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mrun @ 1106

Last change on this file since 1106 was 1106, checked in by raasch, 11 years ago

New:
---

Porting of FFT-solver for serial runs to GPU using CUDA FFT,
preprocessor lines in transpose routines rearranged, so that routines can also
be used in serial (non-parallel) mode,
transpositions also carried out in serial mode, routines fftx, fftxp replaced
by calls of fft_x, fft_x replaced by fft_x_1d in the 1D-decomposition routines
(Makefile, Makefile_check, fft_xy, poisfft, poisfft_hybrid, transpose, new: cuda_fft_interfaces)

--stdin argument for mpiexec on lckyuh, -y and -Y settings output to header (mrun)

Changed:

Module array_kind renamed precision_kind
(check_open, data_output_3d, fft_xy, modules, user_data_output_3d)

some format changes for coupled atmosphere-ocean runs (header)
small changes in code formatting (microphysics, prognostic_equations)

Errors:

bugfix: default value (0) assigned to coupling_start_time (modules)
bugfix: initial time for preruns of coupled runs is output as -coupling_start_time (data_output_profiles)

Property svn:keywords set to Id Rev

File size: 180.0 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# --stdin argument for mpiexec on lckyuh
25	# -y and -Y settings output to header
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: mrun 1106 2013-03-04 05:31:38Z raasch $
30	#
31	# 1103 2013-02-20 02:15:53Z raasch
32	# default script runs again under ksh, because of unsolved problems with read
33	# from stdin: when bash script is called from a ksh, message "read error: 0:
34	# Resource temporarily unavailable" appears and script does not stop,
35	# further bash compatibility adjustments,
36	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
37	# on lckyuh, but mrun does not terminate and issues a warning instead
38	#
39	# 1101 2013-02-17 10:20:21Z raasch
40	# script now running under bash instead of ksh, which required small adjustments
41	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
42	# read from stdin),
43	# cross compilername on lckyuh compute nodes replaced by real compiler name
44	#
45	# 1099 2013-02-10 01:47:43Z raasch
46	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
47	# and for Forwind cluster (lcflow)
48	# small further adjustments for lckyut
49	#
50	# 1094 2013-02-03 01:52:12Z raasch
51	# explicit ssh/scp port can be set in config file with environment variable
52	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
53	# decalpha parts (yonsei) removed
54	#
55	# 2013-02-02 07:06:13Z raasch
56	# adjustments for Kyushu-University computing center (lckyut - tatara)
57	#
58	# 1083 2013-01-04 10:22:09Z maronga
59	# bugfix in parameter file check (read %cpp_options was missing)
60	#
61	# 1069 2012-11-28 16:18:43Z maronga
62	# bugfix: coupling mode was always set to mpi2, typos removed
63	#
64	# 1058 2012-11-21 07:00:35Z raasch
65	# Intel inspector (inspxe) is given the number of PEs instead of the number of
66	# nodes
67	#
68	# 1046 2012-11-09 14:38:45Z maronga
69	# code put under GPL (PALM 3.9)
70	#
71	# 21/03/94 - Siggi - first version finished
72	# 03/03/94 - Siggi - script development started
73	#
74	#--------------------------------------------------------------------------------#
75	# mrun - script for running PALM jobs
76	#--------------------------------------------------------------------------------#
77
78
79
80	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
81
82	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
83	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
84	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
85
86	AddFilenames=""
87	additional_conditions=""
88	add_source_path=""
89	afname=""
90	archive_save=true
91	archive_system=none
92	check_namelist_files=true
93	combine_plot_fields=true
94	compiler_name=""
95	cond1=""
96	cond2=""
97	config_file=.mrun.config
98	coupled_dist=""
99	coupled_mode="mpi1"
100	cpp_opts=""
101	cpp_options=""
102	cpumax=0
103	cpurest=0
104	delete_temporary_catalog=true
105	do_batch=false
106	do_compile=true
107	do_remote=false
108	do_stagein=true
109	do_stageout=true
110	do_trace=false
111	email_notification="none"
112	exclude=""
113	executable=""
114	execution_error=false
115	fimm=false
116	fname=test
117	fromhost=""
118	global_revision=""
119	group_number=none
120	host=""
121	host_file=""
122	hp=""
123	ignore_archive_error=false
124	input_list=""
125	interpreted_config_file=""
126	job_catalog="~/job_queue"
127	job_on_file=""
128	keep_data_from_previous_run=false
129	link_local_input=false
130	link_local_output=false
131	localhost_realname=$(hostname)
132	local_compile=false
133	local_dvrserver_running=.FALSE.
134	locat=normal
135	mainprog=""
136	makefile=""
137	max_par_io_str=""
138	mc=$0
139	while [[ $(echo $mc \| grep -c "/") != 0 ]]
140	do
141	mc=`echo $mc \| cut -f2- -d"/"`
142	done
143	module_calls=""
144	mrun_script_name=$mc
145	netcdf_inc=""
146	netcdf_lib=""
147	netcdf_support=false
148	node_usage=default
149	numprocs=""
150	numprocs_atmos=0
151	numprocs_ocean=0
152	OOPT=""
153	openmp=false
154	output_list=""
155	package_list=""
156	punkte="..........................................................."
157	queue=none
158	read_from_config=""
159	restart_run=false
160	if [[ `hostname` = rte10 ]]
161	then
162	return_addres=133.5.185.60
163	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
164	elif [[ `hostname` = climate0 ]]
165	then
166	return_addres=165.132.26.68
167	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
168	elif [[ `hostname` = urban00 ]]
169	then
170	return_addres=147.46.30.151
171	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
172	else
173	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
174	fi
175	return_password=""
176	return_username=$LOGNAME
177	remotecall=false
178	remote_username=""
179	run_coupled_model=false
180	run_mode=""
181	scirocco=false
182	store_on_archive_system=false
183	striche=" ----------------------------------------------------------------------------"
184	silent=false
185	source_list=""
186	source_path=SOURCE
187	tasks_per_node=""
188	threads_per_task=1
189	tmpcreate=false
190	tmp_data_catalog=""
191	transfer_problems=false
192	usern=$LOGNAME
193	use_openmp=false
194	version="MRUN 2.0 Rev$Rev: 1106 $"
195	working_directory=`pwd`
196	TOPT=""
197	XOPT=""
198	zeit=$( date \| cut -c 12-19 )
199
200	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
201	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
202
203
204
205
206	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
207	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
208
209	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
210	# EXPORTIERT WERDEN
211	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
212	export group_number input_list memory numprocs output_list queue run_mode
213
214
215
216	# FEHLERBEHANDLUNG
217	# BEI EXIT:
218	trap 'rm -rf $working_directory/tmp_mrun
219	if [[ $locat != localhost ]]
220	then
221	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
222	# then
223	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
224	#MRUN-calls on $localhost
225	#
226	#date and time user localhost remotehost termination mrun-command
227	#--------------------------------------------------------------------------------------------------------------------
228	#%STATEND%
229	# chmod 666 ${mrun_path}/statistik/mrun_statistik
230	# fi
231	#
232	# # EINTRAG IN DIE STATISTIK-DATEI
233	# string1=`date` #-L35
234	# string2=$usern #-L12
235	# string3=$localhost_realname #-L12
236	# string4=$host #-L12
237	# string5=$locat #-L12
238	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
239	# then
240	# if [[ $do_batch = true ]]
241	# then
242	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
243	# else
244	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
245	# fi
246	# fi
247	echo " " > /dev/null
248	fi
249
250	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
251	then
252
253	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
254	(( i = 0 ))
255	while (( i < iec ))
256	do
257	(( i = i + 1 ))
258	printf "\n *** Execution of ERROR-command:\n"
259	printf " >>> ${err_command[$i]}\n"
260	eval ${err_command[$i]}
261	done
262	if [[ -n $interpreted_config_file ]]
263	then
264	rm -rf $interpreted_config_file
265	fi
266	if [[ -n .mrun_environment ]]
267	then
268	rm -rf .mrun_environment
269	fi
270	if [[ $tmpcreate = true ]]
271	then
272	printf "\n *** Contents of \"$TEMPDIR\":\n"
273	ls -al; cd
274	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
275	fi
276	if [[ "$dvrserver_id" != "" ]]
277	then
278	echo "+++ killing dvrserver_id=$dvrserver_id"
279	kill $dvrserver_id
280	fi
281	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
282	then
283	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
284	fi
285	printf "\n\n+++ MRUN killed \n\n"
286	elif [[ $locat != control_c ]]
287	then
288	printf "\n\n --> all actions finished\n\n"
289	printf " Bye, bye $usern !!\n\n"
290	fi' exit
291
292
293	# BEI TERMINAL-BREAK:
294	trap 'rm -rf $working_directory/tmp_mrun
295	rm -rf $working_directory/tmp_check_namelist_files
296	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
297	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
298	then
299	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
300	fi
301	if [[ "$dvrserver_id" != "" ]]
302	then
303	echo "+++ killing dvrserver_id=$dvrserver_id"
304	kill $dvrserver_id
305	fi
306	printf "\n+++ MRUN killed by \"^C\" \n\n"
307	locat=control_c
308	exit
309	' 2
310
311
312	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
313	# BEEN SET
314	if [[ "$PALM_BIN" = "" ]]
315	then
316	printf "\n +++ environment variable PALM_BIN has not been set"
317	printf "\n please set it to the directory where the PALM scripts are located"
318	locat=palm_bin; exit
319	fi
320	export PATH=$PALM_BIN:$PATH
321
322
323
324	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
325	# FUER FOLGEJOBS BENOETIGT WIRD
326	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
327	do
328	case $option in
329	(a) afname=$OPTARG;;
330	(A) store_on_archive_system=true; mc="$mc -A";;
331	(b) do_batch=true; mc="$mc -b";;
332	(B) delete_temporary_catalog=false; mc="$mc -B";;
333	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
334	(C) restart_run=true; mc="$mc -C";;
335	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
