	printf "\n needed for cross compilation failed"
2845	locat=compile
2846	exit
2847	fi
2848	else
2849	TEMPDIR_COMPILE=$TEMPDIR
2850	fi
2851
2852	cp $make_depository $TEMPDIR_COMPILE
2853	cd $TEMPDIR_COMPILE
2854	tar -xf $make_depository > /dev/null 2>&1
2855	cd - > /dev/null
2856
2857	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2858	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2859	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2860
2861	else
2862
2863	cp $executable ${TEMPDIR}/a.out
2864
2865	fi
2866
2867
2868	# WECHSEL IN TEMPORAEREN KATALOG
2869	cd $TEMPDIR
2870	printf "\n *** changed to temporary directory: $TEMPDIR"
2871
2872
2873	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2874	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2875	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2876	# ERMITTELN
2877	(( i = 0 ))
2878	while (( i < iout ))
2879	do
2880	(( i = i + 1 ))
2881	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2882	then
2883	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2884	else
2885	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2886	fi
2887	done
2888
2889
2890	# IF REQUIRED, START WITH COMPILING ACTIONS
2891	if [[ $do_compile = true ]]
2892	then
2893
2894
2895	if [[ -f a.out ]]
2896	then
2897
2898	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2899	printf "\n\n\n *** executable a.out found"
2900	printf "\n no compilation required \n"
2901
2902	else
2903
2904	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2905	printf "\n\n\n *** compilation starts \n$striche\n"
2906	printf " *** compilation with make using following options:\n"
2907	printf " make depository: $make_depository"
2908	if [[ "$mopts" != "" ]]
2909	then
2910	printf " make options: $mopts\n"
2911	fi
2912	printf " compilername: $compiler_name\n"
2913	printf " compiler options: $fopts\n"
2914	printf " preprocessor directives: $cpp_options \n"
2915	printf " linker options: $lopts \n"
2916	if [[ "$modules" != "" ]]
2917	then
2918	printf " modules to be load: $modules \n"
2919	fi
2920	printf " source code files: $source_list \n"
2921
2922	if [[ $localhost = nech ]]
2923	then
2924	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2925	cp $TEMPDIR_COMPILE/a.out .
2926	[[ $? != 0 ]] && compile_error=true
2927	rm -rf $TEMPDIR_COMPILE
2928	elif [[ $localhost = ibmh ]]
2929	then
2930	printf " compiler is called via ssh on \"plogin1\" \n"
2931	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2932	[[ ! -f a.out ]] && compile_error=true
2933	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2934	elif [[ $localhost = lcsgib ]]
2935	then
2936	printf " compiler is called via ssh on \"bicegate0\" \n"
2937	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2938	[[ ! -f a.out ]] && compile_error=true
2939	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2940	elif [[ $localhost = lcsgih ]]
2941	then
2942	printf " compiler is called via ssh on \"hicegate0\" \n"
2943	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2944	[[ ! -f a.out ]] && compile_error=true
2945	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2946	elif [[ $localhost = lcflow ]]
2947	then
2948	printf " compiler is called via ssh on \"flow\" \n"
2949	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2950	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2951	[[ "$check_for_file" = "" ]] && compile_error=true
2952	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2953	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf \|\| $localhost = lccrayh ]]
2954	then
2955	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2956	else
2957	[[ "$init_cmds" != "" ]] && eval $init_cmds
2958	[[ "$module_calls" != "" ]] && eval $module_calls
2959	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2960	fi
2961
2962	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2963	then
2964	printf "\n +++ error occured while compiling or linking"
2965	locat=compile
2966
2967	exit
2968	else
2969	printf "$striche\n *** compilation finished \n"
2970	fi
2971
2972	fi
2973
2974	fi
2975
2976
2977	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2978	if [[ $local_compile = true ]]
2979	then
2980	cd $HOME
2981	rm -rf $TEMPDIR
2982	locat=local_compile; exit
2983	fi
2984
2985
2986	# BEREITSTELLEN DER INPUT-DATEIEN
2987	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2988	(( i = 0 ))
2989	while (( i < iin ))
2990	do
2991	(( i = i + 1 ))
2992	if (( i == 1 ))
2993	then
2994	printf "\n\n *** providing INPUT-files:\n$striche"
2995	fi
2996
2997
2998	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2999	if [[ "${transin[$i]}" = unavailable ]]
3000	then
3001	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3002	then
3003	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3004	printf "\n is not available!"
3005	else
3006	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3007	printf "\n is not available!"
3008	fi
3009	continue
3010	fi
3011
3012	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3013	files_for_pes=false; datentyp=file
3014	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3015	then
3016	files_for_pes=true; datentyp=directory
3017	actionin[$i]=""
3018	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3019	then
3020	actionin[$i]=""
3021	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3022	then
3023	files_for_pes=true; datentyp=directory
3024	actionin[$i]="ar"
3025	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3026	then
3027	actionin[$i]="ar"
3028	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3029	then
3030	files_for_pes=true; datentyp=directory
3031	actionin[$i]="fl"
3032	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3033	then
3034	actionin[$i]="fl"
3035	fi
3036
3037	if [[ $files_for_pes = true ]]
3038	then
3039	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3040	else
3041	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3042	fi
3043
3044	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3045	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3046	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3047	# SERVER ZU HOLEN
3048	if [[ "${actionin[$i]}" = fl ]]
3049	then
3050	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3051	if [[ $files_for_pes = false ]]
3052	then
3053	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3054	then
3055	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3056	got_tmp[$i]=true
3057	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3058	then
3059	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3060	printf "\n *** trying to use backup copy in \"$WORK\" "
3061	cp $WORK/${frelin[$i]} ${localin[$i]}
3062	else
3063	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3064	printf "\n or \"$tmp_data_catalog\" does not exist!"
3065	printf "\n *** trying to get copy from archive"
3066	actionin[$i]=ar
3067	fi
3068	else
3069	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3070	then
3071	mkdir ${localin[$i]}
3072	cd $tmp_data_catalog/${frelin[$i]}
3073	for file in $(ls *)
3074	do
3075	ln $file $TEMPDIR/${localin[$i]}
3076	done
3077	cd $TEMPDIR
3078	got_tmp[$i]=true
3079	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3080	then
3081	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3082	printf "\n *** trying to use backup copy in \"$WORK\" "
3083	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3084	else
3085	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3086	printf "\n or \"$tmp_data_catalog\" does not exist!"
3087	printf "\n *** trying to get copy from archive"
3088	actionin[$i]=ar
3089	fi
3090	fi
3091	fi
3092
3093
3094	# DATEI LIEGT AUF ARCHIV-SERVER
3095	if [[ "${actionin[$i]}" = ar ]]
3096	then
3097
3098	if [[ $files_for_pes = false ]]
3099	then
3100	printf "\n file will be restored from archive-system ($archive_system)!"
3101	else
3102	printf "\n directory will be restored from archive-system ($archive_system)!"
