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source: palm/trunk/SCRIPTS/mrun @ 1110

Last change on this file since 1110 was 1109, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1109 2013-03-05 07:08:40Z maronga $
29	#
30	# 1108 2013-03-05 07:03:32Z raasch
31	# bugfix for coupled runs on lckyut/lckyuh
32	#
33	# 1106 2013-03-04 05:31:38Z raasch
34	# --stdin argument for mpiexec on lckyuh
35	# -y and -Y settings output to header
36	#
37	# 1103 2013-02-20 02:15:53Z raasch
38	# default script runs again under ksh, because of unsolved problems with read
39	# from stdin: when bash script is called from a ksh, message "read error: 0:
40	# Resource temporarily unavailable" appears and script does not stop,
41	# further bash compatibility adjustments,
42	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
43	# on lckyuh, but mrun does not terminate and issues a warning instead
44	#
45	# 1101 2013-02-17 10:20:21Z raasch
46	# script now running under bash instead of ksh, which required small adjustments
47	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
48	# read from stdin),
49	# cross compilername on lckyuh compute nodes replaced by real compiler name
50	#
51	# 1099 2013-02-10 01:47:43Z raasch
52	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
53	# and for Forwind cluster (lcflow)
54	# small further adjustments for lckyut
55	#
56	# 1094 2013-02-03 01:52:12Z raasch
57	# explicit ssh/scp port can be set in config file with environment variable
58	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
59	# decalpha parts (yonsei) removed
60	#
61	# 2013-02-02 07:06:13Z raasch
62	# adjustments for Kyushu-University computing center (lckyut - tatara)
63	#
64	# 1083 2013-01-04 10:22:09Z maronga
65	# bugfix in parameter file check (read %cpp_options was missing)
66	#
67	# 1069 2012-11-28 16:18:43Z maronga
68	# bugfix: coupling mode was always set to mpi2, typos removed
69	#
70	# 1058 2012-11-21 07:00:35Z raasch
71	# Intel inspector (inspxe) is given the number of PEs instead of the number of
72	# nodes
73	#
74	# 1046 2012-11-09 14:38:45Z maronga
75	# code put under GPL (PALM 3.9)
76	#
77	# 21/03/94 - Siggi - first version finished
78	# 03/03/94 - Siggi - script development started
79	#
80	#--------------------------------------------------------------------------------#
81	# mrun - script for running PALM jobs
82	#--------------------------------------------------------------------------------#
83
84
85
86	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
87
88	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
89	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
90	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
91
92	AddFilenames=""
93	additional_conditions=""
94	add_source_path=""
95	afname=""
96	archive_save=true
97	archive_system=none
98	check_namelist_files=true
99	combine_plot_fields=true
100	compiler_name=""
101	cond1=""
102	cond2=""
103	config_file=.mrun.config
104	coupled_dist=""
105	coupled_mode="mpi1"
106	cpp_opts=""
107	cpp_options=""
108	cpumax=0
109	cpurest=0
110	delete_temporary_catalog=true
111	do_batch=false
112	do_compile=true
113	do_remote=false
114	do_stagein=true
115	do_stageout=true
116	do_trace=false
117	email_notification="none"
118	exclude=""
119	executable=""
120	execution_error=false
121	fimm=false
122	fname=test
123	fromhost=""
124	global_revision=""
125	group_number=none
126	host=""
127	host_file=""
128	hp=""
129	ignore_archive_error=false
130	input_list=""
131	interpreted_config_file=""
132	job_catalog="~/job_queue"
133	job_on_file=""
134	keep_data_from_previous_run=false
135	link_local_input=false
136	link_local_output=false
137	localhost_realname=$(hostname)
138	local_compile=false
139	local_dvrserver_running=.FALSE.
140	locat=normal
141	mainprog=""
142	makefile=""
143	max_par_io_str=""
144	mc=$0
145	while [[ $(echo $mc \| grep -c "/") != 0 ]]
146	do
147	mc=`echo $mc \| cut -f2- -d"/"`
148	done
149	module_calls=""
150	mrun_script_name=$mc
151	netcdf_inc=""
152	netcdf_lib=""
153	netcdf_support=false
154	node_usage=default
155	numprocs=""
156	numprocs_atmos=0
157	numprocs_ocean=0
158	OOPT=""
159	openmp=false
160	output_list=""
161	package_list=""
162	punkte="..........................................................."
163	queue=none
164	read_from_config=""
165	restart_run=false
166	if [[ `hostname` = rte10 ]]
167	then
168	return_addres=133.5.185.60
169	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
170	elif [[ `hostname` = climate0 ]]
171	then
172	return_addres=165.132.26.68
173	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
174	elif [[ `hostname` = urban00 ]]
175	then
176	return_addres=147.46.30.151
177	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
178	else
179	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
180	fi
181	return_password=""
182	return_username=$LOGNAME
183	remotecall=false
184	remote_username=""
185	run_coupled_model=false
186	run_mode=""
187	scirocco=false
188	store_on_archive_system=false
189	striche=" ----------------------------------------------------------------------------"
190	silent=false
191	source_list=""
192	source_path=SOURCE
193	tasks_per_node=""
194	threads_per_task=1
195	tmpcreate=false
196	tmp_data_catalog=""
197	transfer_problems=false
198	usern=$LOGNAME
199	use_openmp=false
200	version="MRUN 2.0 Rev$Rev: 1109 $"
201	working_directory=`pwd`
202	TOPT=""
203	XOPT=""
204	zeit=$( date \| cut -c 12-19 )
205
206	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
207	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
208
209
210
211
212	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
213	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
214
215	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
216	# EXPORTIERT WERDEN
217	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
218	export group_number input_list memory numprocs output_list queue run_mode
219
220
221
222	# FEHLERBEHANDLUNG
223	# BEI EXIT:
224	trap 'rm -rf $working_directory/tmp_mrun
225	if [[ $locat != localhost ]]
226	then
227	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
228	# then
229	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
230	#MRUN-calls on $localhost
231	#
232	#date and time user localhost remotehost termination mrun-command
233	#--------------------------------------------------------------------------------------------------------------------
234	#%STATEND%
235	# chmod 666 ${mrun_path}/statistik/mrun_statistik
236	# fi
237	#
238	# # EINTRAG IN DIE STATISTIK-DATEI
239	# string1=`date` #-L35
240	# string2=$usern #-L12
241	# string3=$localhost_realname #-L12
242	# string4=$host #-L12
243	# string5=$locat #-L12
244	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
245	# then
246	# if [[ $do_batch = true ]]
247	# then
248	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
249	# else
250	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
251	# fi
252	# fi
253	echo " " > /dev/null
254	fi
255
256	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
257	then
258
259	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
260	(( i = 0 ))
261	while (( i < iec ))
262	do
263	(( i = i + 1 ))
264	printf "\n *** Execution of ERROR-command:\n"
265	printf " >>> ${err_command[$i]}\n"
266	eval ${err_command[$i]}
267	done
268	if [[ -n $interpreted_config_file ]]
269	then
270	rm -rf $interpreted_config_file
271	fi
272	if [[ -n .mrun_environment ]]
273	then
274	rm -rf .mrun_environment
275	fi
276	if [[ $tmpcreate = true ]]
277	then
278	printf "\n *** Contents of \"$TEMPDIR\":\n"
279	ls -al; cd
280	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
281	fi
282	if [[ "$dvrserver_id" != "" ]]
283	then
284	echo "+++ killing dvrserver_id=$dvrserver_id"
285	kill $dvrserver_id
286	fi
287	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
288	then
289	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
290	fi
291	printf "\n\n+++ MRUN killed \n\n"
292	elif [[ $locat != control_c ]]
293	then
294	printf "\n\n --> all actions finished\n\n"
295	printf " Bye, bye $usern !!\n\n"
296	fi' exit
297
298
299	# BEI TERMINAL-BREAK:
300	trap 'rm -rf $working_directory/tmp_mrun
301	rm -rf $working_directory/tmp_check_namelist_files
302	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
303	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
304	then
305	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
306	fi
307	if [[ "$dvrserver_id" != "" ]]
308	then
309	echo "+++ killing dvrserver_id=$dvrserver_id"
310	kill $dvrserver_id
311	fi
312	printf "\n+++ MRUN killed by \"^C\" \n\n"
313	locat=control_c
314	exit
315	' 2
316
317
318	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
319	# BEEN SET
320	if [[ "$PALM_BIN" = "" ]]
321	then
322	printf "\n +++ environment variable PALM_BIN has not been set"
323	printf "\n please set it to the directory where the PALM scripts are located"
324	locat=palm_bin; exit
325	fi
326	export PATH=$PALM_BIN:$PATH
327
328
329
330	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
331	# FUER FOLGEJOBS BENOETIGT WIRD
332	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
333	do
334	case $option in
335	(a) afname=$OPTARG;;
336	(A) store_on_archive_system=true; mc="$mc -A";;
337	(b) do_batch=true; mc="$mc -b";;
338	(B) delete_temporary_catalog=false; mc="$mc -B";;
339	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
340	(C) restart_run=true; mc="$mc -C";;
341	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
342	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
343	(F) job_on_file="-D"; mc="$mc -F";;
344	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
345	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
346	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
347	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
348	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
349	(I) ignore_archive_error=true; mc="$mc -I";;
350	(k) keep_data_from_previous_run=true; mc="$mc -k";;
351	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
352	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
353	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
354	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
355	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
356	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
357	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
358	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
359	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
360	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
361	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
362	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
363	(S) read_from_config=false; mc="$mc -S";;
364	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
365	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
366	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
367	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
368	(v) silent=true; mc="$mc -v";;
369	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
370	(x) do_trace=true;set -x; mc="$mc -x";;
371	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
372	(y) ocean_file_appendix=true; mc="$mc -y";;
373	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
374	(z) check_namelist_files=false; mc="$mc -z";;
375	(Z) combine_plot_fields=false; mc="$mc -Z";;
376	(\?) printf "\n +++ unknown option $OPTARG \n"
377	printf "\n --> type \"$0 ?\" for available options \n"
378	locat=parameter;exit;;
379	esac
380	done
381
382
383	# EVTL. POSITIONSPARAMETER EINLESEN
384	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
385	(( to_shift = $OPTIND - 1 ))
386	shift $to_shift
387
388	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
389	if [[ "$1" = "?" ]]
390	then
391	(printf "\n *** mrun can be called as follows:\n"
392	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
393	printf "\n Description of available options:\n"
394	printf "\n Option Description Default-Value"
395	printf "\n -a base name of input files equiv. -d"
396	printf "\n -A archiving when using file-attribute fl"
397	printf "\n -b batch-job on local machine ---"
398	printf "\n -B do not delete temporary directory at end ---"
399	printf "\n -c configuration file .mrun.config"
400	printf "\n -d base name of files attached to program test"
401	printf "\n -D preprocessor(cpp)-directives \"\" "
402	printf "\n -F create remote job file only ---"
403	printf "\n -h execution host $localhost_realname"
404	printf "\n -i INPUT control list \"\" "
405	printf "\n -I archiving errors of previous batch-jobs"
406	printf "\n will be ignored"
407	printf "\n -k keep data from previous run"
408	printf "\n -K additional conditions for controling"
409	printf "\n usage of conditional code and"
410	printf "\n env-variables in configuration file \"\" "
411	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
412	printf "\n -M Makefile name Makefile"
413	printf "\n -n node usage (shared/not_shared) depending on -h"
414	printf "\n -o OUTPUT control list \"\" "
415	printf "\n -O use OpenMP ---"
416	printf "\n -p software package list \"\" "
417	printf "\n -q queue \"$queue\" "
418	printf "\n -r run control list (combines -i -o) \"\" "
419	printf "\n -s filenames of routines to be compiled \"\" "
420	printf "\n must end with .f, .f90, .F, or .c !"
421	printf "\n use \"..\" for more than one file and wildcards"
422	printf "\n -s LM compiles all locally modified files"
423	printf "\n -S config file interpreted by shellscript ---"
424	printf "\n -t allowed cpu-time in seconds (batch) 0"
425	printf "\n -T tasks per node depending on -h"
426	printf "\n -u username on remote machine \"\" "
427	printf "\n -v no prompt for confirmation ---"
428	printf "\n -w maximum parallel io streams as given by -X"
429	printf "\n -x tracing of mrun for debug purposes ---"
430	printf "\n -X # of processors (on parallel machines) 1"
431	printf "\n -y add appendix \"_O\" to all local output"
432	printf "\n files (ocean precursor runs followed by"
433	printf "\n coupled atmosphere-ocean runs) ---"
434	printf "\n -Y run coupled model, \"#1 #2\" with"
435	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
436	printf "\n -z disable a priori parameter file check ---"
437	printf "\n -Z skip combine_plot_fields at the end of "
438	printf "\n the simulation ---"
439	printf "\n "
440	printf "\n Possible values of positional parameter <modus>:"
441	printf "\n \"?\" - this outline \n\n") \| more
442	exit
443	elif [[ "$1" != "" ]]
444	then
445	printf "\n +++ positional parameter $1 unknown \n"
446	locat=parameter; exit
447	fi
448
449
450
451	# KURZE STARTMELDUNG
452	printf "\n*** $version "
453	printf "\n will be executed. Please wait ..."
454
455
456
457	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
458	if [[ ! -f $config_file ]]
459	then
460	printf "\n\n +++ configuration file: "
461	printf "\n $config_file"
462	printf "\n does not exist"
463	locat=connect; exit
464	fi
465
466
467	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
468	line=""
469	grep "%host_identifier" $config_file > tmp_mrun
470	while read line
471	do
472	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
473	then
474	HOSTNAME=`echo $line \| cut -d" " -s -f2`
475	host_identifier=`echo $line \| cut -d" " -s -f3`
476	if [[ $localhost_realname = $HOSTNAME ]]
477	then
478	localhost=$host_identifier
479	break
480	fi
481	fi
482	done < tmp_mrun
483
484	if [[ "$localhost" = "" ]]
485	then
486	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
487	printf "\n for local host \"$localhost_realname\"."
488	printf "\n Please add line"
489	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
490	printf "\n to the configuration file."
