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source: palm/trunk/SCRIPTS/mrun @ 1222

Last change on this file since 1222 was 1211, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1211 2013-08-14 13:46:36Z raasch $
29	#
30	# 1210 2013-08-14 10:58:20Z raasch
31	# fftw support added
32	#
33	# 1201 2013-07-10 16:17:59Z witha
34	# adjustments for Forwind cluster (lcflow)
35	#
36	# 1199 2013-07-05 14:52:22Z raasch
37	# adjustments for CSC Helsinki (lccrayf),
38	# executables for batch jobs can be created in advance, in order to avoid calling
39	# the compiler within the batch job (only works if batch jobs are submitted on
40	# local host)
41	#
42	# 1190 2013-06-25 09:39:21Z heinze
43	# enable use of automatic restarts for ibmh
44	# use of cluster/express queue enabled (ibmh)
45	#
46	# 1124 2013-04-09 15:46:52Z raasch
47	# variable "memory" is exported via typeset option -x, because otherwise an unknown
48	# side effect may lead to data loss while getopts is reading the script-option arguments
49	#
50	# 1122 2013-04-09 08:37:16Z heinze
51	# Bugfix: change type of variable last_char
52	#
53	# 1119 2013-04-05 15:11:19Z raasch
54	# Bugfix for setting -T option for subjob
55	#
56	# 1108 2013-03-05 07:03:32Z raasch
57	# bugfix for coupled runs on lckyut/lckyuh
58	#
59	# 1106 2013-03-04 05:31:38Z raasch
60	# --stdin argument for mpiexec on lckyuh
61	# -y and -Y settings output to header
62	#
63	# 1103 2013-02-20 02:15:53Z raasch
64	# default script runs again under ksh, because of unsolved problems with read
65	# from stdin: when bash script is called from a ksh, message "read error: 0:
66	# Resource temporarily unavailable" appears and script does not stop,
67	# further bash compatibility adjustments,
68	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
69	# on lckyuh, but mrun does not terminate and issues a warning instead
70	#
71	# 1101 2013-02-17 10:20:21Z raasch
72	# script now running under bash instead of ksh, which required small adjustments
73	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
74	# read from stdin),
75	# cross compilername on lckyuh compute nodes replaced by real compiler name
76	#
77	# 1099 2013-02-10 01:47:43Z raasch
78	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
79	# and for Forwind cluster (lcflow)
80	# small further adjustments for lckyut
81	#
82	# 1094 2013-02-03 01:52:12Z raasch
83	# explicit ssh/scp port can be set in config file with environment variable
84	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
85	# decalpha parts (yonsei) removed
86	#
87	# 2013-02-02 07:06:13Z raasch
88	# adjustments for Kyushu-University computing center (lckyut - tatara)
89	#
90	# 1083 2013-01-04 10:22:09Z maronga
91	# bugfix in parameter file check (read %cpp_options was missing)
92	#
93	# 1069 2012-11-28 16:18:43Z maronga
94	# bugfix: coupling mode was always set to mpi2, typos removed
95	#
96	# 1058 2012-11-21 07:00:35Z raasch
97	# Intel inspector (inspxe) is given the number of PEs instead of the number of
98	# nodes
99	#
100	# 1046 2012-11-09 14:38:45Z maronga
101	# code put under GPL (PALM 3.9)
102	#
103	# 21/03/94 - Siggi - first version finished
104	# 03/03/94 - Siggi - script development started
105	#
106	#--------------------------------------------------------------------------------#
107	# mrun - script for running PALM jobs
108	#--------------------------------------------------------------------------------#
109
110
111
112	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
113
114	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
115	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
116	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
117
118	AddFilenames=""
119	additional_conditions=""
120	add_source_path=""
121	afname=""
122	archive_save=true
123	archive_system=none
124	check_namelist_files=true
125	combine_plot_fields=true
126	compiler_name=""
127	cond1=""
128	cond2=""
129	config_file=.mrun.config
130	coupled_dist=""
131	coupled_mode="mpi1"
132	cpp_opts=""
133	cpp_options=""
134	cpumax=0
135	cpurest=0
136	create_executable_for_batch=false
137	delete_temporary_catalog=true
138	do_batch=false
139	do_compile=true
140	do_remote=false
141	do_stagein=true
142	do_stageout=true
143	do_trace=false
144	email_notification="none"
145	exclude=""
146	executable=""
147	execution_error=false
148	fftw_inc=""
149	fftw_lib=""
150	fftw_support=false
151	fimm=false
152	fname=test
153	fromhost=""
154	global_revision=""
155	group_number=none
156	host=""
157	host_file=""
158	hp=""
159	ignore_archive_error=false
160	input_list=""
161	interpreted_config_file=""
162	job_catalog="~/job_queue"
163	job_on_file=""
164	keep_data_from_previous_run=false
165	link_local_input=false
166	link_local_output=false
167	localhost_realname=$(hostname)
168	local_compile=false
169	local_dvrserver_running=.FALSE.
170	locat=normal
171	mainprog=""
172	makefile=""
173	max_par_io_str=""
174	mc=$0
175	while [[ $(echo $mc \| grep -c "/") != 0 ]]
176	do
177	mc=`echo $mc \| cut -f2- -d"/"`
178	done
179	module_calls=""
180	mrun_script_name=$mc
181	netcdf_inc=""
182	netcdf_lib=""
183	netcdf_support=false
184	node_usage=default
185	numprocs=""
186	numprocs_atmos=0
187	numprocs_ocean=0
188	OOPT=""
189	openmp=false
190	output_list=""
191	package_list=""
192	punkte="..........................................................."
193	queue=none
194	read_from_config=""
195	restart_run=false
196	if [[ `hostname` = rte10 ]]
197	then
198	return_addres=133.5.185.60
199	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
200	elif [[ `hostname` = climate0 ]]
201	then
202	return_addres=165.132.26.68
203	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
204	elif [[ `hostname` = urban00 ]]
205	then
206	return_addres=147.46.30.151
207	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
208	else
209	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
210	fi
211	return_password=""
212	return_username=$LOGNAME
213	remotecall=false
214	remote_username=""
215	run_coupled_model=false
216	run_mode=""
217	scirocco=false
218	store_on_archive_system=false
219	striche=" ----------------------------------------------------------------------------"
220	silent=false
221	source_list=""
222	source_path=SOURCE
223	tasks_per_node=""
224	threads_per_task=1
225	tmpcreate=false
226	tmp_data_catalog=""
227	transfer_problems=false
228	usern=$LOGNAME
229	use_openmp=false
230	version="MRUN 2.0 Rev$Rev: 1211 $"
231	working_directory=`pwd`
232	TOPT=""
233	XOPT=""
234	zeit=$( date \| cut -c 12-19 )
235
236	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
237	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
238	# effect may cause data loss when getopts is reading the
239	# script-option arguments
240	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
241
242
243
244
245	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
246	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
247
248	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
249	# EXPORTIERT WERDEN
250	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
251	export group_number input_list numprocs output_list queue run_mode
252
253
254
255	# FEHLERBEHANDLUNG
256	# BEI EXIT:
257	trap 'rm -rf $working_directory/tmp_mrun
258	if [[ $locat != localhost ]]
259	then
260	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
261	# then
262	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
263	#MRUN-calls on $localhost
264	#
265	#date and time user localhost remotehost termination mrun-command
266	#--------------------------------------------------------------------------------------------------------------------
267	#%STATEND%
268	# chmod 666 ${mrun_path}/statistik/mrun_statistik
269	# fi
270	#
271	# # EINTRAG IN DIE STATISTIK-DATEI
272	# string1=`date` #-L35
273	# string2=$usern #-L12
274	# string3=$localhost_realname #-L12
275	# string4=$host #-L12
276	# string5=$locat #-L12
277	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
278	# then
279	# if [[ $do_batch = true ]]
280	# then
281	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
282	# else
283	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
284	# fi
285	# fi
286	echo " " > /dev/null
287	fi
288
289	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
290	then
291
292	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
293	(( i = 0 ))
294	while (( i < iec ))
295	do
296	(( i = i + 1 ))
297	printf "\n *** Execution of ERROR-command:\n"
298	printf " >>> ${err_command[$i]}\n"
299	eval ${err_command[$i]}
300	done
301	if [[ -n $interpreted_config_file ]]
302	then
303	rm -rf $interpreted_config_file
304	fi
305	if [[ -n .mrun_environment ]]
306	then
307	rm -rf .mrun_environment
308	fi
309	if [[ $tmpcreate = true ]]
310	then
311	printf "\n *** Contents of \"$TEMPDIR\":\n"
312	ls -al; cd
313	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
314	fi
315	if [[ "$dvrserver_id" != "" ]]
316	then
317	echo "+++ killing dvrserver_id=$dvrserver_id"
318	kill $dvrserver_id
319	fi
320	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
321	then
322	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
323	fi
324	printf "\n\n+++ MRUN killed \n\n"
325	elif [[ $locat != control_c ]]
326	then
327	printf "\n\n --> all actions finished\n\n"
328	printf " Bye, bye $usern !!\n\n"
329	fi' exit
330
331
332	# BEI TERMINAL-BREAK:
333	trap 'rm -rf $working_directory/tmp_mrun
334	rm -rf $working_directory/tmp_check_namelist_files
335	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
336	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
337	then
338	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
339	fi
340	if [[ "$dvrserver_id" != "" ]]
341	then
342	echo "+++ killing dvrserver_id=$dvrserver_id"
343	kill $dvrserver_id
344	fi
345	printf "\n+++ MRUN killed by \"^C\" \n\n"
346	locat=control_c
347	exit
348	' 2
349
350
351	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
352	# BEEN SET
353	if [[ "$PALM_BIN" = "" ]]
354	then
355	printf "\n +++ environment variable PALM_BIN has not been set"
356	printf "\n please set it to the directory where the PALM scripts are located"
357	locat=palm_bin; exit
358	fi
359	export PATH=$PALM_BIN:$PATH
360
361
362
363	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
364	# FUER FOLGEJOBS BENOETIGT WIRD
365	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
366	do
367	case $option in
368	(a) afname=$OPTARG;;
369	(A) store_on_archive_system=true; mc="$mc -A";;
370	(b) do_batch=true; mc="$mc -b";;
371	(B) delete_temporary_catalog=false; mc="$mc -B";;
372	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
373	(C) restart_run=true; mc="$mc -C";;
374	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
375	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
376	(F) job_on_file="-D"; mc="$mc -F";;
377	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
378	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
379	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
380	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
381	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
382	(I) ignore_archive_error=true; mc="$mc -I";;
383	(k) keep_data_from_previous_run=true; mc="$mc -k";;
384	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
385	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
386	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
387	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
388	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
389	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
390	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
391	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
392	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
393	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
394	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
395	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
396	(S) read_from_config=false; mc="$mc -S";;
397	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
398	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
399	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
400	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
401	(v) silent=true; mc="$mc -v";;
402	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
403	(x) do_trace=true;set -x; mc="$mc -x";;
404	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
405	(y) ocean_file_appendix=true; mc="$mc -y";;
406	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
407	(z) check_namelist_files=false; mc="$mc -z";;
408	(Z) combine_plot_fields=false; mc="$mc -Z";;
409	(\?) printf "\n +++ unknown option $OPTARG \n"
410	printf "\n --> type \"$0 ?\" for available options \n"
411	locat=parameter;exit;;
412	esac
413	done
414
415
416	# EVTL. POSITIONSPARAMETER EINLESEN
417	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
418	(( to_shift = $OPTIND - 1 ))
419	shift $to_shift
420
421	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
422	if [[ "$1" = "?" ]]
423	then
424	(printf "\n *** mrun can be called as follows:\n"
425	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
426	printf "\n Description of available options:\n"
427	printf "\n Option Description Default-Value"
428	printf "\n -a base name of input files equiv. -d"
429	printf "\n -A archiving when using file-attribute fl"
430	printf "\n -b batch-job on local machine ---"
431	printf "\n -B do not delete temporary directory at end ---"
432	printf "\n -c configuration file .mrun.config"
433	printf "\n -d base name of files attached to program test"
434	printf "\n -D preprocessor(cpp)-directives \"\" "
435	printf "\n -F create remote job file only ---"
436	printf "\n -h execution host $localhost_realname"
437	printf "\n -i INPUT control list \"\" "
438	printf "\n -I archiving errors of previous batch-jobs"
439	printf "\n will be ignored"
440	printf "\n -k keep data from previous run"
441	printf "\n -K additional conditions for controling"
442	printf "\n usage of conditional code and"
443	printf "\n env-variables in configuration file \"\" "
444	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
445	printf "\n -M Makefile name Makefile"
446	printf "\n -n node usage (shared/not_shared) depending on -h"
447	printf "\n -o OUTPUT control list \"\" "
448	printf "\n -O use OpenMP ---"
449	printf "\n -p software package list \"\" "
450	printf "\n -q queue \"$queue\" "
451	printf "\n -r run control list (combines -i -o) \"\" "
452	printf "\n -s filenames of routines to be compiled \"\" "
453	printf "\n must end with .f, .f90, .F, or .c !"
454	printf "\n use \"..\" for more than one file and wildcards"
455	printf "\n -s LM compiles all locally modified files"
456	printf "\n -S config file interpreted by shellscript ---"
457	printf "\n -t allowed cpu-time in seconds (batch) 0"
458	printf "\n -T tasks per node depending on -h"
459	printf "\n -u username on remote machine \"\" "
460	printf "\n -v no prompt for confirmation ---"
461	printf "\n -w maximum parallel io streams as given by -X"
462	printf "\n -x tracing of mrun for debug purposes ---"
463	printf "\n -X # of processors (on parallel machines) 1"
464	printf "\n -y add appendix \"_O\" to all local output"
465	printf "\n files (ocean precursor runs followed by"
466	printf "\n coupled atmosphere-ocean runs) ---"
467	printf "\n -Y run coupled model, \"#1 #2\" with"
468	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
469	printf "\n -z disable a priori parameter file check ---"
470	printf "\n -Z skip combine_plot_fields at the end of "
471	printf "\n the simulation ---"
472	printf "\n "
473	printf "\n Possible values of positional parameter <modus>:"
474	printf "\n \"?\" - this outline \n\n") \| more
475	exit
476	elif [[ "$1" != "" ]]
477	then
478	printf "\n +++ positional parameter $1 unknown \n"
479	locat=parameter; exit
480	fi
481
482
483
484	# KURZE STARTMELDUNG
485	printf "\n*** $version "
486	printf "\n will be executed. Please wait ..."
487
488
489
490	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
491	if [[ ! -f $config_file ]]
492	then
493	printf "\n\n +++ configuration file: "
494	printf "\n $config_file"
495	printf "\n does not exist"
496	locat=connect; exit
497	fi
498
499
500	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
501	line=""
502	grep "%host_identifier" $config_file > tmp_mrun
503	while read line
504	do
505	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
506	then
507	HOSTNAME=`echo $line \| cut -d" " -s -f2`
508	host_identifier=`echo $line \| cut -d" " -s -f3`
509	if [[ $localhost_realname = $HOSTNAME ]]
510	then
511	localhost=$host_identifier
512	break
513	fi
514	fi
515	done < tmp_mrun
516
517	if [[ "$localhost" = "" ]]
518	then
519	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
520	printf "\n for local host \"$localhost_realname\"."
521	printf "\n Please add line"
522	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
523	printf "\n to the configuration file."