3103	fi
3104
3105	file_restored=false
3106
3107	if [[ $archive_system = asterix ]]
3108	then
3109	do_stagein=true
3110	(( stagein_anz = 0 ))
3111	while [[ $do_stagein = true ]]
3112	do
3113	if [[ $files_for_pes = false ]]
3114	then
3115	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3116	else
3117	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3118	fi
3119	cat STAGEIN_OUTPUT
3120	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3121	then
3122	file_restored=true
3123	do_stagein=false
3124	else
3125	(( stagein_anz = stagein_anz + 1 ))
3126	if (( stagein_anz == 10 ))
3127	then
3128	printf "\n +++ stagein stoped after 10 tries"
3129	locat=stage
3130	exit
3131	fi
3132	printf "\n +++ restoring from archive failed, trying again:"
3133	sleep 900
3134	fi
3135	done
3136	elif [[ $archive_system = DMF ]]
3137	then
3138	if [[ $files_for_pes = false ]]
3139	then
3140	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3141	locat=DMF
3142	exit
3143	else
3144	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3145	cp -r $ARCHIVE/${frelin[$i]} $PWD
3146	file_restored=true
3147	fi
3148	elif [[ $archive_system = tivoli ]]
3149	then
3150	if [[ $files_for_pes = false ]]
3151	then
3152	if [[ $localhost = lcsgih ]]
3153	then
3154	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3155	else
3156	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3157	fi
3158	else
3159	(( inode = 0 ))
3160	while (( inode < nodes ))
3161	do
3162	if [[ $localhost = lcsgih ]]
3163	then
3164	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3165	else
3166	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3167	fi
3168	(( inode = inode + 1 ))
3169	done
3170	fi
3171	file_restored=true
3172	elif [[ $archive_system = ut ]]
3173	then
3174	if [[ $files_for_pes = false ]]
3175	then
3176	cp $UT/${frelin[$i]} .
3177	else
3178	(( inode = 0 ))
3179	while (( inode < nodes ))
3180	do
3181	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3182	(( inode = inode + 1 ))
3183	done
3184	fi
3185	file_restored=true
3186	else
3187	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3188	locat=rearchive
3189	exit
3190	fi
3191
3192	if [[ $file_restored = true ]]
3193	then
3194
3195	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3196	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3197	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3198	if [[ $files_for_pes = false ]]
3199	then
3200	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3201	else
3202	mkdir $tmp_data_catalog/${frelin[$i]}
3203	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3204	fi
3205	got_tmp[$i]=true
3206
3207	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3208	mv ${frelin[$i]} ${localin[$i]}
3209
3210	fi
3211	fi
3212
3213
3214	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3215	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3216	then
3217
3218	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3219	then
3220
3221	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3222	printf "\n file will be provided for $numprocs processors"
3223	mkdir ${localin[$i]}
3224	ival=$numprocs
3225	(( ii = 0 ))
3226	while (( ii <= ival-1 ))
3227	do
3228	if (( ii < 10 ))
3229	then
3230	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3231	elif (( ii < 100 ))
3232	then
3233	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3234	elif (( ii < 1000 ))
3235	then
3236	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3237	else
3238	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3239	fi
3240	(( ii = ii + 1 ))
3241	done
3242
3243	else
3244
3245	if [[ $files_for_pes = true ]]
3246	then
3247
3248	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3249	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3250	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3251	# PER MOVE UMBENANNT WERDEN
3252	printf "\n providing $numprocs files for the respective processors"
3253	mkdir ${localin[$i]}
3254	if [[ $link_local_input = true ]]
3255	then
3256	printf " using ln -f\n"
3257	cd ${absnamein[$i]}
3258	for file in $(ls *)
3259	do
3260	ln -f $file ${localin[$i]}
3261	done
3262	cd $TEMPDIR
3263	fi
3264	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3265	if [[ ! -f "${localin[$i]}/_0000" ]]
3266	then
3267	if [[ $link_local_input = true ]]
3268	then
3269	printf " ln failed for .../_0000, using cp...\n"
3270	fi
3271	cp -r ${absnamein[$i]}/* ${localin[$i]}
3272	fi
3273
3274	else
3275	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3276	if [[ $link_local_input = true ]]
3277	then
3278	printf " using ln -f\n"
3279	ln -f ${absnamein[$i]} ${localin[$i]}
3280	fi
3281	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3282	if [[ ! -f "${localin[$i]}" ]]
3283	then
3284	if [[ $link_local_input = true ]]
3285	then
3286	printf " ln failed, using cp...\n"
3287	fi
3288	cp ${absnamein[$i]} ${localin[$i]}
3289	fi
3290	fi
3291	fi
3292	fi
3293
3294	done
3295	if (( i != 0 ))
3296	then
3297	printf "\n$striche\n *** all INPUT-files provided \n"
3298	fi
3299
3300
3301	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3302	(( i = 0 ))
3303	while (( i < iic ))
3304	do
3305	(( i = i + 1 ))
3306	if (( i == 1 ))
3307	then
3308	printf "\n\n *** execution of INPUT-commands:\n$striche"
3309	fi
3310	printf "\n >>> ${in_command[$i]}"
3311	eval ${in_command[$i]}
3312	if (( i == iic ))
3313	then
3314	printf "\n$striche\n"
3315	fi
3316	done
3317
3318
3319	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3320	cpurest=${cpumax}.
3321
3322
3323	# START DVR STREAMING SERVER
3324	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3325	then
3326	if [[ "$dvr_server" != "" ]]
3327	then
3328
3329	printf "\n\n *** preparing the dvr streaming server configuration file"
3330
3331	# Check, if a dvr server is already running
3332	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3333	if [[ "$running_dvrserver_id" != "" ]]
3334	then
3335
3336	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3337	printf "\n This server is used instead starting a new one!"
3338	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3339
3340	else
3341
3342	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3343	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3344	then
3345	cp ${PALM_BIN}/.dvrserver.config .
3346
3347	# Entering the BASEDIR, UID and GID into this file
3348	user_id=`id -u`
3349	group_id=`id -g`
3350	# & is needed as seperator, because TEMPDIR contains /
3351	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3352	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3353	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3354	mv .dvrserver.3 .dvrserver.config
3355	rm .dvrserver.1 .dvrserver.2
3356
3357	# Start dvr server in background, get his id and print on terminal
3358	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3359	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3360	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3361	local_dvrserver_running=.TRUE.