491	locat=localhost; exit
492	fi
493
494
495	# HOSTSPEZIFISCHE VARIABLEN SETZEN
496	case $localhost_realname in
497	(r1\|r2\|h01\|b01) archive_system=tivoli;;
498	(cs*) archive_system=ut;;
499	(fimm.bccs.uib.no) fimm=true;;
500	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
501	(scirocco) scirocco=true;;
502	esac
503
504
505
506	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
507	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
508	[[ "$afname" = "" ]] && afname=$fname
509
510
511	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
512	if [[ "$run_mode" != "" ]]
513	then
514	input_list="$input_list $run_mode"
515	output_list="$output_list $run_mode"
516	fi
517
518
519	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
520	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
521	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
522	# STARTET)
523	if [[ "$fromhost" = "" ]]
524	then
525	fromhost=$localhost
526	fi
527
528
529	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
530	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
531	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
532	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
533	if [[ -n $host && "$host" != $localhost ]]
534	then
535	do_batch=true
536	do_remote=true
537	case $host in
538	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
539	(*) printf "\n"
540	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
541	printf "\n is not available"
542	locat=nqs; (( iec = 0 )); exit;;
543	esac
544	else
545	host=$localhost
546	fi
547
548
549	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
550	if [[ -n $additional_conditions ]]
551	then
552	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
553	cond1=`echo $additional_conditions \| cut -d" " -f1`
554	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
555	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
556	if [[ -n $dummy ]]
557	then
558	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
559	locat=options; exit
560	fi
561	block=_$cond1
562	[[ -n $cond2 ]] && block=${block}_$cond2
563	fi
564
565
566	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
567	if [[ $run_coupled_model = true ]]
568	then
569
570	if [[ -n $coupled_dist ]]
571	then
572
573	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
574	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
575
576	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
577	then
578
579	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
580	printf "\n PEs (total) : $numprocs"
581	printf "\n PEs (atmosphere): $numprocs_atmos"
582	printf "\n PEs (ocean) : $numprocs_ocean"
583	locat=coupling; exit
584
585	fi
586
587	else
588
589	(( numprocs_ocean = $numprocs / 2 ))
590	(( numprocs_atmos = $numprocs / 2 ))
591
592	fi
593	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
594
595	# GET coupled_mode FROM THE CONFIG FILE
596	line=""
597	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
598	while read line
599	do
600	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
601	then
602	coupled_mode="mpi2"
603	fi
604	done < tmp_mrun
605
606	fi
607
608
609	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
610	# ARCHIVIERUNG FEHLGESCHLAGEN IST
611	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
612	then
613	if [[ $ignore_archive_error = false ]]
614	then
615	printf "\n +++ data archiving of previous run failed"
616	printf "\n see directory \~/job_queue on remote machine"
617	locat=archive; exit
618	else
619	printf "\n +++ warning: data archiving in a previous run failed"
620	printf "\n MRUN continues, trying to get backup copy"
621	fi
622	fi
623
624
625	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
626	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
627	mrun_memory=$memory
628	mrun_group_number=$group_number
629	mrun_cpumax=$cpumax
630	mrun_numprocs=$numprocs
631
632
633	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
634	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
635	if [[ "$read_from_config" = false ]]
636	then
637
638	[[ $silent = false ]] && printf "\n Reading the configuration file... "
639	while read zeile
640	do
641	[[ $silent = false ]] && printf "."
642
643
644	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
645	# ERSETZEN
646	eval zeile=\"$zeile\"
647
648
649	# INTERPRETATION DER ZEILE
650	if [[ "$(echo $zeile)" = "" ]]
651	then
652	# LEERZEILE, KEINE AKTION
653	continue
654
655	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
656	then
657
658	# ZEILE IST KOMMENTARZEILE
659	true
660
661	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
662	then
663
664	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
665	zeile=$(echo $zeile \| cut -c2-)
666	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
667	var=`echo $zeile \| cut -d" " -f1`
668	value=`echo $zeile \| cut -d" " -s -f2`
669	for_host=`echo $zeile \| cut -d" " -s -f3`
670	for_cond1=`echo $zeile \| cut -d" " -s -f4`
671	for_cond2=`echo $zeile \| cut -d" " -s -f5`
672
673	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
674	then
675
676	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
677	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
678	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
679
680
681	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
682	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
683	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
684	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
685	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
686	# KONFIGURATIONSDATEI
687	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
688	then
689	eval $var=\$value
690
691	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
692	if [[ $do_trace = true ]]
693	then
694	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
695	fi
696	fi
697
698	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
699	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
700	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
701	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
702	if [[ $var = host ]]
703	then
704	if [[ -n $host && "$host" != $localhost ]]
705	then
706	do_batch=true
707	do_remote=true
708	case $host in
709	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
710	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
711	printf "\n is not available"
712	locat=nqs; exit;;
713	esac
714	else
715	host=$localhost
716	fi
717	fi
718
719	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
720	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
721	# DEN PROGRAMMEN BENOETIGT WERDEN
722	export $var
723	fi
724
725
726
727
728	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
729	then
730
731	# ZEILE DEFINIERT ERROR-KOMMANDO
732	(( iec = iec + 1 ))
733	zeile=$(echo $zeile \| cut -c4-)
734	err_command[$iec]="$zeile"
735
736	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
737	then
738
739	# ZEILE DEFINIERT INPUT-KOMMANDO
740	(( iic = iic + 1 ))
741	zeile=$(echo $zeile \| cut -c4-)
742	in_command[$iic]="$zeile"
743
744	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
745	then
746
747	# ZEILE DEFINIERT OUTPUT-KOMMANDO
748	(( ioc = ioc + 1 ))
749	zeile=$(echo $zeile \| cut -c4-)
750	out_command[$ioc]="$zeile"
751
752	else
753
754	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
755	# s2a: in/out - Feld
756	# s2b: loc - Feld (optional)
757	# s2c: tr/ar - Feld (optional)
758	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
759	s1=`echo $zeile \| cut -d" " -f1`
760	s2=`echo $zeile \| cut -d" " -s -f2`
761	s2a=$(echo $s2 \| cut -d":" -f1)
762	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
763	then
764	s2b=""
765	s2c=""
766	else
767	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
768	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
769	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
770	fi
771	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
772	s3=`echo $zeile \| cut -d" " -f3`
773	s4=`echo $zeile \| cut -d" " -s -f4`
774	s5=`echo $zeile \| cut -d" " -s -f5`
775	s6=`echo $zeile \| cut -d" " -s -f6`
776
777
778	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
779	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
780	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
781	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
782	# HANDEN SEIN MUSS (D.H. s2b = loc)
783	IFSALT="$IFS"; IFS="$IFS:"
784	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
785	then
786	found=false
787	for actual in $input_list
788	do
789	for formal in $s3
790	do
791	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
792	done
793	done
794	if [[ $found = true ]]
795	then
796	(( iin = iin + 1 ))
797	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
798	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
799	extin[$iin]=$s6
800	fi
801	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
802	then
803	found=false
804	for actual in $output_list
805	do
806	for formal in $s3
807	do
808	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
809	done
810	done
811	if [[ $found = true ]]
812	then
813	(( iout = iout + 1 ))
814	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
815	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
816	fi
817	elif [[ "$s2a" != in && "$s2a" != out ]]
818	then
819	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
820	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
821	locat=connect; exit
822	fi
823	IFS="$IFSALT"
824	fi
825	done < $config_file
826
827	else
828
829
830	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
831	[[ $silent = false ]] && printf "..."
832	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
833	export interpreted_config_file=.icf.$RANDOM
834
835
836
837	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
838	# VERFUEGUNG STELLEN
839	cat > .mrun_environment << %%END%%
840	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
841	config_file = '$config_file', do_remote = '$do_remote',
842	do_trace = '$do_trace', host = '$host',
843	input_list = '$input_list', icf = '$interpreted_config_file',
844	localhost = '$localhost', output_list = '$output_list' /
845
846	%%END%%
847
848	if [[ $localhost_realname = "sx-fep" ]]
849	then
850	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
851	else
852
853	if [[ "$host" != $localhost ]]
854	then
855
856	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
857	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
858	if [[ $? != 0 ]]
859	then
860	printf "\n\n +++ no interpret_config found"
861	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
862	locat=interpret_config; exit
863	fi
864	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
865	$interpret_config_executable
866
867	else
868
869	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
870	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
871	then
872	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
873	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
874	locat=interpret_config; exit
875	else
876	interpret_config${block}.x
877	fi
878
879	fi
880	fi
881	rm .mrun_environment
882
883
884	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
885	chmod u+x $interpreted_config_file
886	export PATH=$PATH:.
887	. $interpreted_config_file
888	rm $interpreted_config_file
889
890	fi
891
892
893	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
894	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
895	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
896	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
897	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
898	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
899	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
900
901
902	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
903	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
904	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
905	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
906	if [[ "$SOURCES_COMPLETE" = "" ]]
907	then
908
909	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
910	# VEREINBART WURDE
911	source_path=""
912	line=""
913	grep "%source_path" $config_file > tmp_mrun
914	while read line
915	do
916	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
917	then
918	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
919	then
920	global_source_path=`echo $line \| cut -d" " -f2`
921	fi
922	fi
923	done < tmp_mrun
924
925	line=""
926	found=false
927	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
928	while read line
929	do
930	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
931	then
932	if [[ $found = true ]]
933	then
934	printf "\n\n +++ more than one source path found in configuration file"
935	printf "\n for local host \"$localhost\" "
936	locat=source_path; exit
937	fi
938	source_path=`echo $line \| cut -d" " -f2`
939	found=true
940	fi
941	done < tmp_mrun
942	rm tmp_mrun
943
944	if [[ "$source_path" = "" ]]
945	then
946	if [[ "$global_source_path" != "" ]]
947	then
948	source_path=$global_source_path
949	else
950	printf "\n\n +++ no source path found in configuration file"
951	printf "\n for local host \"$localhost\" "
952	locat=source_path; exit
953	fi
954	fi
955	eval source_path=$source_path
956
957	if [[ ! -d $source_path ]]
958	then
959	printf "\n\n +++ source path \"$source_path\" on local host"
960	printf "\n \"$localhost\" does not exist"
961	locat=source_path; exit
962	fi
963
964	fi
965
966
967	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
968	# DURCH OPTION -G MITGETEILT)
969	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
970	then
971	global_revision=`svnversion $source_path 2>/dev/null`
972	global_revision="Rev: $global_revision"
973	fi
974
975
976	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
977	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
978	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
979	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
980	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
981	if [[ -n $host && "$host" != $localhost ]]
982	then
983	do_batch=true
984	do_remote=true
985	case $host in
986	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
987	(*) printf "\n"
988	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
989	printf "\n is not available"
990	locat=nqs; (( iec = 0 )); exit;;
991	esac
992	else
993	host=$localhost
994	fi
995
996
997	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
998	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
999	then
1000
1001	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1002	if [[ ! -n $numprocs ]]
1003	then
1004	printf "\n"
1005	printf "\n +++ option \"-K parallel\" requires additional specification"
1006	printf "\n of the number of processors to be used by"
1007	printf "\n mrun-option \"-X\" or by environment-variable"
1008	printf "\n \"numprocs\" in the configuration file"
1009	locat=numprocs; (( iec = 0 )); exit
1010	fi
1011
1012	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1013	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1014	# GESAMTPROZESSORANZAHL IST
1015	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1016	then
1017	printf "\n"
1018	printf "\n +++ option \"-T\" (tasks per node) is missing"
1019	printf "\n set -T option or define tasks_per_node in the config file"
1020	locat=tasks_per_node; (( iec = 0 )); exit
1021	fi
1022	if [[ $host != lcflow && $host != lcxt5m ]]
1023	then
1024	(( ival = $tasks_per_node ))
1025	(( pes = numprocs ))
1026	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1027	# then
1028	# (( pes = pes - 1 ))
1029	# fi
1030	(( ii = pes / ival ))
1031	if (( pes - ii * ival > 0 ))
1032	then
1033	printf "\n"
1034	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1035	printf "\n divisor of the total number of processors (option \"-X\")"
1036	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1037	locat=tasks_per_node; (( iec = 0 )); exit
1038	fi
1039	fi
1040
1041
1042	# IBMY HAT NUR EINEN KNOTEN
1043	if [[ $host = ibmy ]]
1044	then
1045	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1046	then
1047	printf "\n"
1048	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1049	printf "\n total number of processors (option \"-X\")"
1050	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1051	locat=tasks_per_node; (( iec = 0 )); exit
1052	fi
1053	fi
1054
1055
1056	# SETTINGS FOR SUBJOB-COMMAND
1057	TOPT="-T $tasks_per_node"
1058	OOPT="-O $threads_per_task"
1059
1060	# GESAMTZAHL DER KNOTEN BESTIMMEN
1061	if [[ "$tasks_per_node" != "" ]]
1062	then
1063	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1064	fi
1065
1066	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1067	# SETZEN
1068	if [[ $node_usage = default ]]
1069	then
1070	if [[ $host = ibms ]]
1071	then
1072	node_usage=shared
1073	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1074	then
1075	node_usage=singlejob
1076	else
1077	node_usage=not_shared
1078	fi
1079	fi
1080
1081	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1082	then
1083	printf "\n"
1084	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1085	printf "\n \"shared\" or \"not_shared\""
1086	locat=tasks_per_node; (( iec = 0 )); exit
1087	fi
1088
1089	fi
1090
1091	# PRUEFEN, OB HOSTFILE EXISTIERT
1092	if [[ -n $hostfile ]]
1093	then
1094	if [[ ! -f $hostfile ]]
1095	then
1096	printf "\n"
1097	printf "\n +++ hostfile \"$hostfile\" does not exist"
1098	locat=hostfile; exit
1099	fi
1100	fi
1101
1102	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1103	if [[ $host = ibmy && $do_remote = false ]]
1104	then
1105	if [[ ! -f $HOME/.rhosts ]]
1106	then
1107	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1108	printf "\n\n *** file:"
1109	printf "\n $HOME/.rhosts"
1110	printf "\n was created\n"
1111	fi
1112	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1113	then
1114	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1115	printf "\n\n *** file:"
1116	printf "\n $HOME/.rhosts"
1117	printf "\n was extended by the name of the current host\n"
1118	fi
1119	fi
1120
1121
1122	# Set default value for the maximum number of parallel io streams
1123	if [[ "$maximum_parallel_io_streams" = "" ]]
1124	then
1125	maximum_parallel_io_streams=$numprocs
1126	fi
1127
1128
1129	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1130	if [[ "$scp_port" != "" ]]
1131	then
1132	PORTOPT="-P $scp_port"
1133	SSH_PORTOPT="-p $scp_port"
1134	fi
1135
1136
1137	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1138	if [[ $queue = none ]]
1139	then
1140	case $host in
1141	(ibmh) queue=no_class;;
1142	(ibmkisti) queue=class.32plus;;
1143	(ibmy) queue=parallel;;
1144	(lckiaps) queue=normal;;
1145	(lckyoto) queue=ph;;
1146	(lckyuh) queue=fx-single;;
1147	(lckyut) queue=cx-single;;
1148	(lcsgib) queue=testq;;
1149	(lcsgih) queue=testq;;
1150	(lctit) queue=S;;
1151	(nech) queue=none;;
1152	(necriam) queue=SP;;
1153	(unics) queue=unics;;
1154	esac
1155	fi
1156
1157
1158	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1159	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1160	# ERMITTELN
1161	(( i = 0 ))
1162	while (( i < iin ))
1163	do
1164	(( i = i + 1 ))
1165	(( maxcycle = 0 ))
1166
1167	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1168	if [[ "${actionin[$i]}" = di ]]
1169	then
1170	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1171	# REM-MASCHINE AUSWERTEN
1172	eval filename=${pathin[$i]}/${endin[$i]}
1173	else
1174	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1175	# REM-MASCHINE AUSWERTEN
1176	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1177	fi
1178	eval pathname=${pathin[$i]}
1179
1180	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1181	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1182	then
1183	filename_input=$filename
1184	fi
1185
1186	# PRUEFEN AUF VORHANDENSEIN
1187	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1188	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1189	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1190	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1191	then
1192	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1193	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1194	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1195	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1196	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1197	if [[ "${transin[$i]}" != "locopt" ]]
1198	then
1199	printf "\n\n +++ INPUT-file: "
1200	if [[ "${extin[$i]}" = "" ]]
1201	then
1202	printf "\n $filename"
1203	else
1204	printf "\n $filename.${extin[$i]}"
1205	fi
1206	printf "\n does not exist\n"
1207	locat=input; exit
1208	else
1209	transin[$i]="unavailable"
1210	fi
1211	else
1212
1213	# ZYKLUSNUMMER FESTSTELLEN
1214	ls -1 -d $filename > filelist 2>/dev/null
1215	ls -1 -d $filename.* >> filelist 2>/dev/null
1216	while read zeile
1217	do
1218	cycle=$(echo $zeile \| cut -f2 -d".")