524	locat=localhost; exit
525	fi
526
527
528	# HOSTSPEZIFISCHE VARIABLEN SETZEN
529	case $localhost_realname in
530	(r1\|r2\|h01\|b01) archive_system=tivoli;;
531	(cs*) archive_system=ut;;
532	(fimm.bccs.uib.no) fimm=true;;
533	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
534	(scirocco) scirocco=true;;
535	esac
536
537
538
539	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
540	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
541	[[ "$afname" = "" ]] && afname=$fname
542
543
544	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
545	if [[ "$run_mode" != "" ]]
546	then
547	input_list="$input_list $run_mode"
548	output_list="$output_list $run_mode"
549	fi
550
551
552	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
553	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
554	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
555	# STARTET)
556	if [[ "$fromhost" = "" ]]
557	then
558	fromhost=$localhost
559	fi
560
561
562	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
563	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
564	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
565	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
566	if [[ -n $host && "$host" != $localhost ]]
567	then
568	do_batch=true
569	do_remote=true
570	case $host in
571	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
572	(*) printf "\n"
573	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
574	printf "\n is not available"
575	locat=nqs; (( iec = 0 )); exit;;
576	esac
577	else
578	host=$localhost
579	fi
580
581
582	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
583	if [[ -n $additional_conditions ]]
584	then
585	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
586	cond1=`echo $additional_conditions \| cut -d" " -f1`
587	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
588	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
589	if [[ -n $dummy ]]
590	then
591	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
592	locat=options; exit
593	fi
594	block=_$cond1
595	[[ -n $cond2 ]] && block=${block}_$cond2
596	fi
597
598
599	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
600	if [[ $run_coupled_model = true ]]
601	then
602
603	if [[ -n $coupled_dist ]]
604	then
605
606	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
607	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
608
609	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
610	then
611
612	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
613	printf "\n PEs (total) : $numprocs"
614	printf "\n PEs (atmosphere): $numprocs_atmos"
615	printf "\n PEs (ocean) : $numprocs_ocean"
616	locat=coupling; exit
617
618	fi
619
620	else
621
622	(( numprocs_ocean = $numprocs / 2 ))
623	(( numprocs_atmos = $numprocs / 2 ))
624
625	fi
626	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
627
628	# GET coupled_mode FROM THE CONFIG FILE
629	line=""
630	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
631	while read line
632	do
633	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
634	then
635	coupled_mode="mpi2"
636	fi
637	done < tmp_mrun
638
639	fi
640
641
642	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
643	# ARCHIVIERUNG FEHLGESCHLAGEN IST
644	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
645	then
646	if [[ $ignore_archive_error = false ]]
647	then
648	printf "\n +++ data archiving of previous run failed"
649	printf "\n see directory \~/job_queue on remote machine"
650	locat=archive; exit
651	else
652	printf "\n +++ warning: data archiving in a previous run failed"
653	printf "\n MRUN continues, trying to get backup copy"
654	fi
655	fi
656
657
658	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
659	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
660	mrun_memory=$memory
661	mrun_group_number=$group_number
662	mrun_cpumax=$cpumax
663	mrun_numprocs=$numprocs
664
665
666	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
667	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
668	if [[ "$read_from_config" = false ]]
669	then
670
671	[[ $silent = false ]] && printf "\n Reading the configuration file... "
672	while read zeile
673	do
674	[[ $silent = false ]] && printf "."
675
676
677	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
678	# ERSETZEN
679	eval zeile=\"$zeile\"
680
681
682	# INTERPRETATION DER ZEILE
683	if [[ "$(echo $zeile)" = "" ]]
684	then
685	# LEERZEILE, KEINE AKTION
686	continue
687
688	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
689	then
690
691	# ZEILE IST KOMMENTARZEILE
692	true
693
694	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
695	then
696
697	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
698	zeile=$(echo $zeile \| cut -c2-)
699	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
700	var=`echo $zeile \| cut -d" " -f1`
701	value=`echo $zeile \| cut -d" " -s -f2`
702	for_host=`echo $zeile \| cut -d" " -s -f3`
703	for_cond1=`echo $zeile \| cut -d" " -s -f4`
704	for_cond2=`echo $zeile \| cut -d" " -s -f5`
705
706	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
707	then
708
709	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
710	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
711	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
712
713
714	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
715	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
716	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
717	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
718	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
719	# KONFIGURATIONSDATEI
720	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
721	then
722	eval $var=\$value
723
724	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
725	if [[ $do_trace = true ]]
726	then
727	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
728	fi
729	fi
730
731	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
732	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
733	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
734	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
735	if [[ $var = host ]]
736	then
737	if [[ -n $host && "$host" != $localhost ]]
738	then
739	do_batch=true
740	do_remote=true
741	case $host in
742	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
743	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
744	printf "\n is not available"
745	locat=nqs; exit;;
746	esac
747	else
748	host=$localhost
749	fi
750	fi
751
752	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
753	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
754	# DEN PROGRAMMEN BENOETIGT WERDEN
755	export $var
756	fi
757
758
759
760
761	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
762	then
763
764	# ZEILE DEFINIERT ERROR-KOMMANDO
765	(( iec = iec + 1 ))
766	zeile=$(echo $zeile \| cut -c4-)
767	err_command[$iec]="$zeile"
768
769	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
770	then
771
772	# ZEILE DEFINIERT INPUT-KOMMANDO
773	(( iic = iic + 1 ))
774	zeile=$(echo $zeile \| cut -c4-)
775	in_command[$iic]="$zeile"
776
777	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
778	then
779
780	# ZEILE DEFINIERT OUTPUT-KOMMANDO
781	(( ioc = ioc + 1 ))
782	zeile=$(echo $zeile \| cut -c4-)
783	out_command[$ioc]="$zeile"
784
785	else
786
787	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
788	# s2a: in/out - Feld
789	# s2b: loc - Feld (optional)
790	# s2c: tr/ar - Feld (optional)
791	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
792	s1=`echo $zeile \| cut -d" " -f1`
793	s2=`echo $zeile \| cut -d" " -s -f2`
794	s2a=$(echo $s2 \| cut -d":" -f1)
795	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
796	then
797	s2b=""
798	s2c=""
799	else
800	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
801	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
802	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
803	fi
804	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
805	s3=`echo $zeile \| cut -d" " -f3`
806	s4=`echo $zeile \| cut -d" " -s -f4`
807	s5=`echo $zeile \| cut -d" " -s -f5`
808	s6=`echo $zeile \| cut -d" " -s -f6`
809
810
811	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
812	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
813	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
814	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
815	# HANDEN SEIN MUSS (D.H. s2b = loc)
816	IFSALT="$IFS"; IFS="$IFS:"
817	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
818	then
819	found=false
820	for actual in $input_list
821	do
822	for formal in $s3
823	do
824	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
825	done
826	done
827	if [[ $found = true ]]
828	then
829	(( iin = iin + 1 ))
830	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
831	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
832	extin[$iin]=$s6
833	fi
834	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
835	then
836	found=false
837	for actual in $output_list
838	do
839	for formal in $s3
840	do
841	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
842	done
843	done
844	if [[ $found = true ]]
845	then
846	(( iout = iout + 1 ))
847	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
848	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
849	fi
850	elif [[ "$s2a" != in && "$s2a" != out ]]
851	then
852	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
853	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
854	locat=connect; exit
855	fi
856	IFS="$IFSALT"
857	fi
858	done < $config_file
859
860	else
861
862
863	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
864	[[ $silent = false ]] && printf "..."
865	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
866	export interpreted_config_file=.icf.$RANDOM
867
868
869
870	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
871	# VERFUEGUNG STELLEN
872	cat > .mrun_environment << %%END%%
873	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
874	config_file = '$config_file', do_remote = '$do_remote',
875	do_trace = '$do_trace', host = '$host',
876	input_list = '$input_list', icf = '$interpreted_config_file',
877	localhost = '$localhost', output_list = '$output_list' /
878
879	%%END%%
880
881	if [[ $localhost_realname = "sx-fep" ]]
882	then
883	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
884	else
885
886	if [[ "$host" != $localhost ]]
887	then
888
889	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
890	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
891	if [[ $? != 0 ]]
892	then
893	printf "\n\n +++ no interpret_config found"
894	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
895	locat=interpret_config; exit
896	fi
897	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
898	$interpret_config_executable
899
900	else
901
902	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
903	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
904	then
905	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
906	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
907	locat=interpret_config; exit
908	else
909	interpret_config${block}.x
910	fi
911
912	fi
913	fi
914	rm .mrun_environment
915
916
917	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
918	chmod u+x $interpreted_config_file
919	export PATH=$PATH:.
920	. $interpreted_config_file
921	rm $interpreted_config_file
922
923	fi
924
925
926	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
927	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
928	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
929	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
930	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
931	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
932	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
933
934
935	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
936	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
937	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
938	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
939	if [[ "$SOURCES_COMPLETE" = "" ]]
940	then
941
942	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
943	# VEREINBART WURDE
944	source_path=""
945	line=""
946	grep "%source_path" $config_file > tmp_mrun
947	while read line
948	do
949	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
950	then
951	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
952	then
953	global_source_path=`echo $line \| cut -d" " -f2`
954	fi
955	fi
956	done < tmp_mrun
957
958	line=""
959	found=false
960	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
961	while read line
962	do
963	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
964	then
965	if [[ $found = true ]]
966	then
967	printf "\n\n +++ more than one source path found in configuration file"
968	printf "\n for local host \"$localhost\" "
969	locat=source_path; exit
970	fi
971	source_path=`echo $line \| cut -d" " -f2`
972	found=true
973	fi
974	done < tmp_mrun
975	rm tmp_mrun
976
977	if [[ "$source_path" = "" ]]
978	then
979	if [[ "$global_source_path" != "" ]]
980	then
981	source_path=$global_source_path
982	else
983	printf "\n\n +++ no source path found in configuration file"
984	printf "\n for local host \"$localhost\" "
985	locat=source_path; exit
986	fi
987	fi
988	eval source_path=$source_path
989
990	if [[ ! -d $source_path ]]
991	then
992	printf "\n\n +++ source path \"$source_path\" on local host"
993	printf "\n \"$localhost\" does not exist"
994	locat=source_path; exit
995	fi
996
997	fi
998
999
1000	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1001	# DURCH OPTION -G MITGETEILT)
1002	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1003	then
1004	global_revision=`svnversion $source_path 2>/dev/null`
1005	global_revision="Rev: $global_revision"
1006	fi
1007
1008
1009	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1010	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1011	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1012	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1013	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1014	if [[ -n $host && "$host" != $localhost ]]
1015	then
1016	do_batch=true
1017	do_remote=true
1018	case $host in
1019	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1020	(*) printf "\n"
1021	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1022	printf "\n is not available"
1023	locat=nqs; (( iec = 0 )); exit;;
1024	esac
1025	else
1026	host=$localhost
1027	fi
1028
1029
1030	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1031	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1032	then
1033
1034	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1035	if [[ ! -n $numprocs ]]
1036	then
1037	printf "\n"
1038	printf "\n +++ option \"-K parallel\" requires additional specification"
1039	printf "\n of the number of processors to be used by"
1040	printf "\n mrun-option \"-X\" or by environment-variable"
1041	printf "\n \"numprocs\" in the configuration file"
1042	locat=numprocs; (( iec = 0 )); exit
1043	fi
1044
1045	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1046	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1047	# GESAMTPROZESSORANZAHL IST
1048	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1049	then
1050	printf "\n"
1051	printf "\n +++ option \"-T\" (tasks per node) is missing"
1052	printf "\n set -T option or define tasks_per_node in the config file"
1053	locat=tasks_per_node; (( iec = 0 )); exit
1054	fi
1055	if [[ $host != lcflow && $host != lcxt5m ]]
1056	then
1057	(( ival = $tasks_per_node ))
1058	(( pes = numprocs ))
1059	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1060	# then
1061	# (( pes = pes - 1 ))
1062	# fi
1063	(( ii = pes / ival ))
1064	if (( pes - ii * ival > 0 ))
1065	then
1066	printf "\n"
1067	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1068	printf "\n divisor of the total number of processors (option \"-X\")"
1069	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1070	locat=tasks_per_node; (( iec = 0 )); exit
1071	fi
1072	fi
1073
1074
1075	# IBMY HAT NUR EINEN KNOTEN
1076	if [[ $host = ibmy ]]
1077	then
1078	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1079	then
1080	printf "\n"
1081	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1082	printf "\n total number of processors (option \"-X\")"
1083	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1084	locat=tasks_per_node; (( iec = 0 )); exit
1085	fi
1086	fi
1087
1088
1089	# SETTINGS FOR SUBJOB-COMMAND
1090	OOPT="-O $threads_per_task"
1091
1092	# GESAMTZAHL DER KNOTEN BESTIMMEN
1093	if [[ "$tasks_per_node" != "" ]]
1094	then
1095	TOPT="-T $tasks_per_node"
1096	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1097	fi
1098
1099	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1100	# SETZEN
1101	if [[ $node_usage = default ]]
1102	then
1103	if [[ $host = ibms ]]
1104	then
1105	node_usage=shared
1106	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1107	then
1108	node_usage=singlejob
1109	else
1110	node_usage=not_shared
1111	fi
1112	fi
1113
1114	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1115	then
1116	printf "\n"
1117	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1118	printf "\n \"shared\" or \"not_shared\""
1119	locat=tasks_per_node; (( iec = 0 )); exit
1120	fi
1121
1122	fi
1123
1124	# PRUEFEN, OB HOSTFILE EXISTIERT
1125	if [[ -n $hostfile ]]
1126	then
1127	if [[ ! -f $hostfile ]]
1128	then
1129	printf "\n"
1130	printf "\n +++ hostfile \"$hostfile\" does not exist"
1131	locat=hostfile; exit
1132	fi
1133	fi
1134
1135	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1136	if [[ $host = ibmy && $do_remote = false ]]
1137	then
1138	if [[ ! -f $HOME/.rhosts ]]
1139	then
1140	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1141	printf "\n\n *** file:"
1142	printf "\n $HOME/.rhosts"
1143	printf "\n was created\n"
1144	fi
1145	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1146	then
1147	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1148	printf "\n\n *** file:"
1149	printf "\n $HOME/.rhosts"
1150	printf "\n was extended by the name of the current host\n"
1151	fi
1152	fi
1153
1154
1155	# Set default value for the maximum number of parallel io streams
1156	if [[ "$maximum_parallel_io_streams" = "" ]]
1157	then
1158	maximum_parallel_io_streams=$numprocs
1159	fi
1160
1161
1162	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1163	if [[ "$scp_port" != "" ]]
1164	then
1165	PORTOPT="-P $scp_port"
1166	SSH_PORTOPT="-p $scp_port"
1167	fi
1168
1169
1170	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1171	if [[ $queue = none ]]
1172	then
1173	case $host in
1174	(ibmh) queue=cluster;;
1175	(ibmkisti) queue=class.32plus;;
1176	(ibmy) queue=parallel;;
1177	(lckiaps) queue=normal;;
1178	(lckyoto) queue=ph;;
1179	(lckyuh) queue=fx-single;;
1180	(lckyut) queue=cx-single;;
1181	(lcsgib) queue=testq;;
1182	(lcsgih) queue=testq;;
1183	(lctit) queue=S;;
1184	(nech) queue=none;;
1185	(necriam) queue=SP;;
1186	(unics) queue=unics;;
1187	esac
1188	fi
1189
1190
1191	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1192	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1193	# ERMITTELN
1194	(( i = 0 ))
1195	while (( i < iin ))
1196	do
1197	(( i = i + 1 ))
1198	(( maxcycle = 0 ))
1199
1200	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1201	if [[ "${actionin[$i]}" = di ]]
1202	then
1203	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1204	# REM-MASCHINE AUSWERTEN
1205	eval filename=${pathin[$i]}/${endin[$i]}
1206	else
1207	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1208	# REM-MASCHINE AUSWERTEN
1209	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1210	fi
1211	eval pathname=${pathin[$i]}
1212
1213	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1214	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1215	then
1216	filename_input=$filename
1217	fi
1218
1219	# PRUEFEN AUF VORHANDENSEIN
1220	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1221	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1222	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1223	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1224	then
1225	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1226	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1227	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1228	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1229	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1230	if [[ "${transin[$i]}" != "locopt" ]]
1231	then
1232	printf "\n\n +++ INPUT-file: "
1233	if [[ "${extin[$i]}" = "" ]]
1234	then
1235	printf "\n $filename"
1236	else
1237	printf "\n $filename.${extin[$i]}"
1238	fi
1239	printf "\n does not exist\n"
1240	locat=input; exit
1241	else
1242	transin[$i]="unavailable"
1243	fi
1244	else
1245
1246	# ZYKLUSNUMMER FESTSTELLEN
1247	ls -1 -d $filename > filelist 2>/dev/null
1248	ls -1 -d $filename.* >> filelist 2>/dev/null
1249	while read zeile
1250	do
1251	cycle=$(echo $zeile \| cut -f2 -d".")