3362	else
3363	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3364	printf "\n \"$PALM_BIN\" "
3365	locat=dvr
3366	exit
3367	fi
3368
3369	fi
3370
3371	else
3372	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3373	fi
3374	fi
3375
3376
3377	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3378	# LESEN VON PALM)
3379	cat > ENVPAR << %%END%%
3380	&envpar run_identifier = '$fname', host = '$localhost',
3381	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3382	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3383	maximum_cpu_time_allowed = ${cpumax}.,
3384	revision = '$global_revision',
3385	local_dvrserver_running = $local_dvrserver_running /
3386
3387	%%END%%
3388
3389
3390	# PROGRAMMSTART
3391	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3392	PATH=$PATH:$TEMPDIR
3393
3394	# MPI debug option (argument checking, slows down execution due to increased latency)
3395	if [[ "$mpi_debug" = true ]]
3396	then
3397	export MPI_CHECK_ARGS=1
3398	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3399	fi
3400
3401	if [[ "$totalview" = true ]]
3402	then
3403	printf "\n *** totalview debugger will be used"
3404	tv_opt="-tv"
3405	else
3406	tv_opt=""
3407	fi
3408
3409	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3410	then
3411	if [[ "$ENVIRONMENT" = BATCH ]]
3412	then
3413	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3414	then
3415	printf "\n +++ debug is allowed in interactive mode only"
3416	locat=debug
3417	exit
3418	fi
3419	fi
3420	if [[ $localhost = ibmh ]]
3421	then
3422
3423	# SETUP THE IBM MPI ENVIRONMENT
3424	export MP_SHARED_MEMORY=yes
3425	export AIXTHREADS_SCOPE=S
3426	export OMP_NUM_THREADS=$threads_per_task
3427	export AUTHSTATE=files
3428	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3429
3430	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3431	export MP_ADAPTER_USE=shared
3432	export MP_CPU_USE=multiple
3433	export MP_TIMEOUT=1200
3434
3435	unset MP_TASK_AFFINITY
3436
3437	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3438	#(( ii = 1 ))
3439	#while (( ii <= $numprocs ))
3440	#do
3441	# echo $localhost_realname >> hostfile
3442	# (( ii = ii + 1 ))
3443	#done
3444	#export MP_HOSTFILE=hostfile
3445
3446	if [[ "$LOADLBATCH" = yes ]]
3447	then
3448	totalview poe a.out $ROPTS
3449	else
3450	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3451	export TVDSVRLAUNCHCMD=ssh
3452	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3453	fi
3454	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3455	then
3456	# CURRENTLY NO DEBUGGER ON LCSGI
3457	if [[ $run_coupled_model = true ]]
3458	then
3459	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3460	locat=debug
3461	exit
3462	else
3463	echo "no_coupling" > runfile_atmos
3464	fi
3465	(( ii = $numprocs / $threads_per_task ))
3466	export OMP_NUM_THREADS=$threads_per_task
3467	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3468	if [[ $threads_per_task != 1 ]]
3469	then
3470	printf "\n threads per task: $threads_per_task"
3471	fi
3472	printf "\n\n"
3473	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3474	then
3475	# export MPI_LAUNCH_TIMEOUT=360
3476	if [[ "$totalview" = true ]]
3477	then
3478	printf "\n running totalview debugger"
3479	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3480	else
3481	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3482	fi
3483	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3484	then
3485	# ulimit -s 300000 # A too large stack size causes problems
3486	# export MV2_NUM_PORTS=2
3487	# export MV2_CPU_MAPPING=0:1:2:3
3488	if [[ "$totalview" = true ]]
3489	then
3490	printf "\n running totalview debugger"
3491	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3492	else
3493	mpiexec ./a.out $ROPTS < runfile_atmos
3494	fi
3495	fi
3496	else
3497	printf "\n +++ no debug available on \"$localhost\" "
3498	printf "\n or not implemented in mrun so far"
3499	locat=debug
3500	exit
3501	fi
3502
3503	# end debug mode
3504	else
3505
3506	# normal execution
3507	if [[ -n $numprocs ]]
3508	then
3509	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3510	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3511	then
3512	# SETUP THE IBM MPI ENVIRONMENT
3513	if [[ $host != ibmh && $host != ibmkisti ]]
3514	then
3515	export MP_SHARED_MEMORY=yes
3516	export AIXTHREAD_SCOPE=S
3517	export OMP_NUM_THREADS=$threads_per_task
3518	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3519	export AUTHSTATE=files
3520	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3521	# export MP_PRINTENV=yes
3522
3523	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3524	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3525	export MP_WAIT_MODE=poll
3526	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3527	fi
3528
3529	if [[ $host = ibmkisti ]]
3530	then
3531	export LANG=en_US
3532	export MP_SHARED_MEMORY=yes
3533	if [[ $threads_per_task = 1 ]]
3534	then
3535	export MP_SINGLE_THREAD=yes
3536	export MEMORY_AFFINITY=MCM
3537	else
3538	export OMP_NUM_THREADS=$threads_per_task
3539	fi
3540	fi
3541
3542	if [[ "$LOADLBATCH" = yes ]]
3543	then
3544	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3545	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3546	then
3547	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3548	else
3549	if [[ $run_coupled_model = false ]]
3550	then
3551	if [[ "$ocean_file_appendix" = true ]]
3552	then
3553	echo "precursor_ocean" > runfile_atmos
3554	else
3555	echo "precursor_atmos" > runfile_atmos
3556	fi
3557	else
3558	(( iia = $numprocs_atmos / $threads_per_task ))
3559	(( iio = $numprocs_ocean / $threads_per_task ))
3560	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3561	printf "\n using $coupled_mode coupling"
3562	printf "\n\n"
3563	echo "coupled_run $iia $iio" > runfile_atmos
3564	fi
3565	poe ./a.out $ROPTS < runfile_atmos
3566	fi
3567	else
3568	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3569	then
3570	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3571	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3572	then
3573	if [[ -f $hostfile ]]
3574	then
3575	cp $hostfile hostfile
3576	else
3577	(( ii = 1 ))
3578	while (( ii <= $numprocs ))
3579	do
3580	echo $localhost_realname >> hostfile
3581	(( ii = ii + 1 ))
3582	done
3583	fi
3584	export MP_HOSTFILE=hostfile
3585	if [[ $run_coupled_model = false ]]
3586	then
3587	if [[ "$ocean_file_appendix" = true ]]
3588	then
3589	echo "precursor_ocean" > runfile_atmos
3590	else
3591	echo "precursor_atmos" > runfile_atmos
3592	fi
3593	else
3594	(( iia = $numprocs_atmos / $threads_per_task ))
3595	(( iio = $numprocs_ocean / $threads_per_task ))
3596	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3597	printf "\n using $coupled_mode coupling"
3598	printf "\n\n"
3599	echo "coupled_run $iia $iio" > runfile_atmos
3600	fi
3601	if [[ $localhost = ibmy ]]
3602	then
3603	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3604	else
3605	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3606	fi
3607
3608	else
3609	if [[ "$host_file" = "" ]]
3610	then
3611	printf "\n +++ no hostfile given in configuration file"
3612	locat=config_file
3613	exit
3614	else
3615	eval host_file=$host_file
3616	fi
3617	export MP_HOSTFILE=$host_file
3618	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3619	fi
3620	fi
3621	elif [[ $host = nech \|\| $host = necriam ]]
3622	then
3623	(( ii = nodes ))
3624	if [[ $ii = 1 ]]
3625	then
3626	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3627	export MPIPROGINF=YES
3628	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3629	echo "*** execution on single node with mpirun"
3630	mpirun -np $numprocs ./a.out $ROPTS
3631	else
3632	(( i = 0 ))
3633	while (( i < ii ))
3634	do
3635	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3636	(( i = i + 1 ))
3637	done
3638
3639	echo "#!/bin/sh" > mpi_exec_shell
3640	echo " " >> mpi_exec_shell
3641	echo "set -u" >> mpi_exec_shell
3642	echo "F_ERRCNT=0" >> mpi_exec_shell
3643	echo "MPIPROGINV=YES" >> mpi_exec_shell
3644	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3645	echo "cpurest=$cpurest" >> mpi_exec_shell
3646	echo "fname=$fname" >> mpi_exec_shell
3647	echo "localhost=$localhost" >> mpi_exec_shell
3648	echo "return_addres=$return_addres" >> mpi_exec_shell
3649	echo "return_username=$return_username" >> mpi_exec_shell
3650	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3651	echo "write_binary=$write_binary" >> mpi_exec_shell
3652	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3653	echo " " >> mpi_exec_shell
3654	echo "export F_ERRCNT" >> mpi_exec_shell
3655	echo "export MPIPROGINV" >> mpi_exec_shell
3656	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3657	echo "export cpurest" >> mpi_exec_shell
3658	echo "export fname" >> mpi_exec_shell
3659	echo "export localhost" >> mpi_exec_shell
3660	echo "export return_addres" >> mpi_exec_shell
3661	echo "export return_username" >> mpi_exec_shell
3662	echo "export tasks_per_node" >> mpi_exec_shell
3663	echo "export write_binary" >> mpi_exec_shell
3664	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3665	echo " " >> mpi_exec_shell
3666	echo "exec ./a.out" >> mpi_exec_shell
3667
3668	chmod u+x mpi_exec_shell
3669	export MPIPROGINF=YES
3670	mpirun -f multinode_config &
3671	wait
3672
3673	fi
3674	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3675	then
3676
3677	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3678	# DOES NOT EXIST
3679	if [[ $host != lccrayb &&$host != lccrayf && $host != lccrayh && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3680	then
3681	if [[ -f $hostfile ]]
3682	then
3683	cp $hostfile hostfile
3684	(( ii = $numprocs / $threads_per_task ))
3685	else
3686	(( ii = 1 ))
3687	while (( ii <= $numprocs / $threads_per_task ))