1219	if [[ "$cycle" = "$zeile" ]]
1220	then
1221	(( icycle = 0 ))
1222	elif [[ "$cycle" = "${extin[$i]}" ]]
1223	then
1224	(( icycle = 0 ))
1225	else
1226	(( icycle = $cycle ))
1227	fi
1228	if (( icycle > maxcycle ))
1229	then
1230	(( maxcycle = icycle ))
1231	file_to_be_used=$zeile
1232	fi
1233	done <filelist
1234	rm filelist
1235
1236	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1237	if (( maxcycle > 0 ))
1238	then
1239	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1240	then
1241	filename=${filename}.$maxcycle.${extin[$i]}
1242	else
1243	filename=${filename}.$maxcycle
1244	fi
1245	else
1246	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1247	then
1248	filename=${filename}.${extin[$i]}
1249	fi
1250	fi
1251
1252	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1253	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1254	absnamein[$i]=$filename
1255	if (( maxcycle > 0 ))
1256	then
1257	if [[ "${actionin[$i]}" = di ]]
1258	then
1259	frelin[$i]=${endin[$i]}.$maxcycle
1260	else
1261	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1262	fi
1263	else
1264	if [[ "${actionin[$i]}" = di ]]
1265	then
1266	frelin[$i]=${endin[$i]}
1267	else
1268	frelin[$i]=${afname}${endin[$i]}
1269	fi
1270	fi
1271
1272	fi
1273	done
1274
1275	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1276	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1277	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1278	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1279	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1280	(( i = 0 ))
1281	while (( i < iout ))
1282	do
1283	(( i = i + 1 ))
1284	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1285	then
1286	if [[ "${actionout[$i]}" = tr ]]
1287	then
1288	actionout[$i]=""
1289	elif [[ "${actionout[$i]}" = trpe ]]
1290	then
1291	actionout[$i]=pe
1292	elif [[ "${actionout[$i]}" = tra ]]
1293	then
1294	actionout[$i]=a
1295	fi
1296	(( maxcycle = 0 ))
1297	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1298	eval catalogname=${pathout[$i]}
1299	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1300	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1301	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1302	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1303	then
1304
1305	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1306	if cat /dev/null > $filename
1307	then
1308	rm $filename
1309	else
1310
1311	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1312	if [[ ! -d $catalogname ]]
1313	then
1314	if mkdir -p $catalogname
1315	then
1316	printf "\n\n *** directory:"
1317	printf "\n $catalogname"
1318	printf "\n was created\n"
1319	else
1320	printf "\n\n +++ OUTPUT-file:"
1321	printf "\n $filename"
1322	printf "\n cannot be created, because directory does not exist"
1323	printf "\n and cannot be created either"
1324	printf "\n"
1325	locat=output ; exit
1326	fi 2>/dev/null
1327	else
1328	printf "\n\n +++ OUTPUT-file:"
1329	printf "\n $filename"
1330	printf "\n cannot be created, although directory exists"
1331	printf "\n"
1332	locat=output ; exit
1333	fi
1334	fi 2>/dev/null
1335	else
1336
1337	# ZYKLUSNUMMER FESTSTELLEN
1338	ls -1 -d $filename > filelist 2>/dev/null
1339	ls -1 -d $filename.* >> filelist 2>/dev/null
1340	while read zeile
1341	do
1342	cycle=$(echo $zeile \| cut -f2 -d".")
1343	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1344	then
1345	(( icycle = 1 ))
1346	else
1347	(( icycle = $cycle + 1 ))
1348	fi
1349	if (( icycle > maxcycle ))
1350	then
1351	(( maxcycle = icycle ))
1352	fi
1353	done <filelist
1354	rm filelist
1355	fi
1356
1357	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1358	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1359	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1360	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1361	if [[ "${actionout[$i]}" != a ]]
1362	then
1363	if (( maxcycle > 0 ))
1364	then
1365	filename=${filename}.$maxcycle
1366	if cat /dev/null > $filename
1367	then
1368	rm $filename
1369	else
1370	printf "\n +++ OUTPUT-file:"
1371	printf "\n $filename"
1372	printf "\n cannot be created"
1373	locat=output ; exit
1374	fi
1375	fi
1376	else
1377	(( maxcycle = maxcycle - 1 ))
1378	if (( maxcycle > 0 ))
1379	then
1380	filename=${filename}.$maxcycle
1381	fi
1382	fi
1383
1384	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1385	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1386	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1387	pathout[$i]=$filename
1388	if (( maxcycle > 0 ))
1389	then
1390	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1391	else
1392	frelout[$i]=${fname}${endout[$i]}
1393	fi
1394
1395	fi
1396	done
1397
1398
1399	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1400	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1401	then
1402	if [[ "$dvr_inc" = "" ]]
1403	then
1404	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1405	printf "\n This is required for the dvrp_graphics package.\n"
1406	locat=dvr; exit
1407	fi
1408	if [[ "$dvr_lib" = "" ]]
1409	then
1410	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1411	printf "\n This is required for the dvrp_graphics package.\n"
1412	locat=dvr; exit
1413	fi
1414	fi
1415
1416
1417	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1418	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1419	# UEBERSETZT ZU WERDEN)
1420	if [[ "$mainprog" = "" && "$executable" = "" ]]
1421	then
1422	printf "\n +++ neither main program nor executable defined"
1423	locat=source; exit
1424	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1425	then
1426	printf "\n +++ main program as well as executable defined"
1427	locat=source; exit
1428	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1429	then
1430	do_compile=false
1431	fi
1432
1433
1434	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1435	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1436	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1437	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1438	then
1439	rm -rf SOURCES_FOR_RUN_$fname
1440	mkdir SOURCES_FOR_RUN_$fname
1441	fi
1442
1443
1444	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1445	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1446	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1447	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1448	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1449	then
1450
1451	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1452
1453	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1454	then
1455
1456	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1457	source_list=""
1458	cd $source_path
1459
1460
1461	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1462	if [[ ! -d .svn ]]
1463	then
1464	printf "\n\n +++ source directory"
1465	printf "\n \"$source_path\" "
1466	printf "\n is not under control of \"subversion\"."
1467	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1468	fi
1469
1470
1471	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1472	Filenames=""
1473	svn status > tmp_mrun
1474	while read line
1475	do
1476	firstc=`echo $line \| cut -c1`
1477	if [[ $firstc = M \|\| $firstc = "?" ]]
1478	then
1479	Name=`echo "$line" \| cut -c8-`
1480	extension=`echo $Name \| cut -d. -f2`
1481	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1482	then
1483	Filenames="$Filenames "$Name
1484	fi
1485	fi
1486	done < tmp_mrun
1487
1488
1489	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1490	for dateiname in $Filenames
1491	do
1492	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1493	source_list=$source_list"$dateiname "
1494	done
1495
1496	cd - > /dev/null
1497
1498
1499	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1500	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1501	# VORHANDEN
1502	elif [[ "$source_list" != "" && $restart_run != true ]]
1503	then
1504
1505	cd $source_path
1506
1507	for filename in $source_list
1508	do
1509
1510	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1511	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1512	then
1513	printf "\n +++ source code file: $filename"
1514	printf "\n must not contain (\"/\") "
1515	locat=source; exit
1516	fi
1517
1518	if [[ ! -f $filename ]]
1519	then
1520	printf "\n +++ source code file: $filename"
1521	printf "\n does not exist"
1522	locat=source; exit
1523	else
1524	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1525	fi
1526
1527	done
1528
1529	cd - > /dev/null
1530
1531	fi
1532
1533
1534	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1535	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1536	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1537	if [[ $restart_run != true ]]
1538	then
1539
1540	if [[ ! -f "$source_path/$mainprog" ]]
1541	then
1542	printf "\n\n +++ main program: $mainprog"
1543	printf "\n does not exist in source directory"
1544	printf "\n \"$source_path\"\n"
1545	locat=source; exit
1546	else
1547	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1548	then
1549	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1550	source_list=${mainprog}" $source_list"
1551	fi
1552	fi
1553	fi
1554
1555
1556	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1557	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1558	if [[ "$restart_run" != true ]]
1559	then
1560	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1561	if [[ ! -f $makefile ]]
1562	then
1563	printf "\n +++ file \"$makefile\" does not exist"
1564	locat=make; exit
1565	else
1566	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1567	fi
1568	fi
1569
1570
1571	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1572	if [[ $restart_run != true && "$add_source_path" != "" ]]
1573	then
1574
1575	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1576	if [[ ! -d $add_source_path ]]
1577	then
1578	printf "\n\n +++ WARNING: additional source code directory"
1579	printf "\n \"$add_source_path\" "
1580	printf "\n does not exist or is not a directory."
1581	printf "\n No source code will be used from this directory!\n"
1582	add_source_path=""
1583	if [[ $silent == false ]]
1584	then
1585	sleep 3
1586	fi
1587	else
1588
1589	cd $add_source_path
1590	found=false
1591
1592	Names=$(ls -1 *.f90 2>&1)
1593	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1594	Names=$(ls -1 *.F90 2>&1)
1595	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1596	Names=$(ls -1 *.F 2>&1)
1597	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1598	Names=$(ls -1 *.f 2>&1)
1599	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1600	Names=$(ls -1 *.c 2>&1)
1601	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1602
1603	cd - > /dev/null
1604	cd SOURCES_FOR_RUN_$fname
1605
1606	# COPY MAKEFILE IF EXISTING
1607	if [[ -f $add_source_path/Makefile ]]
1608	then
1609	printf "\n\n *** user Makefile from directory"
1610	printf "\n \"$add_source_path\" is used \n"
1611	if [[ $silent == false ]]
1612	then
1613	sleep 1
1614	fi
1615	cp $add_source_path/Makefile .
1616	fi
1617
1618	for dateiname in $AddFilenames
1619	do
1620	if [[ -f $dateiname ]]
1621	then
1622	printf "\n +++ source code file \"$dateiname\" found in additional"
1623	printf "\n source code directory \"$add_source_path\" "
1624	printf "\n but was also given with option \"-s\" which means that it should be taken"
1625	printf "\n from directory \"$source_path\"."
1626	locat=source; exit
1627	fi
1628
1629	cp $add_source_path/$dateiname .
1630	source_list="$source_list $dateiname"
1631
1632	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1633	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1634	then
1635	printf "\n\n +++ user file \"$dateiname\" "
1636	printf "\n is not listed in Makefile \n"
1637	locat=source; exit
1638	else
1639
1640	# Default User-Interface von der Liste entfernen, falls Datei
1641	# ein User-Interface enthaelt
1642	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1643	# then
1644	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1645	# then
1646	# rm -rf user_interface.f90
1647	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1648	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1649	# printf "\n since a user-interface is found in file"
1650	# printf "\n \"$add_source_path/$dateiname\" \n"
1651	# sleep 3
1652	# else
1653	if [[ $found = false ]]
1654	then
1655	found=true
1656	printf "\n\n *** following user file(s) added to the"
1657	printf " files to be translated:\n "
1658	fi
1659	printf "$dateiname "
1660	if [[ $silent == false ]]
1661	then
1662	sleep 0.5
1663	fi
1664
1665	fi
1666	done
1667	[[ $found = true ]] && printf "\n"
1668	cd - > /dev/null
1669	fi
1670	fi
1671
1672
1673	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1674	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1675	if [[ $restart_run != true && -n $package_list ]]
1676	then
1677
1678	cd $source_path
1679
1680	for package in $package_list
1681	do
1682
1683	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1684
1685	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1686	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1687	# LIEFERT
1688	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1689
1690
1691	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1692	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1693	for source_list_name in $package_source_list
1694	do
1695	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1696	then
1697
1698	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1699	ending=`echo $source_list_name \| cut -f2 -d.`
1700	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1701	then
1702	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1703	source_list="$source_list $source_list_name"
1704	fi
1705	fi
1706	done
1707	done
1708
1709	cd - > /dev/null
1710	fi
1711
1712
1713	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1714	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1715	# if [[ "$restart_run" != true ]]
1716	# then
1717	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1718	# if [[ ! -f $makefile ]]
1719	# then
1720	# printf "\n +++ file \"$makefile\" does not exist"
1721	# locat=make; exit
1722	# else
1723	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1724	# fi
1725	# fi
1726
1727	fi # do_compile=true
1728
1729
1730	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1731	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1732	if [[ $do_compile = true ]]
1733	then
1734
1735	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1736	# ZUSAMMENSETZEN
1737	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1738	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1739	then
1740	cpp_options="${cpp_options},-D__ibm=__ibm"
1741	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1742	then
1743	cpp_options="$cpp_options -D__nec"
1744	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1745	then
1746	cpp_options="$cpp_options -D__lc"
1747	else
1748	cpp_options="$cpp_options -D__$localhost"
1749	fi
1750
1751	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1752	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1753	then
1754	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1755	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1756	else
1757	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1758	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1759	fi
1760
1761	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1762	if [[ -n $package_list ]]
1763	then
1764	for package in $package_list
1765	do
1766	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1767	then
1768	if [[ $package != "dvrp_graphics+1PE" ]]
1769	then
1770	cpp_options="${cpp_options},-D__$package=__$package"
1771	else
1772	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1773	export use_seperate_pe_for_dvrp_output=true
1774	fi
1775	else
1776	if [[ $package != "dvrp_graphics+1PE" ]]
1777	then
1778	cpp_options="$cpp_options -D__$package"
1779	else
1780	cpp_options="$cpp_options -D__dvrp_graphics"
1781	export use_seperate_pe_for_dvrp_output=true
1782	fi
1783	fi
1784	done
1785	fi
1786
1787	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1788	if [[ -n $cpp_opts ]]
1789	then
1790	for popts in $cpp_opts
1791	do
1792	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1793	then
1794	cpp_options="${cpp_options},-D__$popts=__$popts"
1795	else
1796	cpp_options="$cpp_options -D__$popts"
1797	fi
1798	done
1799	fi
1800
1801	else
1802
1803
1804	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1805	if [[ $do_remote = false ]]
1806	then
1807	if [[ ! -f $executable ]]
1808	then
1809	printf "\n +++ executable file: $executable"
1810	printf "\n does not exist"
1811	locat=executable; exit
1812	fi
1813	fi
1814	fi
1815
1816
1817	# JOBMODUS FESTSTELLEN
1818	if [[ "$ENVIRONMENT" = BATCH ]]
1819	then
1820	jobmo=BATCH
1821	else
1822	jobmo=INTERACTIVE
1823	fi
1824
1825
1826	# no interactive runs on lctit
1827	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1828	then
