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source: palm/trunk/SCRIPTS/mrun @ 1272

Last change on this file since 1272 was 1272, checked in by witha, 10 years ago
small adjustment for lcflow
Property svn:keywords set to `Id Rev`
File size: 188.6 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# small adjustment for lcflow
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1272 2014-01-08 10:19:32Z witha $
29	#
30	# 1270 2013-12-16 11:05:01Z fricke
31	# call of combine_plot_fields adjusted for lccrayb/lccrayh
32	#
33	# 1255 2013-11-07 14:43:35Z raasch
34	# further adjustments for lccrayb remote access
35	#
36	# 1241 2013-10-30 11:36:58Z heinze
37	# Enable use of nudging input and input of large scale forcing from
38	# external files
39	#
40	# 1229 2013-09-20 06:55:19Z raasch
41	# further adjustments for lccrayb
42	#
43	# 1224 2013-09-16 07:27:23Z raasch
44	# first adjustments for lccrayb
45	#
46	# 1210 2013-08-14 10:58:20Z raasch
47	# fftw support added
48	#
49	# 1201 2013-07-10 16:17:59Z witha
50	# adjustments for Forwind cluster (lcflow)
51	#
52	# 1199 2013-07-05 14:52:22Z raasch
53	# adjustments for CSC Helsinki (lccrayf),
54	# executables for batch jobs can be created in advance, in order to avoid calling
55	# the compiler within the batch job (only works if batch jobs are submitted on
56	# local host)
57	#
58	# 1190 2013-06-25 09:39:21Z heinze
59	# enable use of automatic restarts for ibmh
60	# use of cluster/express queue enabled (ibmh)
61	#
62	# 1124 2013-04-09 15:46:52Z raasch
63	# variable "memory" is exported via typeset option -x, because otherwise an unknown
64	# side effect may lead to data loss while getopts is reading the script-option arguments
65	#
66	# 1122 2013-04-09 08:37:16Z heinze
67	# Bugfix: change type of variable last_char
68	#
69	# 1119 2013-04-05 15:11:19Z raasch
70	# Bugfix for setting -T option for subjob
71	#
72	# 1108 2013-03-05 07:03:32Z raasch
73	# bugfix for coupled runs on lckyut/lckyuh
74	#
75	# 1106 2013-03-04 05:31:38Z raasch
76	# --stdin argument for mpiexec on lckyuh
77	# -y and -Y settings output to header
78	#
79	# 1103 2013-02-20 02:15:53Z raasch
80	# default script runs again under ksh, because of unsolved problems with read
81	# from stdin: when bash script is called from a ksh, message "read error: 0:
82	# Resource temporarily unavailable" appears and script does not stop,
83	# further bash compatibility adjustments,
84	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
85	# on lckyuh, but mrun does not terminate and issues a warning instead
86	#
87	# 1101 2013-02-17 10:20:21Z raasch
88	# script now running under bash instead of ksh, which required small adjustments
89	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
90	# read from stdin),
91	# cross compilername on lckyuh compute nodes replaced by real compiler name
92	#
93	# 1099 2013-02-10 01:47:43Z raasch
94	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
95	# and for Forwind cluster (lcflow)
96	# small further adjustments for lckyut
97	#
98	# 1094 2013-02-03 01:52:12Z raasch
99	# explicit ssh/scp port can be set in config file with environment variable
100	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
101	# decalpha parts (yonsei) removed
102	#
103	# 2013-02-02 07:06:13Z raasch
104	# adjustments for Kyushu-University computing center (lckyut - tatara)
105	#
106	# 1083 2013-01-04 10:22:09Z maronga
107	# bugfix in parameter file check (read %cpp_options was missing)
108	#
109	# 1069 2012-11-28 16:18:43Z maronga
110	# bugfix: coupling mode was always set to mpi2, typos removed
111	#
112	# 1058 2012-11-21 07:00:35Z raasch
113	# Intel inspector (inspxe) is given the number of PEs instead of the number of
114	# nodes
115	#
116	# 1046 2012-11-09 14:38:45Z maronga
117	# code put under GPL (PALM 3.9)
118	#
119	# 21/03/94 - Siggi - first version finished
120	# 03/03/94 - Siggi - script development started
121	#
122	#--------------------------------------------------------------------------------#
123	# mrun - script for running PALM jobs
124	#--------------------------------------------------------------------------------#
125
126
127
128	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
129
130	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
131	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
132	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
133
134	AddFilenames=""
135	additional_conditions=""
136	add_source_path=""
137	afname=""
138	archive_save=true
139	archive_system=none
140	check_namelist_files=true
141	combine_plot_fields=true
142	compiler_name=""
143	cond1=""
144	cond2=""
145	config_file=.mrun.config
146	coupled_dist=""
147	coupled_mode="mpi1"
148	cpp_opts=""
149	cpp_options=""
150	cpumax=0
151	cpurest=0
152	create_executable_for_batch=false
153	delete_temporary_catalog=true
154	do_batch=false
155	do_compile=true
156	do_remote=false
157	do_stagein=true
158	do_stageout=true
159	do_trace=false
160	email_notification="none"
161	exclude=""
162	executable=""
163	execution_error=false
164	fftw_inc=""
165	fftw_lib=""
166	fftw_support=false
167	fimm=false
168	fname=test
169	fromhost=""
170	global_revision=""
171	group_number=none
172	host=""
173	host_file=""
174	hp=""
175	ignore_archive_error=false
176	input_list=""
177	interpreted_config_file=""
178	job_catalog="~/job_queue"
179	job_on_file=""
180	keep_data_from_previous_run=false
181	link_local_input=false
182	link_local_output=false
183	localhost_realname=$(hostname)
184	local_compile=false
185	local_dvrserver_running=.FALSE.
186	locat=normal
187	mainprog=""
188	makefile=""
189	max_par_io_str=""
190	mc=$0
191	while [[ $(echo $mc \| grep -c "/") != 0 ]]
192	do
193	mc=`echo $mc \| cut -f2- -d"/"`
194	done
195	module_calls=""
196	mrun_script_name=$mc
197	netcdf_inc=""
198	netcdf_lib=""
199	netcdf_support=false
200	node_usage=default
201	numprocs=""
202	numprocs_atmos=0
203	numprocs_ocean=0
204	OOPT=""
205	openmp=false
206	output_list=""
207	package_list=""
208	punkte="..........................................................."
209	queue=none
210	read_from_config=""
211	restart_run=false
212	if [[ `hostname` = rte10 ]]
213	then
214	return_addres=133.5.185.60
215	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
216	elif [[ `hostname` = climate0 ]]
217	then
218	return_addres=165.132.26.68
219	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
220	elif [[ `hostname` = urban00 ]]
221	then
222	return_addres=147.46.30.151
223	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
224	else
225	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
226	fi
227	return_password=""
228	return_username=$LOGNAME
229	remotecall=false
230	remote_username=""
231	run_coupled_model=false
232	run_mode=""
233	scirocco=false
234	store_on_archive_system=false
235	striche=" ----------------------------------------------------------------------------"
236	silent=false
237	source_list=""
238	source_path=SOURCE
239	tasks_per_node=""
240	threads_per_task=1
241	tmpcreate=false
242	tmp_data_catalog=""
243	transfer_problems=false
244	usern=$LOGNAME
245	use_openmp=false
246	version="MRUN 2.0 Rev$Rev: 1272 $"
247	working_directory=`pwd`
248	TOPT=""
249	XOPT=""
250	zeit=$( date \| cut -c 12-19 )
251
252	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
253	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
254	# effect may cause data loss when getopts is reading the
255	# script-option arguments
256	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
257
258
259
260
261	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
262	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
263
264	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
265	# EXPORTIERT WERDEN
266	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
267	export group_number input_list numprocs output_list queue run_mode
268
269
270
271	# FEHLERBEHANDLUNG
272	# BEI EXIT:
273	trap 'rm -rf $working_directory/tmp_mrun
274	if [[ $locat != localhost ]]
275	then
276	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
277	# then
278	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
279	#MRUN-calls on $localhost
280	#
281	#date and time user localhost remotehost termination mrun-command
282	#--------------------------------------------------------------------------------------------------------------------
283	#%STATEND%
284	# chmod 666 ${mrun_path}/statistik/mrun_statistik
285	# fi
286	#
287	# # EINTRAG IN DIE STATISTIK-DATEI
288	# string1=`date` #-L35
289	# string2=$usern #-L12
290	# string3=$localhost_realname #-L12
291	# string4=$host #-L12
292	# string5=$locat #-L12
293	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
294	# then
295	# if [[ $do_batch = true ]]
296	# then
297	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
298	# else
299	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
300	# fi
301	# fi
302	echo " " > /dev/null
303	fi
304
305	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
306	then
307
308	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
309	(( i = 0 ))
310	while (( i < iec ))
311	do
312	(( i = i + 1 ))
313	printf "\n *** Execution of ERROR-command:\n"
314	printf " >>> ${err_command[$i]}\n"
315	eval ${err_command[$i]}
316	done
317	if [[ -n $interpreted_config_file ]]
318	then
319	rm -rf $interpreted_config_file
320	fi
321	if [[ -n .mrun_environment ]]
322	then
323	rm -rf .mrun_environment
324	fi
325	if [[ $tmpcreate = true ]]
326	then
327	printf "\n *** Contents of \"$TEMPDIR\":\n"
328	ls -al; cd
329	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
330	fi
331	if [[ "$dvrserver_id" != "" ]]
332	then
333	echo "+++ killing dvrserver_id=$dvrserver_id"
334	kill $dvrserver_id
335	fi
336	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
337	then
338	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
339	fi
340	printf "\n\n+++ MRUN killed \n\n"
341	elif [[ $locat != control_c ]]
342	then
343	printf "\n\n --> all actions finished\n\n"
344	printf " Bye, bye $usern !!\n\n"
345	fi' exit
346
347
348	# BEI TERMINAL-BREAK:
349	trap 'rm -rf $working_directory/tmp_mrun
350	rm -rf $working_directory/tmp_check_namelist_files
351	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
352	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
353	then
354	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
355	fi
356	if [[ "$dvrserver_id" != "" ]]
357	then
358	echo "+++ killing dvrserver_id=$dvrserver_id"
359	kill $dvrserver_id
360	fi
361	printf "\n+++ MRUN killed by \"^C\" \n\n"
362	locat=control_c
363	exit
364	' 2
365
366
367	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
368	# BEEN SET
369	if [[ "$PALM_BIN" = "" ]]
370	then
371	printf "\n +++ environment variable PALM_BIN has not been set"
372	printf "\n please set it to the directory where the PALM scripts are located"
373	locat=palm_bin; exit
374	fi
375	export PATH=$PALM_BIN:$PATH
376
377
378
379	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
380	# FUER FOLGEJOBS BENOETIGT WIRD
381	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
382	do
383	case $option in
384	(a) afname=$OPTARG;;
385	(A) store_on_archive_system=true; mc="$mc -A";;
386	(b) do_batch=true; mc="$mc -b";;
387	(B) delete_temporary_catalog=false; mc="$mc -B";;
388	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
389	(C) restart_run=true; mc="$mc -C";;
390	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
391	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
392	(F) job_on_file="-D"; mc="$mc -F";;
393	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
394	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
395	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
396	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
397	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
398	(I) ignore_archive_error=true; mc="$mc -I";;
399	(k) keep_data_from_previous_run=true; mc="$mc -k";;
400	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
401	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
402	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
403	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
404	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
405	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
406	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
407	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
408	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
409	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
410	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
411	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
412	(S) read_from_config=false; mc="$mc -S";;
413	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
414	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
415	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
416	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
417	(v) silent=true; mc="$mc -v";;
418	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
419	(x) do_trace=true;set -x; mc="$mc -x";;
420	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
421	(y) ocean_file_appendix=true; mc="$mc -y";;
422	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
423	(z) check_namelist_files=false; mc="$mc -z";;
424	(Z) combine_plot_fields=false; mc="$mc -Z";;
425	(\?) printf "\n +++ unknown option $OPTARG \n"
426	printf "\n --> type \"$0 ?\" for available options \n"
427	locat=parameter;exit;;
428	esac
429	done
430
431
432	# EVTL. POSITIONSPARAMETER EINLESEN
433	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
434	(( to_shift = $OPTIND - 1 ))
435	shift $to_shift
436
437	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
438	if [[ "$1" = "?" ]]
439	then
440	(printf "\n *** mrun can be called as follows:\n"
441	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
442	printf "\n Description of available options:\n"
443	printf "\n Option Description Default-Value"
444	printf "\n -a base name of input files equiv. -d"
445	printf "\n -A archiving when using file-attribute fl"
446	printf "\n -b batch-job on local machine ---"
447	printf "\n -B do not delete temporary directory at end ---"
448	printf "\n -c configuration file .mrun.config"
449	printf "\n -d base name of files attached to program test"
450	printf "\n -D preprocessor(cpp)-directives \"\" "
451	printf "\n -F create remote job file only ---"
452	printf "\n -h execution host $localhost_realname"
453	printf "\n -i INPUT control list \"\" "
454	printf "\n -I archiving errors of previous batch-jobs"
455	printf "\n will be ignored"
456	printf "\n -k keep data from previous run"
457	printf "\n -K additional conditions for controling"
458	printf "\n usage of conditional code and"
459	printf "\n env-variables in configuration file \"\" "
460	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
461	printf "\n -M Makefile name Makefile"
462	printf "\n -n node usage (shared/not_shared) depending on -h"
463	printf "\n -o OUTPUT control list \"\" "
464	printf "\n -O use OpenMP ---"
465	printf "\n -p software package list \"\" "
466	printf "\n -q queue \"$queue\" "
467	printf "\n -r run control list (combines -i -o) \"\" "
468	printf "\n -s filenames of routines to be compiled \"\" "
469	printf "\n must end with .f, .f90, .F, or .c !"
470	printf "\n use \"..\" for more than one file and wildcards"
471	printf "\n -s LM compiles all locally modified files"
472	printf "\n -S config file interpreted by shellscript ---"
473	printf "\n -t allowed cpu-time in seconds (batch) 0"
474	printf "\n -T tasks per node depending on -h"
475	printf "\n -u username on remote machine \"\" "
476	printf "\n -v no prompt for confirmation ---"
477	printf "\n -w maximum parallel io streams as given by -X"
478	printf "\n -x tracing of mrun for debug purposes ---"
479	printf "\n -X # of processors (on parallel machines) 1"
480	printf "\n -y add appendix \"_O\" to all local output"
481	printf "\n files (ocean precursor runs followed by"
482	printf "\n coupled atmosphere-ocean runs) ---"
483	printf "\n -Y run coupled model, \"#1 #2\" with"
484	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
485	printf "\n -z disable a priori parameter file check ---"
486	printf "\n -Z skip combine_plot_fields at the end of "
487	printf "\n the simulation ---"
488	printf "\n "
489	printf "\n Possible values of positional parameter <modus>:"
490	printf "\n \"?\" - this outline \n\n") \| more
491	exit
492	elif [[ "$1" != "" ]]
493	then
494	printf "\n +++ positional parameter $1 unknown \n"
495	locat=parameter; exit
496	fi
497
498
499
500	# KURZE STARTMELDUNG
501	printf "\n*** $version "
502	printf "\n will be executed. Please wait ..."
503
504
505
506	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
507	if [[ ! -f $config_file ]]
508	then
509	printf "\n\n +++ configuration file: "
510	printf "\n $config_file"
511	printf "\n does not exist"
512	locat=connect; exit
513	fi
514
515
516	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
517	line=""
518	grep "%host_identifier" $config_file > tmp_mrun
519	while read line
520	do
521	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
522	then
523	HOSTNAME=`echo $line \| cut -d" " -s -f2`
524	host_identifier=`echo $line \| cut -d" " -s -f3`
525	if [[ $localhost_realname = $HOSTNAME ]]
526	then
527	localhost=$host_identifier
528	break
529	fi
530	fi
531	done < tmp_mrun
532
533	if [[ "$localhost" = "" ]]
534	then
535	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
536	printf "\n for local host \"$localhost_realname\"."