1252	if [[ "$cycle" = "$zeile" ]]
1253	then
1254	(( icycle = 0 ))
1255	elif [[ "$cycle" = "${extin[$i]}" ]]
1256	then
1257	(( icycle = 0 ))
1258	else
1259	(( icycle = $cycle ))
1260	fi
1261	if (( icycle > maxcycle ))
1262	then
1263	(( maxcycle = icycle ))
1264	file_to_be_used=$zeile
1265	fi
1266	done <filelist
1267	rm filelist
1268
1269	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1270	if (( maxcycle > 0 ))
1271	then
1272	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1273	then
1274	filename=${filename}.$maxcycle.${extin[$i]}
1275	else
1276	filename=${filename}.$maxcycle
1277	fi
1278	else
1279	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1280	then
1281	filename=${filename}.${extin[$i]}
1282	fi
1283	fi
1284
1285	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1286	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1287	absnamein[$i]=$filename
1288	if (( maxcycle > 0 ))
1289	then
1290	if [[ "${actionin[$i]}" = di ]]
1291	then
1292	frelin[$i]=${endin[$i]}.$maxcycle
1293	else
1294	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1295	fi
1296	else
1297	if [[ "${actionin[$i]}" = di ]]
1298	then
1299	frelin[$i]=${endin[$i]}
1300	else
1301	frelin[$i]=${afname}${endin[$i]}
1302	fi
1303	fi
1304
1305	fi
1306	done
1307
1308	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1309	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1310	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1311	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1312	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1313	(( i = 0 ))
1314	while (( i < iout ))
1315	do
1316	(( i = i + 1 ))
1317	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1318	then
1319	if [[ "${actionout[$i]}" = tr ]]
1320	then
1321	actionout[$i]=""
1322	elif [[ "${actionout[$i]}" = trpe ]]
1323	then
1324	actionout[$i]=pe
1325	elif [[ "${actionout[$i]}" = tra ]]
1326	then
1327	actionout[$i]=a
1328	fi
1329	(( maxcycle = 0 ))
1330	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1331	eval catalogname=${pathout[$i]}
1332	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1333	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1334	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1335	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1336	then
1337
1338	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1339	if cat /dev/null > $filename
1340	then
1341	rm $filename
1342	else
1343
1344	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1345	if [[ ! -d $catalogname ]]
1346	then
1347	if mkdir -p $catalogname
1348	then
1349	printf "\n\n *** directory:"
1350	printf "\n $catalogname"
1351	printf "\n was created\n"
1352	else
1353	printf "\n\n +++ OUTPUT-file:"
1354	printf "\n $filename"
1355	printf "\n cannot be created, because directory does not exist"
1356	printf "\n and cannot be created either"
1357	printf "\n"
1358	locat=output ; exit
1359	fi 2>/dev/null
1360	else
1361	printf "\n\n +++ OUTPUT-file:"
1362	printf "\n $filename"
1363	printf "\n cannot be created, although directory exists"
1364	printf "\n"
1365	locat=output ; exit
1366	fi
1367	fi 2>/dev/null
1368	else
1369
1370	# ZYKLUSNUMMER FESTSTELLEN
1371	ls -1 -d $filename > filelist 2>/dev/null
1372	ls -1 -d $filename.* >> filelist 2>/dev/null
1373	while read zeile
1374	do
1375	cycle=$(echo $zeile \| cut -f2 -d".")
1376	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1377	then
1378	(( icycle = 1 ))
1379	else
1380	(( icycle = $cycle + 1 ))
1381	fi
1382	if (( icycle > maxcycle ))
1383	then
1384	(( maxcycle = icycle ))
1385	fi
1386	done <filelist
1387	rm filelist
1388	fi
1389
1390	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1391	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1392	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1393	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1394	if [[ "${actionout[$i]}" != a ]]
1395	then
1396	if (( maxcycle > 0 ))
1397	then
1398	filename=${filename}.$maxcycle
1399	if cat /dev/null > $filename
1400	then
1401	rm $filename
1402	else
1403	printf "\n +++ OUTPUT-file:"
1404	printf "\n $filename"
1405	printf "\n cannot be created"
1406	locat=output ; exit
1407	fi
1408	fi
1409	else
1410	(( maxcycle = maxcycle - 1 ))
1411	if (( maxcycle > 0 ))
1412	then
1413	filename=${filename}.$maxcycle
1414	fi
1415	fi
1416
1417	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1418	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1419	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1420	pathout[$i]=$filename
1421	if (( maxcycle > 0 ))
1422	then
1423	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1424	else
1425	frelout[$i]=${fname}${endout[$i]}
1426	fi
1427
1428	fi
1429	done
1430
1431
1432	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1433	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1434	then
1435	if [[ "$dvr_inc" = "" ]]
1436	then
1437	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1438	printf "\n This is required for the dvrp_graphics package.\n"
1439	locat=dvr; exit
1440	fi
1441	if [[ "$dvr_lib" = "" ]]
1442	then
1443	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1444	printf "\n This is required for the dvrp_graphics package.\n"
1445	locat=dvr; exit
1446	fi
1447	fi
1448
1449
1450	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1451	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1452	# UEBERSETZT ZU WERDEN)
1453	if [[ "$mainprog" = "" && "$executable" = "" ]]
1454	then
1455	printf "\n +++ neither main program nor executable defined"
1456	locat=source; exit
1457	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1458	then
1459	printf "\n +++ main program as well as executable defined"
1460	locat=source; exit
1461	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1462	then
1463	do_compile=false
1464	fi
1465
1466
1467	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1468	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1469	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1470	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1471	then
1472	rm -rf SOURCES_FOR_RUN_$fname
1473	mkdir SOURCES_FOR_RUN_$fname
1474	fi
1475
1476
1477	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1478	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1479	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1480	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1481	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1482	then
1483
1484	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1485
1486	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1487	then
1488
1489	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1490	source_list=""
1491	cd $source_path
1492
1493
1494	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1495	if [[ ! -d .svn ]]
1496	then
1497	printf "\n\n +++ source directory"
1498	printf "\n \"$source_path\" "
1499	printf "\n is not under control of \"subversion\"."
1500	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1501	fi
1502
1503
1504	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1505	Filenames=""
1506	svn status > tmp_mrun
1507	while read line
1508	do
1509	firstc=`echo $line \| cut -c1`
1510	if [[ $firstc = M \|\| $firstc = "?" ]]
1511	then
1512	Name=`echo "$line" \| cut -c8-`
1513	extension=`echo $Name \| cut -d. -f2`
1514	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1515	then
1516	Filenames="$Filenames "$Name
1517	fi
1518	fi
1519	done < tmp_mrun
1520
1521
1522	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1523	for dateiname in $Filenames
1524	do
1525	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1526	source_list=$source_list"$dateiname "
1527	done
1528
1529	cd - > /dev/null
1530
1531
1532	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1533	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1534	# VORHANDEN
1535	elif [[ "$source_list" != "" && $restart_run != true ]]
1536	then
1537
1538	cd $source_path
1539
1540	for filename in $source_list
1541	do
1542
1543	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1544	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1545	then
1546	printf "\n +++ source code file: $filename"
1547	printf "\n must not contain (\"/\") "
1548	locat=source; exit
1549	fi
1550
1551	if [[ ! -f $filename ]]
1552	then
1553	printf "\n +++ source code file: $filename"
1554	printf "\n does not exist"
1555	locat=source; exit
1556	else
1557	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1558	fi
1559
1560	done
1561
1562	cd - > /dev/null
1563
1564	fi
1565
1566
1567	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1568	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1569	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1570	if [[ $restart_run != true ]]
1571	then
1572
1573	if [[ ! -f "$source_path/$mainprog" ]]
1574	then
1575	printf "\n\n +++ main program: $mainprog"
1576	printf "\n does not exist in source directory"
1577	printf "\n \"$source_path\"\n"
1578	locat=source; exit
1579	else
1580	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1581	then
1582	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1583	source_list=${mainprog}" $source_list"
1584	fi
1585	fi
1586	fi
1587
1588
1589	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1590	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1591	if [[ "$restart_run" != true ]]
1592	then
1593	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1594	if [[ ! -f $makefile ]]
1595	then
1596	printf "\n +++ file \"$makefile\" does not exist"
1597	locat=make; exit
1598	else
1599	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1600	fi
1601	fi
1602
1603
1604	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1605	if [[ $restart_run != true && "$add_source_path" != "" ]]
1606	then
1607
1608	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1609	if [[ ! -d $add_source_path ]]
1610	then
1611	printf "\n\n +++ WARNING: additional source code directory"
1612	printf "\n \"$add_source_path\" "
1613	printf "\n does not exist or is not a directory."
1614	printf "\n No source code will be used from this directory!\n"
1615	add_source_path=""
1616	if [[ $silent == false ]]
1617	then
1618	sleep 3
1619	fi
1620	else
1621
1622	cd $add_source_path
1623	found=false
1624
1625	Names=$(ls -1 *.f90 2>&1)
1626	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1627	Names=$(ls -1 *.F90 2>&1)
1628	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1629	Names=$(ls -1 *.F 2>&1)
1630	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1631	Names=$(ls -1 *.f 2>&1)
1632	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1633	Names=$(ls -1 *.c 2>&1)
1634	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1635
1636	cd - > /dev/null
1637	cd SOURCES_FOR_RUN_$fname
1638
1639	# COPY MAKEFILE IF EXISTING
1640	if [[ -f $add_source_path/Makefile ]]
1641	then
1642	printf "\n\n *** user Makefile from directory"
1643	printf "\n \"$add_source_path\" is used \n"
1644	if [[ $silent == false ]]
1645	then
1646	sleep 1
1647	fi
1648	cp $add_source_path/Makefile .
1649	fi
1650
1651	for dateiname in $AddFilenames
1652	do
1653	if [[ -f $dateiname ]]
1654	then
1655	printf "\n +++ source code file \"$dateiname\" found in additional"
1656	printf "\n source code directory \"$add_source_path\" "
1657	printf "\n but was also given with option \"-s\" which means that it should be taken"
1658	printf "\n from directory \"$source_path\"."
1659	locat=source; exit
1660	fi
1661
1662	cp $add_source_path/$dateiname .