336	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
337	(F) job_on_file="-D"; mc="$mc -F";;
338	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
339	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
340	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
341	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
342	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
343	(I) ignore_archive_error=true; mc="$mc -I";;
344	(k) keep_data_from_previous_run=true; mc="$mc -k";;
345	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
346	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
347	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
348	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
349	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
350	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
351	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
352	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
353	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
354	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
355	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
356	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
357	(S) read_from_config=false; mc="$mc -S";;
358	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
359	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
360	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
361	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
362	(v) silent=true; mc="$mc -v";;
363	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
364	(x) do_trace=true;set -x; mc="$mc -x";;
365	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
366	(y) ocean_file_appendix=true; mc="$mc -y";;
367	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
368	(z) check_namelist_files=false; mc="$mc -z";;
369	(Z) combine_plot_fields=false; mc="$mc -Z";;
370	(\?) printf "\n +++ unknown option $OPTARG \n"
371	printf "\n --> type \"$0 ?\" for available options \n"
372	locat=parameter;exit;;
373	esac
374	done
375
376
377	# EVTL. POSITIONSPARAMETER EINLESEN
378	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
379	(( to_shift = $OPTIND - 1 ))
380	shift $to_shift
381
382	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
383	if [[ "$1" = "?" ]]
384	then
385	(printf "\n *** mrun can be called as follows:\n"
386	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
387	printf "\n Description of available options:\n"
388	printf "\n Option Description Default-Value"
389	printf "\n -a base name of input files equiv. -d"
390	printf "\n -A archiving when using file-attribute fl"
391	printf "\n -b batch-job on local machine ---"
392	printf "\n -B do not delete temporary directory at end ---"
393	printf "\n -c configuration file .mrun.config"
394	printf "\n -d base name of files attached to program test"
395	printf "\n -D preprocessor(cpp)-directives \"\" "
396	printf "\n -F create remote job file only ---"
397	printf "\n -h execution host $localhost_realname"
398	printf "\n -i INPUT control list \"\" "
399	printf "\n -I archiving errors of previous batch-jobs"
400	printf "\n will be ignored"
401	printf "\n -k keep data from previous run"
402	printf "\n -K additional conditions for controling"
403	printf "\n usage of conditional code and"
404	printf "\n env-variables in configuration file \"\" "
405	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
406	printf "\n -M Makefile name Makefile"
407	printf "\n -n node usage (shared/not_shared) depending on -h"
408	printf "\n -o OUTPUT control list \"\" "
409	printf "\n -O use OpenMP ---"
410	printf "\n -p software package list \"\" "
411	printf "\n -q queue \"$queue\" "
412	printf "\n -r run control list (combines -i -o) \"\" "
413	printf "\n -s filenames of routines to be compiled \"\" "
414	printf "\n must end with .f, .f90, .F, or .c !"
415	printf "\n use \"..\" for more than one file and wildcards"
416	printf "\n -s LM compiles all locally modified files"
417	printf "\n -S config file interpreted by shellscript ---"
418	printf "\n -t allowed cpu-time in seconds (batch) 0"
419	printf "\n -T tasks per node depending on -h"
420	printf "\n -u username on remote machine \"\" "
421	printf "\n -v no prompt for confirmation ---"
422	printf "\n -w maximum parallel io streams as given by -X"
423	printf "\n -x tracing of mrun for debug purposes ---"
424	printf "\n -X # of processors (on parallel machines) 1"
425	printf "\n -y add appendix \"_O\" to all local output"
426	printf "\n files (ocean precursor runs followed by"
427	printf "\n coupled atmosphere-ocean runs) ---"
428	printf "\n -Y run coupled model, \"#1 #2\" with"
429	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
430	printf "\n -z disable a priori parameter file check ---"
431	printf "\n -Z skip combine_plot_fields at the end of "
432	printf "\n the simulation ---"
433	printf "\n "
434	printf "\n Possible values of positional parameter <modus>:"
435	printf "\n \"?\" - this outline \n\n") \| more
436	exit
437	elif [[ "$1" != "" ]]
438	then
439	printf "\n +++ positional parameter $1 unknown \n"
440	locat=parameter; exit
441	fi
442
443
444
445	# KURZE STARTMELDUNG
446	printf "\n*** $version "
447	printf "\n will be executed. Please wait ..."
448
449
450
451	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
452	if [[ ! -f $config_file ]]
453	then
454	printf "\n\n +++ configuration file: "
455	printf "\n $config_file"
456	printf "\n does not exist"
457	locat=connect; exit
458	fi
459
460
461	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
462	line=""
463	grep "%host_identifier" $config_file > tmp_mrun
464	while read line
465	do
466	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
467	then
468	HOSTNAME=`echo $line \| cut -d" " -s -f2`
469	host_identifier=`echo $line \| cut -d" " -s -f3`
470	if [[ $localhost_realname = $HOSTNAME ]]
471	then
472	localhost=$host_identifier
473	break
474	fi
475	fi
476	done < tmp_mrun
477
478	if [[ "$localhost" = "" ]]
479	then
480	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
481	printf "\n for local host \"$localhost_realname\"."
482	printf "\n Please add line"
483	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
484	printf "\n to the configuration file."
485	locat=localhost; exit
486	fi
487
488
489	# HOSTSPEZIFISCHE VARIABLEN SETZEN
490	case $localhost_realname in
491	(r1\|r2\|h01\|b01) archive_system=tivoli;;
492	(cs*) archive_system=ut;;
493	(fimm.bccs.uib.no) fimm=true;;
494	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
495	(scirocco) scirocco=true;;
496	esac
497
498
499
500	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
501	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
502	[[ "$afname" = "" ]] && afname=$fname
503
504
505	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
506	if [[ "$run_mode" != "" ]]
507	then
508	input_list="$input_list $run_mode"
509	output_list="$output_list $run_mode"
510	fi
511
512
513	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
514	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
515	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
516	# STARTET)
517	if [[ "$fromhost" = "" ]]
518	then
519	fromhost=$localhost
520	fi
521
522
523	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
524	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
525	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
526	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
527	if [[ -n $host && "$host" != $localhost ]]
528	then
529	do_batch=true
530	do_remote=true
531	case $host in
532	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
533	(*) printf "\n"
534	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
535	printf "\n is not available"
536	locat=nqs; (( iec = 0 )); exit;;
537	esac
538	else
539	host=$localhost
540	fi
541
542
543	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
544	if [[ -n $additional_conditions ]]
545	then
546	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
547	cond1=`echo $additional_conditions \| cut -d" " -f1`
548	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
549	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
550	if [[ -n $dummy ]]
551	then
552	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
553	locat=options; exit
554	fi
555	block=_$cond1
556	[[ -n $cond2 ]] && block=${block}_$cond2
557	fi
558
559
560	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
561	if [[ $run_coupled_model = true ]]
562	then
563
564	if [[ -n $coupled_dist ]]
565	then
566
567	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
568	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
569
570	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
571	then
572
573	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
574	printf "\n PEs (total) : $numprocs"
575	printf "\n PEs (atmosphere): $numprocs_atmos"
576	printf "\n PEs (ocean) : $numprocs_ocean"
577	locat=coupling; exit
578
579	fi
580
581	else
582
583	(( numprocs_ocean = $numprocs / 2 ))
584	(( numprocs_atmos = $numprocs / 2 ))
585
586	fi
587	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
588
589	# GET coupled_mode FROM THE CONFIG FILE
590	line=""
591	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
592	while read line
593	do
594	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
595	then
596	coupled_mode="mpi2"
597	fi
598	done < tmp_mrun
599
600	fi
601
602
603	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
604	# ARCHIVIERUNG FEHLGESCHLAGEN IST
605	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
606	then
607	if [[ $ignore_archive_error = false ]]
608	then
609	printf "\n +++ data archiving of previous run failed"
610	printf "\n see directory \~/job_queue on remote machine"
611	locat=archive; exit
612	else
613	printf "\n +++ warning: data archiving in a previous run failed"
614	printf "\n MRUN continues, trying to get backup copy"
615	fi
616	fi
617
618
619	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
620	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
621	mrun_memory=$memory
622	mrun_group_number=$group_number
623	mrun_cpumax=$cpumax
624	mrun_numprocs=$numprocs
625
626
627	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
628	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
629	if [[ "$read_from_config" = false ]]
630	then
631
632	[[ $silent = false ]] && printf "\n Reading the configuration file... "
633	while read zeile
634	do
635	[[ $silent = false ]] && printf "."