537	printf "\n Please add line"
538	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
539	printf "\n to the configuration file."
540	locat=localhost; exit
541	fi
542
543
544	# HOSTSPEZIFISCHE VARIABLEN SETZEN
545	case $localhost_realname in
546	(r1\|r2\|h01\|b01) archive_system=tivoli;;
547	(cs*) archive_system=ut;;
548	(fimm.bccs.uib.no) fimm=true;;
549	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
550	(scirocco) scirocco=true;;
551	esac
552
553
554
555	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
556	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
557	[[ "$afname" = "" ]] && afname=$fname
558
559
560	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
561	if [[ "$run_mode" != "" ]]
562	then
563	input_list="$input_list $run_mode"
564	output_list="$output_list $run_mode"
565	fi
566
567
568	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
569	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
570	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
571	# STARTET)
572	if [[ "$fromhost" = "" ]]
573	then
574	fromhost=$localhost
575	fi
576
577
578	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
579	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
580	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
581	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
582	if [[ -n $host && "$host" != $localhost ]]
583	then
584	do_batch=true
585	do_remote=true
586	case $host in
587	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
588	(*) printf "\n"
589	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
590	printf "\n is not available"
591	locat=nqs; (( iec = 0 )); exit;;
592	esac
593	else
594	host=$localhost
595	fi
596
597
598	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
599	if [[ -n $additional_conditions ]]
600	then
601	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
602	cond1=`echo $additional_conditions \| cut -d" " -f1`
603	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
604	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
605	if [[ -n $dummy ]]
606	then
607	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
608	locat=options; exit
609	fi
610	block=_$cond1
611	[[ -n $cond2 ]] && block=${block}_$cond2
612	fi
613
614
615	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
616	if [[ $run_coupled_model = true ]]
617	then
618
619	if [[ -n $coupled_dist ]]
620	then
621
622	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
623	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
624
625	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
626	then
627
628	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
629	printf "\n PEs (total) : $numprocs"
630	printf "\n PEs (atmosphere): $numprocs_atmos"
631	printf "\n PEs (ocean) : $numprocs_ocean"
632	locat=coupling; exit
633
634	fi
635
636	else
637
638	(( numprocs_ocean = $numprocs / 2 ))
639	(( numprocs_atmos = $numprocs / 2 ))
640
641	fi
642	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
643
644	# GET coupled_mode FROM THE CONFIG FILE
645	line=""
646	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
647	while read line
648	do
649	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
650	then
651	coupled_mode="mpi2"
652	fi
653	done < tmp_mrun
654
655	fi
656
657
658	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
659	# ARCHIVIERUNG FEHLGESCHLAGEN IST
660	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
661	then
662	if [[ $ignore_archive_error = false ]]
663	then
664	printf "\n +++ data archiving of previous run failed"
665	printf "\n see directory \~/job_queue on remote machine"
666	locat=archive; exit
667	else
668	printf "\n +++ warning: data archiving in a previous run failed"
669	printf "\n MRUN continues, trying to get backup copy"
670	fi
671	fi
672
673
674	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
675	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
676	mrun_memory=$memory
677	mrun_group_number=$group_number
678	mrun_cpumax=$cpumax
679	mrun_numprocs=$numprocs
680
681
682	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
683	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
684	if [[ "$read_from_config" = false ]]
685	then
686
687	[[ $silent = false ]] && printf "\n Reading the configuration file... "
688	while read zeile
689	do
690	[[ $silent = false ]] && printf "."
691
692
693	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
694	# ERSETZEN
695	eval zeile=\"$zeile\"
696
697
698	# INTERPRETATION DER ZEILE
699	if [[ "$(echo $zeile)" = "" ]]
700	then
701	# LEERZEILE, KEINE AKTION
702	continue
703
704	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
705	then
706
707	# ZEILE IST KOMMENTARZEILE
708	true
709
710	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
711	then
712
713	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
714	zeile=$(echo $zeile \| cut -c2-)
715	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
716	var=`echo $zeile \| cut -d" " -f1`
717	value=`echo $zeile \| cut -d" " -s -f2`
718	for_host=`echo $zeile \| cut -d" " -s -f3`
719	for_cond1=`echo $zeile \| cut -d" " -s -f4`
720	for_cond2=`echo $zeile \| cut -d" " -s -f5`
721
722	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
723	then
724
725	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
726	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
727	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
728
729
730	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
731	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
732	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
733	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
734	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
735	# KONFIGURATIONSDATEI
736	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
737	then
738	eval $var=\$value
739
740	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
741	if [[ $do_trace = true ]]
742	then
743	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
744	fi
745	fi
746
747	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
748	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
749	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
750	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
751	if [[ $var = host ]]
752	then
753	if [[ -n $host && "$host" != $localhost ]]
754	then
755	do_batch=true
756	do_remote=true
757	case $host in
758	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
759	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
760	printf "\n is not available"
761	locat=nqs; exit;;
762	esac
763	else
764	host=$localhost
765	fi
766	fi
767
768	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
769	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
770	# DEN PROGRAMMEN BENOETIGT WERDEN
771	export $var
772	fi
773
774
775
776
777	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
778	then
779
780	# ZEILE DEFINIERT ERROR-KOMMANDO
781	(( iec = iec + 1 ))
782	zeile=$(echo $zeile \| cut -c4-)
783	err_command[$iec]="$zeile"
784
785	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
786	then
787
788	# ZEILE DEFINIERT INPUT-KOMMANDO
789	(( iic = iic + 1 ))
790	zeile=$(echo $zeile \| cut -c4-)
791	in_command[$iic]="$zeile"
792
793	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
794	then
795
796	# ZEILE DEFINIERT OUTPUT-KOMMANDO
797	(( ioc = ioc + 1 ))
798	zeile=$(echo $zeile \| cut -c4-)
799	out_command[$ioc]="$zeile"
800
801	else
802
803	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
804	# s2a: in/out - Feld
805	# s2b: loc - Feld (optional)
806	# s2c: tr/ar - Feld (optional)
807	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
808	s1=`echo $zeile \| cut -d" " -f1`
809	s2=`echo $zeile \| cut -d" " -s -f2`
810	s2a=$(echo $s2 \| cut -d":" -f1)
811	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
812	then
813	s2b=""
814	s2c=""
815	else
816	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
817	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
818	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
819	fi
820	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
821	s3=`echo $zeile \| cut -d" " -f3`
822	s4=`echo $zeile \| cut -d" " -s -f4`
823	s5=`echo $zeile \| cut -d" " -s -f5`
824	s6=`echo $zeile \| cut -d" " -s -f6`
825
826
827	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
828	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
829	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
830	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
831	# HANDEN SEIN MUSS (D.H. s2b = loc)
832	IFSALT="$IFS"; IFS="$IFS:"
833	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
834	then
835	found=false
836	for actual in $input_list
837	do
838	for formal in $s3
839	do
840	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
841	done
842	done
843	if [[ $found = true ]]
844	then
845	(( iin = iin + 1 ))
846	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
847	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
848	extin[$iin]=$s6
849	fi
850	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
851	then
852	found=false
853	for actual in $output_list
854	do
855	for formal in $s3
856	do
857	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
858	done
859	done
860	if [[ $found = true ]]
861	then
862	(( iout = iout + 1 ))
863	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
864	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
865	fi
866	elif [[ "$s2a" != in && "$s2a" != out ]]
867	then
868	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
869	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
870	locat=connect; exit
871	fi
872	IFS="$IFSALT"
873	fi
874	done < $config_file
875
876	else
877
878
879	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
880	[[ $silent = false ]] && printf "..."
881	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
882	export interpreted_config_file=.icf.$RANDOM
883
884
885
886	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
887	# VERFUEGUNG STELLEN
888	cat > .mrun_environment << %%END%%
889	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
890	config_file = '$config_file', do_remote = '$do_remote',
891	do_trace = '$do_trace', host = '$host',
892	input_list = '$input_list', icf = '$interpreted_config_file',
893	localhost = '$localhost', output_list = '$output_list' /
894
895	%%END%%
896
897	if [[ $localhost_realname = "sx-fep" ]]
898	then
899	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
900	else
901
902	if [[ "$host" != $localhost ]]
903	then
904
905	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
906	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
907	if [[ $? != 0 ]]
908	then
909	printf "\n\n +++ no interpret_config found"
910	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
911	locat=interpret_config; exit
912	fi
913	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
914	$interpret_config_executable
915
916	else
917
918	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
919	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
920	then
921	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
922	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
923	locat=interpret_config; exit
924	else
925	interpret_config${block}.x
926	fi
927
928	fi
929	fi
930	rm .mrun_environment
931
932
933	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
934	chmod u+x $interpreted_config_file
935	export PATH=$PATH:.
936	. $interpreted_config_file
937	rm $interpreted_config_file
938
939	fi
940
941
942	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
943	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
944	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
945	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
946	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
947	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
948	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
949
950
951	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
952	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
953	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
954	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
955	if [[ "$SOURCES_COMPLETE" = "" ]]
956	then
957
958	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
959	# VEREINBART WURDE
960	source_path=""
961	line=""
962	grep "%source_path" $config_file > tmp_mrun
963	while read line
964	do
965	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
966	then
967	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
968	then
969	global_source_path=`echo $line \| cut -d" " -f2`
970	fi
971	fi
972	done < tmp_mrun
973
974	line=""
975	found=false
976	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
977	while read line
978	do
979	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
980	then
981	if [[ $found = true ]]
982	then
983	printf "\n\n +++ more than one source path found in configuration file"
984	printf "\n for local host \"$localhost\" "
985	locat=source_path; exit
986	fi
987	source_path=`echo $line \| cut -d" " -f2`
988	found=true
989	fi
990	done < tmp_mrun
991	rm tmp_mrun
992
993	if [[ "$source_path" = "" ]]
994	then
995	if [[ "$global_source_path" != "" ]]
996	then
997	source_path=$global_source_path
998	else
999	printf "\n\n +++ no source path found in configuration file"
1000	printf "\n for local host \"$localhost\" "
1001	locat=source_path; exit
1002	fi
1003	fi
1004	eval source_path=$source_path
1005
1006	if [[ ! -d $source_path ]]
1007	then
1008	printf "\n\n +++ source path \"$source_path\" on local host"
1009	printf "\n \"$localhost\" does not exist"
1010	locat=source_path; exit
1011	fi
1012
1013	fi
1014
1015
1016	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1017	# DURCH OPTION -G MITGETEILT)
1018	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1019	then
1020	global_revision=`svnversion $source_path 2>/dev/null`
1021	global_revision="Rev: $global_revision"
1022	fi
1023
1024
1025	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1026	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1027	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1028	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1029	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1030	if [[ -n $host && "$host" != $localhost ]]
1031	then
1032	do_batch=true
1033	do_remote=true
1034	case $host in
1035	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1036	(*) printf "\n"
1037	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1038	printf "\n is not available"
1039	locat=nqs; (( iec = 0 )); exit;;
1040	esac
1041	else
1042	host=$localhost
1043	fi
1044
1045
1046	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1047	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1048	then
1049
1050	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1051	if [[ ! -n $numprocs ]]
1052	then
1053	printf "\n"
1054	printf "\n +++ option \"-K parallel\" requires additional specification"
1055	printf "\n of the number of processors to be used by"
1056	printf "\n mrun-option \"-X\" or by environment-variable"
1057	printf "\n \"numprocs\" in the configuration file"
1058	locat=numprocs; (( iec = 0 )); exit
1059	fi
1060
1061	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1062	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1063	# GESAMTPROZESSORANZAHL IST
1064	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1065	then
1066	printf "\n"
1067	printf "\n +++ option \"-T\" (tasks per node) is missing"
1068	printf "\n set -T option or define tasks_per_node in the config file"
1069	locat=tasks_per_node; (( iec = 0 )); exit
1070	fi
1071	if [[ $host != lcflow && $host != lcxt5m ]]
1072	then
1073	(( ival = $tasks_per_node ))
1074	(( pes = numprocs ))
1075	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1076	# then
1077	# (( pes = pes - 1 ))
1078	# fi
1079	(( ii = pes / ival ))
1080	if (( pes - ii * ival > 0 ))
1081	then
1082	printf "\n"
1083	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1084	printf "\n divisor of the total number of processors (option \"-X\")"
1085	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1086	locat=tasks_per_node; (( iec = 0 )); exit
1087	fi
1088	fi
1089
1090
1091	# IBMY HAT NUR EINEN KNOTEN
1092	if [[ $host = ibmy ]]
1093	then
1094	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1095	then
1096	printf "\n"
1097	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1098	printf "\n total number of processors (option \"-X\")"
1099	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1100	locat=tasks_per_node; (( iec = 0 )); exit
1101	fi
1102	fi
1103
1104
1105	# SETTINGS FOR SUBJOB-COMMAND
1106	OOPT="-O $threads_per_task"
1107
1108	# GESAMTZAHL DER KNOTEN BESTIMMEN
1109	if [[ "$tasks_per_node" != "" ]]
1110	then
1111	TOPT="-T $tasks_per_node"
1112	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1113	fi
1114
1115	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1116	# SETZEN
1117	if [[ $node_usage = default ]]
1118	then
1119	if [[ $host = ibms ]]
1120	then
1121	node_usage=shared
1122	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1123	then
1124	node_usage=singlejob
1125	else
1126	node_usage=not_shared
1127	fi
1128	fi
1129
1130	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1131	then
1132	printf "\n"
1133	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1134	printf "\n \"shared\" or \"not_shared\""
1135	locat=tasks_per_node; (( iec = 0 )); exit
1136	fi
1137
1138	fi
1139
1140	# PRUEFEN, OB HOSTFILE EXISTIERT
1141	if [[ -n $hostfile ]]
1142	then
1143	if [[ ! -f $hostfile ]]
1144	then
1145	printf "\n"
1146	printf "\n +++ hostfile \"$hostfile\" does not exist"
1147	locat=hostfile; exit
1148	fi
1149	fi
1150
1151	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1152	if [[ $host = ibmy && $do_remote = false ]]
1153	then
1154	if [[ ! -f $HOME/.rhosts ]]
1155	then
1156	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1157	printf "\n\n *** file:"
1158	printf "\n $HOME/.rhosts"
1159	printf "\n was created\n"
1160	fi
1161	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1162	then
1163	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1164	printf "\n\n *** file:"
1165	printf "\n $HOME/.rhosts"
1166	printf "\n was extended by the name of the current host\n"
1167	fi
1168	fi
1169
1170
1171	# Set default value for the maximum number of parallel io streams
1172	if [[ "$maximum_parallel_io_streams" = "" ]]
1173	then
1174	maximum_parallel_io_streams=$numprocs
1175	fi
1176
1177
1178	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1179	if [[ "$scp_port" != "" ]]
1180	then
1181	PORTOPT="-P $scp_port"
1182	SSH_PORTOPT="-p $scp_port"
1183	fi
1184
1185
1186	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1187	if [[ $queue = none ]]
1188	then
1189	case $host in
1190	(ibmh) queue=cluster;;
1191	(ibmkisti) queue=class.32plus;;
1192	(ibmy) queue=parallel;;
1193	(lckiaps) queue=normal;;
1194	(lckyoto) queue=ph;;
1195	(lckyuh) queue=fx-single;;
1196	(lckyut) queue=cx-single;;
1197	(lcsgib) queue=testq;;
1198	(lcsgih) queue=testq;;
1199	(lctit) queue=S;;
1200	(nech) queue=none;;
1201	(necriam) queue=SP;;
1202	(unics) queue=unics;;
1203	esac
1204	fi
1205
1206
1207	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1208	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1209	# ERMITTELN
1210	(( i = 0 ))
1211	while (( i < iin ))
1212	do
1213	(( i = i + 1 ))
1214	(( maxcycle = 0 ))
1215
1216	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1217	if [[ "${actionin[$i]}" = di ]]
1218	then
1219	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1220	# REM-MASCHINE AUSWERTEN
1221	eval filename=${pathin[$i]}/${endin[$i]}
1222	else
1223	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1224	# REM-MASCHINE AUSWERTEN
1225	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1226	fi
1227	eval pathname=${pathin[$i]}
1228
1229	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1230	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1231	then
1232	filename_input=$filename
1233	fi
1234
1235	# PRUEFEN AUF VORHANDENSEIN
1236	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1237	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1238	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1239	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1240	then
1241	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1242	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1243	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1244	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1245	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1246	if [[ "${transin[$i]}" != "locopt" ]]
1247	then
1248	printf "\n\n +++ INPUT-file: "
1249	if [[ "${extin[$i]}" = "" ]]
1250	then
1251	printf "\n $filename"
1252	else
1253	printf "\n $filename.${extin[$i]}"
1254	fi
1255	printf "\n does not exist\n"
1256	locat=input; exit
1257	else
1258	transin[$i]="unavailable"
1259	fi
1260	else
1261
1262	# ZYKLUSNUMMER FESTSTELLEN
1263	ls -1 -d $filename > filelist 2>/dev/null
1264	ls -1 -d $filename.* >> filelist 2>/dev/null
1265	while read zeile
1266	do
1267	cycle=$(echo $zeile \| cut -f2 -d".")