3688	do
3689	echo $localhost_realname >> hostfile
3690	(( ii = ii + 1 ))
3691	done
3692	fi
3693	eval zeile=\"`head -n $ii hostfile`\"
3694	printf "\n *** running on: $zeile"
3695	fi
3696
3697	(( ii = $numprocs / $threads_per_task ))
3698	export OMP_NUM_THREADS=$threads_per_task
3699	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3700	if [[ $threads_per_task != 1 ]]
3701	then
3702	# increase stack size to unlimited, because large runs
3703	# may abort otherwise
3704	ulimit -Ss unlimited
3705	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3706	fi
3707	if [[ $run_coupled_model = false ]]
3708	then
3709	if [[ "$ocean_file_appendix" = true ]]
3710	then
3711	echo "precursor_ocean" > runfile_atmos
3712	else
3713	echo "precursor_atmos" > runfile_atmos
3714	fi
3715	printf "\n\n"
3716	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3717	then
3718	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3719	then
3720	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3721	# export MPI_DSM_DISTRIBUTE=1
3722	# MPI_DSM_CPULIST: pin MPI processes to cores
3723	if [[ $use_openmp = false ]]
3724	then
3725	if [[ "$sgi_feature" = ice2 ]]
3726	then
3727	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3728	else
3729	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3730	fi
3731	else
3732	unset MPI_DSM_CPULIST
3733	fi
3734	# MPI_IB_RAILS: use both IB rails on ICE2
3735	export MPI_BUFS_PER_HOST=512
3736	export MPI_IB_RAILS=2
3737	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3738	export MPI_CONNECTIONS_THRESHOLD=8192
3739	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3740	export MPI_TYPE_DEPTH=20
3741	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3742	export MPI_GROUP_MAX=64
3743	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3744	if [[ $use_openmp = true ]]
3745	then
3746	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3747	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3748	else
3749	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3750	fi
3751
3752	# next is test for openmp usage
3753	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3754	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3755	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3756	then
3757	export MV2_NUM_PORTS=2
3758	# The default setting of MV2_CPU_MAPPING gives best results
3759	# export MV2_ENABLE_AFFINITY=1
3760	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3761	# if [[ "$sgi_feature" = ice2 ]]
3762	# then
3763	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3764	# else
3765	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3766	# fi
3767	if [[ $use_openmp = true ]]
3768	then
3769	unset MV2_CPU_MAPPING
3770	export MV2_ENABLE_AFFINITY=0
3771	fi
3772	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3773	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3774	if [[ $use_openmp = true ]]
3775	then
3776	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3777	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3778	else
3779	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3780	fi
3781	elif [[ "$mpilib" = impi ]]
3782	then
3783	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3784	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3785	fi
3786	elif [[ $host = lccrayb \|\| $host = lccrayh ]]
3787	then
3788	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3789	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3790	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3791	elif [[ $host = lccrayf ]]
3792	then
3793	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3794	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3795	then
3796	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3797	elif [[ $host = lcflow ]]
3798	then
3799	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3800	elif [[ $host = lcsb ]]
3801	then
3802	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3803	elif [[ $host = lckiaps ]]
3804	then
3805	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3806	elif [[ $host = lckyu* ]]
3807	then
3808	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3809	else
3810	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3811	fi
3812	else
3813
3814	# currently there is no full MPI-2 support on ICE and XT4
3815	(( iia = $numprocs_atmos / $threads_per_task ))
3816	(( iio = $numprocs_ocean / $threads_per_task ))
3817	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3818	printf "\n using $coupled_mode coupling"
3819	printf "\n\n"
3820
3821	if [[ $coupled_mode = "mpi2" ]]
3822	then
3823	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3824	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3825	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3826	then
3827
3828	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3829	then
3830	# export MPI_LAUNCH_TIMEOUT=360
3831	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3832	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3833	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3834	then
3835	# ulimit -s 300000 # A too large stack size causes problems
3836	# export MV2_NUM_PORTS=2
3837	# export MV2_CPU_MAPPING=0:1:2:3
3838	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3839	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3840	fi
3841
3842	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3843	then
3844
3845	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3846	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3847
3848	else
3849	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3850	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3851	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3852	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3853	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3854	fi
3855	wait
3856
3857	else
3858
3859	echo "coupled_run $iia $iio" > runfile_atmos
3860	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3861	then
3862
3863	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3864	then
3865	# export MPI_LAUNCH_TIMEOUT=360
3866	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3867	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3868	then
3869	# ulimit -s 300000 # A too large stack size causes problems
3870	# export MV2_NUM_PORTS=2
3871	# export MV2_CPU_MAPPING=0:1:2:3
3872	mpiexec ./a.out $ROPTS < runfile_atmos
3873	fi
3874
3875	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3876	then
3877
3878	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3879
3880	elif [[ $host = lck \|\| $host = lckordi ]]
3881	then
3882
3883	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3884
3885	elif [[ $host = lckyu* ]]
3886	then
3887
3888	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3889
3890	fi
3891	wait
3892	fi
3893
3894	fi
3895	elif [[ $host = lckyoto ]]
3896	then
3897	set -xv
3898	export P4_RSHCOMMAND=plesh
3899	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3900	if [[ "$ENVIRONMENT" = BATCH ]]
3901	then
3902	if [[ "$cond2" = fujitsu ]]
3903	then
3904	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3905	elif [[ "cond2" = pgi ]]
3906	then
3907	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3908	else
3909	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3910	fi
3911	else
3912	if [[ "$cond2" = "" ]]
3913	then
3914	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3915	else
3916	mpirun -np $numprocs ./a.out $ROPTS
3917	fi
3918	fi
3919	set +xv
3920	elif [[ $host = lctit ]]
3921	then
3922	export OMP_NUM_THREADS=$threads_per_task
3923	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3924	if [[ "$threads_per_task" != 1 ]]
3925	then
3926	export MV2_ENABLE_AFFINITY=0
3927	fi
3928	echo "----- PBS_NODEFILE content:"
3929	cat $PBS_NODEFILE
3930	echo "-----"
3931	(( ii = $numprocs / $threads_per_task ))
3932	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3933	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3934	else
3935	mpprun -n $numprocs a.out $ROPTS
3936	fi
3937	[[ $? != 0 ]] && execution_error=true
3938
3939
3940	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3941	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3942	then
3943	apprentice
3944	fi
3945	else
3946	a.out $ROPTS
3947	fi
3948	fi
3949	if [[ $? != 0 \|\| $execution_error = true ]]
3950	then
3951
3952	# ABBRUCH BEI LAUFZEITFEHLER
3953	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3954	printf "\n +++ runtime error occured"
3955	locat=execution
3956	exit
3957	else
3958	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3959	printf "\n$striche\n *** execution finished \n"
3960
3961	# Stop the dvr streaming server and process the dvr output in order
3962	# to create dvrs- and html-files containing all streams
3963	if [[ "$dvrserver_id" != "" ]]
3964	then
3965	kill $dvrserver_id
3966	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3967
3968	# If there is a directory, data have been output by the
3969	# streaming server. Otherwise, user has chosen dvrp_output=local
3970	if [[ -d DATA_DVR ]]
3971	then
3972
3973	# Add the current dvr configuration file to the dvr output
3974	# directory
3975	cp .dvrserver.config DATA_DVR
3976
3977	# Process the dvr output (option -s for also generating
3978	# sequence mode data)
3979	process_dvr_output -d DATA_DVR -f $fname -s
3980
3981	else
3982
3983	# Process the local output
3984	process_dvr_output -l -d DATA_DVR -f $fname
3985
3986	fi
3987
3988	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3989	then
3990
3991	# Process dvr output generated in local mode (dvrp_output=local)
3992	process_dvr_output -l -d DATA_DVR -f $fname
3993
3994	fi
3995	fi
3996
3997
3998
3999	# Call of combine_plot_fields in order to merge single files written
4000	# by each PE into one file.