636
637
638	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
639	# ERSETZEN
640	eval zeile=\"$zeile\"
641
642
643	# INTERPRETATION DER ZEILE
644	if [[ "$(echo $zeile)" = "" ]]
645	then
646	# LEERZEILE, KEINE AKTION
647	continue
648
649	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
650	then
651
652	# ZEILE IST KOMMENTARZEILE
653	true
654
655	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
656	then
657
658	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
659	zeile=$(echo $zeile \| cut -c2-)
660	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
661	var=`echo $zeile \| cut -d" " -f1`
662	value=`echo $zeile \| cut -d" " -s -f2`
663	for_host=`echo $zeile \| cut -d" " -s -f3`
664	for_cond1=`echo $zeile \| cut -d" " -s -f4`
665	for_cond2=`echo $zeile \| cut -d" " -s -f5`
666
667	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
668	then
669
670	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
671	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
672	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
673
674
675	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
676	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
677	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
678	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
679	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
680	# KONFIGURATIONSDATEI
681	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
682	then
683	eval $var=\$value
684
685	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
686	if [[ $do_trace = true ]]
687	then
688	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
689	fi
690	fi
691
692	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
693	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
694	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
695	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
696	if [[ $var = host ]]
697	then
698	if [[ -n $host && "$host" != $localhost ]]
699	then
700	do_batch=true
701	do_remote=true
702	case $host in
703	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
704	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
705	printf "\n is not available"
706	locat=nqs; exit;;
707	esac
708	else
709	host=$localhost
710	fi
711	fi
712
713	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
714	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
715	# DEN PROGRAMMEN BENOETIGT WERDEN
716	export $var
717	fi
718
719
720
721
722	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
723	then
724
725	# ZEILE DEFINIERT ERROR-KOMMANDO
726	(( iec = iec + 1 ))
727	zeile=$(echo $zeile \| cut -c4-)
728	err_command[$iec]="$zeile"
729
730	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
731	then
732
733	# ZEILE DEFINIERT INPUT-KOMMANDO
734	(( iic = iic + 1 ))
735	zeile=$(echo $zeile \| cut -c4-)
736	in_command[$iic]="$zeile"
737
738	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
739	then
740
741	# ZEILE DEFINIERT OUTPUT-KOMMANDO
742	(( ioc = ioc + 1 ))
743	zeile=$(echo $zeile \| cut -c4-)
744	out_command[$ioc]="$zeile"
745
746	else
747
748	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
749	# s2a: in/out - Feld
750	# s2b: loc - Feld (optional)
751	# s2c: tr/ar - Feld (optional)
752	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
753	s1=`echo $zeile \| cut -d" " -f1`
754	s2=`echo $zeile \| cut -d" " -s -f2`
755	s2a=$(echo $s2 \| cut -d":" -f1)
756	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
757	then
758	s2b=""
759	s2c=""
760	else
761	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
762	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
763	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
764	fi
765	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
766	s3=`echo $zeile \| cut -d" " -f3`
767	s4=`echo $zeile \| cut -d" " -s -f4`
768	s5=`echo $zeile \| cut -d" " -s -f5`
769	s6=`echo $zeile \| cut -d" " -s -f6`
770
771
772	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
773	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
774	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
775	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
776	# HANDEN SEIN MUSS (D.H. s2b = loc)
777	IFSALT="$IFS"; IFS="$IFS:"
778	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
779	then
780	found=false
781	for actual in $input_list
782	do
783	for formal in $s3
784	do
785	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
786	done
787	done
788	if [[ $found = true ]]
789	then
790	(( iin = iin + 1 ))
791	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
792	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
793	extin[$iin]=$s6
794	fi
795	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
796	then
797	found=false
798	for actual in $output_list
799	do
800	for formal in $s3
801	do
802	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
803	done
804	done
805	if [[ $found = true ]]
806	then
807	(( iout = iout + 1 ))
808	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
809	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
810	fi
811	elif [[ "$s2a" != in && "$s2a" != out ]]
812	then
813	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
814	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
815	locat=connect; exit
816	fi
817	IFS="$IFSALT"
818	fi
819	done < $config_file
820
821	else
822
823
824	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
825	[[ $silent = false ]] && printf "..."
826	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
827	export interpreted_config_file=.icf.$RANDOM
828
829
830
831	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
832	# VERFUEGUNG STELLEN
833	cat > .mrun_environment << %%END%%
834	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
835	config_file = '$config_file', do_remote = '$do_remote',
836	do_trace = '$do_trace', host = '$host',
837	input_list = '$input_list', icf = '$interpreted_config_file',
838	localhost = '$localhost', output_list = '$output_list' /
839
840	%%END%%
841
842	if [[ $localhost_realname = "sx-fep" ]]
843	then
844	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
845	else
846
847	if [[ "$host" != $localhost ]]
848	then
849
850	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
851	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
852	if [[ $? != 0 ]]
853	then
854	printf "\n\n +++ no interpret_config found"
855	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
856	locat=interpret_config; exit
857	fi
858	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
859	$interpret_config_executable
860
861	else
862
863	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
864	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
865	then
866	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
867	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
868	locat=interpret_config; exit
869	else
870	interpret_config${block}.x
871	fi
872
873	fi
874	fi
875	rm .mrun_environment
876
877
878	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
879	chmod u+x $interpreted_config_file
880	export PATH=$PATH:.