1268	if [[ "$cycle" = "$zeile" ]]
1269	then
1270	(( icycle = 0 ))
1271	elif [[ "$cycle" = "${extin[$i]}" ]]
1272	then
1273	(( icycle = 0 ))
1274	else
1275	(( icycle = $cycle ))
1276	fi
1277	if (( icycle > maxcycle ))
1278	then
1279	(( maxcycle = icycle ))
1280	file_to_be_used=$zeile
1281	fi
1282	done <filelist
1283	rm filelist
1284
1285	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1286	if (( maxcycle > 0 ))
1287	then
1288	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1289	then
1290	filename=${filename}.$maxcycle.${extin[$i]}
1291	else
1292	filename=${filename}.$maxcycle
1293	fi
1294	else
1295	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1296	then
1297	filename=${filename}.${extin[$i]}
1298	fi
1299	fi
1300
1301	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1302	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1303	absnamein[$i]=$filename
1304	if (( maxcycle > 0 ))
1305	then
1306	if [[ "${actionin[$i]}" = di ]]
1307	then
1308	frelin[$i]=${endin[$i]}.$maxcycle
1309	else
1310	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1311	fi
1312	else
1313	if [[ "${actionin[$i]}" = di ]]
1314	then
1315	frelin[$i]=${endin[$i]}
1316	else
1317	frelin[$i]=${afname}${endin[$i]}
1318	fi
1319	fi
1320
1321	fi
1322	done
1323
1324	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1325	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1326	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1327	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1328	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1329	(( i = 0 ))
1330	while (( i < iout ))
1331	do
1332	(( i = i + 1 ))
1333	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1334	then
1335	if [[ "${actionout[$i]}" = tr ]]
1336	then
1337	actionout[$i]=""
1338	elif [[ "${actionout[$i]}" = trpe ]]
1339	then
1340	actionout[$i]=pe
1341	elif [[ "${actionout[$i]}" = tra ]]
1342	then
1343	actionout[$i]=a
1344	fi
1345	(( maxcycle = 0 ))
1346	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1347	eval catalogname=${pathout[$i]}
1348	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1349	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1350	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1351	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1352	then
1353
1354	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1355	if cat /dev/null > $filename
1356	then
1357	rm $filename
1358	else
1359
1360	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1361	if [[ ! -d $catalogname ]]
1362	then
1363	if mkdir -p $catalogname
1364	then
1365	printf "\n\n *** directory:"
1366	printf "\n $catalogname"
1367	printf "\n was created\n"
1368	else
1369	printf "\n\n +++ OUTPUT-file:"
1370	printf "\n $filename"
1371	printf "\n cannot be created, because directory does not exist"
1372	printf "\n and cannot be created either"
1373	printf "\n"
1374	locat=output ; exit
1375	fi 2>/dev/null
1376	else
1377	printf "\n\n +++ OUTPUT-file:"
1378	printf "\n $filename"
1379	printf "\n cannot be created, although directory exists"
1380	printf "\n"
1381	locat=output ; exit
1382	fi
1383	fi 2>/dev/null
1384	else
1385
1386	# ZYKLUSNUMMER FESTSTELLEN
1387	ls -1 -d $filename > filelist 2>/dev/null
1388	ls -1 -d $filename.* >> filelist 2>/dev/null
1389	while read zeile
1390	do
1391	cycle=$(echo $zeile \| cut -f2 -d".")
1392	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1393	then
1394	(( icycle = 1 ))
1395	else
1396	(( icycle = $cycle + 1 ))
1397	fi
1398	if (( icycle > maxcycle ))
1399	then
1400	(( maxcycle = icycle ))
1401	fi
1402	done <filelist
1403	rm filelist
1404	fi
1405
1406	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1407	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1408	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1409	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1410	if [[ "${actionout[$i]}" != a ]]
1411	then
1412	if (( maxcycle > 0 ))
1413	then
1414	filename=${filename}.$maxcycle
1415	if cat /dev/null > $filename
1416	then
1417	rm $filename
1418	else
1419	printf "\n +++ OUTPUT-file:"
1420	printf "\n $filename"
1421	printf "\n cannot be created"
1422	locat=output ; exit
1423	fi
1424	fi
1425	else
1426	(( maxcycle = maxcycle - 1 ))
1427	if (( maxcycle > 0 ))
1428	then
1429	filename=${filename}.$maxcycle
1430	fi
1431	fi
1432
1433	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1434	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1435	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1436	pathout[$i]=$filename
1437	if (( maxcycle > 0 ))
1438	then
1439	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1440	else
1441	frelout[$i]=${fname}${endout[$i]}
1442	fi
1443
1444	fi
1445	done
1446
1447
1448	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1449	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1450	then
1451	if [[ "$dvr_inc" = "" ]]
1452	then
1453	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1454	printf "\n This is required for the dvrp_graphics package.\n"
1455	locat=dvr; exit
1456	fi
1457	if [[ "$dvr_lib" = "" ]]
1458	then
1459	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1460	printf "\n This is required for the dvrp_graphics package.\n"
1461	locat=dvr; exit
1462	fi
1463	fi
1464
1465
1466	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1467	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1468	# UEBERSETZT ZU WERDEN)
1469	if [[ "$mainprog" = "" && "$executable" = "" ]]
1470	then
1471	printf "\n +++ neither main program nor executable defined"
1472	locat=source; exit
1473	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1474	then
1475	printf "\n +++ main program as well as executable defined"
1476	locat=source; exit
1477	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1478	then
1479	do_compile=false
1480	fi
1481
1482
1483	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1484	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1485	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1486	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1487	then
1488	rm -rf SOURCES_FOR_RUN_$fname
1489	mkdir SOURCES_FOR_RUN_$fname
1490	fi
1491
1492
1493	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1494	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1495	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1496	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1497	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1498	then
1499
1500	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1501
1502	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1503	then
1504
1505	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1506	source_list=""
1507	cd $source_path
1508
1509
1510	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1511	if [[ ! -d .svn ]]
1512	then
1513	printf "\n\n +++ source directory"
1514	printf "\n \"$source_path\" "
1515	printf "\n is not under control of \"subversion\"."
1516	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1517	fi
1518
1519
1520	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1521	Filenames=""
1522	svn status > tmp_mrun
1523	while read line
1524	do
1525	firstc=`echo $line \| cut -c1`
1526	if [[ $firstc = M \|\| $firstc = "?" ]]
1527	then
1528	Name=`echo "$line" \| cut -c8-`
1529	extension=`echo $Name \| cut -d. -f2`
1530	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1531	then
1532	Filenames="$Filenames "$Name
1533	fi
1534	fi
1535	done < tmp_mrun
1536
1537
1538	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1539	for dateiname in $Filenames
1540	do
1541	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1542	source_list=$source_list"$dateiname "
1543	done
1544
1545	cd - > /dev/null
1546
1547
1548	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1549	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1550	# VORHANDEN
1551	elif [[ "$source_list" != "" && $restart_run != true ]]
1552	then
1553
1554	cd $source_path
1555
1556	for filename in $source_list
1557	do
1558
1559	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1560	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1561	then
1562	printf "\n +++ source code file: $filename"
1563	printf "\n must not contain (\"/\") "
1564	locat=source; exit
1565	fi
1566
1567	if [[ ! -f $filename ]]
1568	then
1569	printf "\n +++ source code file: $filename"
1570	printf "\n does not exist"
1571	locat=source; exit
1572	else
1573	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1574	fi
1575
1576	done
1577
1578	cd - > /dev/null
1579
1580	fi
1581
1582
1583	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1584	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1585	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1586	if [[ $restart_run != true ]]
1587	then
1588
1589	if [[ ! -f "$source_path/$mainprog" ]]
1590	then
1591	printf "\n\n +++ main program: $mainprog"
1592	printf "\n does not exist in source directory"
1593	printf "\n \"$source_path\"\n"
1594	locat=source; exit
1595	else
1596	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1597	then
1598	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1599	source_list=${mainprog}" $source_list"
1600	fi
1601	fi
1602	fi
1603
1604
1605	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1606	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1607	if [[ "$restart_run" != true ]]
1608	then
1609	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1610	if [[ ! -f $makefile ]]
1611	then
1612	printf "\n +++ file \"$makefile\" does not exist"
1613	locat=make; exit
1614	else
1615	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1616	fi
1617	fi
1618
1619
1620	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1621	if [[ $restart_run != true && "$add_source_path" != "" ]]
1622	then
1623
1624	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1625	if [[ ! -d $add_source_path ]]
1626	then
1627	printf "\n\n +++ WARNING: additional source code directory"
1628	printf "\n \"$add_source_path\" "
1629	printf "\n does not exist or is not a directory."
1630	printf "\n No source code will be used from this directory!\n"
1631	add_source_path=""
1632	if [[ $silent == false ]]
1633	then
1634	sleep 3
1635	fi
1636	else
1637
1638	cd $add_source_path
1639	found=false
1640
1641	Names=$(ls -1 *.f90 2>&1)
1642	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1643	Names=$(ls -1 *.F90 2>&1)
1644	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1645	Names=$(ls -1 *.F 2>&1)
1646	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1647	Names=$(ls -1 *.f 2>&1)
1648	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1649	Names=$(ls -1 *.c 2>&1)
1650	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1651
1652	cd - > /dev/null
1653	cd SOURCES_FOR_RUN_$fname
1654
1655	# COPY MAKEFILE IF EXISTING
1656	if [[ -f $add_source_path/Makefile ]]
1657	then
1658	printf "\n\n *** user Makefile from directory"
1659	printf "\n \"$add_source_path\" is used \n"
1660	if [[ $silent == false ]]
1661	then
1662	sleep 1
1663	fi
1664	cp $add_source_path/Makefile .
1665	fi
1666
1667	for dateiname in $AddFilenames
1668	do
1669	if [[ -f $dateiname ]]
1670	then
1671	printf "\n +++ source code file \"$dateiname\" found in additional"
1672	printf "\n source code directory \"$add_source_path\" "
1673	printf "\n but was also given with option \"-s\" which means that it should be taken"
1674	printf "\n from directory \"$source_path\"."
1675	locat=source; exit
1676	fi
1677
1678	cp $add_source_path/$dateiname .