4001	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4002	then
4003	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4004	printf "\n 2d- and/or 3d-data may be incomplete!"
4005	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4006	elif [[ "$combine_plot_fields" == true ]]
4007	then
4008	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
4009	then
4010	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
4011	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
4012	else
4013	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4014	combine_plot_fields${block}.x
4015	fi
4016	else
4017	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4018	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4019	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4020	fi
4021
4022
4023
4024	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4025	(( i = 0 ))
4026	while (( i < ioc ))
4027	do
4028	(( i = i + 1 ))
4029	if (( i == 1 ))
4030	then
4031	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4032	fi
4033	printf "\n >>> ${out_command[$i]}"
4034	eval ${out_command[$i]}
4035	if (( i == ioc ))
4036	then
4037	printf "\n$striche\n"
4038	fi
4039	done
4040
4041
4042	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4043	if [[ $do_trace = true ]]
4044	then
4045	printf "\n\n"
4046	ls -al
4047	fi
4048
4049
4050
4051	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4052	(( i = 0 ))
4053	while (( i < iout ))
4054	do
4055	(( i = i + 1 ))
4056	if (( i == 1 ))
4057	then
4058	printf "\n\n *** saving OUTPUT-files:\n$striche"
4059	fi
4060
4061	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4062	files_for_pes=false; filetyp=file
4063	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4064	then
4065	files_for_pes=true; filetyp=directory
4066	actionout[$i]=""
4067	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4068	then
4069	actionout[$i]=""
4070	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4071	then
4072	files_for_pes=true; filetyp=directory
4073	actionout[$i]="ar"
4074	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4075	then
4076	actionout[$i]="ar"
4077	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4078	then
4079	files_for_pes=true; filetyp=directory
4080	actionout[$i]="fl"
4081	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4082	then
4083	actionout[$i]="fl"
4084	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4085	then
4086	files_for_pes=true; filetyp=directory
4087	actionout[$i]="tr"
4088	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4089	then
4090	actionout[$i]="tr"
4091	fi
4092
4093	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4094	then
4095	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4096	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4097	then
4098	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4099	else
4100
4101
4102	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4103	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4104	# REMOTE-RECHNUNGEN
4105	if [[ "${actionout[$i]}" = tr ]]
4106	then
4107	if [[ $localhost != $fromhost ]]
4108	then
4109	if [[ $files_for_pes = false ]]
4110	then
4111	cps=""
4112	cst=""
4113	else
4114	cps=-c
4115	cst="/"
4116	fi
4117	if [[ $localhost = nech ]]
4118	then
4119
4120	# TRANSFER IN EIGENSTAENDIGEM JOB
4121	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4122	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4123	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4124	if [[ $files_for_pes = false ]]
4125	then
4126	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4127	else
4128	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4129	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4130	fi
4131
4132	echo "set -x" > transfer_${localout[$i]}
4133	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4134
4135	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4136	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4137	printf "\n or higher cycle\n"
4138	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4139
4140	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4141
4142	if [[ $localhost = nech ]]
4143	then
4144	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4145	else
4146	if [[ "$LOGNAME" = b323013 ]]
4147	then
4148	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4149	else
4150	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4151	fi
4152	fi
4153
4154	else
4155
4156	# TRANSFER INNERHALB DIESES JOBS
4157	transfer_failed=false
4158	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4159	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4160	if [[ $localhost = lccrayb ]]
4161	then
4162	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4163	elif [[ $localhost = lccrayh ]]
4164	then
4165	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4166	else
4167	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4168	fi
4169	[[ $? != 0 ]] && transfer_failed=true
4170
4171	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4172	# LOKALER MASCHINE ANLEGEN
4173	if [[ $transfer_failed = true ]]
4174	then
4175	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4176	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4177
4178	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4179	# ANLEGEN.