1663	source_list="$source_list $dateiname"
1664
1665	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1666	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1667	then
1668	printf "\n\n +++ user file \"$dateiname\" "
1669	printf "\n is not listed in Makefile \n"
1670	locat=source; exit
1671	else
1672
1673	# Default User-Interface von der Liste entfernen, falls Datei
1674	# ein User-Interface enthaelt
1675	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1676	# then
1677	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1678	# then
1679	# rm -rf user_interface.f90
1680	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1681	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1682	# printf "\n since a user-interface is found in file"
1683	# printf "\n \"$add_source_path/$dateiname\" \n"
1684	# sleep 3
1685	# else
1686	if [[ $found = false ]]
1687	then
1688	found=true
1689	printf "\n\n *** following user file(s) added to the"
1690	printf " files to be translated:\n "
1691	fi
1692	printf "$dateiname "
1693	if [[ $silent == false ]]
1694	then
1695	sleep 0.5
1696	fi
1697
1698	fi
1699	done
1700	[[ $found = true ]] && printf "\n"
1701	cd - > /dev/null
1702	fi
1703	fi
1704
1705
1706	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1707	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1708	if [[ $restart_run != true && -n $package_list ]]
1709	then
1710
1711	cd $source_path
1712
1713	for package in $package_list
1714	do
1715
1716	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1717
1718	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1719	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1720	# LIEFERT
1721	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1722
1723
1724	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1725	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1726	for source_list_name in $package_source_list
1727	do
1728	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1729	then
1730
1731	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1732	ending=`echo $source_list_name \| cut -f2 -d.`
1733	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1734	then
1735	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1736	source_list="$source_list $source_list_name"
1737	fi
1738	fi
1739	done
1740	done
1741
1742	cd - > /dev/null
1743	fi
1744
1745
1746	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1747	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1748	# if [[ "$restart_run" != true ]]
1749	# then
1750	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1751	# if [[ ! -f $makefile ]]
1752	# then
1753	# printf "\n +++ file \"$makefile\" does not exist"
1754	# locat=make; exit
1755	# else
1756	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1757	# fi
1758	# fi
1759
1760	fi # do_compile=true
1761
1762
1763	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1764	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1765	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1766	then
1767
1768	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1769	# ZUSAMMENSETZEN
1770	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1771	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1772	then
1773	cpp_options="${cpp_options},-D__ibm=__ibm"
1774	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1775	then
1776	cpp_options="$cpp_options -D__nec"
1777	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1778	then
1779	cpp_options="$cpp_options -D__lc"
1780	else
1781	cpp_options="$cpp_options -D__$localhost"
1782	fi
1783
1784	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1785	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1786	then
1787	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1788	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1789	else
1790	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1791	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1792	fi
1793
1794	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1795	if [[ -n $package_list ]]
1796	then
1797	for package in $package_list
1798	do
1799	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1800	then
1801	if [[ $package != "dvrp_graphics+1PE" ]]
1802	then
1803	cpp_options="${cpp_options},-D__$package=__$package"
1804	else
1805	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1806	export use_seperate_pe_for_dvrp_output=true
1807	fi
1808	else
1809	if [[ $package != "dvrp_graphics+1PE" ]]
1810	then
1811	cpp_options="$cpp_options -D__$package"
1812	else
1813	cpp_options="$cpp_options -D__dvrp_graphics"
1814	export use_seperate_pe_for_dvrp_output=true
1815	fi
1816	fi
1817	done
1818	fi
1819
1820	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1821	if [[ -n $cpp_opts ]]
1822	then
1823	for popts in $cpp_opts
1824	do
1825	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1826	then
1827	cpp_options="${cpp_options},-D__$popts=__$popts"
1828	else
1829	cpp_options="$cpp_options -D__$popts"
1830	fi
1831	done
1832	fi
1833
1834	else
1835
1836
1837	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1838	if [[ $do_remote = false ]]
1839	then
1840	if [[ ! -f $executable ]]
1841	then
1842	printf "\n +++ executable file: $executable"
1843	printf "\n does not exist"
1844	locat=executable; exit
1845	fi
1846	fi
1847	fi
1848
1849
1850	# JOBMODUS FESTSTELLEN
1851	if [[ "$ENVIRONMENT" = BATCH ]]
1852	then
1853	jobmo=BATCH
1854	else
1855	jobmo=INTERACTIVE
1856	fi
1857
1858
1859	# no interactive runs on lctit
1860	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1861	then
1862	printf "\n +++ no interactive runs allowed on host \"$host\" "
1863	printf "\n please submit batch job using mrun option \"-b\" \n"
1864	locat=normal; exit
1865	fi
1866
1867
1868	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1869	# DURCH BENUTZER ANDERWEITIG VEREINBART
1870	if [[ "$compiler_name" = "" ]]
1871	then
1872
1873	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1874	locat=compiler_name; exit
1875
1876	fi
1877
1878
1879	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1880	[[ $localhost = necriam ]] && compiler_name=mpif90
1881
1882
1883
1884	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1885	kennung=$RANDOM
1886	if [[ "$tmp_user_catalog" = "" ]]
1887	then
1888	if [[ $localhost = ibmh ]]
1889	then
1890	tmp_user_catalog=$SCRATCH
1891	elif [[ $localhost = nech ]]
1892	then
1893	tmp_user_catalog=$WRKSHR
1894	else
1895	tmp_user_catalog=/tmp
1896	fi
1897	fi
1898	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1899
1900
1901	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1902	# BESTIMMEN
1903	if [[ "$tmp_data_catalog" = "" ]]
1904	then
1905	if [[ $localhost = nech ]]
1906	then
1907	tmp_data_catalog=$WRKSHR/mrun_restart_data
1908	else
1909	tmp_data_catalog=/tmp/mrun_restart_data
1910	fi
1911	fi
1912
1913
1914	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1915	# ERSETZEN
1916	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1917	then
1918	eval fopts=\"$fopts\"
1919	eval lopts=\"$lopts\"
1920	fi
1921
1922
1923
1924	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1925	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1926	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1927	ROPTS="$ropts"
1928	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1929	# then
1930	XOPT="-X $numprocs"
1931	# fi
1932
1933
1934
1935	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1936	# GRAMM BENOETIGT
1937	done=false
1938	while [[ $done = false ]]
1939	do
1940	cputime=$cpumax
1941	if (( $cputime == 0 ))
1942	then
1943	if [[ $do_batch = true ]]
1944	then
1945	printf "\n +++ cpu-time is undefined"
1946	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1947	printf "\n >>> "
1948	read cputime 1>/dev/null 2>&1
1949	else
1950	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1951	fi
1952	else
1953	done=true
1954	fi
1955	cpumax=$cputime
1956	done
1957
1958	(( minuten = cputime / 60 ))
1959	(( sekunden = cputime - minuten * 60 ))
1960
1961
1962	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1963	if [[ $do_batch = true ]]
1964	then
1965	done=false
1966	while [[ $done = false ]]
1967	do
1968	if (( memory == 0 ))
1969	then
1970	printf "\n +++ memory demand is undefined"
1971	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1972	printf "\n >>> "
1973	read memory 1>/dev/null 2>&1
1974	else
1975	done=true
1976	fi
1977	done
1978	fi
1979
1980
1981	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1982	if [[ $do_remote = true && -z $remote_username ]]
1983	then
1984	while [[ -z $remote_username ]]
1985	do
1986	printf "\n +++ username on remote host \"$host\" is undefined"
1987	printf "\n >>> Please type username:"
1988	printf "\n >>> "
1989	read remote_username
1990	done
1991	mc="$mc -u$remote_username"
1992	fi
1993
1994	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1995	if [[ "$login_init_cmd" != "" ]]
1996	then
1997	export init_cmds="${login_init_cmd};"
1998	fi
1999
2000
2001	# set module load command and export for subjob
2002	if [[ "$modules" != "" ]]
2003	then
2004	if [[ $host = lctit ]]
2005	then
2006	export module_calls=". $modules"
2007	else
2008	export module_calls="module load ${modules};"
2009	fi
2010	fi
2011
2012	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2013	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2014	then
2015	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2016	then
2017	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2018	fi
2019	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2020	# then
2021	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2022	# echo "*** module_calls = $module_calls"
2023	# fi
2024	fi
2025
2026
2027	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2028	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2029	then
2030	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2031	then
2032	mpilib=mpt
2033	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2034	then
2035	mpilib=mvapich
2036	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2037	then
2038	mpilib=impi
2039	fi
2040	fi
2041
2042
2043
2044	###########################################################################
2045	# HEADER-AUSGABE
2046	###########################################################################
2047
2048
2049	calltime=$(date)
2050	printf "\n"
2051	# [[ $silent = false ]] && clear
2052	printf "#------------------------------------------------------------------------# \n"
2053	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2054	printf "\| \| \n"
2055	spalte1="called on:"; spalte2=$localhost_realname
2056	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2057	if [[ $local_compile = false ]]
2058	then
2059	if [[ $do_remote = true ]]
2060	then
2061	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2062	else
2063	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2064	fi
2065	else
2066	spalte1="compiling test only!"; spalte2=""
2067	fi
2068	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2069	if [[ -n $numprocs ]]
2070	then
2071	if [[ $run_coupled_model = false ]]
2072	then
2073	spalte1="number of PEs:"; spalte2=$numprocs
2074	else
2075	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2076	fi
2077	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2078	fi
2079	if [[ -n $tasks_per_node ]]
2080	then
2081	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2082	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2083	fi
2084	if [[ $maximum_parallel_io_streams != $numprocs ]]
2085	then
2086	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	fi
2089	if [[ $use_openmp = true ]]
2090	then
2091	spalte1="threads per task:"; spalte2="$threads_per_task"
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	fi
2094	printf "\| \| \n"
2095	if [[ $do_compile = true ]]
2096	then
2097	if [[ "$mopts" != "" ]]
2098	then
2099	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2100	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2101	zeile=$(echo "$mopts" \| cut -c46-)
2102	while [[ "$zeile" != "" ]]
2103	do
2104	spalte1=""
2105	spalte2=$(echo "$zeile" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$zeile" \| cut -c46-)
2108	done
2109	fi
2110
2111	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2113	zeile=$(echo "$cpp_options" \| cut -c46-)
2114	while [[ "$zeile" != "" ]]
2115	do
2116	spalte1=""
2117	spalte2=$(echo "$zeile" \| cut -c-45)
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	zeile=$(echo "$zeile" \| cut -c46-)
2120	done
2121
2122	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	zeile=$(echo "$fopts" \| cut -c46-)
2125	while [[ "$zeile" != "" ]]
2126	do
2127	spalte1=""
2128	spalte2=$(echo "$zeile" \| cut -c-45)
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	zeile=$(echo "$zeile" \| cut -c46-)
2131	done
2132
2133	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	zeile=$(echo "$lopts" \| cut -c46-)
2136	while [[ "$zeile" != "" ]]
2137	do
2138	spalte1=""
2139	spalte2=$(echo "$zeile" \| cut -c-45)
2140	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2141	zeile=$(echo "$zeile" \| cut -c46-)
2142	done
2143
2144	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	zeile=$(echo "$modules" \| cut -c46-)
2147	while [[ "$zeile" != "" ]]
2148	do
2149	spalte1=""
2150	spalte2=$(echo "$zeile" \| cut -c-45)
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	zeile=$(echo "$zeile" \| cut -c46-)
2153	done
2154
2155	spalte1="main program:"; spalte2=$mainprog
2156	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2157	else
2158	spalte1=executable:; spalte2=$executable
2159	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2160	fi
2161	printf "\| \| \n"
2162	spalte1="base name of files:"; spalte2=$fname
2163	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2164	if [[ $fname != $afname ]]
2165	then
2166	spalte1="base name of input files:"; spalte2=$afname
2167	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2168	fi
2169	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2170	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2171	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2172	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2173
2174	if [[ "$ocean_file_appendix" = true ]]
2175	then
2176	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2177	fi
2178
2179	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2180	then
2181	spalte1="memory demand / PE":; spalte2="$memory MB"
2182	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2183	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2184	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2185	fi
2186
2187	if [[ $do_compile = true ]]
2188	then
2189	printf "\| \| \n"
2190	printf "\| Files to be compiled: \| \n"
2191	zeile=$source_list
2192	while [[ "$zeile" != "" ]]
2193	do
2194	linestart=$(echo $zeile \| cut -c-70)
2195	printf "\| %-70s \| \n" "$linestart"
2196	zeile=$(echo "$zeile" \| cut -c71-)
2197	done
2198	fi
2199	printf "#------------------------------------------------------------------------#"
2200
2201
2202
2203	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2204	if [[ $do_trace = true ]]
2205	then
2206	(( i = 0 ))
2207	while (( i < iin ))
2208	do
2209	(( i = i + 1 ))
2210	if (( i == 1 ))
2211	then
2212	printf "\n\n >>> INPUT-file assignments:\n"
2213	fi
2214	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2215	done
2216	(( i = 0 ))
2217	while (( i < iout ))
2218	do
2219	(( i = i + 1 ))
2220	if (( i == 1 ))
2221	then
2222	printf "\n\n >>> OUTPUT-file assignments:\n"
2223	fi
2224	printf "\n ${localout[$i]} : ${pathout[$i]}"
2225	done
2226	(( i = 0 ))
2227	while (( i < iic ))
2228	do
2229	(( i = i + 1 ))
2230	if (( i == 1 ))
2231	then
2232	printf "\n\n >>> INPUT-commands:\n"
2233	fi
2234	printf "\n ${in_command[$i]}"
2235	done
2236	(( i = 0 ))
2237	while (( i < ioc ))
2238	do
2239	(( i = i + 1 ))
2240	if (( i == 1 ))
2241	then
2242	printf "\n\n >>> OUTPUT-commands:\n"
2243	fi
2244	printf "\n ${out_command[$i]}"
2245	done
2246	fi
2247
2248
2249	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2250	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2251	then
2252	antwort=dummy
2253	printf "\n\n"
2254	printf " >>> everything o.k. (y/n) ? "
2255	while read antwort
2256	do
2257	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2258	then
2259	printf " >>> everything o.k. (y/n) ? "
2260	else
2261	break
2262	fi
2263	done
2264	if [[ $antwort = n \|\| $antwort = N ]]
2265	then
2266	locat=user_abort; (( iec = 0 )); exit
2267	fi
2268	if [[ $do_batch = true ]]
2269	then
2270	printf " >>> batch-job will be created and submitted"
2271	else
2272	if [[ $local_compile = false ]]
2273	then
2274	printf " >>> MRUN will now continue to execute on this machine"
2275	else
2276	printf " >>> a test compilation will now be carried out on this machine"
2277	fi
2278	fi
2279	fi
2280
2281
2282	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2283	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2284	check_depository="${working_directory}/trunk/UTIL"
2285	check_sources="${working_directory}/tmp_check_namelist_files"
2286	skip_check=false
2287
2288	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2289	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2290	then
2291	skip_check=true
2292	reason="run on remote host or parameter file check has not been compiled."
2293	fi
2294	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2295	then
2296	skip_check=true
2297	reason="parameter file check has not been compiled."
2298	fi
2299
2300	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2301	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2302	then
2303	skip_check=true
2304	reason="serial run."
2305	fi
2306
2307	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2308	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2309	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2310	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2311	if [[ $check_namelist_files == false ]]
2312	then
2313	skip_check=true
2314	reason="-z option set."
2315	fi
2316
2317	if [[ $fromhost != $localhost ]]
2318	then
2319	skip_check=true
2320	reason="submitting host is local host."
2321	fi
2322
2323	if [[ $run_coupled_model == true ]]
2324	then
2325	skip_check=true
2326	reason="coupled run."
2327	fi
2328
2329	if [[ $restart_run == true ]]
2330	then
2331	skip_check=true
2332	reason="restart run."
2333	fi
2334
2335	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2336	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2337	last_char=`echo $filename_input \| cut -c $last_char_int`
2338	if [[ "$last_char" == "f" ]]
2339	then
2340	skip_check=true
2341	reason="restart run."
2342	fi
2343
2344	if [[ $skip_check == false ]]
2345	then
2346	tmp_check=${working_directory}/tmp_check
2347
2348	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2349	# NOT NECESSARILY REQUIRED
2350	line=""
2351	found=false
2352	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2353	while read line1
2354	do
2355	line="$line1"
2356	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2357	then
2358	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2359	found=true
2360	fi
2361	done < $tmp_check
2362
2363	if [[ $found = false ]]
2364	then
2365	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2366	fi
2367
2368	rm -rf ${working_directory}/tmp_check
2369
2370	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2371	for item in $input_list
2372	do
2373	if [[ "$item" == "restart" ]]
2374	then
2375	check_restart=1
2376	else
2377	check_restart=0
2378	fi
2379	done
2380
2381	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2382	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2383	then
2384	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2385	locat=check_namelist; exit
2386	fi
2387
2388	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2389	if [[ $check_restart == 1 ]]
2390	then
2391
2392	filenamef="${filename_input}f"
2393	if [[ ! -f $filenamef ]]
2394	then
2395	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2396	check_restart=0
2397	answer=dummy
2398	printf "\n\n"
2399
2400	if [[ $silent == false ]]
2401	then
2402	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2403	do
2404	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2405	read answer
2406	done
2407	if [[ $answer = a \|\| $answer = A ]]
2408	then
2409	printf "\n +++ Aborting...."
2410	locat=normal; exit
2411	fi
2412	fi
2413	else
2414	check_restart=1
2415	fi
2416	fi
2417
2418	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2419	mkdir $check_sources
2420	cd $check_sources
2421
2422
2423	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2424	if [[ -d $add_source_path ]]
2425	then
2426	printf "\n\n *** copying files from $check_depository"
2427	cp $check_depository/check_namelist_files.tar ./
2428
2429	printf "\n\n *** untar of makefile and source files in $check_sources"
2430	tar -xf check_namelist_files.tar > /dev/null 2>&1
2431
2432	printf "\n\n *** adding user code."
2433	cp $add_source_path/* ./
2434	touch check_namelist_files.f90
2435
2436	# GET COMPILER OPTIONS AND PERFORM MAKE
2437	printf "\n\n *** compiling code if necessary...\n"
2438
2439	# workaround for batch jobs on local machine (lcxe6)
2440	if [[ $do_batch == true && $do_remote == false ]]
2441	then
2442	eval $init_cmds
2443	fi
2444
2445	# GET CHECK OPTIONS
2446	line=""
2447	found=false
2448
2449	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2450
2451	while read line1
2452	do
2453
2454	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2455	then
2456	line="$line1"
2457	fi
2458
2459	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2460	then
2461	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2462	line="$line "
2463	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2464	found=true
2465	fi
2466
2467	done < $tmp_check
2468	copts_check="$copts_check -D__check -D__parallel"
2469
2470	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2471
2472	# GET MAKE OUTPUT
2473	if [[ $? != 0 ]]
2474	then
2475	printf "\n +++ error during make."
2476	answer=dummy
2477	printf "\n\n"
2478	if [[ $silent == false ]]
2479	then
2480	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2481	do
2482	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2483	read answer
2484	done
2485	if [[ $answer = a \|\| $answer = A ]]
2486	then
2487	printf "\n +++ Aborting..."
2488	rm -rf $check_sources
2489	locat=normal; exit
2490	else
2491	skip_check=true
2492	fi
2493	else
2494	skip_check=true
2495	fi
2496	fi
2497	else
2498	cp $PALM_BIN/check_namelist_files.x ./
2499	fi
2500
2501	cp $filename_input ./PARIN
2502	if [[ $check_restart == 1 ]]
2503	then
2504	cp $filenamef ./PARINF
2505	fi
2506
2507	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2508	then
2509	printf "\n *** adding topography data"
2510	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2511
2512	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2513	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2514	# WHICH REQUIRE SUFFICIENT MEMORY
2515	ulimit -s unlimited
2516	fi
2517
2518	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2519	cat > ENVPAR << %%END%%
2520	&envpar run_identifier = '$fname', host = '$host',
2521	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2522	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2523	maximum_cpu_time_allowed = ${cpumax}.,
2524	revision = '$global_revision',
2525	local_dvrserver_running = $local_dvrserver_running /
2526
2527	%%END%%
2528
2529	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2530	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2531	then
2532	printf "\n +++ WARNING: check_namelist_files.x not found."