1829	printf "\n +++ no interactive runs allowed on host \"$host\" "
1830	printf "\n please submit batch job using mrun option \"-b\" \n"
1831	locat=normal; exit
1832	fi
1833
1834
1835	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1836	# DURCH BENUTZER ANDERWEITIG VEREINBART
1837	if [[ "$compiler_name" = "" ]]
1838	then
1839
1840	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1841	locat=compiler_name; exit
1842
1843	fi
1844
1845
1846	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1847	[[ $localhost = necriam ]] && compiler_name=mpif90
1848
1849
1850
1851	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1852	kennung=$RANDOM
1853	if [[ "$tmp_user_catalog" = "" ]]
1854	then
1855	if [[ $localhost = ibmh ]]
1856	then
1857	tmp_user_catalog=$SCRATCH
1858	elif [[ $localhost = nech ]]
1859	then
1860	tmp_user_catalog=$WRKSHR
1861	else
1862	tmp_user_catalog=/tmp
1863	fi
1864	fi
1865	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1866
1867
1868	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1869	# BESTIMMEN
1870	if [[ "$tmp_data_catalog" = "" ]]
1871	then
1872	if [[ $localhost = nech ]]
1873	then
1874	tmp_data_catalog=$WRKSHR/mrun_restart_data
1875	else
1876	tmp_data_catalog=/tmp/mrun_restart_data
1877	fi
1878	fi
1879
1880
1881	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1882	# ERSETZEN
1883	if [[ $do_remote = false && $do_compile = true ]]
1884	then
1885	eval fopts=\"$fopts\"
1886	eval lopts=\"$lopts\"
1887	fi
1888
1889
1890
1891	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1892	fopts="$fopts $netcdf_inc $dvr_inc"
1893	lopts="$lopts $netcdf_lib $dvr_lib"
1894	ROPTS="$ropts"
1895	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1896	# then
1897	XOPT="-X $numprocs"
1898	# fi
1899
1900
1901
1902	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1903	# GRAMM BENOETIGT
1904	done=false
1905	while [[ $done = false ]]
1906	do
1907	cputime=$cpumax
1908	if (( $cputime == 0 ))
1909	then
1910	if [[ $do_batch = true ]]
1911	then
1912	printf "\n +++ cpu-time is undefined"
1913	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1914	printf "\n >>> "
1915	read cputime 1>/dev/null 2>&1
1916	else
1917	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1918	fi
1919	else
1920	done=true
1921	fi
1922	cpumax=$cputime
1923	done
1924
1925	(( minuten = cputime / 60 ))
1926	(( sekunden = cputime - minuten * 60 ))
1927
1928
1929	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1930	if [[ $do_batch = true ]]
1931	then
1932	done=false
1933	while [[ $done = false ]]
1934	do
1935	if (( memory == 0 ))
1936	then
1937	printf "\n +++ memory demand is undefined"
1938	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1939	printf "\n >>> "
1940	read memory 1>/dev/null 2>&1
1941	else
1942	done=true
1943	fi
1944	done
1945	fi
1946
1947
1948	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1949	if [[ $do_remote = true && -z $remote_username ]]
1950	then
1951	while [[ -z $remote_username ]]
1952	do
1953	printf "\n +++ username on remote host \"$host\" is undefined"
1954	printf "\n >>> Please type username:"
1955	printf "\n >>> "
1956	read remote_username
1957	done
1958	mc="$mc -u$remote_username"
1959	fi
1960
1961	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1962	if [[ "$login_init_cmd" != "" ]]
1963	then
1964	export init_cmds="${login_init_cmd};"
1965	fi
1966
1967
1968	# set module load command and export for subjob
1969	if [[ "$modules" != "" ]]
1970	then
1971	if [[ $host = lctit ]]
1972	then
1973	export module_calls=". $modules"
1974	else
1975	export module_calls="module load ${modules};"
1976	fi
1977	fi
1978
1979	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1980	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1981	then
1982	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1983	then
1984	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1985	fi
1986	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1987	# then
1988	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1989	# echo "*** module_calls = $module_calls"
1990	# fi
1991	fi
1992
1993
1994	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1995	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1996	then
1997	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1998	then
1999	mpilib=mpt
2000	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2001	then
2002	mpilib=mvapich
2003	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2004	then
2005	mpilib=impi
2006	fi
2007	fi
2008
2009
2010
2011	###########################################################################
2012	# HEADER-AUSGABE
2013	###########################################################################
2014
2015
2016	calltime=$(date)
2017	printf "\n"
2018	# [[ $silent = false ]] && clear
2019	printf "#------------------------------------------------------------------------# \n"
2020	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2021	printf "\| \| \n"
2022	spalte1="called on:"; spalte2=$localhost_realname
2023	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2024	if [[ $local_compile = false ]]
2025	then
2026	if [[ $do_remote = true ]]
2027	then
2028	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2029	else
2030	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2031	fi
2032	else
2033	spalte1="compiling test only!"; spalte2=""
2034	fi
2035	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2036	if [[ -n $numprocs ]]
2037	then
2038	if [[ $run_coupled_model = false ]]
2039	then
2040	spalte1="number of PEs:"; spalte2=$numprocs
2041	else
2042	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2043	fi
2044	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2045	fi
2046	if [[ -n $tasks_per_node ]]
2047	then
2048	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2049	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2050	fi
2051	if [[ $maximum_parallel_io_streams != $numprocs ]]
2052	then
2053	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2054	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2055	fi
2056	if [[ $use_openmp = true ]]
2057	then
2058	spalte1="threads per task:"; spalte2="$threads_per_task"
2059	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2060	fi
2061	printf "\| \| \n"
2062	if [[ $do_compile = true ]]
2063	then
2064	if [[ "$mopts" != "" ]]
2065	then
2066	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2068	zeile=$(echo "$mopts" \| cut -c46-)
2069	while [[ "$zeile" != "" ]]
2070	do
2071	spalte1=""
2072	spalte2=$(echo "$zeile" \| cut -c-45)
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	zeile=$(echo "$zeile" \| cut -c46-)
2075	done
2076	fi
2077
2078	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2079	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2080	zeile=$(echo "$cpp_options" \| cut -c46-)
2081	while [[ "$zeile" != "" ]]
2082	do
2083	spalte1=""
2084	spalte2=$(echo "$zeile" \| cut -c-45)
2085	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2086	zeile=$(echo "$zeile" \| cut -c46-)
2087	done
2088
2089	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	zeile=$(echo "$fopts" \| cut -c46-)
2092	while [[ "$zeile" != "" ]]
2093	do
2094	spalte1=""
2095	spalte2=$(echo "$zeile" \| cut -c-45)
2096	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2097	zeile=$(echo "$zeile" \| cut -c46-)
2098	done
2099
2100	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2101	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2102	zeile=$(echo "$lopts" \| cut -c46-)
2103	while [[ "$zeile" != "" ]]
2104	do
2105	spalte1=""
2106	spalte2=$(echo "$zeile" \| cut -c-45)
2107	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2108	zeile=$(echo "$zeile" \| cut -c46-)
2109	done
2110
2111	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2113	zeile=$(echo "$modules" \| cut -c46-)
2114	while [[ "$zeile" != "" ]]
2115	do
2116	spalte1=""
2117	spalte2=$(echo "$zeile" \| cut -c-45)
2118	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2119	zeile=$(echo "$zeile" \| cut -c46-)
2120	done
2121
2122	spalte1="main program:"; spalte2=$mainprog
2123	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2124	else
2125	spalte1=executable:; spalte2=$executable
2126	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2127	fi
2128	printf "\| \| \n"
2129	spalte1="base name of files:"; spalte2=$fname
2130	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2131	if [[ $fname != $afname ]]
2132	then
2133	spalte1="base name of input files:"; spalte2=$afname
2134	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2135	fi
2136	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2137	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2138	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2140
2141	if [[ "$ocean_file_appendix" = true ]]
2142	then
2143	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2144	fi
2145
2146	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2147	then
2148	spalte1="memory demand / PE":; spalte2="$memory MB"
2149	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2150	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2151	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2152	fi
2153
2154	if [[ $do_compile = true ]]
2155	then
2156	printf "\| \| \n"
2157	printf "\| Files to be compiled: \| \n"
2158	zeile=$source_list
2159	while [[ "$zeile" != "" ]]
2160	do
2161	linestart=$(echo $zeile \| cut -c-70)
2162	printf "\| %-70s \| \n" "$linestart"
2163	zeile=$(echo "$zeile" \| cut -c71-)
2164	done
2165	fi
2166	printf "#------------------------------------------------------------------------#"
2167
2168
2169
2170	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2171	if [[ $do_trace = true ]]
2172	then
2173	(( i = 0 ))
2174	while (( i < iin ))
2175	do
2176	(( i = i + 1 ))
2177	if (( i == 1 ))
2178	then
2179	printf "\n\n >>> INPUT-file assignments:\n"
2180	fi
2181	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2182	done
2183	(( i = 0 ))
2184	while (( i < iout ))
2185	do
2186	(( i = i + 1 ))
2187	if (( i == 1 ))
2188	then
2189	printf "\n\n >>> OUTPUT-file assignments:\n"
2190	fi
2191	printf "\n ${localout[$i]} : ${pathout[$i]}"
2192	done
2193	(( i = 0 ))
2194	while (( i < iic ))
2195	do
2196	(( i = i + 1 ))
2197	if (( i == 1 ))
2198	then
2199	printf "\n\n >>> INPUT-commands:\n"
2200	fi
2201	printf "\n ${in_command[$i]}"
2202	done
2203	(( i = 0 ))
2204	while (( i < ioc ))
2205	do
2206	(( i = i + 1 ))
2207	if (( i == 1 ))
2208	then
2209	printf "\n\n >>> OUTPUT-commands:\n"
2210	fi
2211	printf "\n ${out_command[$i]}"
2212	done
2213	fi
2214
2215
2216	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2217	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2218	then
2219	antwort=dummy
2220	printf "\n\n"
2221	printf " >>> everything o.k. (y/n) ? "
2222	while read antwort
2223	do
2224	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2225	then
2226	printf " >>> everything o.k. (y/n) ? "
2227	else
2228	break
2229	fi
2230	done
2231	if [[ $antwort = n \|\| $antwort = N ]]
2232	then
2233	locat=user_abort; (( iec = 0 )); exit
2234	fi
2235	if [[ $do_batch = true ]]
2236	then
2237	printf " >>> batch-job will be created and submitted"
2238	else
2239	if [[ $local_compile = false ]]
2240	then
2241	printf " >>> MRUN will now continue to execute on this machine"
2242	else
2243	printf " >>> a test compilation will now be carried out on this machine"
2244	fi
2245	fi
2246	fi
2247
2248
2249	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2250	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2251	check_depository="${working_directory}/trunk/UTIL"
2252	check_sources="${working_directory}/tmp_check_namelist_files"
2253	skip_check=false
2254
2255	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2256	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2257	then
2258	skip_check=true
2259	reason="run on remote host or parameter file check has not been compiled."
2260	fi
2261	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2262	then
2263	skip_check=true
2264	reason="parameter file check has not been compiled."
2265	fi
2266
2267	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2268	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2269	then
2270	skip_check=true
2271	reason="serial run."
2272	fi
2273
2274	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2275	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2276	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2277	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2278	if [[ $check_namelist_files == false ]]
2279	then
2280	skip_check=true
2281	reason="-z option set."
2282	fi
2283
2284	if [[ $fromhost != $localhost ]]
2285	then
2286	skip_check=true
2287	reason="submitting host is local host."
2288	fi
2289
2290	if [[ $run_coupled_model == true ]]
2291	then
2292	skip_check=true
2293	reason="coupled run."
2294	fi
2295
2296	if [[ $restart_run == true ]]
2297	then
2298	skip_check=true
2299	reason="restart run."
2300	fi
2301
2302	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2303	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2304	last_char=`echo $filename_input \| cut -c $last_char`
2305	if [[ "$last_char" == "f" ]]
2306	then
2307	skip_check=true
2308	reason="restart run."
2309	fi
2310
2311	if [[ $skip_check == false ]]
2312	then
2313	tmp_check=${working_directory}/tmp_check
2314
2315	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2316	# NOT NECESSARILY REQUIRED
2317	line=""
2318	found=false
2319	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2320	while read line1
2321	do
2322	line="$line1"
2323	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2324	then
2325	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2326	found=true
2327	fi
2328	done < $tmp_check
2329
2330	if [[ $found = false ]]
2331	then
2332	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2333	fi
2334
2335	rm -rf ${working_directory}/tmp_check
2336
2337	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2338	for item in $input_list
2339	do
2340	if [[ "$item" == "restart" ]]
2341	then
2342	check_restart=1
2343	else
2344	check_restart=0
2345	fi
2346	done
2347
2348	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2349	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2350	then
2351	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2352	locat=check_namelist; exit
2353	fi
2354
2355	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2356	if [[ $check_restart == 1 ]]
2357	then
2358
2359	filenamef="${filename_input}f"
2360	if [[ ! -f $filenamef ]]
2361	then
2362	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2363	check_restart=0
2364	answer=dummy
2365	printf "\n\n"
2366
2367	if [[ $silent == false ]]
2368	then
2369	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2370	do
2371	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2372	read answer
2373	done
2374	if [[ $answer = a \|\| $answer = A ]]
2375	then
2376	printf "\n +++ Aborting...."
2377	locat=normal; exit
2378	fi
2379	fi
2380	else
2381	check_restart=1
2382	fi
2383	fi
2384
2385	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2386	mkdir $check_sources
2387	cd $check_sources
2388
2389
2390	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2391	if [[ -d $add_source_path ]]
2392	then
2393	printf "\n\n *** copying files from $check_depository"
2394	cp $check_depository/check_namelist_files.tar ./
2395
2396	printf "\n\n *** untar of makefile and source files in $check_sources"
2397	tar -xf check_namelist_files.tar > /dev/null 2>&1
2398
2399	printf "\n\n *** adding user code."
2400	cp $add_source_path/* ./
2401	touch check_namelist_files.f90
2402
2403	# GET COMPILER OPTIONS AND PERFORM MAKE
2404	printf "\n\n *** compiling code if necessary...\n"
2405
2406	# workaround for batch jobs on local machine (lcxe6)
2407	if [[ $do_batch == true && $do_remote == false ]]
2408	then
2409	eval $init_cmds
2410	fi
2411
2412	# GET CHECK OPTIONS
2413	line=""
2414	found=false
2415
2416	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2417
2418	while read line1
2419	do
2420
2421	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2422	then
2423	line="$line1"
2424	fi
2425
2426	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2427	then
2428	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2429	line="$line "
2430	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2431	found=true
2432	fi
2433
2434	done < $tmp_check
2435	copts_check="$copts_check -D__check -D__parallel"
2436
2437	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2438
2439	# GET MAKE OUTPUT
2440	if [[ $? != 0 ]]
2441	then
2442	printf "\n +++ error during make."
2443	answer=dummy
2444	printf "\n\n"
2445	if [[ $silent == false ]]
2446	then
2447	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2448	do
2449	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2450	read answer
2451	done
2452	if [[ $answer = a \|\| $answer = A ]]
2453	then
2454	printf "\n +++ Aborting..."