881	. $interpreted_config_file
882	rm $interpreted_config_file
883
884	fi
885
886
887	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
888	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
889	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
890	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
891	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
892	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
893	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
894
895
896	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
897	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
898	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
899	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
900	if [[ "$SOURCES_COMPLETE" = "" ]]
901	then
902
903	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
904	# VEREINBART WURDE
905	source_path=""
906	line=""
907	grep "%source_path" $config_file > tmp_mrun
908	while read line
909	do
910	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
911	then
912	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
913	then
914	global_source_path=`echo $line \| cut -d" " -f2`
915	fi
916	fi
917	done < tmp_mrun
918
919	line=""
920	found=false
921	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
922	while read line
923	do
924	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
925	then
926	if [[ $found = true ]]
927	then
928	printf "\n\n +++ more than one source path found in configuration file"
929	printf "\n for local host \"$localhost\" "
930	locat=source_path; exit
931	fi
932	source_path=`echo $line \| cut -d" " -f2`
933	found=true
934	fi
935	done < tmp_mrun
936	rm tmp_mrun
937
938	if [[ "$source_path" = "" ]]
939	then
940	if [[ "$global_source_path" != "" ]]
941	then
942	source_path=$global_source_path
943	else
944	printf "\n\n +++ no source path found in configuration file"
945	printf "\n for local host \"$localhost\" "
946	locat=source_path; exit
947	fi
948	fi
949	eval source_path=$source_path
950
951	if [[ ! -d $source_path ]]
952	then
953	printf "\n\n +++ source path \"$source_path\" on local host"
954	printf "\n \"$localhost\" does not exist"
955	locat=source_path; exit
956	fi
957
958	fi
959
960
961	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
962	# DURCH OPTION -G MITGETEILT)
963	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
964	then
965	global_revision=`svnversion $source_path 2>/dev/null`
966	global_revision="Rev: $global_revision"
967	fi
968
969
970	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
971	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
972	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
973	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
974	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
975	if [[ -n $host && "$host" != $localhost ]]
976	then
977	do_batch=true
978	do_remote=true
979	case $host in
980	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
981	(*) printf "\n"
982	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
983	printf "\n is not available"
984	locat=nqs; (( iec = 0 )); exit;;
985	esac
986	else
987	host=$localhost
988	fi
989
990
991	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
992	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
993	then
994
995	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
996	if [[ ! -n $numprocs ]]
997	then
998	printf "\n"
999	printf "\n +++ option \"-K parallel\" requires additional specification"
1000	printf "\n of the number of processors to be used by"
1001	printf "\n mrun-option \"-X\" or by environment-variable"
1002	printf "\n \"numprocs\" in the configuration file"
1003	locat=numprocs; (( iec = 0 )); exit
1004	fi
1005
1006	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1007	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1008	# GESAMTPROZESSORANZAHL IST
1009	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1010	then
1011	printf "\n"
1012	printf "\n +++ option \"-T\" (tasks per node) is missing"
1013	printf "\n set -T option or define tasks_per_node in the config file"
1014	locat=tasks_per_node; (( iec = 0 )); exit
1015	fi
1016	if [[ $host != lcflow && $host != lcxt5m ]]
1017	then
1018	(( ival = $tasks_per_node ))
1019	(( pes = numprocs ))
1020	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1021	# then
1022	# (( pes = pes - 1 ))
1023	# fi
1024	(( ii = pes / ival ))
1025	if (( pes - ii * ival > 0 ))
1026	then
1027	printf "\n"
1028	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1029	printf "\n divisor of the total number of processors (option \"-X\")"
1030	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1031	locat=tasks_per_node; (( iec = 0 )); exit
1032	fi
1033	fi
1034
1035
1036	# IBMY HAT NUR EINEN KNOTEN
1037	if [[ $host = ibmy ]]
1038	then
1039	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1040	then
1041	printf "\n"
1042	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1043	printf "\n total number of processors (option \"-X\")"
1044	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1045	locat=tasks_per_node; (( iec = 0 )); exit
1046	fi
1047	fi
1048
1049
1050	# SETTINGS FOR SUBJOB-COMMAND
1051	TOPT="-T $tasks_per_node"
1052	OOPT="-O $threads_per_task"
1053
1054	# GESAMTZAHL DER KNOTEN BESTIMMEN
1055	if [[ "$tasks_per_node" != "" ]]
1056	then
1057	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1058	fi
1059
1060	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1061	# SETZEN
1062	if [[ $node_usage = default ]]
1063	then
1064	if [[ $host = ibms ]]
1065	then
1066	node_usage=shared
1067	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1068	then
1069	node_usage=singlejob
1070	else
1071	node_usage=not_shared
1072	fi
1073	fi
1074
1075	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1076	then
1077	printf "\n"
1078	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1079	printf "\n \"shared\" or \"not_shared\""
1080	locat=tasks_per_node; (( iec = 0 )); exit
1081	fi
1082
1083	fi
1084
1085	# PRUEFEN, OB HOSTFILE EXISTIERT
1086	if [[ -n $hostfile ]]
1087	then
1088	if [[ ! -f $hostfile ]]
1089	then
1090	printf "\n"
1091	printf "\n +++ hostfile \"$hostfile\" does not exist"
1092	locat=hostfile; exit
1093	fi
1094	fi
1095
1096	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1097	if [[ $host = ibmy && $do_remote = false ]]
1098	then
1099	if [[ ! -f $HOME/.rhosts ]]
1100	then
1101	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1102	printf "\n\n *** file:"
1103	printf "\n $HOME/.rhosts"
1104	printf "\n was created\n"
1105	fi
1106	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1107	then
1108	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1109	printf "\n\n *** file:"
1110	printf "\n $HOME/.rhosts"
1111	printf "\n was extended by the name of the current host\n"
1112	fi
1113	fi
1114
1115
1116	# Set default value for the maximum number of parallel io streams
1117	if [[ "$maximum_parallel_io_streams" = "" ]]
1118	then
1119	maximum_parallel_io_streams=$numprocs
1120	fi
1121
1122
1123	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1124	if [[ "$scp_port" != "" ]]
1125	then
1126	PORTOPT="-P $scp_port"
1127	SSH_PORTOPT="-p $scp_port"
1128	fi
1129
1130
1131	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1132	if [[ $queue = none ]]
1133	then
1134	case $host in
1135	(ibmh) queue=no_class;;
1136	(ibmkisti) queue=class.32plus;;
1137	(ibmy) queue=parallel;;
1138	(lckiaps) queue=normal;;
1139	(lckyoto) queue=ph;;
1140	(lckyuh) queue=fx-single;;
1141	(lckyut) queue=cx-single;;
1142	(lcsgib) queue=testq;;
1143	(lcsgih) queue=testq;;
1144	(lctit) queue=S;;
1145	(nech) queue=none;;
1146	(necriam) queue=SP;;
1147	(unics) queue=unics;;
1148	esac
1149	fi
1150
1151
1152	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1153	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1154	# ERMITTELN
1155	(( i = 0 ))
1156	while (( i < iin ))
1157	do
1158	(( i = i + 1 ))
1159	(( maxcycle = 0 ))
1160
1161	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1162	if [[ "${actionin[$i]}" = di ]]
1163	then
1164	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1165	# REM-MASCHINE AUSWERTEN
1166	eval filename=${pathin[$i]}/${endin[$i]}
1167	else
1168	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1169	# REM-MASCHINE AUSWERTEN
1170	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1171	fi
1172	eval pathname=${pathin[$i]}
1173
1174	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1175	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1176	then
1177	filename_input=$filename
1178	fi
1179
1180	# PRUEFEN AUF VORHANDENSEIN
1181	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1182	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1183	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1184	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1185	then
1186	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1187	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1188	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1189	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1190	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1191	if [[ "${transin[$i]}" != "locopt" ]]
1192	then
1193	printf "\n\n +++ INPUT-file: "
1194	if [[ "${extin[$i]}" = "" ]]
1195	then
1196	printf "\n $filename"
1197	else
1198	printf "\n $filename.${extin[$i]}"
1199	fi
1200	printf "\n does not exist\n"
1201	locat=input; exit
1202	else
1203	transin[$i]="unavailable"
1204	fi
1205	else
1206
1207	# ZYKLUSNUMMER FESTSTELLEN
1208	ls -1 -d $filename > filelist 2>/dev/null
1209	ls -1 -d $filename.* >> filelist 2>/dev/null
1210	while read zeile
1211	do
1212	cycle=$(echo $zeile \| cut -f2 -d".")
1213	if [[ "$cycle" = "$zeile" ]]
1214	then
1215	(( icycle = 0 ))
1216	elif [[ "$cycle" = "${extin[$i]}" ]]
1217	then
1218	(( icycle = 0 ))
1219	else
1220	(( icycle = $cycle ))
1221	fi
1222	if (( icycle > maxcycle ))
1223	then
1224	(( maxcycle = icycle ))
1225	file_to_be_used=$zeile
1226	fi
1227	done <filelist
1228	rm filelist
1229
1230	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1231	if (( maxcycle > 0 ))
1232	then
1233	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1234	then
1235	filename=${filename}.$maxcycle.${extin[$i]}
1236	else
1237	filename=${filename}.$maxcycle
1238	fi
1239	else
1240	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1241	then
1242	filename=${filename}.${extin[$i]}
1243	fi
1244	fi
1245
1246	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1247	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1248	absnamein[$i]=$filename
1249	if (( maxcycle > 0 ))
1250	then
1251	if [[ "${actionin[$i]}" = di ]]
1252	then
1253	frelin[$i]=${endin[$i]}.$maxcycle
1254	else
1255	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1256	fi
1257	else
1258	if [[ "${actionin[$i]}" = di ]]
1259	then
1260	frelin[$i]=${endin[$i]}
1261	else
1262	frelin[$i]=${afname}${endin[$i]}
1263	fi
1264	fi
1265
1266	fi
1267	done
1268
1269	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1270	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1271	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1272	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1273	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1274	(( i = 0 ))
1275	while (( i < iout ))
1276	do
1277	(( i = i + 1 ))
1278	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1279	then
1280	if [[ "${actionout[$i]}" = tr ]]
1281	then
1282	actionout[$i]=""
1283	elif [[ "${actionout[$i]}" = trpe ]]
1284	then
1285	actionout[$i]=pe
1286	elif [[ "${actionout[$i]}" = tra ]]
1287	then
1288	actionout[$i]=a
1289	fi
1290	(( maxcycle = 0 ))
1291	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1292	eval catalogname=${pathout[$i]}
1293	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1294	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1295	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1296	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1297	then
1298
1299	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1300	if cat /dev/null > $filename
1301	then
1302	rm $filename
1303	else
1304
1305	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1306	if [[ ! -d $catalogname ]]
1307	then
1308	if mkdir -p $catalogname
1309	then
1310	printf "\n\n *** directory:"
1311	printf "\n $catalogname"
1312	printf "\n was created\n"
1313	else
1314	printf "\n\n +++ OUTPUT-file:"
1315	printf "\n $filename"
1316	printf "\n cannot be created, because directory does not exist"
1317	printf "\n and cannot be created either"
1318	printf "\n"
1319	locat=output ; exit
1320	fi 2>/dev/null
1321	else
1322	printf "\n\n +++ OUTPUT-file:"
1323	printf "\n $filename"
1324	printf "\n cannot be created, although directory exists"
1325	printf "\n"
1326	locat=output ; exit
1327	fi
1328	fi 2>/dev/null
1329	else
1330
1331	# ZYKLUSNUMMER FESTSTELLEN
1332	ls -1 -d $filename > filelist 2>/dev/null
1333	ls -1 -d $filename.* >> filelist 2>/dev/null
1334	while read zeile
1335	do
1336	cycle=$(echo $zeile \| cut -f2 -d".")