2533	answer=dummy
2534	printf "\n\n"
2535
2536	if [[ $silent == false ]]
2537	then
2538	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2539	do
2540	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2541	read answer
2542	done
2543	if [[ $answer = a \|\| $answer = A ]]
2544	then
2545	printf "\n +++ Aborting..."
2546	rm -rf $check_sources
2547	locat=normal; exit
2548	else
2549	printf "\n *** skipping parameter file check."
2550	fi
2551	fi
2552
2553	elif [[ $skip_check == false ]]
2554	then
2555	# STARTING THE PARAMETER FILE CHECK
2556	printf "\n\n *** starting parameter file check..."
2557
2558	# CHECKING THE P3D FILE
2559	printf "\n\n (1) checking $filename_input"
2560	echo "$numprocs 0 0" > VARIN
2561	errors=`./check_namelist_files.x < VARIN 2>&1`
2562
2563	check_error=false
2564	if [[ "$errors" == "" ]]
2565	then
2566	printf " --> o.k."
2567	else
2568	printf " --> failed."
2569	check_error=true
2570	printf "\n\n $errors"
2571	fi
2572
2573	# CHECKING THE PD3F FILE IF NECESSARY
2574	if [[ $check_restart == 1 && $check_error == false ]]
2575	then
2576	printf "\n\n (2) checking $filenamef"
2577
2578	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2579	# IN &INIPAR LIST
2580	found=false
2581	cat PARINF \| while read line
2582	do
2583	line=$(echo $line\|sed 's/ //g')
2584	if [[ $line == "&inipar" ]]
2585	then
2586	start_search=true
2587	fi
2588
2589	if [[ $start_search == true ]]
2590	then
2591	if [[ $line == "initializing_actions='read_restart_data'" ]]
2592	then
2593	found=true
2594	break
2595	fi
2596	fi
2597
2598	if [[ $line == "/" ]]
2599	then
2600	start_search=false
2601	fi
2602
2603	done
2604
2605	if [[ $found = false ]]
2606	then
2607	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2608	printf "\n in &inipar list in $fname$p3df_suffix."
2609	rm -rf $check_sources
2610	locat=check_namelist; exit
2611	fi
2612
2613	# READ max_user_pr FROM FILES
2614	if [[ -f parin_for_check ]]
2615	then
2616	read max_pr_user < parin_for_check
2617	else
2618	max_user_pr=0
2619	fi
2620
2621	echo "$numprocs 1 $max_pr_user" > VARIN
2622	errors=`./check_namelist_files.x < VARIN 2>&1`
2623
2624	if [[ "$errors" == "" ]]
2625	then
2626	printf " --> o.k."
2627	else
2628	printf " --> failed."
2629	check_error=true
2630	printf "\n\n $errors"
2631	fi
2632	fi
2633
2634	# REPORT ERRORS AND CONTINUE/EXIT
2635	if [[ $check_error == true ]]
2636	then
2637	printf "\n +++ errors found in the parameter file!\n"
2638	answer=dummy
2639	printf "\n\n"
2640
2641	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2642	do
2643	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2644	read answer
2645	done
2646
2647	if [[ $answer = a \|\| $answer = A ]]
2648	then
2649	printf "\n +++ Aborting..."
2650	rm -rf $check_sources
2651	locat=normal; exit
2652	fi
2653	else
2654	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2655	fi
2656	rm -rf $check_sources
2657	fi
2658	else
2659	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2660	fi
2661
2662	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2663	rm -rf $check_sources
2664	cd $working_directory
2665
2666
2667	# DETERMINE PATH FOR MAKE DEPOSITORY
2668	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2669	then
2670
2671	line=""
2672	grep "%depository_path" $config_file > tmp_mrun
2673	while read line
2674	do
2675	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2676	then
2677	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2678	then
2679	global_depository_path=`echo $line \| cut -d" " -s -f2`
2680	fi
2681	fi
2682	done < tmp_mrun
2683
2684	line=""
2685	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2686	while read line
2687	do
2688	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2689	then
2690	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2691	then
2692	local_depository_path=`echo $line \| cut -d" " -s -f2`
2693	fi
2694	fi
2695	done < tmp_mrun
2696
2697	if [[ "$local_depository_path" = "" ]]
2698	then
2699	if [[ "$global_depository_path" != "" ]]
2700	then
2701	local_depository_path=$global_depository_path
2702	else
2703	printf "\n\n +++ no depository path found in configuration file"
2704	printf "\n for local host \"$localhost\" "
2705	printf "\n please set \"\%depository_path\" in configuration file\n"
2706	locat=config_file; exit
2707	fi
2708	fi
2709	eval local_depository_path=$local_depository_path
2710	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2711	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2712
2713
2714	basename=`echo $mainprog \| cut -f1 -d"."`
2715	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2716	if [[ ! -f $make_depository ]]
2717	then
2718	printf "\n"
2719	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2720	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2721	fi
2722
2723	fi
2724
2725
2726	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2727	# CHENDE AKTIONEN DURCHGEFUEHRT
2728	if [[ $do_batch = false ]]
2729	then
2730
2731
2732	# TEMPORAEREN KATALOG ERZEUGEN
2733	mkdir -p $TEMPDIR
2734	chmod go+rx $TEMPDIR
2735	tmpcreate=true
2736
2737
2738	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2739	# TEMPORAERES VERZEICHNIS KOPIEREN
2740	if [[ $do_compile = true ]]
2741	then
2742
2743	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2744	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2745	if [[ $localhost = nech ]]
2746	then
2747	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2748	if mkdir -p $TEMPDIR_COMPILE
2749	then
2750	printf "\n *** \"$TEMPDIR_COMPILE\" "
2751	printf "\n is generated as temporary directory for cross compiling\n"
2752	else
2753	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2754	printf "\n needed for cross compilation failed"
2755	locat=compile
2756	exit
2757	fi
2758	else
2759	TEMPDIR_COMPILE=$TEMPDIR
2760	fi
2761
2762	cp $make_depository $TEMPDIR_COMPILE
2763	cd $TEMPDIR_COMPILE
2764	tar -xf $make_depository > /dev/null 2>&1
2765	cd - > /dev/null
2766
2767	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2768
2769	else
2770
2771	cp $executable ${TEMPDIR}/a.out
2772
2773	fi
2774
2775
2776	# WECHSEL IN TEMPORAEREN KATALOG
2777	cd $TEMPDIR
2778	printf "\n *** changed to temporary directory: $TEMPDIR"
2779
2780
2781	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2782	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2783	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2784	# ERMITTELN
2785	(( i = 0 ))
2786	while (( i < iout ))
2787	do
2788	(( i = i + 1 ))
2789	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2790	then
2791	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2792	else
2793	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2794	fi
2795	done
2796
2797
2798	# IF REQUIRED, START WITH COMPILING ACTIONS
2799	if [[ $do_compile = true ]]
2800	then
2801
2802
2803	if [[ -f a.out ]]
2804	then
2805
2806	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2807	printf "\n\n\n *** executable a.out found"
2808	printf "\n no compilation required \n"
2809
2810	else
2811
2812	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2813	printf "\n\n\n *** compilation starts \n$striche\n"
2814	printf " *** compilation with make using following options:\n"
2815	printf " make depository: $make_depository"
2816	if [[ "$mopts" != "" ]]
2817	then
2818	printf " make options: $mopts\n"
2819	fi
2820	printf " compilername: $compiler_name\n"
2821	printf " compiler options: $fopts\n"
2822	printf " preprocessor directives: $cpp_options \n"
2823	printf " linker options: $lopts \n"
2824	if [[ "$modules" != "" ]]
2825	then
2826	printf " modules to be load: $modules \n"
2827	fi
2828	printf " source code files: $source_list \n"
2829
2830	if [[ $localhost = nech ]]
2831	then
2832	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2833	cp $TEMPDIR_COMPILE/a.out .
2834	[[ $? != 0 ]] && compile_error=true
2835	rm -rf $TEMPDIR_COMPILE
2836	elif [[ $localhost = ibmh ]]
2837	then
2838	printf " compiler is called via ssh on \"plogin1\" \n"
2839	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2840	[[ ! -f a.out ]] && compile_error=true
2841	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2842	elif [[ $localhost = lcsgib ]]
2843	then
2844	printf " compiler is called via ssh on \"bicegate0\" \n"
2845	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2846	[[ ! -f a.out ]] && compile_error=true
2847	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2848	elif [[ $localhost = lcsgih ]]
2849	then
2850	printf " compiler is called via ssh on \"hicegate0\" \n"
2851	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2852	[[ ! -f a.out ]] && compile_error=true
2853	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2854	elif [[ $localhost = lcflow ]]
2855	then
2856	printf " compiler is called via ssh on \"flow\" \n"
2857	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2858	[[ ! -f a.out ]] && compile_error=true
2859	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2860	elif [[ $localhost = lccrayf ]]
2861	then
2862	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2863	else
2864	[[ "$init_cmds" != "" ]] && eval $init_cmds
2865	[[ "$module_calls" != "" ]] && eval $module_calls
2866	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2867	fi
2868
2869	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2870	then
2871	printf "\n +++ error occured while compiling or linking"
2872	locat=compile
2873
2874	exit
2875	else
2876	printf "$striche\n *** compilation finished \n"
2877	fi
2878
2879	fi
2880
2881	fi
2882
2883
2884	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2885	if [[ $local_compile = true ]]
2886	then
2887	cd $HOME
2888	rm -rf $TEMPDIR
2889	locat=local_compile; exit
2890	fi
2891
2892
2893	# BEREITSTELLEN DER INPUT-DATEIEN
2894	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2895	(( i = 0 ))
2896	while (( i < iin ))
2897	do
2898	(( i = i + 1 ))
2899	if (( i == 1 ))
2900	then
2901	printf "\n\n *** providing INPUT-files:\n$striche"
2902	fi
2903
2904
2905	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2906	if [[ "${transin[$i]}" = unavailable ]]
2907	then
2908	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2909	then
2910	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2911	printf "\n is not available!"
2912	else
2913	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2914	printf "\n is not available!"
2915	fi
2916	continue
2917	fi
2918
2919	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2920	files_for_pes=false; datentyp=file
2921	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2922	then
2923	files_for_pes=true; datentyp=directory
2924	actionin[$i]=""
2925	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2926	then
2927	actionin[$i]=""
2928	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2929	then
2930	files_for_pes=true; datentyp=directory
2931	actionin[$i]="ar"
2932	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2933	then
2934	actionin[$i]="ar"
2935	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2936	then
2937	files_for_pes=true; datentyp=directory
2938	actionin[$i]="fl"
2939	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2940	then
2941	actionin[$i]="fl"
2942	fi
2943
2944	if [[ $files_for_pes = true ]]
2945	then
2946	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2947	else
2948	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2949	fi
2950
2951	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2952	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2953	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2954	# SERVER ZU HOLEN
2955	if [[ "${actionin[$i]}" = fl ]]
2956	then
2957	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2958	if [[ $files_for_pes = false ]]
2959	then
2960	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2961	then
2962	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2963	got_tmp[$i]=true
2964	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2965	then
2966	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2967	printf "\n *** trying to use backup copy in \"$WORK\" "
2968	cp $WORK/${frelin[$i]} ${localin[$i]}
2969	else
2970	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2971	printf "\n or \"$tmp_data_catalog\" does not exist!"
2972	printf "\n *** trying to get copy from archive"
2973	actionin[$i]=ar
2974	fi
2975	else
2976	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2977	then
2978	mkdir ${localin[$i]}
2979	cd $tmp_data_catalog/${frelin[$i]}
2980	for file in $(ls *)
2981	do
2982	ln $file $TEMPDIR/${localin[$i]}
2983	done
2984	cd $TEMPDIR
2985	got_tmp[$i]=true
2986	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2987	then
2988	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2989	printf "\n *** trying to use backup copy in \"$WORK\" "
2990	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2991	else
2992	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2993	printf "\n or \"$tmp_data_catalog\" does not exist!"
2994	printf "\n *** trying to get copy from archive"
2995	actionin[$i]=ar
2996	fi
2997	fi
2998	fi
2999
3000
3001	# DATEI LIEGT AUF ARCHIV-SERVER
3002	if [[ "${actionin[$i]}" = ar ]]
3003	then
3004
3005	if [[ $files_for_pes = false ]]
3006	then
3007	printf "\n file will be restored from archive-system ($archive_system)!"
3008	else
3009	printf "\n directory will be restored from archive-system ($archive_system)!"
3010	fi
3011
3012	file_restored=false
3013
3014	if [[ $archive_system = asterix ]]
3015	then
3016	do_stagein=true
3017	(( stagein_anz = 0 ))
3018	while [[ $do_stagein = true ]]
3019	do
3020	if [[ $files_for_pes = false ]]
3021	then
3022	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3023	else
3024	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3025	fi
3026	cat STAGEIN_OUTPUT
3027	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3028	then
3029	file_restored=true
3030	do_stagein=false
3031	else
3032	(( stagein_anz = stagein_anz + 1 ))
3033	if (( stagein_anz == 10 ))
3034	then
3035	printf "\n +++ stagein stoped after 10 tries"
3036	locat=stage
3037	exit
3038	fi
3039	printf "\n +++ restoring from archive failed, trying again:"
3040	sleep 900
3041	fi
3042	done
3043	elif [[ $archive_system = DMF ]]
3044	then
3045	if [[ $files_for_pes = false ]]
3046	then
3047	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3048	locat=DMF
3049	exit
3050	else
3051	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3052	cp -r $ARCHIVE/${frelin[$i]} $PWD
3053	file_restored=true
3054	fi
3055	elif [[ $archive_system = tivoli ]]
3056	then
3057	if [[ $files_for_pes = false ]]
3058	then
3059	if [[ $localhost = lcsgih ]]
3060	then
3061	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3062	else
3063	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3064	fi
3065	else
3066	(( inode = 0 ))
3067	while (( inode < nodes ))
3068	do
3069	if [[ $localhost = lcsgih ]]
3070	then
3071	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3072	else
3073	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3074	fi
3075	(( inode = inode + 1 ))
3076	done
3077	fi
3078	file_restored=true
3079	elif [[ $archive_system = ut ]]
3080	then
3081	if [[ $files_for_pes = false ]]
3082	then
3083	cp $UT/${frelin[$i]} .