2455	rm -rf $check_sources
2456	locat=normal; exit
2457	else
2458	skip_check=true
2459	fi
2460	else
2461	skip_check=true
2462	fi
2463	fi
2464	else
2465	cp $PALM_BIN/check_namelist_files.x ./
2466	fi
2467
2468	cp $filename_input ./PARIN
2469	if [[ $check_restart == 1 ]]
2470	then
2471	cp $filenamef ./PARINF
2472	fi
2473
2474	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2475	then
2476	printf "\n *** adding topography data"
2477	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2478
2479	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2480	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2481	# WHICH REQUIRE SUFFICIENT MEMORY
2482	ulimit -s unlimited
2483	fi
2484
2485	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2486	cat > ENVPAR << %%END%%
2487	&envpar run_identifier = '$fname', host = '$host',
2488	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2489	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2490	maximum_cpu_time_allowed = ${cpumax}.,
2491	revision = '$global_revision',
2492	local_dvrserver_running = $local_dvrserver_running /
2493
2494	%%END%%
2495
2496	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2497	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2498	then
2499	printf "\n +++ WARNING: check_namelist_files.x not found."
2500	answer=dummy
2501	printf "\n\n"
2502
2503	if [[ $silent == false ]]
2504	then
2505	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2506	do
2507	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2508	read answer
2509	done
2510	if [[ $answer = a \|\| $answer = A ]]
2511	then
2512	printf "\n +++ Aborting..."
2513	rm -rf $check_sources
2514	locat=normal; exit
2515	else
2516	printf "\n *** skipping parameter file check."
2517	fi
2518	fi
2519
2520	elif [[ $skip_check == false ]]
2521	then
2522	# STARTING THE PARAMETER FILE CHECK
2523	printf "\n\n *** starting parameter file check..."
2524
2525	# CHECKING THE P3D FILE
2526	printf "\n\n (1) checking $filename_input"
2527	echo "$numprocs 0 0" > VARIN
2528	errors=`./check_namelist_files.x < VARIN 2>&1`
2529
2530	check_error=false
2531	if [[ "$errors" == "" ]]
2532	then
2533	printf " --> o.k."
2534	else
2535	printf " --> failed."
2536	check_error=true
2537	printf "\n\n $errors"
2538	fi
2539
2540	# CHECKING THE PD3F FILE IF NECESSARY
2541	if [[ $check_restart == 1 && $check_error == false ]]
2542	then
2543	printf "\n\n (2) checking $filenamef"
2544
2545	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2546	# IN &INIPAR LIST
2547	found=false
2548	cat PARINF \| while read line
2549	do
2550	line=$(echo $line\|sed 's/ //g')
2551	if [[ $line == "&inipar" ]]
2552	then
2553	start_search=true
2554	fi
2555
2556	if [[ $start_search == true ]]
2557	then
2558	if [[ $line == "initializing_actions='read_restart_data'" ]]
2559	then
2560	found=true
2561	break
2562	fi
2563	fi
2564
2565	if [[ $line == "/" ]]
2566	then
2567	start_search=false
2568	fi
2569
2570	done
2571
2572	if [[ $found = false ]]
2573	then
2574	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2575	printf "\n in &inipar list in $fname$p3df_suffix."
2576	rm -rf $check_sources
2577	locat=check_namelist; exit
2578	fi
2579
2580	# READ max_user_pr FROM FILES
2581	if [[ -f parin_for_check ]]
2582	then
2583	read max_pr_user < parin_for_check
2584	else
2585	max_user_pr=0
2586	fi
2587
2588	echo "$numprocs 1 $max_pr_user" > VARIN
2589	errors=`./check_namelist_files.x < VARIN 2>&1`
2590
2591	if [[ "$errors" == "" ]]
2592	then
2593	printf " --> o.k."
2594	else
2595	printf " --> failed."
2596	check_error=true
2597	printf "\n\n $errors"
2598	fi
2599	fi
2600
2601	# REPORT ERRORS AND CONTINUE/EXIT
2602	if [[ $check_error == true ]]
2603	then
2604	printf "\n +++ errors found in the parameter file!\n"
2605	answer=dummy
2606	printf "\n\n"
2607
2608	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2609	do
2610	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2611	read answer
2612	done
2613
2614	if [[ $answer = a \|\| $answer = A ]]
2615	then
2616	printf "\n +++ Aborting..."
2617	rm -rf $check_sources
2618	locat=normal; exit
2619	fi
2620	else
2621	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2622	fi
2623	rm -rf $check_sources
2624	fi
2625	else
2626	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2627	fi
2628
2629	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2630	rm -rf $check_sources
2631	cd $working_directory
2632
2633
2634	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2635	# CHENDE AKTIONEN DURCHGEFUEHRT
2636	if [[ $do_batch = false ]]
2637	then
2638
2639
2640	# TEMPORAEREN KATALOG ERZEUGEN
2641	mkdir -p $TEMPDIR
2642	chmod go+rx $TEMPDIR
2643	tmpcreate=true
2644
2645	# set striping on lustre file system
2646	# if [[ $localhost = lcsgih ]]
2647	# then
2648	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2649	# lfs getstripe $TEMPDIR
2650	# fi
2651
2652
2653	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2654	# TEMPORAERES VERZEICHNIS KOPIEREN
2655	if [[ $do_compile = true ]]
2656	then
2657
2658	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2659	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2660	if [[ $localhost = nech ]]
2661	then
2662	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2663	if mkdir -p $TEMPDIR_COMPILE
2664	then
2665	printf "\n *** \"$TEMPDIR_COMPILE\" "
2666	printf "\n is generated as temporary directory for cross compiling\n"
2667	else
2668	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2669	printf "\n needed for cross compilation failed"
2670	locat=compile
2671	exit
2672	fi
2673	else
2674	TEMPDIR_COMPILE=$TEMPDIR
2675	fi
2676
2677
2678	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2679	line=""
2680	grep "%depository_path" $config_file > tmp_mrun
2681	while read line
2682	do
2683	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2684	then
2685	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2686	then
2687	global_depository_path=`echo $line \| cut -d" " -s -f2`
2688	fi
2689	fi
2690	done < tmp_mrun
2691
2692	line=""
2693	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2694	while read line
2695	do
2696	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2697	then
2698	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2699	then
2700	local_depository_path=`echo $line \| cut -d" " -s -f2`
2701	fi
2702	fi
2703	done < tmp_mrun
2704
2705	if [[ "$local_depository_path" = "" ]]
2706	then
2707	if [[ "$global_depository_path" != "" ]]
2708	then
2709	local_depository_path=$global_depository_path
2710	else
2711	printf "\n\n +++ no depository path found in configuration file"
2712	printf "\n for local host \"$localhost\" "
2713	printf "\n please set \"\%depository_path\" in configuration file\n"
2714	locat=config_file; exit
2715	fi
2716	fi
2717	eval local_depository_path=$local_depository_path
2718	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2719	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2720
2721
2722	basename=`echo $mainprog \| cut -f1 -d"."`
2723	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2724	if [[ ! -f $make_depository ]]
2725	then
2726	printf "\n"
2727	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2728	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2729	else
2730	cp $make_depository $TEMPDIR_COMPILE
2731	cd $TEMPDIR_COMPILE
2732	tar -xf $make_depository > /dev/null 2>&1
2733	cd - > /dev/null
2734	fi
2735
2736	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2737
2738	else
2739
2740	cp $executable ${TEMPDIR}/a.out
2741
2742	fi
2743
2744
2745	# WECHSEL IN TEMPORAEREN KATALOG
2746	cd $TEMPDIR
2747	printf "\n *** changed to temporary directory: $TEMPDIR"
2748
2749
2750	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2751	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2752	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2753	# ERMITTELN
2754	(( i = 0 ))
2755	while (( i < iout ))
2756	do
2757	(( i = i + 1 ))
2758	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2759	then
2760	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2761	else
2762	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2763	fi
2764	done
2765
2766
2767	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2768	if [[ $do_compile = true ]]
2769	then
2770
2771
2772	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2773	printf "\n\n\n *** compilation starts \n$striche\n"
2774	printf " *** compilation with make using following options:\n"
2775	printf " make depository: $make_depository"
2776	if [[ "$mopts" != "" ]]
2777	then
2778	printf " make options: $mopts\n"
2779	fi
2780	printf " compilername: $compiler_name\n"
2781	printf " compiler options: $fopts\n"
2782	printf " preprocessor directives: $cpp_options \n"
2783	printf " linker options: $lopts \n"
2784	if [[ "$modules" != "" ]]
2785	then
2786	printf " modules to be load: $modules \n"
2787	fi
2788	printf " source code files: $source_list \n"
2789
2790	if [[ $localhost = nech ]]
2791	then
2792	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2793	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2794	cp $TEMPDIR_COMPILE/a.out .
2795	[[ $? != 0 ]] && compile_error=true
2796	rm -rf $TEMPDIR_COMPILE
2797	elif [[ $localhost = ibmh ]]
2798	then
2799	printf " compiler is called via ssh on \"plogin1\" \n"
2800	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2801	[[ ! -f a.out ]] && compile_error=true
2802	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2803	elif [[ $localhost = lcsgib ]]
2804	then
2805	printf " compiler is called via ssh on \"bicegate0\" \n"
2806	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2807	[[ ! -f a.out ]] && compile_error=true
2808	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2809	elif [[ $localhost = lcsgih ]]
2810	then
2811	printf " compiler is called via ssh on \"hicegate0\" \n"
2812	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2813	[[ ! -f a.out ]] && compile_error=true
2814	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2815	elif [[ $localhost = lcflow ]]
2816	then
2817	printf " compiler is called via ssh on \"flow\" \n"
2818	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2819	[[ ! -f a.out ]] && compile_error=true
2820	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2821	else
2822	[[ "$init_cmds" != "" ]] && eval $init_cmds
2823	[[ "$module_calls" != "" ]] && eval $module_calls
2824	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2825
2826	fi
2827
2828	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2829	then
2830	printf "\n +++ error occured while compiling or linking"
2831	locat=compile
2832
2833	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2834	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2835	# then
2836	exit
2837	# else
2838	# locat=normal
2839	# fi
2840	else
2841	printf "$striche\n *** compilation finished \n"
2842	fi
2843	fi
2844
2845
2846	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2847	if [[ $local_compile = true ]]
2848	then
2849	cd $HOME
2850	rm -rf $TEMPDIR
2851	locat=local_compile; exit
2852	fi
2853
2854
2855	# BEREITSTELLEN DER INPUT-DATEIEN
2856	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2857	(( i = 0 ))
2858	while (( i < iin ))
2859	do
2860	(( i = i + 1 ))
2861	if (( i == 1 ))
2862	then
2863	printf "\n\n *** providing INPUT-files:\n$striche"
2864	fi
2865
2866
2867	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2868	if [[ "${transin[$i]}" = unavailable ]]
2869	then
2870	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2871	then
2872	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2873	printf "\n is not available!"
2874	else
2875	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2876	printf "\n is not available!"
2877	fi
2878	continue
2879	fi
2880
2881	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2882	files_for_pes=false; datentyp=file
2883	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2884	then
2885	files_for_pes=true; datentyp=directory
2886	actionin[$i]=""
2887	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2888	then
2889	actionin[$i]=""
2890	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2891	then
2892	files_for_pes=true; datentyp=directory
2893	actionin[$i]="ar"
2894	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2895	then
2896	actionin[$i]="ar"
2897	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2898	then
2899	files_for_pes=true; datentyp=directory
2900	actionin[$i]="fl"
2901	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2902	then
2903	actionin[$i]="fl"
2904	fi
2905
2906	if [[ $files_for_pes = true ]]
2907	then
2908	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2909	else
2910	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2911	fi
2912
2913	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2914	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2915	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2916	# SERVER ZU HOLEN
2917	if [[ "${actionin[$i]}" = fl ]]
2918	then
2919	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2920	if [[ $files_for_pes = false ]]
2921	then
2922	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2923	then
2924	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2925	got_tmp[$i]=true
2926	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2927	then
2928	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2929	printf "\n *** trying to use backup copy in \"$WORK\" "
2930	cp $WORK/${frelin[$i]} ${localin[$i]}
2931	else
2932	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2933	printf "\n or \"$tmp_data_catalog\" does not exist!"
2934	printf "\n *** trying to get copy from archive"
2935	actionin[$i]=ar
2936	fi
2937	else
2938	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2939	then
2940	mkdir ${localin[$i]}
2941	cd $tmp_data_catalog/${frelin[$i]}
2942	for file in $(ls *)
2943	do
2944	ln $file $TEMPDIR/${localin[$i]}
2945	done
2946	cd $TEMPDIR
2947	got_tmp[$i]=true
2948	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2949	then
2950	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2951	printf "\n *** trying to use backup copy in \"$WORK\" "
2952	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2953	else
2954	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2955	printf "\n or \"$tmp_data_catalog\" does not exist!"
2956	printf "\n *** trying to get copy from archive"
2957	actionin[$i]=ar
2958	fi
2959	fi
2960	fi
2961
2962
2963	# DATEI LIEGT AUF ARCHIV-SERVER
2964	if [[ "${actionin[$i]}" = ar ]]
2965	then
2966
2967	if [[ $files_for_pes = false ]]
2968	then
2969	printf "\n file will be restored from archive-system ($archive_system)!"
2970	else
2971	printf "\n directory will be restored from archive-system ($archive_system)!"
2972	fi
2973
2974	file_restored=false
2975
2976	if [[ $archive_system = asterix ]]
2977	then
2978	do_stagein=true
2979	(( stagein_anz = 0 ))
2980	while [[ $do_stagein = true ]]
2981	do
2982	if [[ $files_for_pes = false ]]
2983	then
2984	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2985	else
2986	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2987	fi
2988	cat STAGEIN_OUTPUT
2989	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2990	then
2991	file_restored=true
2992	do_stagein=false
2993	else
2994	(( stagein_anz = stagein_anz + 1 ))
2995	if (( stagein_anz == 10 ))
2996	then
2997	printf "\n +++ stagein stoped after 10 tries"
2998	locat=stage
2999	exit
3000	fi
3001	printf "\n +++ restoring from archive failed, trying again:"
3002	sleep 900
3003	fi
3004	done
3005	elif [[ $archive_system = DMF ]]
3006	then
3007	if [[ $files_for_pes = false ]]
3008	then
3009	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3010	locat=DMF
3011	exit
3012	else
3013	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3014	cp -r $ARCHIVE/${frelin[$i]} $PWD
3015	file_restored=true
3016	fi
3017	elif [[ $archive_system = tivoli ]]
3018	then
3019	if [[ $files_for_pes = false ]]
3020	then
3021	if [[ $localhost = lcsgih ]]
3022	then
3023	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3024	else
3025	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3026	fi
3027	else
3028	(( inode = 0 ))
3029	while (( inode < nodes ))
3030	do
3031	if [[ $localhost = lcsgih ]]
3032	then
3033	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3034	else
3035	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3036	fi
3037	(( inode = inode + 1 ))
3038	done
3039	fi
3040	file_restored=true
3041	elif [[ $archive_system = ut ]]
3042	then
3043	if [[ $files_for_pes = false ]]
3044	then
3045	cp $UT/${frelin[$i]} .