1337	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1338	then
1339	(( icycle = 1 ))
1340	else
1341	(( icycle = $cycle + 1 ))
1342	fi
1343	if (( icycle > maxcycle ))
1344	then
1345	(( maxcycle = icycle ))
1346	fi
1347	done <filelist
1348	rm filelist
1349	fi
1350
1351	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1352	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1353	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1354	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1355	if [[ "${actionout[$i]}" != a ]]
1356	then
1357	if (( maxcycle > 0 ))
1358	then
1359	filename=${filename}.$maxcycle
1360	if cat /dev/null > $filename
1361	then
1362	rm $filename
1363	else
1364	printf "\n +++ OUTPUT-file:"
1365	printf "\n $filename"
1366	printf "\n cannot be created"
1367	locat=output ; exit
1368	fi
1369	fi
1370	else
1371	(( maxcycle = maxcycle - 1 ))
1372	if (( maxcycle > 0 ))
1373	then
1374	filename=${filename}.$maxcycle
1375	fi
1376	fi
1377
1378	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1379	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1380	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1381	pathout[$i]=$filename
1382	if (( maxcycle > 0 ))
1383	then
1384	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1385	else
1386	frelout[$i]=${fname}${endout[$i]}
1387	fi
1388
1389	fi
1390	done
1391
1392
1393	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1394	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1395	then
1396	if [[ "$dvr_inc" = "" ]]
1397	then
1398	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1399	printf "\n This is required for the dvrp_graphics package.\n"
1400	locat=dvr; exit
1401	fi
1402	if [[ "$dvr_lib" = "" ]]
1403	then
1404	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1405	printf "\n This is required for the dvrp_graphics package.\n"
1406	locat=dvr; exit
1407	fi
1408	fi
1409
1410
1411	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1412	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1413	# UEBERSETZT ZU WERDEN)
1414	if [[ "$mainprog" = "" && "$executable" = "" ]]
1415	then
1416	printf "\n +++ neither main program nor executable defined"
1417	locat=source; exit
1418	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1419	then
1420	printf "\n +++ main program as well as executable defined"
1421	locat=source; exit
1422	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1423	then
1424	do_compile=false
1425	fi
1426
1427
1428	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1429	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1430	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1431	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1432	then
1433	rm -rf SOURCES_FOR_RUN_$fname
1434	mkdir SOURCES_FOR_RUN_$fname
1435	fi
1436
1437
1438	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1439	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1440	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1441	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1442	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1443	then
1444
1445	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1446
1447	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1448	then
1449
1450	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1451	source_list=""
1452	cd $source_path
1453
1454
1455	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1456	if [[ ! -d .svn ]]
1457	then
1458	printf "\n\n +++ source directory"
1459	printf "\n \"$source_path\" "
1460	printf "\n is not under control of \"subversion\"."
1461	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1462	fi
1463
1464
1465	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1466	Filenames=""
1467	svn status > tmp_mrun
1468	while read line
1469	do
1470	firstc=`echo $line \| cut -c1`
1471	if [[ $firstc = M \|\| $firstc = "?" ]]
1472	then
1473	Name=`echo "$line" \| cut -c8-`
1474	extension=`echo $Name \| cut -d. -f2`
1475	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1476	then
1477	Filenames="$Filenames "$Name
1478	fi
1479	fi
1480	done < tmp_mrun
1481
1482
1483	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1484	for dateiname in $Filenames
1485	do
1486	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1487	source_list=$source_list"$dateiname "
1488	done
1489
1490	cd - > /dev/null
1491
1492
1493	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1494	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1495	# VORHANDEN
1496	elif [[ "$source_list" != "" && $restart_run != true ]]
1497	then
1498
1499	cd $source_path
1500
1501	for filename in $source_list
1502	do
1503
1504	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1505	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1506	then
1507	printf "\n +++ source code file: $filename"
1508	printf "\n must not contain (\"/\") "
1509	locat=source; exit
1510	fi
1511
1512	if [[ ! -f $filename ]]
1513	then
1514	printf "\n +++ source code file: $filename"
1515	printf "\n does not exist"
1516	locat=source; exit
1517	else
1518	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1519	fi
1520
1521	done
1522
1523	cd - > /dev/null
1524
1525	fi
1526
1527
1528	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1529	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1530	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1531	if [[ $restart_run != true ]]
1532	then
1533
1534	if [[ ! -f "$source_path/$mainprog" ]]
1535	then
1536	printf "\n\n +++ main program: $mainprog"
1537	printf "\n does not exist in source directory"
1538	printf "\n \"$source_path\"\n"
1539	locat=source; exit
1540	else
1541	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1542	then
1543	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1544	source_list=${mainprog}" $source_list"
1545	fi
1546	fi
1547	fi
1548
1549
1550	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1551	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1552	if [[ "$restart_run" != true ]]
1553	then
1554	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1555	if [[ ! -f $makefile ]]
1556	then
1557	printf "\n +++ file \"$makefile\" does not exist"
1558	locat=make; exit
1559	else
1560	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1561	fi
1562	fi
1563
1564
1565	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1566	if [[ $restart_run != true && "$add_source_path" != "" ]]
1567	then
1568
1569	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1570	if [[ ! -d $add_source_path ]]
1571	then
1572	printf "\n\n +++ WARNING: additional source code directory"
1573	printf "\n \"$add_source_path\" "
1574	printf "\n does not exist or is not a directory."
1575	printf "\n No source code will be used from this directory!\n"
1576	add_source_path=""
1577	if [[ $silent == false ]]
1578	then
1579	sleep 3
1580	fi
1581	else
1582
1583	cd $add_source_path
1584	found=false
1585
1586	Names=$(ls -1 *.f90 2>&1)
1587	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1588	Names=$(ls -1 *.F90 2>&1)
1589	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1590	Names=$(ls -1 *.F 2>&1)
1591	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1592	Names=$(ls -1 *.f 2>&1)
1593	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1594	Names=$(ls -1 *.c 2>&1)
1595	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1596
1597	cd - > /dev/null
1598	cd SOURCES_FOR_RUN_$fname
1599
1600	# COPY MAKEFILE IF EXISTING
1601	if [[ -f $add_source_path/Makefile ]]
1602	then
1603	printf "\n\n *** user Makefile from directory"
1604	printf "\n \"$add_source_path\" is used \n"
1605	if [[ $silent == false ]]
1606	then
1607	sleep 1
1608	fi
1609	cp $add_source_path/Makefile .
1610	fi
1611
1612	for dateiname in $AddFilenames
1613	do
1614	if [[ -f $dateiname ]]
1615	then
1616	printf "\n +++ source code file \"$dateiname\" found in additional"
1617	printf "\n source code directory \"$add_source_path\" "
1618	printf "\n but was also given with option \"-s\" which means that it should be taken"
1619	printf "\n from directory \"$source_path\"."
1620	locat=source; exit
1621	fi
1622
1623	cp $add_source_path/$dateiname .