3084	else
3085	(( inode = 0 ))
3086	while (( inode < nodes ))
3087	do
3088	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3089	(( inode = inode + 1 ))
3090	done
3091	fi
3092	file_restored=true
3093	else
3094	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3095	locat=rearchive
3096	exit
3097	fi
3098
3099	if [[ $file_restored = true ]]
3100	then
3101
3102	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3103	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3104	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3105	if [[ $files_for_pes = false ]]
3106	then
3107	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3108	else
3109	mkdir $tmp_data_catalog/${frelin[$i]}
3110	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3111	fi
3112	got_tmp[$i]=true
3113
3114	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3115	mv ${frelin[$i]} ${localin[$i]}
3116
3117	fi
3118	fi
3119
3120
3121	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3122	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3123	then
3124
3125	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3126	then
3127
3128	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3129	printf "\n file will be provided for $numprocs processors"
3130	mkdir ${localin[$i]}
3131	ival=$numprocs
3132	(( ii = 0 ))
3133	while (( ii <= ival-1 ))
3134	do
3135	if (( ii < 10 ))
3136	then
3137	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3138	elif (( ii < 100 ))
3139	then
3140	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3141	elif (( ii < 1000 ))
3142	then
3143	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3144	else
3145	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3146	fi
3147	(( ii = ii + 1 ))
3148	done
3149
3150	else
3151
3152	if [[ $files_for_pes = true ]]
3153	then
3154
3155	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3156	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3157	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3158	# PER MOVE UMBENANNT WERDEN
3159	printf "\n providing $numprocs files for the respective processors"
3160	mkdir ${localin[$i]}
3161	if [[ $link_local_input = true ]]
3162	then
3163	printf " using ln -f\n"
3164	cd ${absnamein[$i]}
3165	for file in $(ls *)
3166	do
3167	ln -f $file ${localin[$i]}
3168	done
3169	cd $TEMPDIR
3170	fi
3171	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3172	if [[ ! -f "${localin[$i]}/_0000" ]]
3173	then
3174	if [[ $link_local_input = true ]]
3175	then
3176	printf " ln failed for .../_0000, using cp...\n"
3177	fi
3178	cp -r ${absnamein[$i]}/* ${localin[$i]}
3179	fi
3180
3181	else
3182	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3183	if [[ $link_local_input = true ]]
3184	then
3185	printf " using ln -f\n"
3186	ln -f ${absnamein[$i]} ${localin[$i]}
3187	fi
3188	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3189	if [[ ! -f "${localin[$i]}" ]]
3190	then
3191	if [[ $link_local_input = true ]]
3192	then
3193	printf " ln failed, using cp...\n"
3194	fi
3195	cp ${absnamein[$i]} ${localin[$i]}
3196	fi
3197	fi
3198	fi
3199	fi
3200
3201	done
3202	if (( i != 0 ))
3203	then
3204	printf "\n$striche\n *** all INPUT-files provided \n"
3205	fi
3206
3207
3208	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3209	(( i = 0 ))
3210	while (( i < iic ))
3211	do
3212	(( i = i + 1 ))
3213	if (( i == 1 ))
3214	then
3215	printf "\n\n *** execution of INPUT-commands:\n$striche"
3216	fi
3217	printf "\n >>> ${in_command[$i]}"
3218	eval ${in_command[$i]}
3219	if (( i == iic ))
3220	then
3221	printf "\n$striche\n"
3222	fi
3223	done
3224
3225
3226	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3227	cpurest=${cpumax}.
3228
3229
3230	# START DVR STREAMING SERVER
3231	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3232	then
3233	if [[ "$dvr_server" != "" ]]
3234	then
3235
3236	printf "\n\n *** preparing the dvr streaming server configuration file"
3237
3238	# Check, if a dvr server is already running
3239	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3240	if [[ "$running_dvrserver_id" != "" ]]
3241	then
3242
3243	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3244	printf "\n This server is used instead starting a new one!"
3245	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3246
3247	else
3248
3249	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3250	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3251	then
3252	cp ${PALM_BIN}/.dvrserver.config .
3253
3254	# Entering the BASEDIR, UID and GID into this file
3255	user_id=`id -u`
3256	group_id=`id -g`
3257	# & is needed as seperator, because TEMPDIR contains /
3258	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3259	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3260	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3261	mv .dvrserver.3 .dvrserver.config
3262	rm .dvrserver.1 .dvrserver.2
3263
3264	# Start dvr server in background, get his id and print on terminal
3265	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3266	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3267	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3268	local_dvrserver_running=.TRUE.
3269	else
3270	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3271	printf "\n \"$PALM_BIN\" "
3272	locat=dvr
3273	exit
3274	fi
3275
3276	fi
3277
3278	else
3279	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3280	fi
3281	fi
3282
3283
3284	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3285	# LESEN VON PALM)
3286	cat > ENVPAR << %%END%%
3287	&envpar run_identifier = '$fname', host = '$localhost',
3288	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3289	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3290	maximum_cpu_time_allowed = ${cpumax}.,
3291	revision = '$global_revision',
3292	local_dvrserver_running = $local_dvrserver_running /
3293
3294	%%END%%
3295
3296
3297	# PROGRAMMSTART
3298	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3299	PATH=$PATH:$TEMPDIR
3300
3301	# MPI debug option (argument checking, slows down execution due to increased latency)
3302	if [[ "$mpi_debug" = true ]]
3303	then
3304	export MPI_CHECK_ARGS=1
3305	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3306	fi
3307
3308	if [[ "$totalview" = true ]]
3309	then
3310	printf "\n *** totalview debugger will be used"
3311	tv_opt="-tv"
3312	else
3313	tv_opt=""
3314	fi
3315
3316	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3317	then
3318	if [[ "$ENVIRONMENT" = BATCH ]]
3319	then
3320	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3321	then
3322	printf "\n +++ debug is allowed in interactive mode only"
3323	locat=debug
3324	exit
3325	fi
3326	fi
3327	if [[ $localhost = ibmh ]]
3328	then
3329
3330	# SETUP THE IBM MPI ENVIRONMENT
3331	export MP_SHARED_MEMORY=yes
3332	export AIXTHREADS_SCOPE=S
3333	export OMP_NUM_THREADS=$threads_per_task
3334	export AUTHSTATE=files
3335	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3336
3337	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3338	export MP_ADAPTER_USE=shared
3339	export MP_CPU_USE=multiple
3340	export MP_TIMEOUT=1200
3341
3342	unset MP_TASK_AFFINITY
3343
3344	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3345	#(( ii = 1 ))
3346	#while (( ii <= $numprocs ))
3347	#do
3348	# echo $localhost_realname >> hostfile
3349	# (( ii = ii + 1 ))
3350	#done
3351	#export MP_HOSTFILE=hostfile
3352
3353	if [[ "$LOADLBATCH" = yes ]]
3354	then
3355	totalview poe a.out $ROPTS
3356	else
3357	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3358	export TVDSVRLAUNCHCMD=ssh
3359	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3360	fi
3361	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3362	then
3363	# CURRENTLY NO DEBUGGER ON LCSGI
3364	if [[ $run_coupled_model = true ]]
3365	then
3366	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3367	locat=debug
3368	exit
3369	else
3370	echo "no_coupling" > runfile_atmos
3371	fi
3372	(( ii = $numprocs / $threads_per_task ))
3373	export OMP_NUM_THREADS=$threads_per_task
3374	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3375	if [[ $threads_per_task != 1 ]]
3376	then
3377	printf "\n threads per task: $threads_per_task"
3378	fi
3379	printf "\n\n"
3380	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3381	then
3382	# export MPI_LAUNCH_TIMEOUT=360
3383	if [[ "$totalview" = true ]]
3384	then
3385	printf "\n running totalview debugger"
3386	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3387	else
3388	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3389	fi
3390	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3391	then
3392	# ulimit -s 300000 # A too large stack size causes problems
3393	# export MV2_NUM_PORTS=2
3394	# export MV2_CPU_MAPPING=0:1:2:3
3395	if [[ "$totalview" = true ]]
3396	then
3397	printf "\n running totalview debugger"
3398	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3399	else
3400	mpiexec ./a.out $ROPTS < runfile_atmos
3401	fi
3402	fi
3403	else
3404	printf "\n +++ no debug available on \"$localhost\" "
3405	printf "\n or not implemented in mrun so far"
3406	locat=debug
3407	exit
3408	fi
3409
3410	# end debug mode
3411	else
3412
3413	# normal execution
3414	if [[ -n $numprocs ]]
3415	then
3416	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3417	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3418	then
3419	# SETUP THE IBM MPI ENVIRONMENT
3420	if [[ $host != ibmh && $host != ibmkisti ]]
3421	then
3422	export MP_SHARED_MEMORY=yes
3423	export AIXTHREAD_SCOPE=S
3424	export OMP_NUM_THREADS=$threads_per_task
3425	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3426	export AUTHSTATE=files
3427	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3428	# export MP_PRINTENV=yes
3429
3430	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3431	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3432	export MP_WAIT_MODE=poll
3433	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3434	fi
3435
3436	if [[ $host = ibmkisti ]]
3437	then
3438	export LANG=en_US
3439	export MP_SHARED_MEMORY=yes
3440	if [[ $threads_per_task = 1 ]]
3441	then
3442	export MP_SINGLE_THREAD=yes
3443	export MEMORY_AFFINITY=MCM
3444	else
3445	export OMP_NUM_THREADS=$threads_per_task
3446	fi
3447	fi
3448
3449	if [[ "$LOADLBATCH" = yes ]]
3450	then
3451	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3452	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3453	then
3454	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3455	else
3456	if [[ $run_coupled_model = false ]]
3457	then
3458	if [[ "$ocean_file_appendix" = true ]]
3459	then
3460	echo "precursor_ocean" > runfile_atmos
3461	else
3462	echo "precursor_atmos" > runfile_atmos
3463	fi
3464	else
3465	(( iia = $numprocs_atmos / $threads_per_task ))
3466	(( iio = $numprocs_ocean / $threads_per_task ))
3467	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3468	printf "\n using $coupled_mode coupling"
3469	printf "\n\n"
3470	echo "coupled_run $iia $iio" > runfile_atmos
3471	fi
3472	poe ./a.out $ROPTS < runfile_atmos
3473	fi
3474	else
3475	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3476	then
3477	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3478	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3479	then
3480	if [[ -f $hostfile ]]
3481	then
3482	cp $hostfile hostfile
3483	else
3484	(( ii = 1 ))
3485	while (( ii <= $numprocs ))
3486	do
3487	echo $localhost_realname >> hostfile
3488	(( ii = ii + 1 ))
3489	done
3490	fi
3491	export MP_HOSTFILE=hostfile
3492	if [[ $run_coupled_model = false ]]
3493	then
3494	if [[ "$ocean_file_appendix" = true ]]
3495	then
3496	echo "precursor_ocean" > runfile_atmos
3497	else
3498	echo "precursor_atmos" > runfile_atmos
3499	fi
3500	else
3501	(( iia = $numprocs_atmos / $threads_per_task ))
3502	(( iio = $numprocs_ocean / $threads_per_task ))
3503	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3504	printf "\n using $coupled_mode coupling"
3505	printf "\n\n"
3506	echo "coupled_run $iia $iio" > runfile_atmos
3507	fi
3508	if [[ $localhost = ibmy ]]
3509	then
3510	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3511	else
3512	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3513	fi
3514
3515	else
3516	if [[ "$host_file" = "" ]]
3517	then
3518	printf "\n +++ no hostfile given in configuration file"
3519	locat=config_file
3520	exit
3521	else
3522	eval host_file=$host_file
3523	fi
3524	export MP_HOSTFILE=$host_file
3525	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3526	fi
3527	fi
3528	elif [[ $host = nech \|\| $host = necriam ]]
3529	then
3530	(( ii = nodes ))
3531	if [[ $ii = 1 ]]
3532	then
3533	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3534	export MPIPROGINF=YES
3535	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3536	echo "*** execution on single node with mpirun"
3537	mpirun -np $numprocs ./a.out $ROPTS
3538	else
3539	(( i = 0 ))
3540	while (( i < ii ))
3541	do
3542	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3543	(( i = i + 1 ))
3544	done
3545
3546	echo "#!/bin/sh" > mpi_exec_shell
3547	echo " " >> mpi_exec_shell
3548	echo "set -u" >> mpi_exec_shell
3549	echo "F_ERRCNT=0" >> mpi_exec_shell
3550	echo "MPIPROGINV=YES" >> mpi_exec_shell
3551	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3552	echo "cpurest=$cpurest" >> mpi_exec_shell
3553	echo "fname=$fname" >> mpi_exec_shell
3554	echo "localhost=$localhost" >> mpi_exec_shell
3555	echo "return_addres=$return_addres" >> mpi_exec_shell
3556	echo "return_username=$return_username" >> mpi_exec_shell
3557	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3558	echo "write_binary=$write_binary" >> mpi_exec_shell
3559	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3560	echo " " >> mpi_exec_shell
3561	echo "export F_ERRCNT" >> mpi_exec_shell
3562	echo "export MPIPROGINV" >> mpi_exec_shell
3563	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3564	echo "export cpurest" >> mpi_exec_shell
3565	echo "export fname" >> mpi_exec_shell
3566	echo "export localhost" >> mpi_exec_shell
3567	echo "export return_addres" >> mpi_exec_shell
3568	echo "export return_username" >> mpi_exec_shell
3569	echo "export tasks_per_node" >> mpi_exec_shell
3570	echo "export write_binary" >> mpi_exec_shell
3571	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3572	echo " " >> mpi_exec_shell
3573	echo "exec ./a.out" >> mpi_exec_shell
3574
3575	chmod u+x mpi_exec_shell
3576	export MPIPROGINF=YES
3577	mpirun -f multinode_config &
3578	wait
3579
3580	fi
3581	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3582	then
3583
3584	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3585	# DOES NOT EXIST
3586	if [[ $host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3587	then
3588	if [[ -f $hostfile ]]
3589	then
3590	cp $hostfile hostfile
3591	(( ii = $numprocs / $threads_per_task ))
3592	else
3593	(( ii = 1 ))
3594	while (( ii <= $numprocs / $threads_per_task ))
3595	do
3596	echo $localhost_realname >> hostfile
3597	(( ii = ii + 1 ))
3598	done
3599	fi
3600	eval zeile=\"`head -n $ii hostfile`\"
3601	printf "\n *** running on: $zeile"
3602	fi
3603
3604	(( ii = $numprocs / $threads_per_task ))
3605	export OMP_NUM_THREADS=$threads_per_task
3606	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3607	if [[ $threads_per_task != 1 ]]
3608	then
3609	# increase stack size to unlimited, because large runs
3610	# may abort otherwise
3611	ulimit -Ss unlimited
3612	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3613	fi
3614	if [[ $run_coupled_model = false ]]
3615	then
3616	if [[ "$ocean_file_appendix" = true ]]
3617	then
3618	echo "precursor_ocean" > runfile_atmos
3619	else
3620	echo "precursor_atmos" > runfile_atmos
3621	fi
3622	printf "\n\n"
3623	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3624	then
3625	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3626	then
3627	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3628	# export MPI_DSM_DISTRIBUTE=1
3629	# MPI_DSM_CPULIST: pin MPI processes to cores
3630	if [[ $use_openmp = false ]]
3631	then
3632	if [[ "$sgi_feature" = ice2 ]]
3633	then
3634	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3635	else
3636	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3637	fi
3638	else
3639	unset MPI_DSM_CPULIST
3640	fi
3641	# MPI_IB_RAILS: use both IB rails on ICE2
3642	export MPI_BUFS_PER_HOST=512
3643	export MPI_IB_RAILS=2
3644	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3645	export MPI_CONNECTIONS_THRESHOLD=8192
3646	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3647	export MPI_TYPE_DEPTH=20
3648	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3649	export MPI_GROUP_MAX=64
3650	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3651	if [[ $use_openmp = true ]]
3652	then
3653	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3654	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3655	else
3656	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3657	fi
3658
3659	# next is test for openmp usage
3660	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3661	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3662	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3663	then
3664	export MV2_NUM_PORTS=2
3665	# The default setting of MV2_CPU_MAPPING gives best results
3666	# export MV2_ENABLE_AFFINITY=1
3667	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3668	# if [[ "$sgi_feature" = ice2 ]]
3669	# then
3670	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3671	# else
3672	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3673	# fi
3674	if [[ $use_openmp = true ]]
3675	then
3676	unset MV2_CPU_MAPPING
3677	export MV2_ENABLE_AFFINITY=0
3678	fi
3679	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3680	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3681	if [[ $use_openmp = true ]]
3682	then
3683	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3684	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3685	else
3686	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3687	fi
3688	elif [[ "$mpilib" = impi ]]
3689	then
3690	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3691	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3692	fi
3693	elif [[ $host = lccrayf ]]
3694	then
3695	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3696	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3697	then
3698	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3699	elif [[ $host = lcflow ]]
3700	then
3701	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3702	elif [[ $host = lcsb ]]
3703	then
3704	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3705	elif [[ $host = lckiaps ]]
3706	then
3707	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3708	elif [[ $host = lckyu* ]]
3709	then
3710	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3711	else
3712	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3713	fi
3714	else
3715
3716	# currently there is no full MPI-2 support on ICE and XT4
3717	(( iia = $numprocs_atmos / $threads_per_task ))
3718	(( iio = $numprocs_ocean / $threads_per_task ))
3719	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3720	printf "\n using $coupled_mode coupling"
3721	printf "\n\n"
3722
3723	if [[ $coupled_mode = "mpi2" ]]
3724	then
3725	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3726	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3727	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3728	then
3729
3730	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3731	then
3732	# export MPI_LAUNCH_TIMEOUT=360
3733	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3734	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3735	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3736	then
3737	# ulimit -s 300000 # A too large stack size causes problems
3738	# export MV2_NUM_PORTS=2
3739	# export MV2_CPU_MAPPING=0:1:2:3
3740	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3741	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3742	fi