4180	eval local_catalog=${pathout[$i]}
4181	if [[ ! -d $local_catalog ]]
4182	then
4183	printf " *** local directory does not exist. Trying to create:\n"
4184	printf " $local_catalog \n"
4185	mkdir -p $local_catalog
4186	fi
4187	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4188	transfer_problems=true
4189	fi
4190	fi
4191	else
4192
4193	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4194	actionout[$i]=""
4195	fi
4196	fi
4197
4198
4199	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4200	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4201	# REMOTE-RECHNUNGEN
4202	if [[ "${actionout[$i]}" = tra ]]
4203	then
4204	if [[ $localhost != $fromhost ]]
4205	then
4206	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4207	then
4208
4209	# TRANSFER IN EIGENSTAENDIGEM JOB
4210	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4211	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4212	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4213	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4214
4215	echo "set -x" > transfer_${localout[$i]}
4216	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4217
4218	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4219	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4220	printf "\n or higher cycle\n"
4221	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4222
4223	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4224
4225	if [[ $localhost = nech ]]
4226	then
4227	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4228	else
4229	if [[ $LOGNAME = b323013 ]]
4230	then
4231	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4232	else
4233	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4234	fi
4235	fi
4236
4237	else
4238
4239	# TRANSFER INNERHALB DIESES JOBS
4240	transfer_failed=false
4241	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4242	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4243	if [[ $localhost = lccrayb ]]
4244	then
4245	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4246	elif [[ $localhost = lccrayh ]]
4247	then
4248	ssh $usern@hlogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4249	else
4250	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4251	fi
4252	[[ $? != 0 ]] && transfer_failed=true
4253
4254	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4255	# LOKALER MASCHINE ANLEGEN
4256	if [[ $transfer_failed = true ]]
4257	then
4258	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4259	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4260
4261	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4262	# ANLEGEN
4263	eval local_catalog=${pathout[$i]}
4264	if [[ ! -d $local_catalog ]]
4265	then
4266	printf " *** local directory does not exist. Trying to create:\n"
4267	printf " $local_catalog \n"
4268	mkdir -p $local_catalog
4269	fi
4270
4271	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4272	transfer_problems=true
4273	fi
4274	fi
4275	else
4276
4277	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4278	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4279	actionout[$i]=a
4280	fi
4281	fi
4282
4283
4284	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4285	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4286	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4287	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4288	if [[ "${actionout[$i]}" = fl ]]
4289	then
4290	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4291	chmod g+rx $tmp_data_catalog
4292	if [[ $files_for_pes = false ]]
4293	then
4294	printf "\n >>> OUTPUT: ${localout[$i]} to"
4295	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4296	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4297	else
4298	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4299	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4300	mkdir $tmp_data_catalog/${frelout[$i]}
4301	cd ${localout[$i]}
4302	for file in $(ls *)
4303	do
4304	ln -f $file $tmp_data_catalog/${frelout[$i]}
4305	done
4306	cd $TEMPDIR
4307	fi
4308
4309
4310	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4311	if [[ $store_on_archive_system = true ]]
4312	then
4313
4314	if [[ $archive_system = asterix ]]
4315	then
4316	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4317	if [[ $files_for_pes = false ]]
4318	then
4319	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4320	else
4321	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4322	fi
4323	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4324	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4325	echo "then" >> archive_${frelout[$i]}
4326	echo " do_stageout=false" >> archive_${frelout[$i]}
4327	echo "else" >> archive_${frelout[$i]}
4328	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4329	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4330	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4331	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4332	if [[ $files_for_pes = false ]]
4333	then
4334	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4335	else
4336	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4337	fi
4338	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4339	echo "fi" >> archive_${frelout[$i]}
4340	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4341	elif [[ $archive_system = DMF ]]
4342	then
4343	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4344	if [[ $files_for_pes = false ]]
4345	then
4346	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4347	locat=DMF
4348	exit
4349	else
4350	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4351	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4352	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4353	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4354	fi
4355	elif [[ $archive_system = tivoli ]]
4356	then
4357	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4358	if [[ $files_for_pes = false ]]
4359	then
4360	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4361	echo "set -x" >> archive_${frelout[$i]}
4362	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4363	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4364	else
4365
4366	echo "set -x" >> archive_${frelout[$i]}
4367	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4368	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4369	cd $tmp_data_catalog
4370	all_files=`ls -1 ${frelout[$i]}/*`
4371	cd - > /dev/null
4372	(( inode = 0 ))
4373	(( tp1 = tasks_per_node + 1 ))
4374	while (( inode < nodes ))
4375	do
4376	# echo "*** all_files = \"$all_files\" "
4377	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4378	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4379	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4380	# echo "*** files = \"$files\" "
4381	# echo "*** all_files = \"$all_files\" "
4382	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4383	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4384	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4385	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4386	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4387	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4388	(( inode = inode + 1 ))
4389	done
4390	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4391	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4392	fi
4393	elif [[ $archive_system = ut ]]
4394	then
4395	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4396	if [[ $files_for_pes = false ]]
4397	then
4398	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4399	echo "set -x" >> archive_${frelout[$i]}
4400	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4401	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4402	else
4403
4404	echo "set -x" >> archive_${frelout[$i]}
4405	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4406	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4407	cd $tmp_data_catalog
4408	all_files=`ls -1 ${frelout[$i]}/*`
4409	cd - > /dev/null
4410	(( inode = 0 ))
4411	(( tp1 = tasks_per_node + 1 ))
4412	while (( inode < nodes ))
4413	do
4414	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4415	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4416	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4417	(( inode = inode + 1 ))
4418	done
4419	fi
4420	elif [[ $archive_system = none ]]
4421	then
4422	printf " +++ archiving on $localhost not available!\n"
4423	fi
4424
4425	if [[ $archive_system != none ]]
4426	then
4427	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4428	then
4429	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4430	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4431	elif [[ $localhost = nech ]]
4432	then
4433	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4434	fi
4435	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4436	fi
4437	else
4438	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4439	fi
4440
4441
4442	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4443	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4444	if [[ $files_for_pes = false ]]
4445	then
4446	cat /dev/null > ${pathout[$i]}
4447	else
4448	mkdir -p ${pathout[$i]}
4449	fi
4450
4451	fi
4452
4453
4454	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4455	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4456	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4457	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4458	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4459	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4460	if [[ "${actionout[$i]}" = ar ]]
4461	then
4462	if [[ $files_for_pes = false ]]
4463	then
4464	printf "\n >>> OUTPUT: ${localout[$i]} to"
4465	printf "\n ${pathout[$i]}"
4466	printf "\n File will be copied to archive-system ($archive_system) !\n"
4467	else
4468	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4469	printf "\n ${pathout[$i]}"
4470	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4471	fi
4472	mv ${localout[$i]} ${frelout[$i]}
4473
4474	file_saved=false
4475
4476	if [[ $archive_system = asterix ]]
4477	then
4478	do_stageout=true
4479	(( stageout_anz = 0 ))
4480	while [[ $do_stageout = true ]]
4481	do
4482	if [[ $files_for_pes = false ]]
4483	then
4484	stageout ${frelout[$i]} > STAGE_OUTPUT
4485	else
4486	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4487	fi
4488	cat STAGE_OUTPUT
4489	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4490	then
4491	file_saved=true
4492	do_stageout=false
4493	else
4494	if [[ $files_for_pes = false ]]
4495	then
4496	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4497	else
4498	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4499	fi
4500	(( stageout_anz = stageout_anz + 1 ))
4501	if (( stageout_anz == 10 ))
4502	then
4503	printf "\n +++ stoped after 10 unsuccessful tries!"