3046	else
3047	(( inode = 0 ))
3048	while (( inode < nodes ))
3049	do
3050	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3051	(( inode = inode + 1 ))
3052	done
3053	fi
3054	file_restored=true
3055	else
3056	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3057	locat=rearchive
3058	exit
3059	fi
3060
3061	if [[ $file_restored = true ]]
3062	then
3063
3064	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3065	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3066	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3067	if [[ $files_for_pes = false ]]
3068	then
3069	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3070	else
3071	mkdir $tmp_data_catalog/${frelin[$i]}
3072	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3073	fi
3074	got_tmp[$i]=true
3075
3076	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3077	mv ${frelin[$i]} ${localin[$i]}
3078
3079	fi
3080	fi
3081
3082
3083	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3084	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3085	then
3086
3087	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3088	then
3089
3090	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3091	printf "\n file will be provided for $numprocs processors"
3092	mkdir ${localin[$i]}
3093	ival=$numprocs
3094	(( ii = 0 ))
3095	while (( ii <= ival-1 ))
3096	do
3097	if (( ii < 10 ))
3098	then
3099	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3100	elif (( ii < 100 ))
3101	then
3102	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3103	elif (( ii < 1000 ))
3104	then
3105	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3106	else
3107	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3108	fi
3109	(( ii = ii + 1 ))
3110	done
3111
3112	else
3113
3114	if [[ $files_for_pes = true ]]
3115	then
3116
3117	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3118	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3119	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3120	# PER MOVE UMBENANNT WERDEN
3121	printf "\n providing $numprocs files for the respective processors"
3122	mkdir ${localin[$i]}
3123	if [[ $link_local_input = true ]]
3124	then
3125	printf " using ln -f\n"
3126	cd ${absnamein[$i]}
3127	for file in $(ls *)
3128	do
3129	ln -f $file ${localin[$i]}
3130	done
3131	cd $TEMPDIR
3132	fi
3133	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3134	if [[ ! -f "${localin[$i]}/_0000" ]]
3135	then
3136	if [[ $link_local_input = true ]]
3137	then
3138	printf " ln failed for .../_0000, using cp...\n"
3139	fi
3140	cp -r ${absnamein[$i]}/* ${localin[$i]}
3141	fi
3142
3143	else
3144	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3145	if [[ $link_local_input = true ]]
3146	then
3147	printf " using ln -f\n"
3148	ln -f ${absnamein[$i]} ${localin[$i]}
3149	fi
3150	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3151	if [[ ! -f "${localin[$i]}" ]]
3152	then
3153	if [[ $link_local_input = true ]]
3154	then
3155	printf " ln failed, using cp...\n"
3156	fi
3157	cp ${absnamein[$i]} ${localin[$i]}
3158	fi
3159	fi
3160	fi
3161	fi
3162
3163	done
3164	if (( i != 0 ))
3165	then
3166	printf "\n$striche\n *** all INPUT-files provided \n"
3167	fi
3168
3169
3170	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3171	(( i = 0 ))
3172	while (( i < iic ))
3173	do
3174	(( i = i + 1 ))
3175	if (( i == 1 ))
3176	then
3177	printf "\n\n *** execution of INPUT-commands:\n$striche"
3178	fi
3179	printf "\n >>> ${in_command[$i]}"
3180	eval ${in_command[$i]}
3181	if (( i == iic ))
3182	then
3183	printf "\n$striche\n"
3184	fi
3185	done
3186
3187
3188	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3189	cpurest=${cpumax}.
3190
3191
3192	# START DVR STREAMING SERVER
3193	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3194	then
3195	if [[ "$dvr_server" != "" ]]
3196	then
3197
3198	printf "\n\n *** preparing the dvr streaming server configuration file"
3199
3200	# Check, if a dvr server is already running
3201	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3202	if [[ "$running_dvrserver_id" != "" ]]
3203	then
3204
3205	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3206	printf "\n This server is used instead starting a new one!"
3207	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3208
3209	else
3210
3211	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3212	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3213	then
3214	cp ${PALM_BIN}/.dvrserver.config .
3215
3216	# Entering the BASEDIR, UID and GID into this file
3217	user_id=`id -u`
3218	group_id=`id -g`
3219	# & is needed as seperator, because TEMPDIR contains /
3220	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3221	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3222	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3223	mv .dvrserver.3 .dvrserver.config
3224	rm .dvrserver.1 .dvrserver.2
3225
3226	# Start dvr server in background, get his id and print on terminal
3227	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3228	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3229	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3230	local_dvrserver_running=.TRUE.
3231	else
3232	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3233	printf "\n \"$PALM_BIN\" "
3234	locat=dvr
3235	exit
3236	fi
3237
3238	fi
3239
3240	else
3241	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3242	fi
3243	fi
3244
3245
3246	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3247	# LESEN VON PALM)
3248	cat > ENVPAR << %%END%%
3249	&envpar run_identifier = '$fname', host = '$localhost',
3250	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3251	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3252	maximum_cpu_time_allowed = ${cpumax}.,
3253	revision = '$global_revision',
3254	local_dvrserver_running = $local_dvrserver_running /
3255
3256	%%END%%
3257
3258
3259	# PROGRAMMSTART
3260	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3261	PATH=$PATH:$TEMPDIR
3262
3263	# MPI debug option (argument checking, slows down execution due to increased latency)
3264	if [[ "$mpi_debug" = true ]]
3265	then
3266	export MPI_CHECK_ARGS=1
3267	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3268	fi
3269
3270	if [[ "$totalview" = true ]]
3271	then
3272	printf "\n *** totalview debugger will be used"
3273	tv_opt="-tv"
3274	else
3275	tv_opt=""
3276	fi
3277
3278	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3279	then
3280	if [[ "$ENVIRONMENT" = BATCH ]]
3281	then
3282	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3283	then
3284	printf "\n +++ debug is allowed in interactive mode only"
3285	locat=debug
3286	exit
3287	fi
3288	fi
3289	if [[ $localhost = ibmh ]]
3290	then
3291
3292	# SETUP THE IBM MPI ENVIRONMENT
3293	export MP_SHARED_MEMORY=yes
3294	export AIXTHREADS_SCOPE=S
3295	export OMP_NUM_THREADS=$threads_per_task
3296	export AUTHSTATE=files
3297	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3298
3299	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3300	export MP_ADAPTER_USE=shared
3301	export MP_CPU_USE=multiple
3302	export MP_TIMEOUT=1200
3303
3304	unset MP_TASK_AFFINITY
3305
3306	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3307	#(( ii = 1 ))
3308	#while (( ii <= $numprocs ))
3309	#do
3310	# echo $localhost_realname >> hostfile
3311	# (( ii = ii + 1 ))
3312	#done
3313	#export MP_HOSTFILE=hostfile
3314
3315	if [[ "$LOADLBATCH" = yes ]]
3316	then
3317	totalview poe a.out $ROPTS
3318	else
3319	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3320	export TVDSVRLAUNCHCMD=ssh
3321	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3322	fi
3323	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3324	then
3325	# CURRENTLY NO DEBUGGER ON LCSGI
3326	if [[ $run_coupled_model = true ]]
3327	then
3328	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3329	locat=debug
3330	exit
3331	else
3332	echo "no_coupling" > runfile_atmos
3333	fi
3334	(( ii = $numprocs / $threads_per_task ))
3335	export OMP_NUM_THREADS=$threads_per_task
3336	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3337	if [[ $threads_per_task != 1 ]]
3338	then
3339	printf "\n threads per task: $threads_per_task"
3340	fi
3341	printf "\n\n"
3342	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3343	then
3344	# export MPI_LAUNCH_TIMEOUT=360
3345	if [[ "$totalview" = true ]]
3346	then
3347	printf "\n running totalview debugger"
3348	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3349	else
3350	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3351	fi
3352	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3353	then
3354	# ulimit -s 300000 # A too large stack size causes problems
3355	# export MV2_NUM_PORTS=2
3356	# export MV2_CPU_MAPPING=0:1:2:3
3357	if [[ "$totalview" = true ]]
3358	then
3359	printf "\n running totalview debugger"
3360	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3361	else
3362	mpiexec ./a.out $ROPTS < runfile_atmos
3363	fi
3364	fi
3365	else
3366	printf "\n +++ no debug available on \"$localhost\" "
3367	printf "\n or not implemented in mrun so far"
3368	locat=debug
3369	exit
3370	fi
3371
3372	# end debug mode
3373	else
3374
3375	# normal execution
3376	if [[ -n $numprocs ]]
3377	then
3378	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3379	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3380	then
3381	# SETUP THE IBM MPI ENVIRONMENT
3382	if [[ $host != ibmh && $host != ibmkisti ]]
3383	then
3384	export MP_SHARED_MEMORY=yes
3385	export AIXTHREAD_SCOPE=S
3386	export OMP_NUM_THREADS=$threads_per_task
3387	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3388	export AUTHSTATE=files
3389	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3390	# export MP_PRINTENV=yes
3391
3392	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3393	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3394	export MP_WAIT_MODE=poll
3395	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3396	fi
3397
3398	if [[ $host = ibmkisti ]]
3399	then
3400	export LANG=en_US
3401	export MP_SHARED_MEMORY=yes
3402	if [[ $threads_per_task = 1 ]]
3403	then
3404	export MP_SINGLE_THREAD=yes
3405	export MEMORY_AFFINITY=MCM
3406	else
3407	export OMP_NUM_THREADS=$threads_per_task
3408	fi
3409	fi
3410
3411	if [[ "$LOADLBATCH" = yes ]]
3412	then
3413	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3414	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3415	then
3416	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3417	else
3418	if [[ $run_coupled_model = false ]]
3419	then
3420	if [[ "$ocean_file_appendix" = true ]]
3421	then
3422	echo "precursor_ocean" > runfile_atmos
3423	else
3424	echo "precursor_atmos" > runfile_atmos
3425	fi
3426	else
3427	(( iia = $numprocs_atmos / $threads_per_task ))
3428	(( iio = $numprocs_ocean / $threads_per_task ))
3429	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3430	printf "\n using $coupled_mode coupling"
3431	printf "\n\n"
3432	echo "coupled_run $iia $iio" > runfile_atmos
3433	fi
3434	poe ./a.out $ROPTS < runfile_atmos
3435	fi
3436	else
3437	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3438	then
3439	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3440	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3441	then
3442	if [[ -f $hostfile ]]
3443	then
3444	cp $hostfile hostfile
3445	else
3446	(( ii = 1 ))
3447	while (( ii <= $numprocs ))
3448	do
3449	echo $localhost_realname >> hostfile
3450	(( ii = ii + 1 ))
3451	done
3452	fi
3453	export MP_HOSTFILE=hostfile
3454	if [[ $run_coupled_model = false ]]
3455	then
3456	if [[ "$ocean_file_appendix" = true ]]
3457	then
3458	echo "precursor_ocean" > runfile_atmos
3459	else
3460	echo "precursor_atmos" > runfile_atmos
3461	fi
3462	else
3463	(( iia = $numprocs_atmos / $threads_per_task ))
3464	(( iio = $numprocs_ocean / $threads_per_task ))
3465	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3466	printf "\n using $coupled_mode coupling"
3467	printf "\n\n"
3468	echo "coupled_run $iia $iio" > runfile_atmos
3469	fi
3470	if [[ $localhost = ibmy ]]
3471	then
3472	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3473	else
3474	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3475	fi
3476
3477	else
3478	if [[ "$host_file" = "" ]]
3479	then
3480	printf "\n +++ no hostfile given in configuration file"
3481	locat=config_file
3482	exit
3483	else
3484	eval host_file=$host_file
3485	fi
3486	export MP_HOSTFILE=$host_file
3487	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3488	fi
3489	fi
3490	elif [[ $host = nech \|\| $host = necriam ]]
3491	then
3492	(( ii = nodes ))
3493	if [[ $ii = 1 ]]
3494	then
3495	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3496	export MPIPROGINF=YES
3497	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3498	echo "*** execution on single node with mpirun"
3499	mpirun -np $numprocs ./a.out $ROPTS
3500	else
3501	(( i = 0 ))
3502	while (( i < ii ))
3503	do
3504	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3505	(( i = i + 1 ))
3506	done
3507
3508	echo "#!/bin/sh" > mpi_exec_shell
3509	echo " " >> mpi_exec_shell
3510	echo "set -u" >> mpi_exec_shell
3511	echo "F_ERRCNT=0" >> mpi_exec_shell
3512	echo "MPIPROGINV=YES" >> mpi_exec_shell
3513	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3514	echo "cpurest=$cpurest" >> mpi_exec_shell
3515	echo "fname=$fname" >> mpi_exec_shell
3516	echo "localhost=$localhost" >> mpi_exec_shell
3517	echo "return_addres=$return_addres" >> mpi_exec_shell
3518	echo "return_username=$return_username" >> mpi_exec_shell
3519	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3520	echo "write_binary=$write_binary" >> mpi_exec_shell
3521	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3522	echo " " >> mpi_exec_shell
3523	echo "export F_ERRCNT" >> mpi_exec_shell
3524	echo "export MPIPROGINV" >> mpi_exec_shell
3525	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3526	echo "export cpurest" >> mpi_exec_shell
3527	echo "export fname" >> mpi_exec_shell
3528	echo "export localhost" >> mpi_exec_shell
3529	echo "export return_addres" >> mpi_exec_shell
3530	echo "export return_username" >> mpi_exec_shell
3531	echo "export tasks_per_node" >> mpi_exec_shell
3532	echo "export write_binary" >> mpi_exec_shell
3533	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3534	echo " " >> mpi_exec_shell
3535	echo "exec ./a.out" >> mpi_exec_shell
3536
3537	chmod u+x mpi_exec_shell
3538	export MPIPROGINF=YES
3539	mpirun -f multinode_config &
3540	wait
3541
3542	fi
3543	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3544	then
3545
3546	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3547	# DOES NOT EXIST
3548	if [[ $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3549	then
3550	if [[ -f $hostfile ]]
3551	then
3552	cp $hostfile hostfile
3553	(( ii = $numprocs / $threads_per_task ))
3554	else
3555	(( ii = 1 ))
3556	while (( ii <= $numprocs / $threads_per_task ))
3557	do
3558	echo $localhost_realname >> hostfile
3559	(( ii = ii + 1 ))
3560	done
3561	fi
3562	eval zeile=\"`head -n $ii hostfile`\"
3563	printf "\n *** running on: $zeile"
3564	fi
3565
3566	(( ii = $numprocs / $threads_per_task ))
3567	export OMP_NUM_THREADS=$threads_per_task
3568	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3569	if [[ $threads_per_task != 1 ]]
3570	then
3571	# increase stack size to unlimited, because large runs
3572	# may abort otherwise
3573	ulimit -Ss unlimited
3574	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3575	fi
3576	if [[ $run_coupled_model = false ]]
3577	then
3578	if [[ "$ocean_file_appendix" = true ]]
3579	then
3580	echo "precursor_ocean" > runfile_atmos
3581	else
3582	echo "precursor_atmos" > runfile_atmos
3583	fi
3584	printf "\n\n"
3585	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3586	then
3587	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3588	then
3589	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3590	# export MPI_DSM_DISTRIBUTE=1
3591	# MPI_DSM_CPULIST: pin MPI processes to cores
3592	if [[ $use_openmp = false ]]
3593	then
3594	if [[ "$sgi_feature" = ice2 ]]
3595	then
3596	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3597	else
3598	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3599	fi
3600	else
3601	unset MPI_DSM_CPULIST
3602	fi
3603	# MPI_IB_RAILS: use both IB rails on ICE2
3604	export MPI_BUFS_PER_HOST=512
3605	export MPI_IB_RAILS=2
3606	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3607	export MPI_CONNECTIONS_THRESHOLD=8192
3608	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3609	export MPI_TYPE_DEPTH=20
3610	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3611	export MPI_GROUP_MAX=64
3612	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3613	if [[ $use_openmp = true ]]
3614	then
3615	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3616	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3617	else
3618	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3619	fi
3620
3621	# next is test for openmp usage
3622	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3623	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3624	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3625	then
3626	export MV2_NUM_PORTS=2
3627	# The default setting of MV2_CPU_MAPPING gives best results
3628	# export MV2_ENABLE_AFFINITY=1
3629	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3630	# if [[ "$sgi_feature" = ice2 ]]
3631	# then
3632	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3633	# else
3634	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3635	# fi
3636	if [[ $use_openmp = true ]]
3637	then
3638	unset MV2_CPU_MAPPING
3639	export MV2_ENABLE_AFFINITY=0
3640	fi
3641	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3642	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3643	if [[ $use_openmp = true ]]
3644	then
3645	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3646	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3647	else
3648	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3649	fi
3650	elif [[ "$mpilib" = impi ]]
3651	then
3652	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3653	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3654	fi
3655	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3656	then
3657	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3658	elif [[ $host = lcflow ]]
3659	then
3660	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3661	elif [[ $host = lcsb ]]
3662	then
3663	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3664	elif [[ $host = lckiaps ]]
3665	then
3666	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3667	elif [[ $host = lckyu* ]]
3668	then
3669	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3670	else
3671	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3672	fi
3673	else
3674
3675	# currently there is no full MPI-2 support on ICE and XT4
3676	(( iia = $numprocs_atmos / $threads_per_task ))
3677	(( iio = $numprocs_ocean / $threads_per_task ))
3678	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3679	printf "\n using $coupled_mode coupling"
3680	printf "\n\n"
3681
3682	if [[ $coupled_mode = "mpi2" ]]
3683	then
3684	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3685	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3686	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3687	then
3688
3689	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3690	then
3691	# export MPI_LAUNCH_TIMEOUT=360
3692	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3693	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3694	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3695	then
3696	# ulimit -s 300000 # A too large stack size causes problems
3697	# export MV2_NUM_PORTS=2
3698	# export MV2_CPU_MAPPING=0:1:2:3
3699	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3700	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3701	fi
3702