3743
3744	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3745	then
3746
3747	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3748	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3749
3750	else
3751	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3752	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3753	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3754	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3755	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3756	fi
3757	wait
3758
3759	else
3760
3761	echo "coupled_run $iia $iio" > runfile_atmos
3762	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3763	then
3764
3765	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3766	then
3767	# export MPI_LAUNCH_TIMEOUT=360
3768	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3769	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3770	then
3771	# ulimit -s 300000 # A too large stack size causes problems
3772	# export MV2_NUM_PORTS=2
3773	# export MV2_CPU_MAPPING=0:1:2:3
3774	mpiexec ./a.out $ROPTS < runfile_atmos
3775	fi
3776
3777	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3778	then
3779
3780	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3781
3782	elif [[ $host = lck \|\| $host = lckordi ]]
3783	then
3784
3785	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3786
3787	elif [[ $host = lckyu* ]]
3788	then
3789
3790	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3791
3792	fi
3793	wait
3794	fi
3795
3796	fi
3797	elif [[ $host = lckyoto ]]
3798	then
3799	set -xv
3800	export P4_RSHCOMMAND=plesh
3801	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3802	if [[ "$ENVIRONMENT" = BATCH ]]
3803	then
3804	if [[ "$cond2" = fujitsu ]]
3805	then
3806	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3807	elif [[ "cond2" = pgi ]]
3808	then
3809	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3810	else
3811	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3812	fi
3813	else
3814	if [[ "$cond2" = "" ]]
3815	then
3816	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3817	else
3818	mpirun -np $numprocs ./a.out $ROPTS
3819	fi
3820	fi
3821	set +xv
3822	elif [[ $host = lctit ]]
3823	then
3824	export OMP_NUM_THREADS=$threads_per_task
3825	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3826	if [[ "$threads_per_task" != 1 ]]
3827	then
3828	export MV2_ENABLE_AFFINITY=0
3829	fi
3830	echo "----- PBS_NODEFILE content:"
3831	cat $PBS_NODEFILE
3832	echo "-----"
3833	(( ii = $numprocs / $threads_per_task ))
3834	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3835	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3836	else
3837	mpprun -n $numprocs a.out $ROPTS
3838	fi
3839	[[ $? != 0 ]] && execution_error=true
3840
3841
3842	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3843	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3844	then
3845	apprentice
3846	fi
3847	else
3848	a.out $ROPTS
3849	fi
3850	fi
3851	if [[ $? != 0 \|\| $execution_error = true ]]
3852	then
3853
3854	# ABBRUCH BEI LAUFZEITFEHLER
3855	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3856	printf "\n +++ runtime error occured"
3857	locat=execution
3858	exit
3859	else
3860	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3861	printf "\n$striche\n *** execution finished \n"
3862
3863	# Stop the dvr streaming server and process the dvr output in order
3864	# to create dvrs- and html-files containing all streams
3865	if [[ "$dvrserver_id" != "" ]]
3866	then
3867	kill $dvrserver_id
3868	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3869
3870	# If there is a directory, data have been output by the
3871	# streaming server. Otherwise, user has chosen dvrp_output=local
3872	if [[ -d DATA_DVR ]]
3873	then
3874
3875	# Add the current dvr configuration file to the dvr output
3876	# directory
3877	cp .dvrserver.config DATA_DVR
3878
3879	# Process the dvr output (option -s for also generating
3880	# sequence mode data)
3881	process_dvr_output -d DATA_DVR -f $fname -s
3882
3883	else
3884
3885	# Process the local output
3886	process_dvr_output -l -d DATA_DVR -f $fname
3887
3888	fi
3889
3890	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3891	then
3892
3893	# Process dvr output generated in local mode (dvrp_output=local)
3894	process_dvr_output -l -d DATA_DVR -f $fname
3895
3896	fi
3897	fi
3898
3899
3900
3901	# Call of combine_plot_fields in order to merge single files written
3902	# by each PE into one file.
3903	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3904	then
3905	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3906	printf "\n 2d- and/or 3d-data may be incomplete!"
3907	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3908	elif [[ "$combine_plot_fields" == true ]]
3909	then
3910	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3911	combine_plot_fields${block}.x
3912	else
3913	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3914	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3915	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3916	fi
3917
3918
3919
3920	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3921	(( i = 0 ))
3922	while (( i < ioc ))
3923	do
3924	(( i = i + 1 ))
3925	if (( i == 1 ))
3926	then
3927	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3928	fi
3929	printf "\n >>> ${out_command[$i]}"
3930	eval ${out_command[$i]}
3931	if (( i == ioc ))
3932	then
3933	printf "\n$striche\n"
3934	fi
3935	done
3936
3937
3938	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3939	if [[ $do_trace = true ]]
3940	then
3941	printf "\n\n"
3942	ls -al
3943	fi
3944
3945
3946
3947	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3948	(( i = 0 ))
3949	while (( i < iout ))
3950	do
3951	(( i = i + 1 ))
3952	if (( i == 1 ))
3953	then
3954	printf "\n\n *** saving OUTPUT-files:\n$striche"
3955	fi
3956
3957	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3958	files_for_pes=false; filetyp=file
3959	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3960	then
3961	files_for_pes=true; filetyp=directory
3962	actionout[$i]=""
3963	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3964	then
3965	actionout[$i]=""
3966	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3967	then
3968	files_for_pes=true; filetyp=directory
3969	actionout[$i]="ar"
3970	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3971	then
3972	actionout[$i]="ar"
3973	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3974	then
3975	files_for_pes=true; filetyp=directory
3976	actionout[$i]="fl"
3977	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3978	then
3979	actionout[$i]="fl"
3980	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3981	then
3982	files_for_pes=true; filetyp=directory
3983	actionout[$i]="tr"
3984	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3985	then
3986	actionout[$i]="tr"
3987	fi
3988
3989	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3990	then
3991	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3992	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3993	then
3994	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3995	else
3996
3997
3998	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3999	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4000	# REMOTE-RECHNUNGEN
4001	if [[ "${actionout[$i]}" = tr ]]
4002	then
4003	if [[ $localhost != $fromhost ]]
4004	then
4005	if [[ $files_for_pes = false ]]
4006	then
4007	cps=""
4008	cst=""
4009	else
4010	cps=-c
4011	cst="/"
4012	fi
4013	if [[ $localhost = nech ]]
4014	then
4015
4016	# TRANSFER IN EIGENSTAENDIGEM JOB
4017	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4018	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4019	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4020	if [[ $files_for_pes = false ]]
4021	then
4022	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4023	else
4024	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4025	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4026	fi
4027
4028	echo "set -x" > transfer_${localout[$i]}
4029	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4030
4031	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4032	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4033	printf "\n or higher cycle\n"
4034	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4035
4036	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4037
4038	if [[ $localhost = nech ]]
4039	then
4040	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4041	else
4042	if [[ "$LOGNAME" = b323013 ]]
4043	then
4044	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4045	else
4046	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4047	fi
4048	fi
4049
4050	else
4051
4052	# TRANSFER INNERHALB DIESES JOBS
4053	transfer_failed=false
4054	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4055	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4056	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4057	[[ $? != 0 ]] && transfer_failed=true
4058
4059	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4060	# LOKALER MASCHINE ANLEGEN
4061	if [[ $transfer_failed = true ]]
4062	then
4063	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4064	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4065
4066	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4067	# ANLEGEN.
4068	eval local_catalog=${pathout[$i]}
4069	if [[ ! -d $local_catalog ]]
4070	then
4071	printf " *** local directory does not exist. Trying to create:\n"
4072	printf " $local_catalog \n"
4073	mkdir -p $local_catalog
4074	fi
4075	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4076	transfer_problems=true
4077	fi
4078	fi
4079	else
4080
4081	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4082	actionout[$i]=""
4083	fi
4084	fi
4085
4086
4087	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4088	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4089	# REMOTE-RECHNUNGEN
4090	if [[ "${actionout[$i]}" = tra ]]
4091	then
4092	if [[ $localhost != $fromhost ]]
4093	then
4094	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4095	then
4096
4097	# TRANSFER IN EIGENSTAENDIGEM JOB
4098	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4099	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4100	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4101	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4102
4103	echo "set -x" > transfer_${localout[$i]}
4104	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4105
4106	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4107	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4108	printf "\n or higher cycle\n"
4109	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4110
4111	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4112
4113	if [[ $localhost = nech ]]
4114	then
4115	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4116	else
4117	if [[ $LOGNAME = b323013 ]]
4118	then
4119	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4120	else
4121	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4122	fi
4123	fi
4124
4125	else
4126
4127	# TRANSFER INNERHALB DIESES JOBS
4128	transfer_failed=false
4129	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4130	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4131	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4132	[[ $? != 0 ]] && transfer_failed=true
4133
4134	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4135	# LOKALER MASCHINE ANLEGEN
4136	if [[ $transfer_failed = true ]]
4137	then
4138	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4139	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4140
4141	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4142	# ANLEGEN
4143	eval local_catalog=${pathout[$i]}
4144	if [[ ! -d $local_catalog ]]
4145	then
4146	printf " *** local directory does not exist. Trying to create:\n"
4147	printf " $local_catalog \n"
4148	mkdir -p $local_catalog
4149	fi
4150
4151	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4152	transfer_problems=true
4153	fi
4154	fi
4155	else
4156
4157	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4158	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4159	actionout[$i]=a
4160	fi
4161	fi
4162
4163
4164	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4165	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4166	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4167	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4168	if [[ "${actionout[$i]}" = fl ]]
4169	then
4170	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4171	chmod g+rx $tmp_data_catalog
4172	if [[ $files_for_pes = false ]]
4173	then
4174	printf "\n >>> OUTPUT: ${localout[$i]} to"
4175	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4176	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4177	else
4178	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4179	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4180	mkdir $tmp_data_catalog/${frelout[$i]}
4181	cd ${localout[$i]}
4182	for file in $(ls *)
4183	do
4184	ln -f $file $tmp_data_catalog/${frelout[$i]}
4185	done
4186	cd $TEMPDIR
4187	fi
4188
4189
4190	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4191	if [[ $store_on_archive_system = true ]]
4192	then
4193
4194	if [[ $archive_system = asterix ]]
4195	then
4196	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4197	if [[ $files_for_pes = false ]]
4198	then
4199	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4200	else
4201	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4202	fi
4203	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4204	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4205	echo "then" >> archive_${frelout[$i]}
4206	echo " do_stageout=false" >> archive_${frelout[$i]}
4207	echo "else" >> archive_${frelout[$i]}
4208	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4209	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4210	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4211	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4212	if [[ $files_for_pes = false ]]
4213	then
4214	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4215	else
4216	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4217	fi
4218	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4219	echo "fi" >> archive_${frelout[$i]}
4220	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4221	elif [[ $archive_system = DMF ]]
4222	then
4223	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4224	if [[ $files_for_pes = false ]]
4225	then
4226	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4227	locat=DMF
4228	exit
4229	else
4230	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4231	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4232	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4233	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4234	fi
4235	elif [[ $archive_system = tivoli ]]
4236	then
4237	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4238	if [[ $files_for_pes = false ]]
4239	then
4240	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4241	echo "set -x" >> archive_${frelout[$i]}
4242	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4243	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4244	else
4245
4246	echo "set -x" >> archive_${frelout[$i]}
4247	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4248	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4249	cd $tmp_data_catalog
4250	all_files=`ls -1 ${frelout[$i]}/*`
4251	cd - > /dev/null
4252	(( inode = 0 ))
4253	(( tp1 = tasks_per_node + 1 ))
4254	while (( inode < nodes ))
4255	do
4256	# echo "*** all_files = \"$all_files\" "
4257	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4258	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4259	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4260	# echo "*** files = \"$files\" "
4261	# echo "*** all_files = \"$all_files\" "
4262	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4263	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4264	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4265	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4266	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4267	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4268	(( inode = inode + 1 ))
4269	done
4270	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4271	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4272	fi
4273	elif [[ $archive_system = ut ]]
4274	then
4275	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4276	if [[ $files_for_pes = false ]]
4277	then
4278	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4279	echo "set -x" >> archive_${frelout[$i]}
4280	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4281	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4282	else
4283
4284	echo "set -x" >> archive_${frelout[$i]}
4285	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4286	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4287	cd $tmp_data_catalog
4288	all_files=`ls -1 ${frelout[$i]}/*`
4289	cd - > /dev/null
4290	(( inode = 0 ))
4291	(( tp1 = tasks_per_node + 1 ))
4292	while (( inode < nodes ))
4293	do
4294	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4295	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4296	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4297	(( inode = inode + 1 ))
4298	done
4299	fi
4300	elif [[ $archive_system = none ]]
4301	then
4302	printf " +++ archiving on $localhost not available!\n"
4303	fi
4304
4305	if [[ $archive_system != none ]]
4306	then
4307	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4308	then
4309	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4310	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4311	elif [[ $localhost = nech ]]
4312	then
4313	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4314	fi
4315	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4316	fi
4317	else
4318	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4319	fi
4320
4321
4322	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4323	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4324	if [[ $files_for_pes = false ]]
4325	then
4326	cat /dev/null > ${pathout[$i]}
4327	else
4328	mkdir -p ${pathout[$i]}
4329	fi
4330
4331	fi
4332
4333
4334	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4335	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4336	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4337	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4338	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4339	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4340	if [[ "${actionout[$i]}" = ar ]]
4341	then
4342	if [[ $files_for_pes = false ]]
4343	then
4344	printf "\n >>> OUTPUT: ${localout[$i]} to"
4345	printf "\n ${pathout[$i]}"
4346	printf "\n File will be copied to archive-system ($archive_system) !\n"
4347	else
4348	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4349	printf "\n ${pathout[$i]}"
4350	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4351	fi
4352	mv ${localout[$i]} ${frelout[$i]}
4353
4354	file_saved=false
4355
4356	if [[ $archive_system = asterix ]]
4357	then
4358	do_stageout=true
4359	(( stageout_anz = 0 ))
4360	while [[ $do_stageout = true ]]
4361	do
4362	if [[ $files_for_pes = false ]]
4363	then
4364	stageout ${frelout[$i]} > STAGE_OUTPUT
4365	else
4366	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4367	fi
4368	cat STAGE_OUTPUT
4369	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4370	then
4371	file_saved=true
4372	do_stageout=false
4373	else
4374	if [[ $files_for_pes = false ]]
4375	then
4376	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4377	else
4378	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4379	fi
4380	(( stageout_anz = stageout_anz + 1 ))
4381	if (( stageout_anz == 10 ))
4382	then
4383	printf "\n +++ stoped after 10 unsuccessful tries!"