1624	source_list="$source_list $dateiname"
1625
1626	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1627	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1628	then
1629	printf "\n\n +++ user file \"$dateiname\" "
1630	printf "\n is not listed in Makefile \n"
1631	locat=source; exit
1632	else
1633
1634	# Default User-Interface von der Liste entfernen, falls Datei
1635	# ein User-Interface enthaelt
1636	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1637	# then
1638	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1639	# then
1640	# rm -rf user_interface.f90
1641	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1642	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1643	# printf "\n since a user-interface is found in file"
1644	# printf "\n \"$add_source_path/$dateiname\" \n"
1645	# sleep 3
1646	# else
1647	if [[ $found = false ]]
1648	then
1649	found=true
1650	printf "\n\n *** following user file(s) added to the"
1651	printf " files to be translated:\n "
1652	fi
1653	printf "$dateiname "
1654	if [[ $silent == false ]]
1655	then
1656	sleep 0.5
1657	fi
1658
1659	fi
1660	done
1661	[[ $found = true ]] && printf "\n"
1662	cd - > /dev/null
1663	fi
1664	fi
1665
1666
1667	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1668	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1669	if [[ $restart_run != true && -n $package_list ]]
1670	then
1671
1672	cd $source_path
1673
1674	for package in $package_list
1675	do
1676
1677	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1678
1679	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1680	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1681	# LIEFERT
1682	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1683
1684
1685	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1686	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1687	for source_list_name in $package_source_list
1688	do
1689	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1690	then
1691
1692	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1693	ending=`echo $source_list_name \| cut -f2 -d.`
1694	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1695	then
1696	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1697	source_list="$source_list $source_list_name"
1698	fi
1699	fi
1700	done
1701	done
1702
1703	cd - > /dev/null
1704	fi
1705
1706
1707	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1708	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1709	# if [[ "$restart_run" != true ]]
1710	# then
1711	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1712	# if [[ ! -f $makefile ]]
1713	# then
1714	# printf "\n +++ file \"$makefile\" does not exist"
1715	# locat=make; exit
1716	# else
1717	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1718	# fi
1719	# fi
1720
1721	fi # do_compile=true
1722
1723
1724	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1725	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1726	if [[ $do_compile = true ]]
1727	then
1728
1729	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1730	# ZUSAMMENSETZEN
1731	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1732	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1733	then
1734	cpp_options="${cpp_options},-D__ibm=__ibm"
1735	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1736	then
1737	cpp_options="$cpp_options -D__nec"
1738	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1739	then
1740	cpp_options="$cpp_options -D__lc"
1741	else
1742	cpp_options="$cpp_options -D__$localhost"
1743	fi
1744
1745	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1746	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1747	then
1748	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1749	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1750	else
1751	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1752	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1753	fi
1754
1755	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1756	if [[ -n $package_list ]]
1757	then
1758	for package in $package_list
1759	do
1760	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1761	then
1762	if [[ $package != "dvrp_graphics+1PE" ]]
1763	then
1764	cpp_options="${cpp_options},-D__$package=__$package"
1765	else
1766	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1767	export use_seperate_pe_for_dvrp_output=true
1768	fi
1769	else
1770	if [[ $package != "dvrp_graphics+1PE" ]]
1771	then
1772	cpp_options="$cpp_options -D__$package"
1773	else
1774	cpp_options="$cpp_options -D__dvrp_graphics"
1775	export use_seperate_pe_for_dvrp_output=true
1776	fi
1777	fi
1778	done
1779	fi
1780
1781	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1782	if [[ -n $cpp_opts ]]
1783	then
1784	for popts in $cpp_opts
1785	do
1786	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1787	then
1788	cpp_options="${cpp_options},-D__$popts=__$popts"
1789	else
1790	cpp_options="$cpp_options -D__$popts"
1791	fi
1792	done
1793	fi
1794
1795	else
1796
1797
1798	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1799	if [[ $do_remote = false ]]
1800	then
1801	if [[ ! -f $executable ]]
1802	then
1803	printf "\n +++ executable file: $executable"
1804	printf "\n does not exist"
1805	locat=executable; exit
1806	fi
1807	fi
1808	fi
1809
1810
1811	# JOBMODUS FESTSTELLEN
1812	if [[ "$ENVIRONMENT" = BATCH ]]
1813	then
1814	jobmo=BATCH
1815	else
1816	jobmo=INTERACTIVE
1817	fi
1818
1819
1820	# no interactive runs on lctit
1821	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1822	then
1823	printf "\n +++ no interactive runs allowed on host \"$host\" "
1824	printf "\n please submit batch job using mrun option \"-b\" \n"
1825	locat=normal; exit
1826	fi
1827
1828
1829	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1830	# DURCH BENUTZER ANDERWEITIG VEREINBART
1831	if [[ "$compiler_name" = "" ]]
1832	then
1833
1834	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1835	locat=compiler_name; exit
1836
1837	fi
1838
1839
1840	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1841	[[ $localhost = necriam ]] && compiler_name=mpif90
1842
1843
1844
1845	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1846	kennung=$RANDOM
1847	if [[ "$tmp_user_catalog" = "" ]]
1848	then
1849	if [[ $localhost = ibmh ]]
1850	then
1851	tmp_user_catalog=$SCRATCH
1852	elif [[ $localhost = nech ]]
1853	then
1854	tmp_user_catalog=$WRKSHR
1855	else
1856	tmp_user_catalog=/tmp
1857	fi
1858	fi
1859	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1860
1861
1862	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1863	# BESTIMMEN
1864	if [[ "$tmp_data_catalog" = "" ]]
1865	then
1866	if [[ $localhost = nech ]]
1867	then
1868	tmp_data_catalog=$WRKSHR/mrun_restart_data
1869	else
1870	tmp_data_catalog=/tmp/mrun_restart_data
1871	fi
1872	fi
1873
1874
1875	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1876	# ERSETZEN
1877	if [[ $do_remote = false && $do_compile = true ]]
1878	then
1879	eval fopts=\"$fopts\"
1880	eval lopts=\"$lopts\"
1881	fi
1882
1883
1884
1885	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1886	fopts="$fopts $netcdf_inc $dvr_inc"
1887	lopts="$lopts $netcdf_lib $dvr_lib"
1888	ROPTS="$ropts"
1889	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1890	# then
1891	XOPT="-X $numprocs"
1892	# fi
1893
1894
1895
1896	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1897	# GRAMM BENOETIGT
1898	done=false
1899	while [[ $done = false ]]
1900	do
1901	cputime=$cpumax
1902	if (( $cputime == 0 ))
1903	then
1904	if [[ $do_batch = true ]]
1905	then
1906	printf "\n +++ cpu-time is undefined"
1907	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1908	printf "\n >>> "
1909	read cputime 1>/dev/null 2>&1
1910	else
1911	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1912	fi
1913	else
1914	done=true
1915	fi
1916	cpumax=$cputime
1917	done
1918
1919	(( minuten = cputime / 60 ))
1920	(( sekunden = cputime - minuten * 60 ))
1921
1922
1923	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1924	if [[ $do_batch = true ]]
1925	then
1926	done=false
1927	while [[ $done = false ]]
1928	do
1929	if (( memory == 0 ))
1930	then
1931	printf "\n +++ memory demand is undefined"
1932	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1933	printf "\n >>> "
1934	read memory 1>/dev/null 2>&1
1935	else
1936	done=true
1937	fi
1938	done
1939	fi
1940
1941
1942	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1943	if [[ $do_remote = true && -z $remote_username ]]
1944	then
1945	while [[ -z $remote_username ]]
1946	do
1947	printf "\n +++ username on remote host \"$host\" is undefined"
1948	printf "\n >>> Please type username:"
1949	printf "\n >>> "
1950	read remote_username
1951	done
1952	mc="$mc -u$remote_username"
1953	fi
1954
1955	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1956	if [[ "$login_init_cmd" != "" ]]
1957	then
1958	export init_cmds="${login_init_cmd};"
1959	fi
1960
1961
1962	# set module load command and export for subjob
1963	if [[ "$modules" != "" ]]
1964	then
1965	if [[ $host = lctit ]]
1966	then
1967	export module_calls=". $modules"
1968	else
1969	export module_calls="module load ${modules};"
1970	fi
1971	fi
1972
1973	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1974	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1975	then
1976	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1977	then
1978	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1979	fi