1679	source_list="$source_list $dateiname"
1680
1681	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1682	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1683	then
1684	printf "\n\n +++ user file \"$dateiname\" "
1685	printf "\n is not listed in Makefile \n"
1686	locat=source; exit
1687	else
1688
1689	# Default User-Interface von der Liste entfernen, falls Datei
1690	# ein User-Interface enthaelt
1691	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1692	# then
1693	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1694	# then
1695	# rm -rf user_interface.f90
1696	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1697	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1698	# printf "\n since a user-interface is found in file"
1699	# printf "\n \"$add_source_path/$dateiname\" \n"
1700	# sleep 3
1701	# else
1702	if [[ $found = false ]]
1703	then
1704	found=true
1705	printf "\n\n *** following user file(s) added to the"
1706	printf " files to be translated:\n "
1707	fi
1708	printf "$dateiname "
1709	if [[ $silent == false ]]
1710	then
1711	sleep 0.5
1712	fi
1713
1714	fi
1715	done
1716	[[ $found = true ]] && printf "\n"
1717	cd - > /dev/null
1718	fi
1719	fi
1720
1721
1722	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1723	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1724	if [[ $restart_run != true && -n $package_list ]]
1725	then
1726
1727	cd $source_path
1728
1729	for package in $package_list
1730	do
1731
1732	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1733
1734	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1735	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1736	# LIEFERT
1737	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1738
1739
1740	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1741	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1742	for source_list_name in $package_source_list
1743	do
1744	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1745	then
1746
1747	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1748	ending=`echo $source_list_name \| cut -f2 -d.`
1749	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1750	then
1751	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1752	source_list="$source_list $source_list_name"
1753	fi
1754	fi
1755	done
1756	done
1757
1758	cd - > /dev/null
1759	fi
1760
1761
1762	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1763	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1764	# if [[ "$restart_run" != true ]]
1765	# then
1766	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1767	# if [[ ! -f $makefile ]]
1768	# then
1769	# printf "\n +++ file \"$makefile\" does not exist"
1770	# locat=make; exit
1771	# else
1772	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1773	# fi
1774	# fi
1775
1776	fi # do_compile=true
1777
1778
1779	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1780	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1781	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1782	then
1783
1784	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1785	# ZUSAMMENSETZEN
1786	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1787	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1788	then
1789	cpp_options="${cpp_options},-D__ibm=__ibm"
1790	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1791	then
1792	cpp_options="$cpp_options -D__nec"
1793	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1794	then
1795	cpp_options="$cpp_options -D__lc"
1796	else
1797	cpp_options="$cpp_options -D__$localhost"
1798	fi
1799
1800	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1801	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1802	then
1803	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1804	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1805	else
1806	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1807	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1808	fi
1809
1810	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1811	if [[ -n $package_list ]]
1812	then
1813	for package in $package_list
1814	do
1815	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1816	then
1817	if [[ $package != "dvrp_graphics+1PE" ]]
1818	then
1819	cpp_options="${cpp_options},-D__$package=__$package"
1820	else
1821	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1822	export use_seperate_pe_for_dvrp_output=true
1823	fi
1824	else
1825	if [[ $package != "dvrp_graphics+1PE" ]]
1826	then
1827	cpp_options="$cpp_options -D__$package"
1828	else
1829	cpp_options="$cpp_options -D__dvrp_graphics"
1830	export use_seperate_pe_for_dvrp_output=true
1831	fi
1832	fi
1833	done
1834	fi
1835
1836	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1837	if [[ -n $cpp_opts ]]
1838	then
1839	for popts in $cpp_opts
1840	do
1841	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1842	then
1843	cpp_options="${cpp_options},-D__$popts=__$popts"
1844	else
1845	cpp_options="$cpp_options -D__$popts"
1846	fi
1847	done
1848	fi
1849
1850	else
1851
1852
1853	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1854	if [[ $do_remote = false ]]
1855	then
1856	if [[ ! -f $executable ]]
1857	then
1858	printf "\n +++ executable file: $executable"
1859	printf "\n does not exist"
1860	locat=executable; exit
1861	fi
1862	fi
1863	fi
1864
1865
1866	# JOBMODUS FESTSTELLEN
1867	if [[ "$ENVIRONMENT" = BATCH ]]
1868	then
1869	jobmo=BATCH
1870	else
1871	jobmo=INTERACTIVE
1872	fi
1873
1874
1875	# no interactive runs on lctit
1876	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1877	then
1878	printf "\n +++ no interactive runs allowed on host \"$host\" "
1879	printf "\n please submit batch job using mrun option \"-b\" \n"
1880	locat=normal; exit
1881	fi
1882
1883
1884	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1885	# DURCH BENUTZER ANDERWEITIG VEREINBART
1886	if [[ "$compiler_name" = "" ]]
1887	then
1888
1889	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1890	locat=compiler_name; exit
1891
1892	fi
1893
1894
1895	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1896	[[ $localhost = necriam ]] && compiler_name=mpif90
1897
1898
1899
1900	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1901	kennung=$RANDOM
1902	if [[ "$tmp_user_catalog" = "" ]]
1903	then
1904	if [[ $localhost = ibmh ]]
1905	then
1906	tmp_user_catalog=$SCRATCH
1907	elif [[ $localhost = nech ]]
1908	then
1909	tmp_user_catalog=$WRKSHR
1910	else
1911	tmp_user_catalog=/tmp
1912	fi
1913	fi
1914	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1915
1916
1917	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1918	# BESTIMMEN
1919	if [[ "$tmp_data_catalog" = "" ]]
1920	then
1921	if [[ $localhost = nech ]]
1922	then
1923	tmp_data_catalog=$WRKSHR/mrun_restart_data
1924	else
1925	tmp_data_catalog=/tmp/mrun_restart_data
1926	fi
1927	fi
1928
1929
1930	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1931	# ERSETZEN
1932	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1933	then
1934	eval fopts=\"$fopts\"
1935	eval lopts=\"$lopts\"
1936	fi
1937
1938
1939
1940	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1941	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1942	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1943	ROPTS="$ropts"
1944	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1945	# then
1946	XOPT="-X $numprocs"
1947	# fi
1948
1949
1950
1951	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1952	# GRAMM BENOETIGT
1953	done=false
1954	while [[ $done = false ]]
1955	do
1956	cputime=$cpumax
1957	if (( $cputime == 0 ))
1958	then
1959	if [[ $do_batch = true ]]
1960	then
1961	printf "\n +++ cpu-time is undefined"
1962	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1963	printf "\n >>> "
1964	read cputime 1>/dev/null 2>&1
1965	else
1966	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1967	fi
1968	else
1969	done=true
1970	fi
1971	cpumax=$cputime
1972	done
1973
1974	(( minuten = cputime / 60 ))
1975	(( sekunden = cputime - minuten * 60 ))
1976
1977
1978	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1979	if [[ $do_batch = true ]]
1980	then
1981	done=false
1982	while [[ $done = false ]]
1983	do
1984	if (( memory == 0 ))
1985	then
1986	printf "\n +++ memory demand is undefined"
1987	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1988	printf "\n >>> "
1989	read memory 1>/dev/null 2>&1
1990	else
1991	done=true
1992	fi
1993	done
1994	fi
1995
1996
1997	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1998	if [[ $do_remote = true && -z $remote_username ]]
1999	then
2000	while [[ -z $remote_username ]]
2001	do
2002	printf "\n +++ username on remote host \"$host\" is undefined"
2003	printf "\n >>> Please type username:"
2004	printf "\n >>> "
2005	read remote_username
2006	done
2007	mc="$mc -u$remote_username"
2008	fi
2009
2010	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2011	if [[ "$login_init_cmd" != "" ]]
2012	then
2013	export init_cmds="${login_init_cmd};"
2014	fi
2015
2016
2017	# set module load command and export for subjob
2018	if [[ "$modules" != "" ]]
2019	then
2020	if [[ $host = lctit ]]
2021	then
2022	export module_calls=". $modules"
2023	else
2024	export module_calls="module load ${modules};"
2025	fi
2026	fi
2027
2028	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2029	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2030	then
2031	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2032	then
2033	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2034	fi
2035	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2036	# then
2037	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2038	# echo "*** module_calls = $module_calls"
2039	# fi
2040	fi
2041
2042
2043	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2044	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2045	then
2046	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2047	then
2048	mpilib=mpt
2049	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2050	then
2051	mpilib=mvapich
2052	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2053	then
2054	mpilib=impi
2055	fi
2056	fi
2057
2058
2059
2060	###########################################################################
2061	# HEADER-AUSGABE
2062	###########################################################################
2063
2064
2065	calltime=$(date)
2066	printf "\n"
2067	# [[ $silent = false ]] && clear
2068	printf "#------------------------------------------------------------------------# \n"
2069	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2070	printf "\| \| \n"
2071	spalte1="called on:"; spalte2=$localhost_realname
2072	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2073	if [[ $local_compile = false ]]
2074	then
2075	if [[ $do_remote = true ]]
2076	then
2077	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2078	else
2079	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2080	fi
2081	else
2082	spalte1="compiling test only!"; spalte2=""
2083	fi
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	if [[ -n $numprocs ]]
2086	then
2087	if [[ $run_coupled_model = false ]]
2088	then
2089	spalte1="number of PEs:"; spalte2=$numprocs
2090	else
2091	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2092	fi
2093	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2094	fi
2095	if [[ -n $tasks_per_node ]]
2096	then
2097	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2098	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2099	fi
2100	if [[ $maximum_parallel_io_streams != $numprocs ]]
2101	then
2102	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	fi
2105	if [[ $use_openmp = true ]]
2106	then
2107	spalte1="threads per task:"; spalte2="$threads_per_task"
2108	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2109	fi
2110	printf "\| \| \n"
2111	if [[ $do_compile = true ]]
2112	then
2113	if [[ "$mopts" != "" ]]
2114	then
2115	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2116	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2117	zeile=$(echo "$mopts" \| cut -c46-)
2118	while [[ "$zeile" != "" ]]
2119	do
2120	spalte1=""
2121	spalte2=$(echo "$zeile" \| cut -c-45)
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	zeile=$(echo "$zeile" \| cut -c46-)
2124	done
2125	fi
2126
2127	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	zeile=$(echo "$cpp_options" \| cut -c46-)
2130	while [[ "$zeile" != "" ]]
2131	do
2132	spalte1=""
2133	spalte2=$(echo "$zeile" \| cut -c-45)
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	zeile=$(echo "$zeile" \| cut -c46-)
2136	done
2137
2138	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2140	zeile=$(echo "$fopts" \| cut -c46-)
2141	while [[ "$zeile" != "" ]]
2142	do
2143	spalte1=""
2144	spalte2=$(echo "$zeile" \| cut -c-45)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	zeile=$(echo "$zeile" \| cut -c46-)
2147	done
2148
2149	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	zeile=$(echo "$lopts" \| cut -c46-)
2152	while [[ "$zeile" != "" ]]
2153	do
2154	spalte1=""
2155	spalte2=$(echo "$zeile" \| cut -c-45)
2156	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2157	zeile=$(echo "$zeile" \| cut -c46-)
2158	done
2159
2160	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	zeile=$(echo "$modules" \| cut -c46-)
2163	while [[ "$zeile" != "" ]]
2164	do
2165	spalte1=""
2166	spalte2=$(echo "$zeile" \| cut -c-45)
2167	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2168	zeile=$(echo "$zeile" \| cut -c46-)
2169	done
2170
2171	spalte1="main program:"; spalte2=$mainprog
2172	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2173	else
2174	spalte1=executable:; spalte2=$executable
2175	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2176	fi
2177	printf "\| \| \n"
2178	spalte1="base name of files:"; spalte2=$fname
2179	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2180	if [[ $fname != $afname ]]
2181	then
2182	spalte1="base name of input files:"; spalte2=$afname
2183	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2184	fi
2185	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2186	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2187	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2188	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2189
2190	if [[ "$ocean_file_appendix" = true ]]
2191	then
2192	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2193	fi
2194
2195	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2196	then
2197	spalte1="memory demand / PE":; spalte2="$memory MB"
2198	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2199	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2200	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2201	fi
2202
2203	if [[ $do_compile = true ]]
2204	then
2205	printf "\| \| \n"
2206	printf "\| Files to be compiled: \| \n"
2207	zeile=$source_list
2208	while [[ "$zeile" != "" ]]
2209	do
2210	linestart=$(echo $zeile \| cut -c-70)
2211	printf "\| %-70s \| \n" "$linestart"
2212	zeile=$(echo "$zeile" \| cut -c71-)
2213	done
2214	fi
2215	printf "#------------------------------------------------------------------------#"
2216
2217
2218
2219	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2220	if [[ $do_trace = true ]]
2221	then
2222	(( i = 0 ))
2223	while (( i < iin ))
2224	do
2225	(( i = i + 1 ))
2226	if (( i == 1 ))
2227	then
2228	printf "\n\n >>> INPUT-file assignments:\n"
2229	fi
2230	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2231	done
2232	(( i = 0 ))
2233	while (( i < iout ))
2234	do
2235	(( i = i + 1 ))
2236	if (( i == 1 ))
2237	then
2238	printf "\n\n >>> OUTPUT-file assignments:\n"
2239	fi
2240	printf "\n ${localout[$i]} : ${pathout[$i]}"
2241	done
2242	(( i = 0 ))
2243	while (( i < iic ))
2244	do
2245	(( i = i + 1 ))
2246	if (( i == 1 ))
2247	then
2248	printf "\n\n >>> INPUT-commands:\n"
2249	fi
2250	printf "\n ${in_command[$i]}"
2251	done
2252	(( i = 0 ))
2253	while (( i < ioc ))
2254	do
2255	(( i = i + 1 ))
2256	if (( i == 1 ))
2257	then
2258	printf "\n\n >>> OUTPUT-commands:\n"
2259	fi
2260	printf "\n ${out_command[$i]}"
2261	done
2262	fi
2263
2264
2265	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2266	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2267	then
2268	antwort=dummy
2269	printf "\n\n"
2270	printf " >>> everything o.k. (y/n) ? "
2271	while read antwort
2272	do
2273	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2274	then
2275	printf " >>> everything o.k. (y/n) ? "
2276	else
2277	break
2278	fi
2279	done
2280	if [[ $antwort = n \|\| $antwort = N ]]
2281	then
2282	locat=user_abort; (( iec = 0 )); exit
2283	fi
2284	if [[ $do_batch = true ]]
2285	then
2286	printf " >>> batch-job will be created and submitted"
2287	else
2288	if [[ $local_compile = false ]]
2289	then
2290	printf " >>> MRUN will now continue to execute on this machine"
2291	else
2292	printf " >>> a test compilation will now be carried out on this machine"
2293	fi
2294	fi
2295	fi
2296
2297
2298	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2299	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2300	check_depository="${working_directory}/trunk/UTIL"
2301	check_sources="${working_directory}/tmp_check_namelist_files"
2302	skip_check=false
2303
2304	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2305	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2306	then
2307	skip_check=true
2308	reason="run on remote host or parameter file check has not been compiled."
2309	fi
2310	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2311	then
2312	skip_check=true
2313	reason="parameter file check has not been compiled."
2314	fi
2315
2316	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2317	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2318	then
2319	skip_check=true
2320	reason="serial run."
2321	fi
2322
2323	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2324	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2325	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2326	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2327	if [[ $check_namelist_files == false ]]
2328	then
2329	skip_check=true
2330	reason="-z option set."
2331	fi
2332
2333	if [[ $fromhost != $localhost ]]
2334	then
2335	skip_check=true
2336	reason="submitting host is local host."
2337	fi
2338
2339	if [[ $run_coupled_model == true ]]
2340	then
2341	skip_check=true
2342	reason="coupled run."
2343	fi
2344
2345	if [[ $restart_run == true ]]
2346	then
2347	skip_check=true
2348	reason="restart run."
2349	fi
2350
2351	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2352	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2353	last_char=`echo $filename_input \| cut -c $last_char_int`
2354	if [[ "$last_char" == "f" ]]
2355	then
2356	skip_check=true
2357	reason="restart run."
2358	fi
2359
2360	if [[ $skip_check == false ]]
2361	then
2362	tmp_check=${working_directory}/tmp_check
2363
2364	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2365	# NOT NECESSARILY REQUIRED
2366	line=""
2367	found=false
2368	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2369	while read line1
2370	do
2371	line="$line1"
2372	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2373	then
2374	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2375	found=true
2376	fi
2377	done < $tmp_check
2378
2379	if [[ $found = false ]]
2380	then
2381	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2382	fi
2383
2384	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2385	# NOT NECESSARILY REQUIRED
2386	line=""
2387	found=false
2388	grep "NUDGING_DATA" $config_file > $tmp_check
2389	while read line1
2390	do
2391	line="$line1"
2392	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2393	then
2394	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2395	found=true
2396	fi
2397	done < $tmp_check
2398
2399	if [[ $found = false ]]
2400	then
2401	printf "\n +++ no NUDGING list entry found in the configuration file."
2402	fi
2403
2404	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2405	# NOT NECESSARILY REQUIRED
2406	line=""
2407	found=false
2408	grep "LSF_DATA" $config_file > $tmp_check
2409	while read line1
2410	do
2411	line="$line1"
2412	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2413	then
2414	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2415	found=true
2416	fi
2417	done < $tmp_check
2418
2419	if [[ $found = false ]]
2420	then
2421	printf "\n +++ no LSF list entry found in the configuration file."
2422	fi
2423
2424	rm -rf ${working_directory}/tmp_check
2425
2426	# CHECK IF THE P3DF FILE MUST BE CHECKED
2427	for item in $input_list
2428	do
2429	if [[ "$item" == "restart" ]]
2430	then
2431	check_restart=1
2432	else
2433	check_restart=0
2434	fi
2435	done
2436
2437	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2438	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2439	then
2440	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2441	locat=check_namelist; exit
2442	fi
2443
2444	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2445	if [[ $check_restart == 1 ]]
2446	then
2447
2448	filenamef="${filename_input}f"
2449	if [[ ! -f $filenamef ]]
2450	then
2451	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2452	check_restart=0
2453	answer=dummy
2454	printf "\n\n"
2455
2456	if [[ $silent == false ]]
2457	then
2458	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2459	do
2460	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2461	read answer
2462	done
2463	if [[ $answer = a \|\| $answer = A ]]
2464	then
2465	printf "\n +++ Aborting...."
2466	locat=normal; exit
2467	fi
2468	fi
2469	else
2470	check_restart=1
2471	fi
2472	fi
2473
2474	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2475	mkdir $check_sources
2476	cd $check_sources
2477
2478
2479	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2480	if [[ -d $add_source_path ]]
2481	then
2482	printf "\n\n *** copying files from $check_depository"
2483	cp $check_depository/check_namelist_files.tar ./
2484
2485	printf "\n\n *** untar of makefile and source files in $check_sources"
2486	tar -xf check_namelist_files.tar > /dev/null 2>&1
2487
2488	printf "\n\n *** adding user code."
2489	cp $add_source_path/* ./
2490	touch check_namelist_files.f90
2491
2492	# GET COMPILER OPTIONS AND PERFORM MAKE
2493	printf "\n\n *** compiling code if necessary...\n"
2494
2495	# workaround for batch jobs on local machine (lcxe6)
2496	if [[ $do_batch == true && $do_remote == false ]]
2497	then
2498	eval $init_cmds
2499	fi
2500
2501	# GET CHECK OPTIONS
2502	line=""
2503	found=false
2504
2505	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2506
2507	while read line1
2508	do
2509
2510	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2511	then
2512	line="$line1"
2513	fi
2514
2515	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2516	then
2517	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2518	line="$line "
2519	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2520	found=true
2521	fi
2522
2523	done < $tmp_check
2524	copts_check="$copts_check -D__check -D__parallel"
2525
2526	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2527
2528	# GET MAKE OUTPUT
2529	if [[ $? != 0 ]]
2530	then
2531	printf "\n +++ error during make."
2532	answer=dummy
2533	printf "\n\n"
2534	if [[ $silent == false ]]
2535	then
2536	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2537	do
2538	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2539	read answer
2540	done
2541	if [[ $answer = a \|\| $answer = A ]]
2542	then
2543	printf "\n +++ Aborting..."