3703	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3704	then
3705
3706	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3707	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3708
3709	else
3710	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3711	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3712	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3713	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3714	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3715	fi
3716	wait
3717
3718	else
3719
3720	echo "coupled_run $iia $iio" > runfile_atmos
3721	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3722	then
3723
3724	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3725	then
3726	# export MPI_LAUNCH_TIMEOUT=360
3727	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3728	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3729	then
3730	# ulimit -s 300000 # A too large stack size causes problems
3731	# export MV2_NUM_PORTS=2
3732	# export MV2_CPU_MAPPING=0:1:2:3
3733	mpiexec ./a.out $ROPTS < runfile_atmos
3734	fi
3735
3736	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3737	then
3738
3739	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3740
3741	elif [[ $host = lck \|\| $host = lckordi ]]
3742	then
3743
3744	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3745
3746	elif [[ $host = lckyu* ]]
3747	then
3748
3749	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3750
3751	fi
3752	wait
3753	fi
3754
3755	fi
3756	elif [[ $host = lckyoto ]]
3757	then
3758	set -xv
3759	export P4_RSHCOMMAND=plesh
3760	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3761	if [[ "$ENVIRONMENT" = BATCH ]]
3762	then
3763	if [[ "$cond2" = fujitsu ]]
3764	then
3765	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3766	elif [[ "cond2" = pgi ]]
3767	then
3768	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3769	else
3770	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3771	fi
3772	else
3773	if [[ "$cond2" = "" ]]
3774	then
3775	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3776	else
3777	mpirun -np $numprocs ./a.out $ROPTS
3778	fi
3779	fi
3780	set +xv
3781	elif [[ $host = lctit ]]
3782	then
3783	export OMP_NUM_THREADS=$threads_per_task
3784	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3785	if [[ "$threads_per_task" != 1 ]]
3786	then
3787	export MV2_ENABLE_AFFINITY=0
3788	fi
3789	echo "----- PBS_NODEFILE content:"
3790	cat $PBS_NODEFILE
3791	echo "-----"
3792	(( ii = $numprocs / $threads_per_task ))
3793	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3794	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3795	else
3796	mpprun -n $numprocs a.out $ROPTS
3797	fi
3798	[[ $? != 0 ]] && execution_error=true
3799
3800
3801	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3802	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3803	then
3804	apprentice
3805	fi
3806	else
3807	a.out $ROPTS
3808	fi
3809	fi
3810	if [[ $? != 0 \|\| $execution_error = true ]]
3811	then
3812
3813	# ABBRUCH BEI LAUFZEITFEHLER
3814	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3815	printf "\n +++ runtime error occured"
3816	locat=execution
3817	exit
3818	else
3819	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3820	printf "\n$striche\n *** execution finished \n"
3821
3822	# Stop the dvr streaming server and process the dvr output in order
3823	# to create dvrs- and html-files containing all streams
3824	if [[ "$dvrserver_id" != "" ]]
3825	then
3826	kill $dvrserver_id
3827	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3828
3829	# If there is a directory, data have been output by the
3830	# streaming server. Otherwise, user has chosen dvrp_output=local
3831	if [[ -d DATA_DVR ]]
3832	then
3833
3834	# Add the current dvr configuration file to the dvr output
3835	# directory
3836	cp .dvrserver.config DATA_DVR
3837
3838	# Process the dvr output (option -s for also generating
3839	# sequence mode data)
3840	process_dvr_output -d DATA_DVR -f $fname -s
3841
3842	else
3843
3844	# Process the local output
3845	process_dvr_output -l -d DATA_DVR -f $fname
3846
3847	fi
3848
3849	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3850	then
3851
3852	# Process dvr output generated in local mode (dvrp_output=local)
3853	process_dvr_output -l -d DATA_DVR -f $fname
3854
3855	fi
3856	fi
3857
3858
3859
3860	# Call of combine_plot_fields in order to merge single files written
3861	# by each PE into one file.
3862	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3863	then
3864	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3865	printf "\n 2d- and/or 3d-data may be incomplete!"
3866	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3867	elif [[ "$combine_plot_fields" == true ]]
3868	then
3869	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3870	combine_plot_fields${block}.x
3871	else
3872	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3873	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3874	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3875	fi
3876
3877
3878
3879	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3880	(( i = 0 ))
3881	while (( i < ioc ))
3882	do
3883	(( i = i + 1 ))
3884	if (( i == 1 ))
3885	then
3886	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3887	fi
3888	printf "\n >>> ${out_command[$i]}"
3889	eval ${out_command[$i]}
3890	if (( i == ioc ))
3891	then
3892	printf "\n$striche\n"
3893	fi
3894	done
3895
3896
3897	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3898	if [[ $do_trace = true ]]
3899	then
3900	printf "\n\n"
3901	ls -al
3902	fi
3903
3904
3905
3906	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3907	(( i = 0 ))
3908	while (( i < iout ))
3909	do
3910	(( i = i + 1 ))
3911	if (( i == 1 ))
3912	then
3913	printf "\n\n *** saving OUTPUT-files:\n$striche"
3914	fi
3915
3916	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3917	files_for_pes=false; filetyp=file
3918	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3919	then
3920	files_for_pes=true; filetyp=directory
3921	actionout[$i]=""
3922	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3923	then
3924	actionout[$i]=""
3925	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3926	then
3927	files_for_pes=true; filetyp=directory
3928	actionout[$i]="ar"
3929	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3930	then
3931	actionout[$i]="ar"
3932	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3933	then
3934	files_for_pes=true; filetyp=directory
3935	actionout[$i]="fl"
3936	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3937	then
3938	actionout[$i]="fl"
3939	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3940	then
3941	files_for_pes=true; filetyp=directory
3942	actionout[$i]="tr"
3943	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3944	then
3945	actionout[$i]="tr"
3946	fi
3947
3948	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3949	then
3950	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3951	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3952	then
3953	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3954	else
3955
3956
3957	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3958	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3959	# REMOTE-RECHNUNGEN
3960	if [[ "${actionout[$i]}" = tr ]]
3961	then
3962	if [[ $localhost != $fromhost ]]
3963	then
3964	if [[ $files_for_pes = false ]]
3965	then
3966	cps=""
3967	cst=""
3968	else
3969	cps=-c
3970	cst="/"
3971	fi
3972	if [[ $localhost = nech ]]
3973	then
3974
3975	# TRANSFER IN EIGENSTAENDIGEM JOB
3976	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3977	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3978	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3979	if [[ $files_for_pes = false ]]
3980	then
3981	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3982	else
3983	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3984	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3985	fi
3986
3987	echo "set -x" > transfer_${localout[$i]}
3988	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3989
3990	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3991	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3992	printf "\n or higher cycle\n"
3993	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3994
3995	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3996
3997	if [[ $localhost = nech ]]
3998	then
3999	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4000	else
4001	if [[ "$LOGNAME" = b323013 ]]
4002	then
4003	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4004	else
4005	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4006	fi
4007	fi
4008
4009	else
4010
4011	# TRANSFER INNERHALB DIESES JOBS
4012	transfer_failed=false
4013	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4014	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4015	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4016	[[ $? != 0 ]] && transfer_failed=true
4017
4018	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4019	# LOKALER MASCHINE ANLEGEN
4020	if [[ $transfer_failed = true ]]
4021	then
4022	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4023	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4024
4025	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4026	# ANLEGEN.
4027	eval local_catalog=${pathout[$i]}
4028	if [[ ! -d $local_catalog ]]
4029	then
4030	printf " *** local directory does not exist. Trying to create:\n"
4031	printf " $local_catalog \n"
4032	mkdir -p $local_catalog
4033	fi
4034	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4035	transfer_problems=true
4036	fi
4037	fi
4038	else
4039
4040	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4041	actionout[$i]=""
4042	fi
4043	fi
4044
4045
4046	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4047	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4048	# REMOTE-RECHNUNGEN
4049	if [[ "${actionout[$i]}" = tra ]]
4050	then
4051	if [[ $localhost != $fromhost ]]
4052	then
4053	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4054	then
4055
4056	# TRANSFER IN EIGENSTAENDIGEM JOB
4057	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4058	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4059	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4060	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4061
4062	echo "set -x" > transfer_${localout[$i]}
4063	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4064
4065	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4066	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4067	printf "\n or higher cycle\n"
4068	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4069
4070	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4071
4072	if [[ $localhost = nech ]]
4073	then
4074	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4075	else
4076	if [[ $LOGNAME = b323013 ]]
4077	then
4078	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4079	else
4080	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4081	fi
4082	fi
4083
4084	else
4085
4086	# TRANSFER INNERHALB DIESES JOBS
4087	transfer_failed=false
4088	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4089	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4090	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4091	[[ $? != 0 ]] && transfer_failed=true
4092
4093	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4094	# LOKALER MASCHINE ANLEGEN
4095	if [[ $transfer_failed = true ]]
4096	then
4097	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4098	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4099
4100	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4101	# ANLEGEN
4102	eval local_catalog=${pathout[$i]}
4103	if [[ ! -d $local_catalog ]]
4104	then
4105	printf " *** local directory does not exist. Trying to create:\n"
4106	printf " $local_catalog \n"
4107	mkdir -p $local_catalog
4108	fi
4109
4110	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4111	transfer_problems=true
4112	fi
4113	fi
4114	else
4115
4116	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4117	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4118	actionout[$i]=a
4119	fi
4120	fi
4121
4122
4123	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4124	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4125	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4126	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4127	if [[ "${actionout[$i]}" = fl ]]
4128	then
4129	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4130	chmod g+rx $tmp_data_catalog
4131	if [[ $files_for_pes = false ]]
4132	then
4133	printf "\n >>> OUTPUT: ${localout[$i]} to"
4134	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4135	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4136	else
4137	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4138	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4139	mkdir $tmp_data_catalog/${frelout[$i]}
4140	cd ${localout[$i]}
4141	for file in $(ls *)
4142	do
4143	ln -f $file $tmp_data_catalog/${frelout[$i]}
4144	done
4145	cd $TEMPDIR
4146	fi
4147
4148
4149	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4150	if [[ $store_on_archive_system = true ]]
4151	then
4152
4153	if [[ $archive_system = asterix ]]
4154	then
4155	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4156	if [[ $files_for_pes = false ]]
4157	then
4158	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4159	else
4160	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4161	fi
4162	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4163	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4164	echo "then" >> archive_${frelout[$i]}
4165	echo " do_stageout=false" >> archive_${frelout[$i]}
4166	echo "else" >> archive_${frelout[$i]}
4167	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4168	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4169	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4170	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4171	if [[ $files_for_pes = false ]]
4172	then
4173	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4174	else
4175	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4176	fi
4177	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4178	echo "fi" >> archive_${frelout[$i]}
4179	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4180	elif [[ $archive_system = DMF ]]
4181	then
4182	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4183	if [[ $files_for_pes = false ]]
4184	then
4185	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4186	locat=DMF
4187	exit
4188	else
4189	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4190	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4191	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4192	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4193	fi
4194	elif [[ $archive_system = tivoli ]]
4195	then
4196	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4197	if [[ $files_for_pes = false ]]
4198	then
4199	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4200	echo "set -x" >> archive_${frelout[$i]}
4201	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4202	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4203	else
4204
4205	echo "set -x" >> archive_${frelout[$i]}
4206	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4207	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4208	cd $tmp_data_catalog
4209	all_files=`ls -1 ${frelout[$i]}/*`
4210	cd - > /dev/null
4211	(( inode = 0 ))
4212	(( tp1 = tasks_per_node + 1 ))
4213	while (( inode < nodes ))
4214	do
4215	# echo "*** all_files = \"$all_files\" "
4216	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4217	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4218	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4219	# echo "*** files = \"$files\" "
4220	# echo "*** all_files = \"$all_files\" "
4221	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4222	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4223	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4224	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4225	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4226	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4227	(( inode = inode + 1 ))
4228	done
4229	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4230	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4231	fi
4232	elif [[ $archive_system = ut ]]
4233	then
4234	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4235	if [[ $files_for_pes = false ]]
4236	then
4237	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4238	echo "set -x" >> archive_${frelout[$i]}
4239	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4240	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4241	else
4242
4243	echo "set -x" >> archive_${frelout[$i]}
4244	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4245	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4246	cd $tmp_data_catalog
4247	all_files=`ls -1 ${frelout[$i]}/*`
4248	cd - > /dev/null
4249	(( inode = 0 ))
4250	(( tp1 = tasks_per_node + 1 ))
4251	while (( inode < nodes ))
4252	do
4253	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4254	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4255	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4256	(( inode = inode + 1 ))
4257	done
4258	fi
4259	elif [[ $archive_system = none ]]
4260	then
4261	printf " +++ archiving on $localhost not available!\n"
4262	fi
4263
4264	if [[ $archive_system != none ]]
4265	then
4266	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4267	then
4268	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4269	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4270	elif [[ $localhost = nech ]]
4271	then
4272	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4273	fi
4274	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4275	fi
4276	else
4277	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4278	fi
4279
4280
4281	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4282	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4283	if [[ $files_for_pes = false ]]
4284	then
4285	cat /dev/null > ${pathout[$i]}
4286	else
4287	mkdir -p ${pathout[$i]}
4288	fi
4289
4290	fi
4291
4292
4293	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4294	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4295	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4296	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4297	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4298	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4299	if [[ "${actionout[$i]}" = ar ]]
4300	then
4301	if [[ $files_for_pes = false ]]
4302	then
4303	printf "\n >>> OUTPUT: ${localout[$i]} to"
4304	printf "\n ${pathout[$i]}"
4305	printf "\n File will be copied to archive-system ($archive_system) !\n"
4306	else
4307	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4308	printf "\n ${pathout[$i]}"
4309	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4310	fi
4311	mv ${localout[$i]} ${frelout[$i]}
4312
4313	file_saved=false
4314
4315	if [[ $archive_system = asterix ]]
4316	then
4317	do_stageout=true
4318	(( stageout_anz = 0 ))
4319	while [[ $do_stageout = true ]]
4320	do
4321	if [[ $files_for_pes = false ]]
4322	then
4323	stageout ${frelout[$i]} > STAGE_OUTPUT
4324	else
4325	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4326	fi
4327	cat STAGE_OUTPUT
4328	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4329	then
4330	file_saved=true
4331	do_stageout=false
4332	else
4333	if [[ $files_for_pes = false ]]
4334	then
4335	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4336	else
4337	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4338	fi
4339	(( stageout_anz = stageout_anz + 1 ))
4340	if (( stageout_anz == 10 ))
4341	then
4342	printf "\n +++ stoped after 10 unsuccessful tries!"