1980	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1981	# then
1982	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1983	# echo "*** module_calls = $module_calls"
1984	# fi
1985	fi
1986
1987
1988	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1989	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1990	then
1991	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1992	then
1993	mpilib=mpt
1994	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1995	then
1996	mpilib=mvapich
1997	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1998	then
1999	mpilib=impi
2000	fi
2001	fi
2002
2003
2004
2005	###########################################################################
2006	# HEADER-AUSGABE
2007	###########################################################################
2008
2009
2010	calltime=$(date)
2011	printf "\n"
2012	# [[ $silent = false ]] && clear
2013	printf "#------------------------------------------------------------------------# \n"
2014	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2015	printf "\| \| \n"
2016	spalte1="called on:"; spalte2=$localhost_realname
2017	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2018	if [[ $local_compile = false ]]
2019	then
2020	if [[ $do_remote = true ]]
2021	then
2022	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2023	else
2024	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2025	fi
2026	else
2027	spalte1="compiling test only!"; spalte2=""
2028	fi
2029	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2030	if [[ -n $numprocs ]]
2031	then
2032	if [[ $run_coupled_model = false ]]
2033	then
2034	spalte1="number of PEs:"; spalte2=$numprocs
2035	else
2036	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2037	fi
2038	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2039	fi
2040	if [[ -n $tasks_per_node ]]
2041	then
2042	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2043	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2044	fi
2045	if [[ $maximum_parallel_io_streams != $numprocs ]]
2046	then
2047	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2048	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2049	fi
2050	if [[ $use_openmp = true ]]
2051	then
2052	spalte1="threads per task:"; spalte2="$threads_per_task"
2053	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2054	fi
2055	printf "\| \| \n"
2056	if [[ $do_compile = true ]]
2057	then
2058	if [[ "$mopts" != "" ]]
2059	then
2060	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2061	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2062	zeile=$(echo "$mopts" \| cut -c46-)
2063	while [[ "$zeile" != "" ]]
2064	do
2065	spalte1=""
2066	spalte2=$(echo "$zeile" \| cut -c-45)
2067	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2068	zeile=$(echo "$zeile" \| cut -c46-)
2069	done
2070	fi
2071
2072	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2073	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2074	zeile=$(echo "$cpp_options" \| cut -c46-)
2075	while [[ "$zeile" != "" ]]
2076	do
2077	spalte1=""
2078	spalte2=$(echo "$zeile" \| cut -c-45)
2079	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2080	zeile=$(echo "$zeile" \| cut -c46-)
2081	done
2082
2083	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2084	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2085	zeile=$(echo "$fopts" \| cut -c46-)
2086	while [[ "$zeile" != "" ]]
2087	do
2088	spalte1=""
2089	spalte2=$(echo "$zeile" \| cut -c-45)
2090	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2091	zeile=$(echo "$zeile" \| cut -c46-)
2092	done
2093
2094	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2095	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2096	zeile=$(echo "$lopts" \| cut -c46-)
2097	while [[ "$zeile" != "" ]]
2098	do
2099	spalte1=""
2100	spalte2=$(echo "$zeile" \| cut -c-45)
2101	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2102	zeile=$(echo "$zeile" \| cut -c46-)
2103	done
2104
2105	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2106	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2107	zeile=$(echo "$modules" \| cut -c46-)
2108	while [[ "$zeile" != "" ]]
2109	do
2110	spalte1=""
2111	spalte2=$(echo "$zeile" \| cut -c-45)
2112	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2113	zeile=$(echo "$zeile" \| cut -c46-)
2114	done
2115
2116	spalte1="main program:"; spalte2=$mainprog
2117	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2118	else
2119	spalte1=executable:; spalte2=$executable
2120	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2121	fi
2122	printf "\| \| \n"
2123	spalte1="base name of files:"; spalte2=$fname
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125	if [[ $fname != $afname ]]
2126	then
2127	spalte1="base name of input files:"; spalte2=$afname
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	fi
2130	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2133	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2134
2135	if [[ "$ocean_file_appendix" = true ]]
2136	then
2137	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2138	fi
2139
2140	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2141	then
2142	spalte1="memory demand / PE":; spalte2="$memory MB"
2143	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2144	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2145	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2146	fi
2147
2148	if [[ $do_compile = true ]]
2149	then
2150	printf "\| \| \n"
2151	printf "\| Files to be compiled: \| \n"
2152	zeile=$source_list
2153	while [[ "$zeile" != "" ]]
2154	do
2155	linestart=$(echo $zeile \| cut -c-70)
2156	printf "\| %-70s \| \n" "$linestart"
2157	zeile=$(echo "$zeile" \| cut -c71-)
2158	done
2159	fi
2160	printf "#------------------------------------------------------------------------#"
2161
2162
2163
2164	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2165	if [[ $do_trace = true ]]
2166	then
2167	(( i = 0 ))
2168	while (( i < iin ))
2169	do
2170	(( i = i + 1 ))
2171	if (( i == 1 ))
2172	then
2173	printf "\n\n >>> INPUT-file assignments:\n"
2174	fi
2175	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2176	done
2177	(( i = 0 ))
2178	while (( i < iout ))
2179	do
2180	(( i = i + 1 ))
2181	if (( i == 1 ))
2182	then
2183	printf "\n\n >>> OUTPUT-file assignments:\n"
2184	fi
2185	printf "\n ${localout[$i]} : ${pathout[$i]}"
2186	done
2187	(( i = 0 ))
2188	while (( i < iic ))
2189	do
2190	(( i = i + 1 ))
2191	if (( i == 1 ))
2192	then
2193	printf "\n\n >>> INPUT-commands:\n"
2194	fi
2195	printf "\n ${in_command[$i]}"
2196	done
2197	(( i = 0 ))
2198	while (( i < ioc ))
2199	do
2200	(( i = i + 1 ))
2201	if (( i == 1 ))
2202	then
2203	printf "\n\n >>> OUTPUT-commands:\n"
2204	fi
2205	printf "\n ${out_command[$i]}"
2206	done
2207	fi
2208
2209
2210	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2211	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2212	then
2213	antwort=dummy
2214	printf "\n\n"
2215	printf " >>> everything o.k. (y/n) ? "
2216	while read antwort
2217	do
2218	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2219	then
2220	printf " >>> everything o.k. (y/n) ? "
2221	else
2222	break
2223	fi
2224	done
2225	if [[ $antwort = n \|\| $antwort = N ]]
2226	then
2227	locat=user_abort; (( iec = 0 )); exit
2228	fi
2229	if [[ $do_batch = true ]]
2230	then
2231	printf " >>> batch-job will be created and submitted"
2232	else
2233	if [[ $local_compile = false ]]
2234	then
2235	printf " >>> MRUN will now continue to execute on this machine"
2236	else
2237	printf " >>> a test compilation will now be carried out on this machine"
2238	fi
2239	fi
2240	fi
2241
2242
2243	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2244	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2245	check_depository="${working_directory}/trunk/UTIL"
2246	check_sources="${working_directory}/tmp_check_namelist_files"
2247	skip_check=false
2248
2249	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2250	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2251	then
2252	skip_check=true
2253	reason="run on remote host or parameter file check has not been compiled."
2254	fi
2255	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2256	then
2257	skip_check=true
2258	reason="parameter file check has not been compiled."
2259	fi
2260
2261	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2262	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2263	then
2264	skip_check=true
2265	reason="serial run."
2266	fi
2267
2268	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2269	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2270	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2271	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2272	if [[ $check_namelist_files == false ]]
2273	then
2274	skip_check=true
2275	reason="-z option set."
2276	fi
2277
2278	if [[ $fromhost != $localhost ]]
2279	then
2280	skip_check=true
2281	reason="submitting host is local host."
2282	fi
2283
2284	if [[ $run_coupled_model == true ]]
2285	then
2286	skip_check=true
2287	reason="coupled run."
2288	fi
2289
2290	if [[ $restart_run == true ]]
2291	then
2292	skip_check=true
2293	reason="restart run."
2294	fi
2295
2296	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2297	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2298	last_char=`echo $filename_input \| cut -c $last_char`
2299	if [[ "$last_char" == "f" ]]
2300	then
2301	skip_check=true
2302	reason="restart run."