4504	archive_save=false
4505	do_stageout=false
4506	else
4507	printf "\n *** new try to store on archive after 15 min:"
4508	sleep 900
4509	fi
4510	fi
4511	done
4512	elif [[ $archive_system = DMF ]]
4513	then
4514	if [[ $files_for_pes = false ]]
4515	then
4516	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4517	locat=DMF
4518	exit
4519	else
4520	rm -rf $ARCHIVE/${frelout[$i]}
4521	cp -r ${frelout[$i]} $ARCHIVE
4522	fi
4523	file_saved=true
4524	elif [[ $archive_system = tivoli ]]
4525	then
4526	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4527	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4528	# GELEGT WERDEN
4529	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4530	chmod g+rx $tmp_data_catalog
4531	if [[ $files_for_pes = false ]]
4532	then
4533	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4534	else
4535	mkdir $tmp_data_catalog/${frelout[$i]}
4536	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4537	fi
4538
4539	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4540	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4541	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4542	if [[ $files_for_pes = false ]]
4543	then
4544	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4545	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4546	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4547	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4548	else
4549	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4550	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4551	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4552	fi
4553
4554	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4555	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4556	file_saved=true
4557
4558	elif [[ $archive_system = ut ]]
4559	then
4560	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4561	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4562	# GELEGT WERDEN
4563	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4564	chmod g+rx $tmp_data_catalog
4565	if [[ $files_for_pes = false ]]
4566	then
4567	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4568	else
4569	mkdir $tmp_data_catalog/${frelout[$i]}
4570	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4571	fi
4572
4573	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4574	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4575	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4576	if [[ $files_for_pes = false ]]
4577	then
4578	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4579	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4580	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4581	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4582	else
4583	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4584	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4585	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4586	fi
4587
4588	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4589	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4590	file_saved=true
4591
4592	else
4593	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4594	archive_save=false
4595	fi
4596	if [[ $file_saved = true ]]
4597	then
4598	if [[ $files_for_pes = false ]]
4599	then
4600	cat /dev/null > ${pathout[$i]}
4601	else
4602	mkdir -p ${pathout[$i]}
4603	fi
4604	fi
4605	fi
4606
4607	# APPEND AUF LOKALER MASCHINE
4608	if [[ "${actionout[$i]}" = "a" ]]
4609	then
4610	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4611	then
4612	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4613	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4614	else
4615	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4616	cat ${localout[$i]} >> ${pathout[$i]}
4617	fi
4618	fi
4619
4620	# KOPIEREN AUF LOKALER MASCHINE
4621	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4622	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4623	then
4624
4625	# KOPIEREN AUF EINPROZESSORMASCHINE
4626	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4627	then
4628	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4629	if [[ $link_local_output = true ]]
4630	then
4631	printf " using ln -f\n"
4632	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4633	fi
4634	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4635	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4636	then
4637	if [[ $link_local_output = true ]]
4638	then
4639	printf " ln failed, using cp...\n"
4640	fi
4641	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4642	fi
4643	else
4644	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4645	if [[ $link_local_output = true ]]
4646	then
4647	printf " using ln -f\n"
4648	ln -f ${localout[$i]} ${pathout[$i]}
4649	fi
4650	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4651	if [[ ! -f "${pathout[$i]}" ]]
4652	then
4653	if [[ $link_local_output = true ]]
4654	then
4655	printf " ln failed, using cp...\n"
4656	fi
4657	cp ${localout[$i]} ${pathout[$i]}
4658	fi
4659	fi
4660
4661	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4662	then
4663
4664	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4665	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4666	# WIRD DANN KOPIERT
4667	# PER MOVE UMBENANNT WERDEN
4668	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4669	if [[ $link_local_output = true ]]
4670	then
4671	printf " using ln -f\n"
4672	mkdir ${pathout[$i]}
4673	cd ${localout[$i]}
4674	for file in $(ls *)
4675	do
4676	ln -f $file ${pathout[$i]}
4677	done
4678	cd $TEMPDIR
4679	fi
4680	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4681	if [[ ! -f "${pathout[$i]}/_0000" ]]
4682	then
4683	if [[ $link_local_output = true ]]
4684	then
4685	printf " ln failed for .../_0000, using cp...\n"
4686	fi
4687	cp -r ${localout[$i]} ${pathout[$i]}
4688	fi
4689
4690	fi
4691	fi
4692	done
4693	if (( i != 0 ))
4694	then
4695	if [[ $transfer_problems = true ]]
4696	then
4697	printf "\n$striche\n *** OUTPUT-files saved"
4698	printf "\n +++ WARNING: some data transfers failed! \n"
4699	else
4700	printf "\n$striche\n *** all OUTPUT-files saved \n"
4701	fi
4702	fi
4703
4704
4705	# EVENTUELL FOLGEJOB STARTEN
4706	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4707	if [[ -f CONTINUE_RUN ]]
4708	then
4709
4710	if [[ $archive_save = true ]]
4711	then
4712
4713	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4714	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4715	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4716	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4717	# HANDEN
4718	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4719	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4720	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4721	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4722	then
4723	mc=`echo $mc \| sed 's/#/f/g'`
4724	fi
4725
4726
4727	# JOB STARTEN
4728	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4729	echo " $mc"
4730	printf "\n$striche\n"
4731	if [[ $localhost != $fromhost ]]
4732	then
4733
4734	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = lccrayh \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4735	then
4736	echo "*** ssh will be used to initiate restart-runs!"
4737	echo " return_addres=\"$return_addres\" "
4738	echo " return_username=\"$return_username\" "
4739	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4740	then
4741	if [[ $localhost = ibmh ]]
4742	then
4743	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4744	elif [[ $localhost = lccrayb ]]
4745	then
4746	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4747	elif [[ $localhost = lccrayh ]]
4748	then
4749	ssh $usern@hlogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4750
4751	else
4752	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4753	fi
4754	else
4755	if [[ $localhost = ibmkisti ]]
4756	then
4757	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4758	elif [[ $localhost = lcflow ]]
4759	then
4760	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4761	elif [[ $localhost = lccrayb ]]
4762	then
4763	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4764	elif [[ $localhost = lccrayh ]]
4765	then
4766	ssh $usern@130.75.4.1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4767	else
4768	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4769	fi
4770	fi
4771	else
4772	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4773	locat=restart; exit
4774	fi
4775
4776	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4777	# DER AKTUELLE JOB ENDET
4778	if [[ $queue = special1q ]]
4779	then
4780	sleep 120
4781	else
4782	sleep 30
4783	fi
4784
4785	else
4786
4787	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4788	# RUFEN WERDEN, AUSSER AUF lcfimm
4789	cd $LOCAL_PWD
4790	if [[ $localhost = lcfimm ]]
4791	then
4792	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4793	elif [[ $localhost = lckyuh ]]
4794	then
4795	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4796	printf "\n please restart job manually using command:\n"
4797	printf "\n \"$mc\" "
4798	else
4799	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4800	fi
4801	cd - > /dev/null
4802	fi
4803	if [[ $localhost = lckyuh ]]
4804	then
4805	printf "\n$striche\n *** restart-run to be initiated manually\n"
4806	else
4807	printf "\n$striche\n *** restart-run initiated \n"
4808	fi
4809
4810
4811	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4812	# GEHOLT WORDEN SIND, LOESCHEN
4813	(( i = 0 ))
4814	while (( i < iin ))
4815	do
4816	(( i = i + 1 ))
4817	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4818	then
4819	rm -r $tmp_data_catalog/${frelin[$i]}
4820	fi
4821	done
4822
4823	else
4824
4825	printf "\n +++ no restart-run possible, since errors occured"
4826	printf "\n during the archive process"
4827	fi
4828
4829	fi
4830
4831
4832
4833	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4834	if [[ "$email_notification" != "none" ]]
4835	then
4836
4837	if [[ $localhost != $fromhost ]]
4838	then
4839	if [[ -f CONTINUE_RUN ]]
4840	then
4841	echo "PALM restart run necessary" > email_text
4842	echo "description header of actual run:" >> email_text
4843	cat CONTINUE_RUN >> email_text
4844	echo "mrun-command to restart:" >> email_text
4845	echo "$mc" >> email_text
4846	else
4847	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4848	fi
4849	mail $email_notification < email_text
4850	printf "\n *** email notification sent to \"$email_notification\" "
4851	fi
4852	fi
4853
4854
4855
4856	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4857	cd $HOME
4858	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4859
4860	else
4861
4862
4863	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4864	# CHENDE AKTIONEN DURCHGEFUEHRT
4865
4866	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4867	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4868	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4869	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4870	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4871	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4872	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4873	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4874	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4875	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4876	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4877	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4878	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4879	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4880	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4881	if [[ $use_openmp = true ]]
4882	then
4883	mrun_com=${mrun_com}" -O $threads_per_task"
4884	fi
4885	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4886	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4887	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4888	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4889	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4890	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4891	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4892	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4893	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4894	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4895	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4896	if [[ $do_remote = true ]]
4897	then
4898	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4899	fi
4900
4901
4902	# create executable for batch job
4903	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4904	then
4905
4906	printf "\n *** creating the executable for batch job\n"
4907
4908	# method only works for batch jobs on local hosts
4909	if [[ $host != $localhost ]]
4910	then
4911	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4912	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4913	locat=create_executable; exit
4914	fi
4915
4916	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4917	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4918
4919	cp $make_depository .