2544	rm -rf $check_sources
2545	locat=normal; exit
2546	else
2547	skip_check=true
2548	fi
2549	else
2550	skip_check=true
2551	fi
2552	fi
2553	else
2554	cp $PALM_BIN/check_namelist_files.x ./
2555	fi
2556
2557	cp $filename_input ./PARIN
2558	if [[ $check_restart == 1 ]]
2559	then
2560	cp $filenamef ./PARINF
2561	fi
2562
2563	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2564	then
2565	printf "\n *** adding topography data"
2566	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2567
2568	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2569	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2570	# WHICH REQUIRE SUFFICIENT MEMORY
2571	ulimit -s unlimited
2572	fi
2573
2574	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2575	then
2576	printf "\n *** adding nudging data"
2577	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2578	fi
2579
2580	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2581	then
2582	printf "\n *** adding large scale forcing data"
2583	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2584	fi
2585
2586	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2587	cat > ENVPAR << %%END%%
2588	&envpar run_identifier = '$fname', host = '$host',
2589	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2590	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2591	maximum_cpu_time_allowed = ${cpumax}.,
2592	revision = '$global_revision',
2593	local_dvrserver_running = $local_dvrserver_running /
2594
2595	%%END%%
2596
2597	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2598	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2599	then
2600	printf "\n +++ WARNING: check_namelist_files.x not found."
2601	answer=dummy
2602	printf "\n\n"
2603
2604	if [[ $silent == false ]]
2605	then
2606	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2607	do
2608	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2609	read answer
2610	done
2611	if [[ $answer = a \|\| $answer = A ]]
2612	then
2613	printf "\n +++ Aborting..."
2614	rm -rf $check_sources
2615	locat=normal; exit
2616	else
2617	printf "\n *** skipping parameter file check."
2618	fi
2619	fi
2620
2621	elif [[ $skip_check == false ]]
2622	then
2623	# STARTING THE PARAMETER FILE CHECK
2624	printf "\n\n *** starting parameter file check..."
2625
2626	# CHECKING THE P3D FILE
2627	printf "\n\n (1) checking $filename_input"
2628	echo "$numprocs 0 0" > VARIN
2629	errors=`./check_namelist_files.x < VARIN 2>&1`
2630
2631	check_error=false
2632	if [[ "$errors" == "" ]]
2633	then
2634	printf " --> o.k."
2635	else
2636	printf " --> failed."
2637	check_error=true
2638	printf "\n\n $errors"
2639	fi
2640
2641	# CHECKING THE PD3F FILE IF NECESSARY
2642	if [[ $check_restart == 1 && $check_error == false ]]
2643	then
2644	printf "\n\n (2) checking $filenamef"
2645
2646	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2647	# IN &INIPAR LIST
2648	found=false
2649	cat PARINF \| while read line
2650	do
2651	line=$(echo $line\|sed 's/ //g')
2652	if [[ $line == "&inipar" ]]
2653	then
2654	start_search=true
2655	fi
2656
2657	if [[ $start_search == true ]]
2658	then
2659	if [[ $line == "initializing_actions='read_restart_data'" ]]
2660	then
2661	found=true
2662	break
2663	fi
2664	fi
2665
2666	if [[ $line == "/" ]]
2667	then
2668	start_search=false
2669	fi
2670
2671	done
2672
2673	if [[ $found = false ]]
2674	then
2675	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2676	printf "\n in &inipar list in $fname$p3df_suffix."
2677	rm -rf $check_sources
2678	locat=check_namelist; exit
2679	fi
2680
2681	# READ max_user_pr FROM FILES
2682	if [[ -f parin_for_check ]]
2683	then
2684	read max_pr_user < parin_for_check
2685	else
2686	max_user_pr=0
2687	fi
2688
2689	echo "$numprocs 1 $max_pr_user" > VARIN
2690	errors=`./check_namelist_files.x < VARIN 2>&1`
2691
2692	if [[ "$errors" == "" ]]
2693	then
2694	printf " --> o.k."
2695	else
2696	printf " --> failed."
2697	check_error=true
2698	printf "\n\n $errors"
2699	fi
2700	fi
2701
2702	# REPORT ERRORS AND CONTINUE/EXIT
2703	if [[ $check_error == true ]]
2704	then
2705	printf "\n +++ errors found in the parameter file!\n"
2706	answer=dummy
2707	printf "\n\n"
2708
2709	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2710	do
2711	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2712	read answer
2713	done
2714
2715	if [[ $answer = a \|\| $answer = A ]]
2716	then
2717	printf "\n +++ Aborting..."
2718	rm -rf $check_sources
2719	locat=normal; exit
2720	fi
2721	else
2722	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2723	fi
2724	rm -rf $check_sources
2725	fi
2726	else
2727	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2728	fi
2729
2730	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2731	rm -rf $check_sources
2732	cd $working_directory
2733
2734
2735	# DETERMINE PATH FOR MAKE DEPOSITORY
2736	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2737	then
2738
2739	line=""
2740	grep "%depository_path" $config_file > tmp_mrun
2741	while read line
2742	do
2743	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2744	then
2745	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2746	then
2747	global_depository_path=`echo $line \| cut -d" " -s -f2`
2748	fi
2749	fi
2750	done < tmp_mrun
2751
2752	line=""
2753	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2754	while read line
2755	do
2756	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2757	then
2758	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2759	then
2760	local_depository_path=`echo $line \| cut -d" " -s -f2`
2761	fi
2762	fi
2763	done < tmp_mrun
2764
2765	if [[ "$local_depository_path" = "" ]]
2766	then
2767	if [[ "$global_depository_path" != "" ]]
2768	then
2769	local_depository_path=$global_depository_path
2770	else
2771	printf "\n\n +++ no depository path found in configuration file"
2772	printf "\n for local host \"$localhost\" "
2773	printf "\n please set \"\%depository_path\" in configuration file\n"
2774	locat=config_file; exit
2775	fi
2776	fi
2777	eval local_depository_path=$local_depository_path
2778	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2779	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2780
2781
2782	basename=`echo $mainprog \| cut -f1 -d"."`
2783	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2784	if [[ ! -f $make_depository ]]
2785	then
2786	printf "\n"
2787	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2788	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2789	fi
2790
2791	fi
2792
2793
2794	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2795	# CHENDE AKTIONEN DURCHGEFUEHRT
2796	if [[ $do_batch = false ]]
2797	then
2798
2799
2800	# TEMPORAEREN KATALOG ERZEUGEN
2801	mkdir -p $TEMPDIR
2802	chmod go+rx $TEMPDIR
2803	tmpcreate=true
2804
2805
2806	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2807	# TEMPORAERES VERZEICHNIS KOPIEREN
2808	if [[ $do_compile = true ]]
2809	then
2810
2811	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2812	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2813	if [[ $localhost = nech ]]
2814	then
2815	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2816	if mkdir -p $TEMPDIR_COMPILE
2817	then
2818	printf "\n *** \"$TEMPDIR_COMPILE\" "
2819	printf "\n is generated as temporary directory for cross compiling\n"
2820	else
2821	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2822	printf "\n needed for cross compilation failed"
2823	locat=compile
2824	exit
2825	fi
2826	else
2827	TEMPDIR_COMPILE=$TEMPDIR
2828	fi
2829
2830	cp $make_depository $TEMPDIR_COMPILE
2831	cd $TEMPDIR_COMPILE
2832	tar -xf $make_depository > /dev/null 2>&1
2833	cd - > /dev/null
2834
2835	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
2836	# FILES ON CRAY XC30 SYSTEMS (HLRN III), rsync IS USED INSTEAD
2837	rsync -av -t SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE > /dev/null
2838
2839	else
2840
2841	cp $executable ${TEMPDIR}/a.out
2842
2843	fi
2844
2845
2846	# WECHSEL IN TEMPORAEREN KATALOG
2847	cd $TEMPDIR
2848	printf "\n *** changed to temporary directory: $TEMPDIR"
2849
2850
2851	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2852	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2853	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2854	# ERMITTELN
2855	(( i = 0 ))
2856	while (( i < iout ))
2857	do
2858	(( i = i + 1 ))
2859	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2860	then
2861	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2862	else
2863	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2864	fi
2865	done
2866
2867
2868	# IF REQUIRED, START WITH COMPILING ACTIONS
2869	if [[ $do_compile = true ]]
2870	then
2871
2872
2873	if [[ -f a.out ]]
2874	then
2875
2876	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2877	printf "\n\n\n *** executable a.out found"
2878	printf "\n no compilation required \n"
2879
2880	else
2881
2882	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2883	printf "\n\n\n *** compilation starts \n$striche\n"
2884	printf " *** compilation with make using following options:\n"
2885	printf " make depository: $make_depository"
2886	if [[ "$mopts" != "" ]]
2887	then
2888	printf " make options: $mopts\n"
2889	fi
2890	printf " compilername: $compiler_name\n"
2891	printf " compiler options: $fopts\n"
2892	printf " preprocessor directives: $cpp_options \n"
2893	printf " linker options: $lopts \n"
2894	if [[ "$modules" != "" ]]
2895	then
2896	printf " modules to be load: $modules \n"
2897	fi
2898	printf " source code files: $source_list \n"
2899
2900	if [[ $localhost = nech ]]
2901	then
2902	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2903	cp $TEMPDIR_COMPILE/a.out .
2904	[[ $? != 0 ]] && compile_error=true
2905	rm -rf $TEMPDIR_COMPILE
2906	elif [[ $localhost = ibmh ]]
2907	then
2908	printf " compiler is called via ssh on \"plogin1\" \n"
2909	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2910	[[ ! -f a.out ]] && compile_error=true
2911	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2912	elif [[ $localhost = lcsgib ]]
2913	then
2914	printf " compiler is called via ssh on \"bicegate0\" \n"
2915	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2916	[[ ! -f a.out ]] && compile_error=true
2917	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2918	elif [[ $localhost = lcsgih ]]
2919	then
2920	printf " compiler is called via ssh on \"hicegate0\" \n"
2921	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2922	[[ ! -f a.out ]] && compile_error=true
2923	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2924	elif [[ $localhost = lcflow ]]
2925	then
2926	printf " compiler is called via ssh on \"flow\" \n"
2927	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2928	check_for_file=`/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "ls $TEMPDIR/a.out 2> /dev/null"`
2929	[[ "$check_for_file" = "" ]] && compile_error=true
2930	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2931	elif [[ $localhost = lccrayb \|\| $localhost = lccrayf ]]
2932	then
2933	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2934	else
2935	[[ "$init_cmds" != "" ]] && eval $init_cmds
2936	[[ "$module_calls" != "" ]] && eval $module_calls
2937	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2938	fi
2939
2940	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2941	then
2942	printf "\n +++ error occured while compiling or linking"
2943	locat=compile
2944
2945	exit
2946	else
2947	printf "$striche\n *** compilation finished \n"
2948	fi
2949
2950	fi
2951
2952	fi
2953
2954
2955	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2956	if [[ $local_compile = true ]]
2957	then
2958	cd $HOME
2959	rm -rf $TEMPDIR
2960	locat=local_compile; exit
2961	fi
2962
2963
2964	# BEREITSTELLEN DER INPUT-DATEIEN
2965	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2966	(( i = 0 ))
2967	while (( i < iin ))
2968	do
2969	(( i = i + 1 ))
2970	if (( i == 1 ))
2971	then
2972	printf "\n\n *** providing INPUT-files:\n$striche"
2973	fi
2974
2975
2976	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2977	if [[ "${transin[$i]}" = unavailable ]]
2978	then
2979	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2980	then
2981	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2982	printf "\n is not available!"
2983	else
2984	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2985	printf "\n is not available!"
2986	fi
2987	continue
2988	fi
2989
2990	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2991	files_for_pes=false; datentyp=file
2992	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2993	then
2994	files_for_pes=true; datentyp=directory
2995	actionin[$i]=""
2996	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2997	then
2998	actionin[$i]=""
2999	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3000	then
3001	files_for_pes=true; datentyp=directory
3002	actionin[$i]="ar"
3003	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3004	then
3005	actionin[$i]="ar"
3006	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3007	then
3008	files_for_pes=true; datentyp=directory
3009	actionin[$i]="fl"
3010	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3011	then
3012	actionin[$i]="fl"
3013	fi
3014
3015	if [[ $files_for_pes = true ]]
3016	then
3017	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3018	else
3019	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3020	fi
3021
3022	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3023	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3024	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3025	# SERVER ZU HOLEN
3026	if [[ "${actionin[$i]}" = fl ]]
3027	then
3028	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3029	if [[ $files_for_pes = false ]]
3030	then
3031	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3032	then
3033	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3034	got_tmp[$i]=true
3035	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3036	then
3037	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3038	printf "\n *** trying to use backup copy in \"$WORK\" "
3039	cp $WORK/${frelin[$i]} ${localin[$i]}
3040	else
3041	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3042	printf "\n or \"$tmp_data_catalog\" does not exist!"
3043	printf "\n *** trying to get copy from archive"
3044	actionin[$i]=ar
3045	fi
3046	else
3047	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3048	then
3049	mkdir ${localin[$i]}
3050	cd $tmp_data_catalog/${frelin[$i]}
3051	for file in $(ls *)
3052	do
3053	ln $file $TEMPDIR/${localin[$i]}
3054	done
3055	cd $TEMPDIR
3056	got_tmp[$i]=true
3057	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3058	then
3059	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3060	printf "\n *** trying to use backup copy in \"$WORK\" "
3061	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3062	else
3063	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3064	printf "\n or \"$tmp_data_catalog\" does not exist!"
3065	printf "\n *** trying to get copy from archive"
3066	actionin[$i]=ar
3067	fi
3068	fi
3069	fi
3070
3071
3072	# DATEI LIEGT AUF ARCHIV-SERVER
3073	if [[ "${actionin[$i]}" = ar ]]
3074	then
3075
3076	if [[ $files_for_pes = false ]]
3077	then
3078	printf "\n file will be restored from archive-system ($archive_system)!"
3079	else
3080	printf "\n directory will be restored from archive-system ($archive_system)!"
3081	fi
3082
3083	file_restored=false
3084
3085	if [[ $archive_system = asterix ]]
3086	then
3087	do_stagein=true
3088	(( stagein_anz = 0 ))
3089	while [[ $do_stagein = true ]]
3090	do
3091	if [[ $files_for_pes = false ]]
3092	then
3093	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3094	else
3095	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3096	fi
3097	cat STAGEIN_OUTPUT
3098	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3099	then
3100	file_restored=true
3101	do_stagein=false
3102	else
3103	(( stagein_anz = stagein_anz + 1 ))
3104	if (( stagein_anz == 10 ))
3105	then
3106	printf "\n +++ stagein stoped after 10 tries"
3107	locat=stage
3108	exit
3109	fi
3110	printf "\n +++ restoring from archive failed, trying again:"
3111	sleep 900
3112	fi
3113	done
3114	elif [[ $archive_system = DMF ]]
3115	then
3116	if [[ $files_for_pes = false ]]
3117	then
3118	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3119	locat=DMF
3120	exit
3121	else
3122	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3123	cp -r $ARCHIVE/${frelin[$i]} $PWD
3124	file_restored=true
3125	fi
3126	elif [[ $archive_system = tivoli ]]
3127	then
3128	if [[ $files_for_pes = false ]]
3129	then
3130	if [[ $localhost = lcsgih ]]
3131	then
3132	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3133	else
3134	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3135	fi
3136	else
3137	(( inode = 0 ))
3138	while (( inode < nodes ))
3139	do
3140	if [[ $localhost = lcsgih ]]
3141	then
3142	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3143	else
3144	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3145	fi
3146	(( inode = inode + 1 ))
3147	done
3148	fi
3149	file_restored=true
3150	elif [[ $archive_system = ut ]]
3151	then
3152	if [[ $files_for_pes = false ]]
3153	then
3154	cp $UT/${frelin[$i]} .