4343	archive_save=false
4344	do_stageout=false
4345	else
4346	printf "\n *** new try to store on archive after 15 min:"
4347	sleep 900
4348	fi
4349	fi
4350	done
4351	elif [[ $archive_system = DMF ]]
4352	then
4353	if [[ $files_for_pes = false ]]
4354	then
4355	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4356	locat=DMF
4357	exit
4358	else
4359	rm -rf $ARCHIVE/${frelout[$i]}
4360	cp -r ${frelout[$i]} $ARCHIVE
4361	fi
4362	file_saved=true
4363	elif [[ $archive_system = tivoli ]]
4364	then
4365	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4366	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4367	# GELEGT WERDEN
4368	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4369	chmod g+rx $tmp_data_catalog
4370	if [[ $files_for_pes = false ]]
4371	then
4372	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4373	else
4374	mkdir $tmp_data_catalog/${frelout[$i]}
4375	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4376	fi
4377
4378	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4379	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4380	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4381	if [[ $files_for_pes = false ]]
4382	then
4383	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4384	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4385	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4386	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4387	else
4388	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4389	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4390	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4391	fi
4392
4393	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4394	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4395	file_saved=true
4396
4397	elif [[ $archive_system = ut ]]
4398	then
4399	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4400	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4401	# GELEGT WERDEN
4402	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4403	chmod g+rx $tmp_data_catalog
4404	if [[ $files_for_pes = false ]]
4405	then
4406	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4407	else
4408	mkdir $tmp_data_catalog/${frelout[$i]}
4409	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4410	fi
4411
4412	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4413	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4414	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4415	if [[ $files_for_pes = false ]]
4416	then
4417	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4418	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4419	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4420	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4421	else
4422	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4423	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4424	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4425	fi
4426
4427	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4428	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4429	file_saved=true
4430
4431	else
4432	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4433	archive_save=false
4434	fi
4435	if [[ $file_saved = true ]]
4436	then
4437	if [[ $files_for_pes = false ]]
4438	then
4439	cat /dev/null > ${pathout[$i]}
4440	else
4441	mkdir -p ${pathout[$i]}
4442	fi
4443	fi
4444	fi
4445
4446	# APPEND AUF LOKALER MASCHINE
4447	if [[ "${actionout[$i]}" = "a" ]]
4448	then
4449	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4450	then
4451	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4452	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4453	else
4454	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4455	cat ${localout[$i]} >> ${pathout[$i]}
4456	fi
4457	fi
4458
4459	# KOPIEREN AUF LOKALER MASCHINE
4460	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4461	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4462	then
4463
4464	# KOPIEREN AUF EINPROZESSORMASCHINE
4465	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4466	then
4467	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4468	if [[ $link_local_output = true ]]
4469	then
4470	printf " using ln -f\n"
4471	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4472	fi
4473	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4474	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4475	then
4476	if [[ $link_local_output = true ]]
4477	then
4478	printf " ln failed, using cp...\n"
4479	fi
4480	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4481	fi
4482	else
4483	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4484	if [[ $link_local_output = true ]]
4485	then
4486	printf " using ln -f\n"
4487	ln -f ${localout[$i]} ${pathout[$i]}
4488	fi
4489	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4490	if [[ ! -f "${pathout[$i]}" ]]
4491	then
4492	if [[ $link_local_output = true ]]
4493	then
4494	printf " ln failed, using cp...\n"
4495	fi
4496	cp ${localout[$i]} ${pathout[$i]}
4497	fi
4498	fi
4499
4500	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4501	then
4502
4503	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4504	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4505	# WIRD DANN KOPIERT
4506	# PER MOVE UMBENANNT WERDEN
4507	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4508	if [[ $link_local_output = true ]]
4509	then
4510	printf " using ln -f\n"
4511	mkdir ${pathout[$i]}
4512	cd ${localout[$i]}
4513	for file in $(ls *)
4514	do
4515	ln -f $file ${pathout[$i]}
4516	done
4517	cd $TEMPDIR
4518	fi
4519	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4520	if [[ ! -f "${pathout[$i]}/_0000" ]]
4521	then
4522	if [[ $link_local_output = true ]]
4523	then
4524	printf " ln failed for .../_0000, using cp...\n"
4525	fi
4526	cp -r ${localout[$i]} ${pathout[$i]}
4527	fi
4528
4529	fi
4530	fi
4531	done
4532	if (( i != 0 ))
4533	then
4534	if [[ $transfer_problems = true ]]
4535	then
4536	printf "\n$striche\n *** OUTPUT-files saved"
4537	printf "\n +++ WARNING: some data transfers failed! \n"
4538	else
4539	printf "\n$striche\n *** all OUTPUT-files saved \n"
4540	fi
4541	fi
4542
4543
4544	# EVENTUELL FOLGEJOB STARTEN
4545	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4546	if [[ -f CONTINUE_RUN ]]
4547	then
4548
4549	if [[ $archive_save = true ]]
4550	then
4551
4552	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4553	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4554	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4555	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4556	# HANDEN
4557	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4558	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4559	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4560	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4561	then
4562	mc=`echo $mc \| sed 's/#/f/g'`
4563	fi
4564
4565
4566	# JOB STARTEN
4567	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4568	echo " $mc"
4569	printf "\n$striche\n"
4570	if [[ $localhost != $fromhost ]]
4571	then
4572
4573	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4574	then
4575	echo "*** ssh will be used to initiate restart-runs!"
4576	echo " return_addres=\"$return_addres\" "
4577	echo " return_username=\"$return_username\" "
4578	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4579	then
4580	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4581	else
4582	if [[ $localhost = ibmkisti ]]
4583	then
4584	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4585	else
4586	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4587	fi
4588	fi
4589	else
4590	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4591	locat=restart; exit
4592	fi
4593
4594	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4595	# DER AKTUELLE JOB ENDET
4596	if [[ $queue = special1q ]]
4597	then
4598	sleep 120
4599	else
4600	sleep 30
4601	fi
4602
4603	else
4604
4605	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4606	# RUFEN WERDEN, AUSSER AUF lcfimm
4607	cd $LOCAL_PWD
4608	if [[ $localhost = lcfimm ]]
4609	then
4610	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4611	elif [[ $localhost = lckyuh ]]
4612	then
4613	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4614	printf "\n please restart job manually using command:\n"
4615	printf "\n \"$mc\" "
4616	else
4617	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4618	fi
4619	cd - > /dev/null
4620	fi
4621	if [[ $localhost = lckyuh ]]
4622	then
4623	printf "\n$striche\n *** restart-run to be initiated manually\n"
4624	else
4625	printf "\n$striche\n *** restart-run initiated \n"
4626	fi
4627
4628
4629	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4630	# GEHOLT WORDEN SIND, LOESCHEN
4631	(( i = 0 ))
4632	while (( i < iin ))
4633	do
4634	(( i = i + 1 ))
4635	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4636	then
4637	rm -r $tmp_data_catalog/${frelin[$i]}
4638	fi
4639	done
4640
4641	else
4642
4643	printf "\n +++ no restart-run possible, since errors occured"
4644	printf "\n during the archive process"
4645	fi
4646
4647	fi
4648
4649
4650
4651	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4652	if [[ "$email_notification" != "none" ]]
4653	then
4654
4655	if [[ $localhost != $fromhost ]]
4656	then
4657	if [[ -f CONTINUE_RUN ]]
4658	then
4659	echo "PALM restart run necessary" > email_text
4660	echo "description header of actual run:" >> email_text
4661	cat CONTINUE_RUN >> email_text
4662	echo "mrun-command to restart:" >> email_text
4663	echo "$mc" >> email_text
4664	else
4665	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4666	fi
4667	mail $email_notification < email_text
4668	printf "\n *** email notification sent to \"$email_notification\" "
4669	fi
4670	fi
4671
4672
4673
4674	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4675	cd $HOME
4676	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4677
4678	else
4679
4680
4681	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4682	# CHENDE AKTIONEN DURCHGEFUEHRT
4683
4684	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4685	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4686	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4687	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4688	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4689	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4690	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4691	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4692	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4693	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4694	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4695	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4696	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4697	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4698	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4699	if [[ $use_openmp = true ]]
4700	then
4701	mrun_com=${mrun_com}" -O $threads_per_task"
4702	fi
4703	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4704	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4705	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4706	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4707	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4708	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4709	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4710	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4711	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4712	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4713	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4714	if [[ $do_remote = true ]]
4715	then
4716	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4717	fi
4718
4719
4720	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4721	jobfile=jobfile.$RANDOM
4722
4723
4724	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4725	echo "mkdir $TEMPDIR" >> $jobfile
4726	echo "cd $TEMPDIR" >> $jobfile
4727
4728
4729	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4730	if [[ $do_trace = true ]]
4731	then
4732	echo "set -x" >> $jobfile
4733	else
4734	echo "set +vx" >> $jobfile
4735	fi
4736
4737
4738	# initialize the environment and load modules
4739	if [[ "$init_cmds" != "" ]]
4740	then
4741	echo "$init_cmds" >> $jobfile
4742	fi
4743	if [[ "$module_calls" != "" ]]
4744	then
4745	echo "$module_calls" >> $jobfile
4746	fi
4747
4748
4749	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4750	# DATEI FUER DEN JOB
4751	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4752	then
4753
4754	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4755	# KOPIEREN
4756	if [[ $restart_run != true ]]
4757	then
4758	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4759	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4760	fi
4761
4762	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4763	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4764	echo "set -x" >> $jobfile
4765	if [[ $host = $localhost ]]
4766	then
4767	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4768	else
4769	if [[ $host != ibmkisti ]]
4770	then
4771	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4772	else
4773	# on KISTI's IBM firewall is only opened on interactive node
4774	echo "localdir=\`pwd\`" >> $jobfile
4775	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4776	fi
4777	fi
4778	echo "export SOURCES_COMPLETE=true" >> $jobfile
4779
4780	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4781	# ARBEITSVERZEICHNIS VERSCHIEBEN
4782	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4783	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4784	echo "execute_mrun=true" >> $jobfile
4785	echo " " >> $jobfile
4786
4787	else
4788
4789	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4790	# SOWIE GEGEBENENFALLS DES MAKEFILES
4791	if [[ $do_compile = true ]]
4792	then
4793
4794	source_catalog=SOURCES_FOR_RUN_$fname
4795
4796	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4797	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4798	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4799	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4800	echo "export SOURCES_COMPLETE=true" >> $jobfile
4801	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4802
4803	for filename in $source_list
4804	do
4805	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4806	echo "cat > $filename << \"%END%\"" >> $jobfile
4807	cat $source_catalog/$filename >> $jobfile
4808	echo " " >> $jobfile
4809	echo "%END%" >> $jobfile
4810	echo " " >> $jobfile
4811	done
4812
4813	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4814	echo "cat > Makefile << \"%END%\"" >> $jobfile
4815	cat $source_catalog/Makefile >> $jobfile
4816	echo " " >> $jobfile
4817	echo "%END%" >> $jobfile
4818	echo " " >> $jobfile
4819
4820	echo "cd - > /dev/null" >> $jobfile
4821
4822	fi
4823
4824
4825	# ABSPEICHERN DER KONFIGURATIONSDATEI
4826	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4827	# Lines with #$ coming from the svn keyword substitution are
4828	# removed from the config file in order to avoid problems
4829	# with the SGE batch system
4830	echo "cat > $config_file << \"%END%\"" >> $jobfile
4831	if [[ $host = lckyuh ]]
4832	then
4833	# no cross compiler on compute node
4834	sed 's/frtpx/frt/g' $config_file >> $jobfile
4835	else
4836	sed 's/#$.*//g' $config_file >> $jobfile
4837	fi
4838	echo "%END%" >> $jobfile
4839	echo " " >> $jobfile
4840
4841
4842	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4843	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4844	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4845	if [[ $host = lckyuh ]]
4846	then
4847	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4848	else
4849	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4850	fi
4851	echo "%END%" >> $jobfile
4852	echo "chmod u+x $mrun_script_name" >> $jobfile
4853	echo "execute_mrun=true" >> $jobfile
4854	echo " " >> $jobfile
4855
4856	fi
4857
4858
4859	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4860	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4861	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4862	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4863	if [[ $do_remote = true ]]
4864	then
4865	(( i = 0 ))
4866	while (( i < iin ))
4867	do
4868	(( i = i + 1 ))
4869	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4870	if [[ "${transin[$i]}" = job ]]
4871	then
4872	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4873	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4874	echo " " >> $jobfile
4875	echo "%END%" >> $jobfile
4876	else
4877	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4878	fi
4879
4880	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4881	echo "if [[ \$? = 1 ]]" >> $jobfile
4882	echo "then" >> $jobfile
4883	echo " echo \" \" " >> $jobfile
4884	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4885	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4886	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4887	echo " execute_mrun=false" >> $jobfile
4888	echo "fi" >> $jobfile
4889	done
4890	fi
4891
4892	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4893	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4894	echo "LOCAL_PWD=$working_directory" >> $jobfile
4895	echo "export LOCAL_PWD" >> $jobfile
4896
4897	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4898	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4899	echo "export LOCAL_MRUN_PATH" >> $jobfile
4900
4901	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4902	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4903	then
4904	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4905	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4906	then
4907	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4908	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4909	fi
4910
4911	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4912	echo "set -x" >> $jobfile
4913	echo "queue=$queue" >> $jobfile
4914	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4915	echo 'ls -al; echo `pwd`' >> $jobfile
4916	echo "cd \$HOME" >> $jobfile
4917	echo "rm -rf $TEMPDIR" >> $jobfile
4918
4919
4920
4921
4922	# JOB PER SUBJOB STARTEN
4923	if [[ $silent = false ]]
4924	then
4925	printf "\n "
4926	else
4927	printf "\n\n"
4928	fi
4929
4930	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4931	rm -rf $jobfile
4932
4933
4934	fi # ENDE REMOTE-TEIL
4935
4936
4937
4938	# ENDE DER PROZEDUR

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