4384	archive_save=false
4385	do_stageout=false
4386	else
4387	printf "\n *** new try to store on archive after 15 min:"
4388	sleep 900
4389	fi
4390	fi
4391	done
4392	elif [[ $archive_system = DMF ]]
4393	then
4394	if [[ $files_for_pes = false ]]
4395	then
4396	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4397	locat=DMF
4398	exit
4399	else
4400	rm -rf $ARCHIVE/${frelout[$i]}
4401	cp -r ${frelout[$i]} $ARCHIVE
4402	fi
4403	file_saved=true
4404	elif [[ $archive_system = tivoli ]]
4405	then
4406	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4407	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4408	# GELEGT WERDEN
4409	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4410	chmod g+rx $tmp_data_catalog
4411	if [[ $files_for_pes = false ]]
4412	then
4413	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4414	else
4415	mkdir $tmp_data_catalog/${frelout[$i]}
4416	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4417	fi
4418
4419	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4420	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4421	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4422	if [[ $files_for_pes = false ]]
4423	then
4424	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4425	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4426	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4427	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4428	else
4429	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4430	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4431	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4432	fi
4433
4434	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4435	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4436	file_saved=true
4437
4438	elif [[ $archive_system = ut ]]
4439	then
4440	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4441	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4442	# GELEGT WERDEN
4443	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4444	chmod g+rx $tmp_data_catalog
4445	if [[ $files_for_pes = false ]]
4446	then
4447	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4448	else
4449	mkdir $tmp_data_catalog/${frelout[$i]}
4450	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4451	fi
4452
4453	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4454	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4455	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4456	if [[ $files_for_pes = false ]]
4457	then
4458	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4459	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4460	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4461	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4462	else
4463	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4464	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4465	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4466	fi
4467
4468	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4469	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4470	file_saved=true
4471
4472	else
4473	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4474	archive_save=false
4475	fi
4476	if [[ $file_saved = true ]]
4477	then
4478	if [[ $files_for_pes = false ]]
4479	then
4480	cat /dev/null > ${pathout[$i]}
4481	else
4482	mkdir -p ${pathout[$i]}
4483	fi
4484	fi
4485	fi
4486
4487	# APPEND AUF LOKALER MASCHINE
4488	if [[ "${actionout[$i]}" = "a" ]]
4489	then
4490	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4491	then
4492	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4493	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4494	else
4495	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4496	cat ${localout[$i]} >> ${pathout[$i]}
4497	fi
4498	fi
4499
4500	# KOPIEREN AUF LOKALER MASCHINE
4501	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4502	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4503	then
4504
4505	# KOPIEREN AUF EINPROZESSORMASCHINE
4506	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4507	then
4508	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4509	if [[ $link_local_output = true ]]
4510	then
4511	printf " using ln -f\n"
4512	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4513	fi
4514	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4515	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4516	then
4517	if [[ $link_local_output = true ]]
4518	then
4519	printf " ln failed, using cp...\n"
4520	fi
4521	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4522	fi
4523	else
4524	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4525	if [[ $link_local_output = true ]]
4526	then
4527	printf " using ln -f\n"
4528	ln -f ${localout[$i]} ${pathout[$i]}
4529	fi
4530	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4531	if [[ ! -f "${pathout[$i]}" ]]
4532	then
4533	if [[ $link_local_output = true ]]
4534	then
4535	printf " ln failed, using cp...\n"
4536	fi
4537	cp ${localout[$i]} ${pathout[$i]}
4538	fi
4539	fi
4540
4541	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4542	then
4543
4544	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4545	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4546	# WIRD DANN KOPIERT
4547	# PER MOVE UMBENANNT WERDEN
4548	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4549	if [[ $link_local_output = true ]]
4550	then
4551	printf " using ln -f\n"
4552	mkdir ${pathout[$i]}
4553	cd ${localout[$i]}
4554	for file in $(ls *)
4555	do
4556	ln -f $file ${pathout[$i]}
4557	done
4558	cd $TEMPDIR
4559	fi
4560	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4561	if [[ ! -f "${pathout[$i]}/_0000" ]]
4562	then
4563	if [[ $link_local_output = true ]]
4564	then
4565	printf " ln failed for .../_0000, using cp...\n"
4566	fi
4567	cp -r ${localout[$i]} ${pathout[$i]}
4568	fi
4569
4570	fi
4571	fi
4572	done
4573	if (( i != 0 ))
4574	then
4575	if [[ $transfer_problems = true ]]
4576	then
4577	printf "\n$striche\n *** OUTPUT-files saved"
4578	printf "\n +++ WARNING: some data transfers failed! \n"
4579	else
4580	printf "\n$striche\n *** all OUTPUT-files saved \n"
4581	fi
4582	fi
4583
4584
4585	# EVENTUELL FOLGEJOB STARTEN
4586	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4587	if [[ -f CONTINUE_RUN ]]
4588	then
4589
4590	if [[ $archive_save = true ]]
4591	then
4592
4593	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4594	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4595	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4596	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4597	# HANDEN
4598	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4599	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4600	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4601	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4602	then
4603	mc=`echo $mc \| sed 's/#/f/g'`
4604	fi
4605
4606
4607	# JOB STARTEN
4608	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4609	echo " $mc"
4610	printf "\n$striche\n"
4611	if [[ $localhost != $fromhost ]]
4612	then
4613
4614	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4615	then
4616	echo "*** ssh will be used to initiate restart-runs!"
4617	echo " return_addres=\"$return_addres\" "
4618	echo " return_username=\"$return_username\" "
4619	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4620	then
4621	if [[ $localhost = ibmh ]]
4622	then
4623	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4624	else
4625	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4626	fi
4627	else
4628	if [[ $localhost = ibmkisti ]]
4629	then
4630	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4631	else
4632	if [[ $localhost = lcflow ]]
4633	then
4634	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4635	else
4636	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4637	fi
4638	fi
4639	fi
4640	else
4641	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4642	locat=restart; exit
4643	fi
4644
4645	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4646	# DER AKTUELLE JOB ENDET
4647	if [[ $queue = special1q ]]
4648	then
4649	sleep 120
4650	else
4651	sleep 30
4652	fi
4653
4654	else
4655
4656	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4657	# RUFEN WERDEN, AUSSER AUF lcfimm
4658	cd $LOCAL_PWD
4659	if [[ $localhost = lcfimm ]]
4660	then
4661	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4662	elif [[ $localhost = lckyuh ]]
4663	then
4664	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4665	printf "\n please restart job manually using command:\n"
4666	printf "\n \"$mc\" "
4667	else
4668	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4669	fi
4670	cd - > /dev/null
4671	fi
4672	if [[ $localhost = lckyuh ]]
4673	then
4674	printf "\n$striche\n *** restart-run to be initiated manually\n"
4675	else
4676	printf "\n$striche\n *** restart-run initiated \n"
4677	fi
4678
4679
4680	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4681	# GEHOLT WORDEN SIND, LOESCHEN
4682	(( i = 0 ))
4683	while (( i < iin ))
4684	do
4685	(( i = i + 1 ))
4686	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4687	then
4688	rm -r $tmp_data_catalog/${frelin[$i]}
4689	fi
4690	done
4691
4692	else
4693
4694	printf "\n +++ no restart-run possible, since errors occured"
4695	printf "\n during the archive process"
4696	fi
4697
4698	fi
4699
4700
4701
4702	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4703	if [[ "$email_notification" != "none" ]]
4704	then
4705
4706	if [[ $localhost != $fromhost ]]
4707	then
4708	if [[ -f CONTINUE_RUN ]]
4709	then
4710	echo "PALM restart run necessary" > email_text
4711	echo "description header of actual run:" >> email_text
4712	cat CONTINUE_RUN >> email_text
4713	echo "mrun-command to restart:" >> email_text
4714	echo "$mc" >> email_text
4715	else
4716	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4717	fi
4718	mail $email_notification < email_text
4719	printf "\n *** email notification sent to \"$email_notification\" "
4720	fi
4721	fi
4722
4723
4724
4725	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4726	cd $HOME
4727	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4728
4729	else
4730
4731
4732	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4733	# CHENDE AKTIONEN DURCHGEFUEHRT
4734
4735	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4736	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4737	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4738	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4739	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4740	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4741	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4742	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4743	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4744	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4745	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4746	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4747	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4748	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4749	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4750	if [[ $use_openmp = true ]]
4751	then
4752	mrun_com=${mrun_com}" -O $threads_per_task"
4753	fi
4754	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4755	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4756	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4757	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4758	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4759	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4760	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4761	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4762	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4763	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4764	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4765	if [[ $do_remote = true ]]
4766	then
4767	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4768	fi
4769
4770
4771	# create executable for batch job
4772	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4773	then
4774
4775	printf "\n *** creating the executable for batch job\n"
4776
4777	# method only works for batch jobs on local hosts
4778	if [[ $host != $localhost ]]
4779	then
4780	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4781	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4782	locat=create_executable; exit
4783	fi
4784
4785	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4786	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4787
4788	cp $make_depository .
4789	tar -xf $make_depository > /dev/null 2>&1
4790	cp ../* . > /dev/null 2>&1
4791
4792	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4793
4794	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4795	then
4796	printf "\n +++ error occured while compiling or linking"
4797	locat=compile
4798	exit
4799	fi
4800
4801	mv a.out ..
4802	cd - > /dev/null 2>&1
4803	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4804
4805	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4806
4807	fi
4808
4809
4810	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4811	jobfile=jobfile.$RANDOM
4812
4813
4814	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4815	echo "mkdir $TEMPDIR" >> $jobfile
4816	echo "cd $TEMPDIR" >> $jobfile
4817
4818
4819	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4820	if [[ $do_trace = true ]]
4821	then
4822	echo "set -x" >> $jobfile
4823	else
4824	echo "set +vx" >> $jobfile
4825	fi
4826
4827
4828	# initialize the environment and load modules
4829	if [[ "$init_cmds" != "" ]]
4830	then
4831	echo "$init_cmds" >> $jobfile
4832	fi
4833	if [[ "$module_calls" != "" ]]
4834	then
4835	echo "$module_calls" >> $jobfile
4836	fi
4837
4838
4839	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4840	# DATEI FUER DEN JOB
4841	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayf ]]
4842	then
4843
4844	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4845	# KOPIEREN
4846	if [[ $restart_run != true ]]
4847	then
4848	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4849	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4850	fi
4851
4852	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4853	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4854	echo "set -x" >> $jobfile
4855	if [[ $host = $localhost ]]
4856	then
4857
4858	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4859	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4860	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4861
4862	else
4863	if [[ $host != ibmkisti ]]
4864	then
4865	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4866	else
4867	# on KISTI's IBM firewall is only opened on interactive node
4868	echo "localdir=\`pwd\`" >> $jobfile
4869	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4870	fi
4871	fi
4872	echo "export SOURCES_COMPLETE=true" >> $jobfile
4873
4874	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4875	# ARBEITSVERZEICHNIS VERSCHIEBEN
4876	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4877	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4878	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4879	echo "execute_mrun=true" >> $jobfile
4880	echo " " >> $jobfile
4881
4882	else
4883
4884	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4885	# SOWIE GEGEBENENFALLS DES MAKEFILES
4886	if [[ $do_compile = true ]]
4887	then
4888
4889	source_catalog=SOURCES_FOR_RUN_$fname
4890
4891	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4892	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4893	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4894	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4895	echo "export SOURCES_COMPLETE=true" >> $jobfile
4896	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4897
4898	for filename in $source_list
4899	do
4900	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4901	echo "cat > $filename << \"%END%\"" >> $jobfile
4902	cat $source_catalog/$filename >> $jobfile
4903	echo " " >> $jobfile
4904	echo "%END%" >> $jobfile
4905	echo " " >> $jobfile
4906	done
4907
4908	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4909	echo "cat > Makefile << \"%END%\"" >> $jobfile
4910	cat $source_catalog/Makefile >> $jobfile
4911	echo " " >> $jobfile
4912	echo "%END%" >> $jobfile
4913	echo " " >> $jobfile
4914
4915	echo "cd - > /dev/null" >> $jobfile
4916
4917	fi
4918
4919
4920	# ABSPEICHERN DER KONFIGURATIONSDATEI
4921	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4922	# Lines with #$ coming from the svn keyword substitution are
4923	# removed from the config file in order to avoid problems
4924	# with the SGE batch system
4925	echo "cat > $config_file << \"%END%\"" >> $jobfile
4926	if [[ $host = lckyuh ]]
4927	then
4928	# no cross compiler on compute node
4929	sed 's/frtpx/frt/g' $config_file >> $jobfile
4930	else
4931	sed 's/#$.*//g' $config_file >> $jobfile
4932	fi
4933	echo "%END%" >> $jobfile
4934	echo " " >> $jobfile
4935
4936
4937	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4938	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4939	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4940	if [[ $host = lckyuh ]]
4941	then
4942	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4943	else
4944	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4945	fi
4946	echo "%END%" >> $jobfile
4947	echo "chmod u+x $mrun_script_name" >> $jobfile
4948	echo "execute_mrun=true" >> $jobfile
4949	echo " " >> $jobfile
4950
4951	fi
4952
4953
4954	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4955	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4956	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4957	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4958	if [[ $do_remote = true ]]
4959	then
4960	(( i = 0 ))
4961	while (( i < iin ))
4962	do
4963	(( i = i + 1 ))
4964	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4965	if [[ "${transin[$i]}" = job ]]
4966	then
4967	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4968	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4969	echo " " >> $jobfile
4970	echo "%END%" >> $jobfile
4971	else
4972	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4973	fi
4974
4975	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4976	echo "if [[ \$? = 1 ]]" >> $jobfile
4977	echo "then" >> $jobfile
4978	echo " echo \" \" " >> $jobfile
4979	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4980	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4981	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4982	echo " execute_mrun=false" >> $jobfile
4983	echo "fi" >> $jobfile
4984	done
4985	fi
4986
4987	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4988	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4989	echo "LOCAL_PWD=$working_directory" >> $jobfile
4990	echo "export LOCAL_PWD" >> $jobfile
4991
4992	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4993	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4994	echo "export LOCAL_MRUN_PATH" >> $jobfile
4995
4996	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4997	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4998	then
4999	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5000	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5001	then
5002	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5003	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5004	fi
5005
5006	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5007	echo "set -x" >> $jobfile
5008	echo "queue=$queue" >> $jobfile
5009	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5010	echo 'ls -al; echo `pwd`' >> $jobfile
5011	echo "cd \$HOME" >> $jobfile
5012	echo "rm -rf $TEMPDIR" >> $jobfile
5013
5014
5015
5016
5017	# JOB PER SUBJOB STARTEN
5018	if [[ $silent = false ]]
5019	then
5020	printf "\n "
5021	else
5022	printf "\n\n"
5023	fi
5024
5025	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5026	rm -rf $jobfile
5027
5028
5029	fi # ENDE REMOTE-TEIL
5030
5031
5032
5033	# ENDE DER PROZEDUR

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