3155	else
3156	(( inode = 0 ))
3157	while (( inode < nodes ))
3158	do
3159	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3160	(( inode = inode + 1 ))
3161	done
3162	fi
3163	file_restored=true
3164	else
3165	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3166	locat=rearchive
3167	exit
3168	fi
3169
3170	if [[ $file_restored = true ]]
3171	then
3172
3173	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3174	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3175	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3176	if [[ $files_for_pes = false ]]
3177	then
3178	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3179	else
3180	mkdir $tmp_data_catalog/${frelin[$i]}
3181	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3182	fi
3183	got_tmp[$i]=true
3184
3185	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3186	mv ${frelin[$i]} ${localin[$i]}
3187
3188	fi
3189	fi
3190
3191
3192	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3193	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3194	then
3195
3196	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3197	then
3198
3199	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3200	printf "\n file will be provided for $numprocs processors"
3201	mkdir ${localin[$i]}
3202	ival=$numprocs
3203	(( ii = 0 ))
3204	while (( ii <= ival-1 ))
3205	do
3206	if (( ii < 10 ))
3207	then
3208	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3209	elif (( ii < 100 ))
3210	then
3211	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3212	elif (( ii < 1000 ))
3213	then
3214	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3215	else
3216	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3217	fi
3218	(( ii = ii + 1 ))
3219	done
3220
3221	else
3222
3223	if [[ $files_for_pes = true ]]
3224	then
3225
3226	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3227	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3228	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3229	# PER MOVE UMBENANNT WERDEN
3230	printf "\n providing $numprocs files for the respective processors"
3231	mkdir ${localin[$i]}
3232	if [[ $link_local_input = true ]]
3233	then
3234	printf " using ln -f\n"
3235	cd ${absnamein[$i]}
3236	for file in $(ls *)
3237	do
3238	ln -f $file ${localin[$i]}
3239	done
3240	cd $TEMPDIR
3241	fi
3242	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3243	if [[ ! -f "${localin[$i]}/_0000" ]]
3244	then
3245	if [[ $link_local_input = true ]]
3246	then
3247	printf " ln failed for .../_0000, using cp...\n"
3248	fi
3249	cp -r ${absnamein[$i]}/* ${localin[$i]}
3250	fi
3251
3252	else
3253	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3254	if [[ $link_local_input = true ]]
3255	then
3256	printf " using ln -f\n"
3257	ln -f ${absnamein[$i]} ${localin[$i]}
3258	fi
3259	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3260	if [[ ! -f "${localin[$i]}" ]]
3261	then
3262	if [[ $link_local_input = true ]]
3263	then
3264	printf " ln failed, using cp...\n"
3265	fi
3266	cp ${absnamein[$i]} ${localin[$i]}
3267	fi
3268	fi
3269	fi
3270	fi
3271
3272	done
3273	if (( i != 0 ))
3274	then
3275	printf "\n$striche\n *** all INPUT-files provided \n"
3276	fi
3277
3278
3279	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3280	(( i = 0 ))
3281	while (( i < iic ))
3282	do
3283	(( i = i + 1 ))
3284	if (( i == 1 ))
3285	then
3286	printf "\n\n *** execution of INPUT-commands:\n$striche"
3287	fi
3288	printf "\n >>> ${in_command[$i]}"
3289	eval ${in_command[$i]}
3290	if (( i == iic ))
3291	then
3292	printf "\n$striche\n"
3293	fi
3294	done
3295
3296
3297	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3298	cpurest=${cpumax}.
3299
3300
3301	# START DVR STREAMING SERVER
3302	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3303	then
3304	if [[ "$dvr_server" != "" ]]
3305	then
3306
3307	printf "\n\n *** preparing the dvr streaming server configuration file"
3308
3309	# Check, if a dvr server is already running
3310	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3311	if [[ "$running_dvrserver_id" != "" ]]
3312	then
3313
3314	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3315	printf "\n This server is used instead starting a new one!"
3316	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3317
3318	else
3319
3320	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3321	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3322	then
3323	cp ${PALM_BIN}/.dvrserver.config .
3324
3325	# Entering the BASEDIR, UID and GID into this file
3326	user_id=`id -u`
3327	group_id=`id -g`
3328	# & is needed as seperator, because TEMPDIR contains /
3329	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3330	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3331	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3332	mv .dvrserver.3 .dvrserver.config
3333	rm .dvrserver.1 .dvrserver.2
3334
3335	# Start dvr server in background, get his id and print on terminal
3336	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3337	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3338	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3339	local_dvrserver_running=.TRUE.
3340	else
3341	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3342	printf "\n \"$PALM_BIN\" "
3343	locat=dvr
3344	exit
3345	fi
3346
3347	fi
3348
3349	else
3350	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3351	fi
3352	fi
3353
3354
3355	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3356	# LESEN VON PALM)
3357	cat > ENVPAR << %%END%%
3358	&envpar run_identifier = '$fname', host = '$localhost',
3359	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3360	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3361	maximum_cpu_time_allowed = ${cpumax}.,
3362	revision = '$global_revision',
3363	local_dvrserver_running = $local_dvrserver_running /
3364
3365	%%END%%
3366
3367
3368	# PROGRAMMSTART
3369	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3370	PATH=$PATH:$TEMPDIR
3371
3372	# MPI debug option (argument checking, slows down execution due to increased latency)
3373	if [[ "$mpi_debug" = true ]]
3374	then
3375	export MPI_CHECK_ARGS=1
3376	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3377	fi
3378
3379	if [[ "$totalview" = true ]]
3380	then
3381	printf "\n *** totalview debugger will be used"
3382	tv_opt="-tv"
3383	else
3384	tv_opt=""
3385	fi
3386
3387	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3388	then
3389	if [[ "$ENVIRONMENT" = BATCH ]]
3390	then
3391	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3392	then
3393	printf "\n +++ debug is allowed in interactive mode only"
3394	locat=debug
3395	exit
3396	fi
3397	fi
3398	if [[ $localhost = ibmh ]]
3399	then
3400
3401	# SETUP THE IBM MPI ENVIRONMENT
3402	export MP_SHARED_MEMORY=yes
3403	export AIXTHREADS_SCOPE=S
3404	export OMP_NUM_THREADS=$threads_per_task
3405	export AUTHSTATE=files
3406	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3407
3408	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3409	export MP_ADAPTER_USE=shared
3410	export MP_CPU_USE=multiple
3411	export MP_TIMEOUT=1200
3412
3413	unset MP_TASK_AFFINITY
3414
3415	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3416	#(( ii = 1 ))
3417	#while (( ii <= $numprocs ))
3418	#do
3419	# echo $localhost_realname >> hostfile
3420	# (( ii = ii + 1 ))
3421	#done
3422	#export MP_HOSTFILE=hostfile
3423
3424	if [[ "$LOADLBATCH" = yes ]]
3425	then
3426	totalview poe a.out $ROPTS
3427	else
3428	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3429	export TVDSVRLAUNCHCMD=ssh
3430	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3431	fi
3432	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3433	then
3434	# CURRENTLY NO DEBUGGER ON LCSGI
3435	if [[ $run_coupled_model = true ]]
3436	then
3437	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3438	locat=debug
3439	exit
3440	else
3441	echo "no_coupling" > runfile_atmos
3442	fi
3443	(( ii = $numprocs / $threads_per_task ))
3444	export OMP_NUM_THREADS=$threads_per_task
3445	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3446	if [[ $threads_per_task != 1 ]]
3447	then
3448	printf "\n threads per task: $threads_per_task"
3449	fi
3450	printf "\n\n"
3451	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3452	then
3453	# export MPI_LAUNCH_TIMEOUT=360
3454	if [[ "$totalview" = true ]]
3455	then
3456	printf "\n running totalview debugger"
3457	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3458	else
3459	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3460	fi
3461	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3462	then
3463	# ulimit -s 300000 # A too large stack size causes problems
3464	# export MV2_NUM_PORTS=2
3465	# export MV2_CPU_MAPPING=0:1:2:3
3466	if [[ "$totalview" = true ]]
3467	then
3468	printf "\n running totalview debugger"
3469	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3470	else
3471	mpiexec ./a.out $ROPTS < runfile_atmos
3472	fi
3473	fi
3474	else
3475	printf "\n +++ no debug available on \"$localhost\" "
3476	printf "\n or not implemented in mrun so far"
3477	locat=debug
3478	exit
3479	fi
3480
3481	# end debug mode
3482	else
3483
3484	# normal execution
3485	if [[ -n $numprocs ]]
3486	then
3487	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3488	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3489	then
3490	# SETUP THE IBM MPI ENVIRONMENT
3491	if [[ $host != ibmh && $host != ibmkisti ]]
3492	then
3493	export MP_SHARED_MEMORY=yes
3494	export AIXTHREAD_SCOPE=S
3495	export OMP_NUM_THREADS=$threads_per_task
3496	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3497	export AUTHSTATE=files
3498	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3499	# export MP_PRINTENV=yes
3500
3501	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3502	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3503	export MP_WAIT_MODE=poll
3504	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3505	fi
3506
3507	if [[ $host = ibmkisti ]]
3508	then
3509	export LANG=en_US
3510	export MP_SHARED_MEMORY=yes
3511	if [[ $threads_per_task = 1 ]]
3512	then
3513	export MP_SINGLE_THREAD=yes
3514	export MEMORY_AFFINITY=MCM
3515	else
3516	export OMP_NUM_THREADS=$threads_per_task
3517	fi
3518	fi
3519
3520	if [[ "$LOADLBATCH" = yes ]]
3521	then
3522	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3523	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3524	then
3525	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3526	else
3527	if [[ $run_coupled_model = false ]]
3528	then
3529	if [[ "$ocean_file_appendix" = true ]]
3530	then
3531	echo "precursor_ocean" > runfile_atmos
3532	else
3533	echo "precursor_atmos" > runfile_atmos
3534	fi
3535	else
3536	(( iia = $numprocs_atmos / $threads_per_task ))
3537	(( iio = $numprocs_ocean / $threads_per_task ))
3538	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3539	printf "\n using $coupled_mode coupling"
3540	printf "\n\n"
3541	echo "coupled_run $iia $iio" > runfile_atmos
3542	fi
3543	poe ./a.out $ROPTS < runfile_atmos
3544	fi
3545	else
3546	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3547	then
3548	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3549	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3550	then
3551	if [[ -f $hostfile ]]
3552	then
3553	cp $hostfile hostfile
3554	else
3555	(( ii = 1 ))
3556	while (( ii <= $numprocs ))
3557	do
3558	echo $localhost_realname >> hostfile
3559	(( ii = ii + 1 ))
3560	done
3561	fi
3562	export MP_HOSTFILE=hostfile
3563	if [[ $run_coupled_model = false ]]
3564	then
3565	if [[ "$ocean_file_appendix" = true ]]
3566	then
3567	echo "precursor_ocean" > runfile_atmos
3568	else
3569	echo "precursor_atmos" > runfile_atmos
3570	fi
3571	else
3572	(( iia = $numprocs_atmos / $threads_per_task ))
3573	(( iio = $numprocs_ocean / $threads_per_task ))
3574	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3575	printf "\n using $coupled_mode coupling"
3576	printf "\n\n"
3577	echo "coupled_run $iia $iio" > runfile_atmos
3578	fi
3579	if [[ $localhost = ibmy ]]
3580	then
3581	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3582	else
3583	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3584	fi
3585
3586	else
3587	if [[ "$host_file" = "" ]]
3588	then
3589	printf "\n +++ no hostfile given in configuration file"
3590	locat=config_file
3591	exit
3592	else
3593	eval host_file=$host_file
3594	fi
3595	export MP_HOSTFILE=$host_file
3596	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3597	fi
3598	fi
3599	elif [[ $host = nech \|\| $host = necriam ]]
3600	then
3601	(( ii = nodes ))
3602	if [[ $ii = 1 ]]
3603	then
3604	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3605	export MPIPROGINF=YES
3606	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3607	echo "*** execution on single node with mpirun"
3608	mpirun -np $numprocs ./a.out $ROPTS
3609	else
3610	(( i = 0 ))
3611	while (( i < ii ))
3612	do
3613	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3614	(( i = i + 1 ))
3615	done
3616
3617	echo "#!/bin/sh" > mpi_exec_shell
3618	echo " " >> mpi_exec_shell
3619	echo "set -u" >> mpi_exec_shell
3620	echo "F_ERRCNT=0" >> mpi_exec_shell
3621	echo "MPIPROGINV=YES" >> mpi_exec_shell
3622	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3623	echo "cpurest=$cpurest" >> mpi_exec_shell
3624	echo "fname=$fname" >> mpi_exec_shell
3625	echo "localhost=$localhost" >> mpi_exec_shell
3626	echo "return_addres=$return_addres" >> mpi_exec_shell
3627	echo "return_username=$return_username" >> mpi_exec_shell
3628	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3629	echo "write_binary=$write_binary" >> mpi_exec_shell
3630	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3631	echo " " >> mpi_exec_shell
3632	echo "export F_ERRCNT" >> mpi_exec_shell
3633	echo "export MPIPROGINV" >> mpi_exec_shell
3634	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3635	echo "export cpurest" >> mpi_exec_shell
3636	echo "export fname" >> mpi_exec_shell
3637	echo "export localhost" >> mpi_exec_shell
3638	echo "export return_addres" >> mpi_exec_shell
3639	echo "export return_username" >> mpi_exec_shell
3640	echo "export tasks_per_node" >> mpi_exec_shell
3641	echo "export write_binary" >> mpi_exec_shell
3642	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3643	echo " " >> mpi_exec_shell
3644	echo "exec ./a.out" >> mpi_exec_shell
3645
3646	chmod u+x mpi_exec_shell
3647	export MPIPROGINF=YES
3648	mpirun -f multinode_config &
3649	wait
3650
3651	fi
3652	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3653	then
3654
3655	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3656	# DOES NOT EXIST
3657	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3658	then
3659	if [[ -f $hostfile ]]
3660	then
3661	cp $hostfile hostfile
3662	(( ii = $numprocs / $threads_per_task ))
3663	else
3664	(( ii = 1 ))
3665	while (( ii <= $numprocs / $threads_per_task ))
3666	do
3667	echo $localhost_realname >> hostfile
3668	(( ii = ii + 1 ))
3669	done
3670	fi
3671	eval zeile=\"`head -n $ii hostfile`\"
3672	printf "\n *** running on: $zeile"
3673	fi
3674
3675	(( ii = $numprocs / $threads_per_task ))
3676	export OMP_NUM_THREADS=$threads_per_task
3677	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3678	if [[ $threads_per_task != 1 ]]
3679	then
3680	# increase stack size to unlimited, because large runs
3681	# may abort otherwise
3682	ulimit -Ss unlimited
3683	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3684	fi
3685	if [[ $run_coupled_model = false ]]
3686	then
3687	if [[ "$ocean_file_appendix" = true ]]
3688	then
3689	echo "precursor_ocean" > runfile_atmos
3690	else
3691	echo "precursor_atmos" > runfile_atmos
3692	fi
3693	printf "\n\n"
3694	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3695	then
3696	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3697	then
3698	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3699	# export MPI_DSM_DISTRIBUTE=1
3700	# MPI_DSM_CPULIST: pin MPI processes to cores
3701	if [[ $use_openmp = false ]]
3702	then
3703	if [[ "$sgi_feature" = ice2 ]]
3704	then
3705	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3706	else
3707	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3708	fi
3709	else
3710	unset MPI_DSM_CPULIST
3711	fi
3712	# MPI_IB_RAILS: use both IB rails on ICE2
3713	export MPI_BUFS_PER_HOST=512
3714	export MPI_IB_RAILS=2
3715	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3716	export MPI_CONNECTIONS_THRESHOLD=8192
3717	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3718	export MPI_TYPE_DEPTH=20
3719	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3720	export MPI_GROUP_MAX=64
3721	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3722	if [[ $use_openmp = true ]]
3723	then
3724	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3725	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3726	else
3727	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3728	fi
3729
3730	# next is test for openmp usage
3731	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3732	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3733	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3734	then
3735	export MV2_NUM_PORTS=2
3736	# The default setting of MV2_CPU_MAPPING gives best results
3737	# export MV2_ENABLE_AFFINITY=1
3738	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3739	# if [[ "$sgi_feature" = ice2 ]]
3740	# then
3741	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3742	# else
3743	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3744	# fi
3745	if [[ $use_openmp = true ]]
3746	then
3747	unset MV2_CPU_MAPPING
3748	export MV2_ENABLE_AFFINITY=0
3749	fi
3750	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3751	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3752	if [[ $use_openmp = true ]]
3753	then
3754	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3755	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3756	else
3757	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3758	fi
3759	elif [[ "$mpilib" = impi ]]
3760	then
3761	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3762	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3763	fi
3764	elif [[ $host = lccrayb ]]
3765	then
3766	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3767	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3768	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3769	elif [[ $host = lccrayf ]]
3770	then
3771	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3772	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3773	then
3774	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3775	elif [[ $host = lcflow ]]
3776	then
3777	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3778	elif [[ $host = lcsb ]]
3779	then
3780	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3781	elif [[ $host = lckiaps ]]
3782	then
3783	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3784	elif [[ $host = lckyu* ]]
3785	then
3786	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3787	else
3788	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3789	fi
3790	else
3791
3792	# currently there is no full MPI-2 support on ICE and XT4
3793	(( iia = $numprocs_atmos / $threads_per_task ))
3794	(( iio = $numprocs_ocean / $threads_per_task ))
3795	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3796	printf "\n using $coupled_mode coupling"
3797	printf "\n\n"
3798
3799	if [[ $coupled_mode = "mpi2" ]]
3800	then
3801	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3802	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3803	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3804	then
3805
3806	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3807	then
3808	# export MPI_LAUNCH_TIMEOUT=360
3809	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3810	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3811	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3812	then
3813	# ulimit -s 300000 # A too large stack size causes problems
3814	# export MV2_NUM_PORTS=2
3815	# export MV2_CPU_MAPPING=0:1:2:3
3816	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3817	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3818	fi
3819
3820	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3821	then
3822
3823	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3824	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3825