4920	tar -xf $make_depository > /dev/null 2>&1
4921	cp ../* . > /dev/null 2>&1
4922
4923	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4924
4925	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4926	then
4927	printf "\n +++ error occured while compiling or linking"
4928	locat=compile
4929	exit
4930	fi
4931
4932	mv a.out ..
4933	cd - > /dev/null 2>&1
4934	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4935
4936	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4937
4938	fi
4939
4940
4941	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4942	jobfile=jobfile.$RANDOM
4943
4944
4945	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4946	echo "mkdir $TEMPDIR" >> $jobfile
4947	echo "cd $TEMPDIR" >> $jobfile
4948
4949
4950	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4951	if [[ $do_trace = true ]]
4952	then
4953	echo "set -x" >> $jobfile
4954	else
4955	echo "set +vx" >> $jobfile
4956	fi
4957
4958
4959	# initialize the environment and load modules
4960	if [[ "$init_cmds" != "" ]]
4961	then
4962	echo "$init_cmds" >> $jobfile
4963	fi
4964	if [[ "$module_calls" != "" ]]
4965	then
4966	echo "$module_calls" >> $jobfile
4967	fi
4968
4969
4970	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4971	# DATEI FUER DEN JOB
4972	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf \|\| $host = lccrayh ]]
4973	then
4974
4975	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4976	# KOPIEREN
4977	if [[ $restart_run != true ]]
4978	then
4979	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4980	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4981	fi
4982
4983	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4984	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4985	echo "set -x" >> $jobfile
4986	if [[ $host = $localhost ]]
4987	then
4988
4989	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4990	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4991	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4992
4993	else
4994	if [[ $host = ibmkisti ]]
4995	then
4996	# on KISTI's IBM firewall is only opened on interactive node
4997	echo "localdir=\`pwd\`" >> $jobfile
4998	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4999	elif [[ $host = lccrayb ]]
5000	then
5001	echo "localdir=\`pwd\`" >> $jobfile
5002	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5003	elif [[ $host = lccrayh ]]
5004	then
5005	echo "localdir=\`pwd\`" >> $jobfile
5006	echo "ssh $SSH_PORTOPT $remote_username@hlogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
5007
5008	else
5009	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
5010	fi
5011	fi
5012	echo "export SOURCES_COMPLETE=true" >> $jobfile
5013
5014	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
5015	# ARBEITSVERZEICHNIS VERSCHIEBEN
5016	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
5017	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
5018	echo "chmod u+rwx $mrun_script_name" >> $jobfile
5019	echo "execute_mrun=true" >> $jobfile
5020	echo " " >> $jobfile
5021
5022	else
5023
5024	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
5025	# SOWIE GEGEBENENFALLS DES MAKEFILES
5026	if [[ $do_compile = true ]]
5027	then
5028
5029	source_catalog=SOURCES_FOR_RUN_$fname
5030
5031	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
5032	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
5033	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
5034	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
5035	echo "export SOURCES_COMPLETE=true" >> $jobfile
5036	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
5037
5038	for filename in $source_list
5039	do
5040	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5041	echo "cat > $filename << \"%END%\"" >> $jobfile
5042	cat $source_catalog/$filename >> $jobfile
5043	echo " " >> $jobfile
5044	echo "%END%" >> $jobfile
5045	echo " " >> $jobfile
5046	done
5047
5048	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5049	echo "cat > Makefile << \"%END%\"" >> $jobfile
5050	cat $source_catalog/Makefile >> $jobfile
5051	echo " " >> $jobfile
5052	echo "%END%" >> $jobfile
5053	echo " " >> $jobfile
5054
5055	echo "cd - > /dev/null" >> $jobfile
5056
5057	fi
5058
5059
5060	# ABSPEICHERN DER KONFIGURATIONSDATEI
5061	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5062	# Lines with #$ coming from the svn keyword substitution are
5063	# removed from the config file in order to avoid problems
5064	# with the SGE batch system
5065	echo "cat > $config_file << \"%END%\"" >> $jobfile
5066	if [[ $host = lckyuh ]]
5067	then
5068	# no cross compiler on compute node
5069	sed 's/frtpx/frt/g' $config_file >> $jobfile
5070	else
5071	sed 's/#$.*//g' $config_file >> $jobfile
5072	fi
5073	echo "%END%" >> $jobfile
5074	echo " " >> $jobfile
5075
5076
5077	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5078	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5079	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5080	if [[ $host = lckyuh ]]
5081	then
5082	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5083	else
5084	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5085	fi
5086	echo "%END%" >> $jobfile
5087	echo "chmod u+x $mrun_script_name" >> $jobfile
5088	echo "execute_mrun=true" >> $jobfile
5089	echo " " >> $jobfile
5090
5091	fi
5092
5093
5094	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5095	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5096	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5097	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5098	if [[ $do_remote = true ]]
5099	then
5100	(( i = 0 ))
5101	while (( i < iin ))
5102	do
5103	(( i = i + 1 ))
5104	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5105	if [[ "${transin[$i]}" = job ]]
5106	then
5107	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5108	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5109	echo " " >> $jobfile
5110	echo "%END%" >> $jobfile
5111	else
5112	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5113	fi
5114
5115	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5116	echo "if [[ \$? = 1 ]]" >> $jobfile
5117	echo "then" >> $jobfile
5118	echo " echo \" \" " >> $jobfile
5119	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5120	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5121	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5122	echo " execute_mrun=false" >> $jobfile
5123	echo "fi" >> $jobfile
5124	done
5125	fi
5126
5127	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5128	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5129	echo "LOCAL_PWD=$working_directory" >> $jobfile
5130	echo "export LOCAL_PWD" >> $jobfile
5131
5132	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5133	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5134	echo "export LOCAL_MRUN_PATH" >> $jobfile
5135
5136	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5137	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5138	then
5139	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5140	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5141	then
5142	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5143	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5144	fi
5145
5146	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5147	echo "set -x" >> $jobfile
5148	echo "queue=$queue" >> $jobfile
5149	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5150	echo 'ls -al; echo `pwd`' >> $jobfile
5151	echo "cd \$HOME" >> $jobfile
5152	echo "rm -rf $TEMPDIR" >> $jobfile
5153
5154
5155
5156
5157	# JOB PER SUBJOB STARTEN
5158	if [[ $silent = false ]]
5159	then
5160	printf "\n "
5161	else
5162	printf "\n\n"
5163	fi
5164
5165	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5166	rm -rf $jobfile
5167
5168
5169	fi # ENDE REMOTE-TEIL
5170
5171
5172
5173	# ENDE DER PROZEDUR

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