3826	else
3827	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3828	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3829	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3830	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3831	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3832	fi
3833	wait
3834
3835	else
3836
3837	echo "coupled_run $iia $iio" > runfile_atmos
3838	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3839	then
3840
3841	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3842	then
3843	# export MPI_LAUNCH_TIMEOUT=360
3844	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3845	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3846	then
3847	# ulimit -s 300000 # A too large stack size causes problems
3848	# export MV2_NUM_PORTS=2
3849	# export MV2_CPU_MAPPING=0:1:2:3
3850	mpiexec ./a.out $ROPTS < runfile_atmos
3851	fi
3852
3853	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3854	then
3855
3856	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3857
3858	elif [[ $host = lck \|\| $host = lckordi ]]
3859	then
3860
3861	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3862
3863	elif [[ $host = lckyu* ]]
3864	then
3865
3866	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3867
3868	fi
3869	wait
3870	fi
3871
3872	fi
3873	elif [[ $host = lckyoto ]]
3874	then
3875	set -xv
3876	export P4_RSHCOMMAND=plesh
3877	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3878	if [[ "$ENVIRONMENT" = BATCH ]]
3879	then
3880	if [[ "$cond2" = fujitsu ]]
3881	then
3882	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3883	elif [[ "cond2" = pgi ]]
3884	then
3885	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3886	else
3887	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3888	fi
3889	else
3890	if [[ "$cond2" = "" ]]
3891	then
3892	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3893	else
3894	mpirun -np $numprocs ./a.out $ROPTS
3895	fi
3896	fi
3897	set +xv
3898	elif [[ $host = lctit ]]
3899	then
3900	export OMP_NUM_THREADS=$threads_per_task
3901	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3902	if [[ "$threads_per_task" != 1 ]]
3903	then
3904	export MV2_ENABLE_AFFINITY=0
3905	fi
3906	echo "----- PBS_NODEFILE content:"
3907	cat $PBS_NODEFILE
3908	echo "-----"
3909	(( ii = $numprocs / $threads_per_task ))
3910	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3911	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3912	else
3913	mpprun -n $numprocs a.out $ROPTS
3914	fi
3915	[[ $? != 0 ]] && execution_error=true
3916
3917
3918	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3919	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3920	then
3921	apprentice
3922	fi
3923	else
3924	a.out $ROPTS
3925	fi
3926	fi
3927	if [[ $? != 0 \|\| $execution_error = true ]]
3928	then
3929
3930	# ABBRUCH BEI LAUFZEITFEHLER
3931	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3932	printf "\n +++ runtime error occured"
3933	locat=execution
3934	exit
3935	else
3936	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3937	printf "\n$striche\n *** execution finished \n"
3938
3939	# Stop the dvr streaming server and process the dvr output in order
3940	# to create dvrs- and html-files containing all streams
3941	if [[ "$dvrserver_id" != "" ]]
3942	then
3943	kill $dvrserver_id
3944	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3945
3946	# If there is a directory, data have been output by the
3947	# streaming server. Otherwise, user has chosen dvrp_output=local
3948	if [[ -d DATA_DVR ]]
3949	then
3950
3951	# Add the current dvr configuration file to the dvr output
3952	# directory
3953	cp .dvrserver.config DATA_DVR
3954
3955	# Process the dvr output (option -s for also generating
3956	# sequence mode data)
3957	process_dvr_output -d DATA_DVR -f $fname -s
3958
3959	else
3960
3961	# Process the local output
3962	process_dvr_output -l -d DATA_DVR -f $fname
3963
3964	fi
3965
3966	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3967	then
3968
3969	# Process dvr output generated in local mode (dvrp_output=local)
3970	process_dvr_output -l -d DATA_DVR -f $fname
3971
3972	fi
3973	fi
3974
3975
3976
3977	# Call of combine_plot_fields in order to merge single files written
3978	# by each PE into one file.
3979	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3980	then
3981	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3982	printf "\n 2d- and/or 3d-data may be incomplete!"
3983	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3984	elif [[ "$combine_plot_fields" == true ]]
3985	then
3986	if [[ $localhost = lccrayh \|\| $localhost = lccrayb ]]
3987	then
3988	printf "\n\n\n *** post-processing: now executing \"aprun -n 1 -N 1 combine_plot_fields${block}.x\" ..."
3989	aprun -n 1 -N 1 combine_plot_fields${block}.x #$ROPTS < runfile_atmos
3990	else
3991	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3992	combine_plot_fields${block}.x
3993	fi
3994	else
3995	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3996	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3997	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3998	fi
3999
4000
4001
4002	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4003	(( i = 0 ))
4004	while (( i < ioc ))
4005	do
4006	(( i = i + 1 ))
4007	if (( i == 1 ))
4008	then
4009	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4010	fi
4011	printf "\n >>> ${out_command[$i]}"
4012	eval ${out_command[$i]}
4013	if (( i == ioc ))
4014	then
4015	printf "\n$striche\n"
4016	fi
4017	done
4018
4019
4020	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4021	if [[ $do_trace = true ]]
4022	then
4023	printf "\n\n"
4024	ls -al
4025	fi
4026
4027
4028
4029	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4030	(( i = 0 ))
4031	while (( i < iout ))
4032	do
4033	(( i = i + 1 ))
4034	if (( i == 1 ))
4035	then
4036	printf "\n\n *** saving OUTPUT-files:\n$striche"
4037	fi
4038
4039	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4040	files_for_pes=false; filetyp=file
4041	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4042	then
4043	files_for_pes=true; filetyp=directory
4044	actionout[$i]=""
4045	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4046	then
4047	actionout[$i]=""
4048	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4049	then
4050	files_for_pes=true; filetyp=directory
4051	actionout[$i]="ar"
4052	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4053	then
4054	actionout[$i]="ar"
4055	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4056	then
4057	files_for_pes=true; filetyp=directory
4058	actionout[$i]="fl"
4059	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4060	then
4061	actionout[$i]="fl"
4062	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4063	then
4064	files_for_pes=true; filetyp=directory
4065	actionout[$i]="tr"
4066	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4067	then
4068	actionout[$i]="tr"
4069	fi
4070
4071	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4072	then
4073	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4074	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4075	then
4076	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4077	else
4078
4079
4080	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4081	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4082	# REMOTE-RECHNUNGEN
4083	if [[ "${actionout[$i]}" = tr ]]
4084	then
4085	if [[ $localhost != $fromhost ]]
4086	then
4087	if [[ $files_for_pes = false ]]
4088	then
4089	cps=""
4090	cst=""
4091	else
4092	cps=-c
4093	cst="/"
4094	fi
4095	if [[ $localhost = nech ]]
4096	then
4097
4098	# TRANSFER IN EIGENSTAENDIGEM JOB
4099	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4100	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4101	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4102	if [[ $files_for_pes = false ]]
4103	then
4104	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4105	else
4106	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4107	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4108	fi
4109
4110	echo "set -x" > transfer_${localout[$i]}
4111	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4112
4113	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4114	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4115	printf "\n or higher cycle\n"
4116	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4117
4118	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4119
4120	if [[ $localhost = nech ]]
4121	then
4122	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4123	else
4124	if [[ "$LOGNAME" = b323013 ]]
4125	then
4126	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4127	else
4128	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4129	fi
4130	fi
4131
4132	else
4133
4134	# TRANSFER INNERHALB DIESES JOBS
4135	transfer_failed=false
4136	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4137	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4138	if [[ $localhost = lccrayb ]]
4139	then
4140	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4141	else
4142	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4143	fi
4144	[[ $? != 0 ]] && transfer_failed=true
4145
4146	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4147	# LOKALER MASCHINE ANLEGEN
4148	if [[ $transfer_failed = true ]]
4149	then
4150	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4151	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4152
4153	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4154	# ANLEGEN.
4155	eval local_catalog=${pathout[$i]}
4156	if [[ ! -d $local_catalog ]]
4157	then
4158	printf " *** local directory does not exist. Trying to create:\n"
4159	printf " $local_catalog \n"
4160	mkdir -p $local_catalog
4161	fi
4162	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4163	transfer_problems=true
4164	fi
4165	fi
4166	else
4167
4168	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4169	actionout[$i]=""
4170	fi
4171	fi
4172
4173
4174	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4175	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4176	# REMOTE-RECHNUNGEN
4177	if [[ "${actionout[$i]}" = tra ]]
4178	then
4179	if [[ $localhost != $fromhost ]]
4180	then
4181	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4182	then
4183
4184	# TRANSFER IN EIGENSTAENDIGEM JOB
4185	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4186	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4187	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4188	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4189
4190	echo "set -x" > transfer_${localout[$i]}
4191	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4192
4193	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4194	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4195	printf "\n or higher cycle\n"
4196	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4197
4198	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4199
4200	if [[ $localhost = nech ]]
4201	then
4202	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4203	else
4204	if [[ $LOGNAME = b323013 ]]
4205	then
4206	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4207	else
4208	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4209	fi
4210	fi
4211
4212	else
4213
4214	# TRANSFER INNERHALB DIESES JOBS
4215	transfer_failed=false
4216	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4217	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4218	if [[ $localhost = lccrayb ]]
4219	then
4220	ssh $usern@blogin1 "cd $TEMPDIR; batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}"
4221	else
4222	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4223	fi
4224	[[ $? != 0 ]] && transfer_failed=true
4225
4226	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4227	# LOKALER MASCHINE ANLEGEN
4228	if [[ $transfer_failed = true ]]
4229	then
4230	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4231	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4232
4233	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4234	# ANLEGEN
4235	eval local_catalog=${pathout[$i]}
4236	if [[ ! -d $local_catalog ]]
4237	then
4238	printf " *** local directory does not exist. Trying to create:\n"
4239	printf " $local_catalog \n"
4240	mkdir -p $local_catalog
4241	fi
4242
4243	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4244	transfer_problems=true
4245	fi
4246	fi
4247	else
4248
4249	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4250	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4251	actionout[$i]=a
4252	fi
4253	fi
4254
4255
4256	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4257	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4258	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4259	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4260	if [[ "${actionout[$i]}" = fl ]]
4261	then
4262	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4263	chmod g+rx $tmp_data_catalog
4264	if [[ $files_for_pes = false ]]
4265	then
4266	printf "\n >>> OUTPUT: ${localout[$i]} to"
4267	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4268	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4269	else
4270	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4271	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4272	mkdir $tmp_data_catalog/${frelout[$i]}
4273	cd ${localout[$i]}
4274	for file in $(ls *)
4275	do
4276	ln -f $file $tmp_data_catalog/${frelout[$i]}
4277	done
4278	cd $TEMPDIR
4279	fi
4280
4281
4282	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4283	if [[ $store_on_archive_system = true ]]
4284	then
4285
4286	if [[ $archive_system = asterix ]]
4287	then
4288	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4289	if [[ $files_for_pes = false ]]
4290	then
4291	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4292	else
4293	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4294	fi
4295	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4296	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4297	echo "then" >> archive_${frelout[$i]}
4298	echo " do_stageout=false" >> archive_${frelout[$i]}
4299	echo "else" >> archive_${frelout[$i]}
4300	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4301	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4302	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4303	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4304	if [[ $files_for_pes = false ]]
4305	then
4306	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4307	else
4308	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4309	fi
4310	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4311	echo "fi" >> archive_${frelout[$i]}
4312	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4313	elif [[ $archive_system = DMF ]]
4314	then
4315	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4316	if [[ $files_for_pes = false ]]
4317	then
4318	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4319	locat=DMF
4320	exit
4321	else
4322	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4323	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4324	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4325	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4326	fi
4327	elif [[ $archive_system = tivoli ]]
4328	then
4329	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4330	if [[ $files_for_pes = false ]]
4331	then
4332	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4333	echo "set -x" >> archive_${frelout[$i]}
4334	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4335	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4336	else
4337
4338	echo "set -x" >> archive_${frelout[$i]}
4339	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4340	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4341	cd $tmp_data_catalog
4342	all_files=`ls -1 ${frelout[$i]}/*`
4343	cd - > /dev/null
4344	(( inode = 0 ))
4345	(( tp1 = tasks_per_node + 1 ))
4346	while (( inode < nodes ))
4347	do
4348	# echo "*** all_files = \"$all_files\" "
4349	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4350	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4351	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4352	# echo "*** files = \"$files\" "
4353	# echo "*** all_files = \"$all_files\" "
4354	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4355	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4356	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4357	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4358	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4359	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4360	(( inode = inode + 1 ))
4361	done
4362	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4363	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4364	fi
4365	elif [[ $archive_system = ut ]]
4366	then
4367	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4368	if [[ $files_for_pes = false ]]
4369	then
4370	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4371	echo "set -x" >> archive_${frelout[$i]}
4372	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4373	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4374	else
4375
4376	echo "set -x" >> archive_${frelout[$i]}
4377	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4378	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4379	cd $tmp_data_catalog
4380	all_files=`ls -1 ${frelout[$i]}/*`
4381	cd - > /dev/null
4382	(( inode = 0 ))
4383	(( tp1 = tasks_per_node + 1 ))
4384	while (( inode < nodes ))
4385	do
4386	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4387	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4388	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4389	(( inode = inode + 1 ))
4390	done
4391	fi
4392	elif [[ $archive_system = none ]]
4393	then
4394	printf " +++ archiving on $localhost not available!\n"
4395	fi
4396
4397	if [[ $archive_system != none ]]
4398	then
4399	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4400	then
4401	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4402	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4403	elif [[ $localhost = nech ]]
4404	then
4405	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4406	fi
4407	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4408	fi
4409	else
4410	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4411	fi
4412
4413
4414	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4415	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4416	if [[ $files_for_pes = false ]]
4417	then
4418	cat /dev/null > ${pathout[$i]}
4419	else
4420	mkdir -p ${pathout[$i]}
4421	fi
4422
4423	fi
4424
4425
4426	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4427	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4428	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4429	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4430	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4431	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4432	if [[ "${actionout[$i]}" = ar ]]
4433	then
4434	if [[ $files_for_pes = false ]]
4435	then
4436	printf "\n >>> OUTPUT: ${localout[$i]} to"
4437	printf "\n ${pathout[$i]}"
4438	printf "\n File will be copied to archive-system ($archive_system) !\n"
4439	else
4440	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4441	printf "\n ${pathout[$i]}"
4442	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4443	fi
4444	mv ${localout[$i]} ${frelout[$i]}
4445
4446	file_saved=false
4447
4448	if [[ $archive_system = asterix ]]
4449	then
4450	do_stageout=true
4451	(( stageout_anz = 0 ))
4452	while [[ $do_stageout = true ]]
4453	do
4454	if [[ $files_for_pes = false ]]
4455	then
4456	stageout ${frelout[$i]} > STAGE_OUTPUT
4457	else
4458	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4459	fi
4460	cat STAGE_OUTPUT
4461	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4462	then
4463	file_saved=true
4464	do_stageout=false
4465	else
4466	if [[ $files_for_pes = false ]]
4467	then
4468	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4469	else
4470	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4471	fi
4472	(( stageout_anz = stageout_anz + 1 ))
4473	if (( stageout_anz == 10 ))
4474	then
4475	printf "\n +++ stoped after 10 unsuccessful tries!"
4476	archive_save=false
4477	do_stageout=false
4478	else
4479	printf "\n *** new try to store on archive after 15 min:"
4480	sleep 900
4481	fi
4482	fi
4483	done
4484	elif [[ $archive_system = DMF ]]
4485	then
4486	if [[ $files_for_pes = false ]]
4487	then
4488	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4489	locat=DMF
4490	exit
4491	else
4492	rm -rf $ARCHIVE/${frelout[$i]}
4493	cp -r ${frelout[$i]} $ARCHIVE
4494	fi
4495	file_saved=true
4496	elif [[ $archive_system = tivoli ]]
4497	then
4498	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4499	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4500	# GELEGT WERDEN
4501	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4502	chmod g+rx $tmp_data_catalog
4503	if [[ $files_for_pes = false ]]
4504	then
4505	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4506	else
4507	mkdir $tmp_data_catalog/${frelout[$i]}
4508	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4509	fi
4510
4511	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4512	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4513	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4514	if [[ $files_for_pes = false ]]
4515	then
4516	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4517	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4518	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4519	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4520	else
4521	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4522	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4523	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4524	fi
4525
4526	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4527	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4528	file_saved=true
4529
4530	elif [[ $archive_system = ut ]]
4531	then
4532	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4533	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4534	# GELEGT WERDEN
4535	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4536	chmod g+rx $tmp_data_catalog
4537	if [[ $files_for_pes = false ]]
4538	then
4539	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4540	else
4541	mkdir $tmp_data_catalog/${frelout[$i]}
4542	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4543	fi
4544
4545	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4546	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4547	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4548	if [[ $files_for_pes = false ]]
4549	then
4550	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4551	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4552	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4553	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4554	else
4555	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4556	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4557	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4558	fi
4559
4560	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4561	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4562	file_saved=true
4563
4564	else
4565	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4566	archive_save=false
4567	fi
4568	if [[ $file_saved = true ]]
4569	then
4570	if [[ $files_for_pes = false ]]
4571	then
4572	cat /dev/null > ${pathout[$i]}
4573	else
4574	mkdir -p ${pathout[$i]}
4575	fi
4576	fi
4577	fi
4578
4579	# APPEND AUF LOKALER MASCHINE
4580	if [[ "${actionout[$i]}" = "a" ]]
4581	then
4582	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4583	then
4584	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4585	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4586	else
4587	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4588	cat ${localout[$i]} >> ${pathout[$i]}
4589	fi
4590	fi
4591
4592	# KOPIEREN AUF LOKALER MASCHINE
4593	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4594	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4595	then
4596
4597	# KOPIEREN AUF EINPROZESSORMASCHINE
4598	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4599	then
4600	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4601	if [[ $link_local_output = true ]]
4602	then
4603	printf " using ln -f\n"
4604	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4605	fi
4606	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4607	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4608	then
4609	if [[ $link_local_output = true ]]
4610	then
4611	printf " ln failed, using cp...\n"
4612	fi
4613	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4614	fi
4615	else
4616	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4617	if [[ $link_local_output = true ]]
4618	then
4619	printf " using ln -f\n"
4620	ln -f ${localout[$i]} ${pathout[$i]}
4621	fi
4622	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4623	if [[ ! -f "${pathout[$i]}" ]]
4624	then
4625	if [[ $link_local_output = true ]]
4626	then
4627	printf " ln failed, using cp...\n"
4628	fi
4629	cp ${localout[$i]} ${pathout[$i]}
4630	fi
4631	fi
4632
4633	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4634	then
4635
4636	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4637	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4638	# WIRD DANN KOPIERT
4639	# PER MOVE UMBENANNT WERDEN
4640	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4641	if [[ $link_local_output = true ]]
4642	then
4643	printf " using ln -f\n"
4644	mkdir ${pathout[$i]}
4645	cd ${localout[$i]}
4646	for file in $(ls *)
4647	do
4648	ln -f $file ${pathout[$i]}
4649	done
4650	cd $TEMPDIR
4651	fi
4652	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4653	if [[ ! -f "${pathout[$i]}/_0000" ]]
4654	then
4655	if [[ $link_local_output = true ]]
4656	then
4657	printf " ln failed for .../_0000, using cp...\n"
4658	fi
4659	cp -r ${localout[$i]} ${pathout[$i]}
4660	fi
4661
4662	fi
4663	fi
4664	done
4665	if (( i != 0 ))
4666	then
4667	if [[ $transfer_problems = true ]]
4668	then
4669	printf "\n$striche\n *** OUTPUT-files saved"
4670	printf "\n +++ WARNING: some data transfers failed! \n"
4671	else
4672	printf "\n$striche\n *** all OUTPUT-files saved \n"
4673	fi
4674	fi
4675
4676
4677	# EVENTUELL FOLGEJOB STARTEN
4678	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4679	if [[ -f CONTINUE_RUN ]]
4680	then
4681
4682	if [[ $archive_save = true ]]
4683	then
4684
4685	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4686	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4687	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4688	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4689	# HANDEN
4690	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4691	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4692	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4693	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4694	then
4695	mc=`echo $mc \| sed 's/#/f/g'`
4696	fi
4697
4698
4699	# JOB STARTEN
4700	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4701	echo " $mc"
4702	printf "\n$striche\n"
4703	if [[ $localhost != $fromhost ]]
4704	then
4705
4706	if [[ $localhost = lcsgih \|\| $localhost = lccrayb \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4707	then
4708	echo "*** ssh will be used to initiate restart-runs!"
4709	echo " return_addres=\"$return_addres\" "
4710	echo " return_username=\"$return_username\" "
4711	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4712	then
4713	if [[ $localhost = ibmh ]]
4714	then
4715	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4716	elif [[ $localhost = lccrayb ]]
4717	then
4718	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4719	else
4720	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4721	fi
4722	else
4723	if [[ $localhost = ibmkisti ]]
4724	then
4725	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4726	elif [[ $localhost = lcflow ]]
4727	then
4728	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4729	elif [[ $localhost = lccrayb ]]
4730	then
4731	ssh $usern@blogin1 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4732	else
4733	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4734	fi
4735	fi
4736	else
4737	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4738	locat=restart; exit
4739	fi
4740
4741	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4742	# DER AKTUELLE JOB ENDET
4743	if [[ $queue = special1q ]]
4744	then
4745	sleep 120
4746	else
4747	sleep 30
4748	fi
4749
4750	else
4751
4752	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4753	# RUFEN WERDEN, AUSSER AUF lcfimm
4754	cd $LOCAL_PWD
4755	if [[ $localhost = lcfimm ]]
4756	then
4757	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4758	elif [[ $localhost = lckyuh ]]
4759	then
4760	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4761	printf "\n please restart job manually using command:\n"
4762	printf "\n \"$mc\" "
4763	else
4764	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4765	fi
4766	cd - > /dev/null
4767	fi
4768	if [[ $localhost = lckyuh ]]
4769	then
4770	printf "\n$striche\n *** restart-run to be initiated manually\n"
4771	else
4772	printf "\n$striche\n *** restart-run initiated \n"
4773	fi
4774
4775
4776	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4777	# GEHOLT WORDEN SIND, LOESCHEN
4778	(( i = 0 ))
4779	while (( i < iin ))
4780	do
4781	(( i = i + 1 ))
4782	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4783	then
4784	rm -r $tmp_data_catalog/${frelin[$i]}
4785	fi
4786	done
4787
4788	else
4789
4790	printf "\n +++ no restart-run possible, since errors occured"
4791	printf "\n during the archive process"
4792	fi
4793
4794	fi
4795
4796
4797
4798	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4799	if [[ "$email_notification" != "none" ]]
4800	then
4801
4802	if [[ $localhost != $fromhost ]]
4803	then
4804	if [[ -f CONTINUE_RUN ]]
4805	then
4806	echo "PALM restart run necessary" > email_text
4807	echo "description header of actual run:" >> email_text
4808	cat CONTINUE_RUN >> email_text
4809	echo "mrun-command to restart:" >> email_text
4810	echo "$mc" >> email_text
4811	else
4812	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4813	fi
4814	mail $email_notification < email_text
4815	printf "\n *** email notification sent to \"$email_notification\" "
4816	fi
4817	fi
4818
4819
4820
4821	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4822	cd $HOME
4823	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4824
4825	else
4826
4827
4828	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4829	# CHENDE AKTIONEN DURCHGEFUEHRT
4830
4831	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4832	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4833	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4834	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4835	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4836	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4837	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4838	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4839	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4840	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4841	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4842	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4843	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4844	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4845	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4846	if [[ $use_openmp = true ]]
4847	then
4848	mrun_com=${mrun_com}" -O $threads_per_task"
4849	fi
4850	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4851	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4852	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4853	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4854	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4855	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4856	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4857	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4858	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4859	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4860	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4861	if [[ $do_remote = true ]]
4862	then
4863	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4864	fi
4865
4866
4867	# create executable for batch job
4868	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4869	then
4870
4871	printf "\n *** creating the executable for batch job\n"
4872
4873	# method only works for batch jobs on local hosts
4874	if [[ $host != $localhost ]]
4875	then
4876	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4877	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4878	locat=create_executable; exit
4879	fi
4880
4881	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4882	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4883
4884	cp $make_depository .
4885	tar -xf $make_depository > /dev/null 2>&1
4886	cp ../* . > /dev/null 2>&1
4887
4888	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4889
4890	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4891	then
4892	printf "\n +++ error occured while compiling or linking"
4893	locat=compile
4894	exit
4895	fi
4896
4897	mv a.out ..
4898	cd - > /dev/null 2>&1
4899	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4900
4901	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4902
4903	fi
4904
4905
4906	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4907	jobfile=jobfile.$RANDOM
4908
4909
4910	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4911	echo "mkdir $TEMPDIR" >> $jobfile
4912	echo "cd $TEMPDIR" >> $jobfile
4913
4914
4915	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4916	if [[ $do_trace = true ]]
4917	then
4918	echo "set -x" >> $jobfile
4919	else
4920	echo "set +vx" >> $jobfile
4921	fi
4922
4923
4924	# initialize the environment and load modules
4925	if [[ "$init_cmds" != "" ]]
4926	then
4927	echo "$init_cmds" >> $jobfile
4928	fi
4929	if [[ "$module_calls" != "" ]]
4930	then
4931	echo "$module_calls" >> $jobfile
4932	fi
4933
4934
4935	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4936	# DATEI FUER DEN JOB
4937	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4938	then
4939
4940	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4941	# KOPIEREN
4942	if [[ $restart_run != true ]]
4943	then
4944	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4945	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4946	fi
4947
4948	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4949	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4950	echo "set -x" >> $jobfile
4951	if [[ $host = $localhost ]]
4952	then
4953
4954	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4955	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4956	echo "rsync -av -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4957
4958	else
4959	if [[ $host = ibmkisti ]]
4960	then
4961	# on KISTI's IBM firewall is only opened on interactive node
4962	echo "localdir=\`pwd\`" >> $jobfile
4963	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4964	elif [[ $host = lccrayb ]]
4965	then
4966	echo "localdir=\`pwd\`" >> $jobfile
4967	echo "ssh $SSH_PORTOPT $remote_username@blogin1 \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4968	else
4969	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4970	fi
4971	fi
4972	echo "export SOURCES_COMPLETE=true" >> $jobfile
4973
4974	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4975	# ARBEITSVERZEICHNIS VERSCHIEBEN
4976	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4977	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4978	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4979	echo "execute_mrun=true" >> $jobfile
4980	echo " " >> $jobfile
4981
4982	else
4983
4984	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4985	# SOWIE GEGEBENENFALLS DES MAKEFILES
4986	if [[ $do_compile = true ]]
4987	then
4988
4989	source_catalog=SOURCES_FOR_RUN_$fname
4990
4991	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4992	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4993	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4994	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4995	echo "export SOURCES_COMPLETE=true" >> $jobfile
4996	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4997
4998	for filename in $source_list
4999	do
5000	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5001	echo "cat > $filename << \"%END%\"" >> $jobfile
5002	cat $source_catalog/$filename >> $jobfile
5003	echo " " >> $jobfile
5004	echo "%END%" >> $jobfile
5005	echo " " >> $jobfile
5006	done
5007
5008	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5009	echo "cat > Makefile << \"%END%\"" >> $jobfile
5010	cat $source_catalog/Makefile >> $jobfile
5011	echo " " >> $jobfile
5012	echo "%END%" >> $jobfile
5013	echo " " >> $jobfile
5014
5015	echo "cd - > /dev/null" >> $jobfile
5016
5017	fi
5018
5019
5020	# ABSPEICHERN DER KONFIGURATIONSDATEI
5021	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5022	# Lines with #$ coming from the svn keyword substitution are
5023	# removed from the config file in order to avoid problems
5024	# with the SGE batch system
5025	echo "cat > $config_file << \"%END%\"" >> $jobfile
5026	if [[ $host = lckyuh ]]
5027	then
5028	# no cross compiler on compute node
5029	sed 's/frtpx/frt/g' $config_file >> $jobfile
5030	else
5031	sed 's/#$.*//g' $config_file >> $jobfile
5032	fi
5033	echo "%END%" >> $jobfile
5034	echo " " >> $jobfile
5035
5036
5037	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5038	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5039	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5040	if [[ $host = lckyuh ]]
5041	then
5042	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5043	else
5044	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5045	fi
5046	echo "%END%" >> $jobfile
5047	echo "chmod u+x $mrun_script_name" >> $jobfile
5048	echo "execute_mrun=true" >> $jobfile
5049	echo " " >> $jobfile
5050
5051	fi
5052
5053
5054	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5055	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5056	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5057	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5058	if [[ $do_remote = true ]]
5059	then
5060	(( i = 0 ))
5061	while (( i < iin ))
5062	do
5063	(( i = i + 1 ))
5064	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5065	if [[ "${transin[$i]}" = job ]]
5066	then
5067	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5068	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5069	echo " " >> $jobfile
5070	echo "%END%" >> $jobfile
5071	else
5072	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5073	fi
5074
5075	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5076	echo "if [[ \$? = 1 ]]" >> $jobfile
5077	echo "then" >> $jobfile
5078	echo " echo \" \" " >> $jobfile
5079	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5080	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5081	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5082	echo " execute_mrun=false" >> $jobfile
5083	echo "fi" >> $jobfile
5084	done
5085	fi
5086
5087	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5088	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5089	echo "LOCAL_PWD=$working_directory" >> $jobfile
5090	echo "export LOCAL_PWD" >> $jobfile
5091
5092	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5093	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5094	echo "export LOCAL_MRUN_PATH" >> $jobfile
5095
5096	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5097	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5098	then
5099	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5100	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5101	then
5102	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5103	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5104	fi
5105
5106	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5107	echo "set -x" >> $jobfile
5108	echo "queue=$queue" >> $jobfile
5109	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5110	echo 'ls -al; echo `pwd`' >> $jobfile
5111	echo "cd \$HOME" >> $jobfile
5112	echo "rm -rf $TEMPDIR" >> $jobfile
5113
5114
5115
5116
5117	# JOB PER SUBJOB STARTEN
5118	if [[ $silent = false ]]
5119	then
5120	printf "\n "
5121	else
5122	printf "\n\n"
5123	fi
5124
5125	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5126	rm -rf $jobfile
5127
5128
5129	fi # ENDE REMOTE-TEIL
5130
5131
5132
5133	# ENDE DER PROZEDUR

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