2303	fi
2304
2305	if [[ $skip_check == false ]]
2306	then
2307	tmp_check=${working_directory}/tmp_check
2308
2309	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2310	# NOT NECESSARILY REQUIRED
2311	line=""
2312	found=false
2313	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2314	while read line1
2315	do
2316	line="$line1"
2317	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2318	then
2319	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2320	found=true
2321	fi
2322	done < $tmp_check
2323
2324	if [[ $found = false ]]
2325	then
2326	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2327	fi
2328
2329	rm -rf ${working_directory}/tmp_check
2330
2331	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2332	for item in $input_list
2333	do
2334	if [[ "$item" == "restart" ]]
2335	then
2336	check_restart=1
2337	else
2338	check_restart=0
2339	fi
2340	done
2341
2342	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2343	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2344	then
2345	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2346	locat=check_namelist; exit
2347	fi
2348
2349	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2350	if [[ $check_restart == 1 ]]
2351	then
2352
2353	filenamef="${filename_input}f"
2354	if [[ ! -f $filenamef ]]
2355	then
2356	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2357	check_restart=0
2358	answer=dummy
2359	printf "\n\n"
2360
2361	if [[ $silent == false ]]
2362	then
2363	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2364	do
2365	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2366	read answer
2367	done
2368	if [[ $answer = a \|\| $answer = A ]]
2369	then
2370	printf "\n +++ Aborting...."
2371	locat=normal; exit
2372	fi
2373	fi
2374	else
2375	check_restart=1
2376	fi
2377	fi
2378
2379	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2380	mkdir $check_sources
2381	cd $check_sources
2382
2383
2384	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2385	if [[ -d $add_source_path ]]
2386	then
2387	printf "\n\n *** copying files from $check_depository"
2388	cp $check_depository/check_namelist_files.tar ./
2389
2390	printf "\n\n *** untar of makefile and source files in $check_sources"
2391	tar -xf check_namelist_files.tar > /dev/null 2>&1
2392
2393	printf "\n\n *** adding user code."
2394	cp $add_source_path/* ./
2395	touch check_namelist_files.f90
2396
2397	# GET COMPILER OPTIONS AND PERFORM MAKE
2398	printf "\n\n *** compiling code if necessary...\n"
2399
2400	# workaround for batch jobs on local machine (lcxe6)
2401	if [[ $do_batch == true && $do_remote == false ]]
2402	then
2403	eval $init_cmds
2404	fi
2405
2406	# GET CHECK OPTIONS
2407	line=""
2408	found=false
2409
2410	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2411
2412	while read line1
2413	do
2414
2415	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2416	then
2417	line="$line1"
2418	fi
2419
2420	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2421	then
2422	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2423	line="$line "
2424	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2425	found=true
2426	fi
2427
2428	done < $tmp_check
2429	copts_check="$copts_check -D__check -D__parallel"
2430
2431	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2432
2433	# GET MAKE OUTPUT
2434	if [[ $? != 0 ]]
2435	then
2436	printf "\n +++ error during make."
2437	answer=dummy
2438	printf "\n\n"
2439	if [[ $silent == false ]]
2440	then
2441	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2442	do
2443	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2444	read answer
2445	done
2446	if [[ $answer = a \|\| $answer = A ]]
2447	then
2448	printf "\n +++ Aborting..."
2449	rm -rf $check_sources
2450	locat=normal; exit
2451	else
2452	skip_check=true
2453	fi
2454	else
2455	skip_check=true
2456	fi
2457	fi
2458	else
2459	cp $PALM_BIN/check_namelist_files.x ./
2460	fi
2461
2462	cp $filename_input ./PARIN
2463	if [[ $check_restart == 1 ]]
2464	then
2465	cp $filenamef ./PARINF
2466	fi
2467
2468	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2469	then
2470	printf "\n *** adding topography data"
2471	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2472
2473	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2474	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2475	# WHICH REQUIRE SUFFICIENT MEMORY
2476	ulimit -s unlimited
2477	fi
2478
2479	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2480	cat > ENVPAR << %%END%%
2481	&envpar run_identifier = '$fname', host = '$host',
2482	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2483	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2484	maximum_cpu_time_allowed = ${cpumax}.,
2485	revision = '$global_revision',
2486	local_dvrserver_running = $local_dvrserver_running /
2487
2488	%%END%%
2489
2490	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2491	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2492	then
2493	printf "\n +++ WARNING: check_namelist_files.x not found."
2494	answer=dummy
2495	printf "\n\n"
2496
2497	if [[ $silent == false ]]
2498	then
2499	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2500	do
2501	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2502	read answer
2503	done
2504	if [[ $answer = a \|\| $answer = A ]]
2505	then
2506	printf "\n +++ Aborting..."
2507	rm -rf $check_sources
2508	locat=normal; exit
2509	else
2510	printf "\n *** skipping parameter file check."
2511	fi
2512	fi
2513
2514	elif [[ $skip_check == false ]]
2515	then
2516	# STARTING THE PARAMETER FILE CHECK
2517	printf "\n\n *** starting parameter file check..."
2518
2519	# CHECKING THE P3D FILE
2520	printf "\n\n (1) checking $filename_input"
2521	echo "$numprocs 0 0" > VARIN
2522	errors=`./check_namelist_files.x < VARIN 2>&1`
2523
2524	check_error=false
2525	if [[ "$errors" == "" ]]
2526	then
2527	printf " --> o.k."
2528	else
2529	printf " --> failed."
2530	check_error=true
2531	printf "\n\n $errors"
2532	fi
2533
2534	# CHECKING THE PD3F FILE IF NECESSARY
2535	if [[ $check_restart == 1 && $check_error == false ]]
2536	then
2537	printf "\n\n (2) checking $filenamef"
2538
2539	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2540	# IN &INIPAR LIST
2541	found=false
2542	cat PARINF \| while read line
2543	do
2544	line=$(echo $line\|sed 's/ //g')
2545	if [[ $line == "&inipar" ]]
2546	then
2547	start_search=true
2548	fi
2549
2550	if [[ $start_search == true ]]
2551	then
2552	if [[ $line == "initializing_actions='read_restart_data'" ]]
2553	then
2554	found=true
2555	break
2556	fi
2557	fi
2558
2559	if [[ $line == "/" ]]
2560	then
2561	start_search=false
2562	fi
2563
2564	done
2565
2566	if [[ $found = false ]]
2567	then
2568	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2569	printf "\n in &inipar list in $fname$p3df_suffix."
2570	rm -rf $check_sources
2571	locat=check_namelist; exit
2572	fi
2573
2574	# READ max_user_pr FROM FILES
2575	if [[ -f parin_for_check ]]
2576	then
2577	read max_pr_user < parin_for_check
2578	else
2579	max_user_pr=0
2580	fi
2581
2582	echo "$numprocs 1 $max_pr_user" > VARIN
2583	errors=`./check_namelist_files.x < VARIN 2>&1`
2584
2585	if [[ "$errors" == "" ]]
2586	then
2587	printf " --> o.k."
2588	else
2589	printf " --> failed."
2590	check_error=true
2591	printf "\n\n $errors"
2592	fi
2593	fi
2594
2595	# REPORT ERRORS AND CONTINUE/EXIT
2596	if [[ $check_error == true ]]
2597	then
2598	printf "\n +++ errors found in the parameter file!\n"
2599	answer=dummy
2600	printf "\n\n"
2601
2602	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2603	do
2604	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2605	read answer
2606	done
2607
2608	if [[ $answer = a \|\| $answer = A ]]
2609	then
2610	printf "\n +++ Aborting..."
2611	rm -rf $check_sources
2612	locat=normal; exit
2613	fi
2614	else
2615	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2616	fi
2617	rm -rf $check_sources
2618	fi
2619	else
2620	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2621	fi
2622
2623	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2624	rm -rf $check_sources
2625	cd $working_directory
2626
2627
2628	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2629	# CHENDE AKTIONEN DURCHGEFUEHRT
2630	if [[ $do_batch = false ]]
2631	then
2632
2633
2634	# TEMPORAEREN KATALOG ERZEUGEN
2635	mkdir -p $TEMPDIR
2636	chmod go+rx $TEMPDIR
2637	tmpcreate=true
2638
2639	# set striping on lustre file system
2640	# if [[ $localhost = lcsgih ]]
2641	# then
2642	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2643	# lfs getstripe $TEMPDIR
2644	# fi
2645
2646
2647	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2648	# TEMPORAERES VERZEICHNIS KOPIEREN
2649	if [[ $do_compile = true ]]
2650	then
2651
2652	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2653	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2654	if [[ $localhost = nech ]]
2655	then
2656	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2657	if mkdir -p $TEMPDIR_COMPILE
2658	then
2659	printf "\n *** \"$TEMPDIR_COMPILE\" "
2660	printf "\n is generated as temporary directory for cross compiling\n"
2661	else
2662	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2663	printf "\n needed for cross compilation failed"
2664	locat=compile
2665	exit
2666	fi
2667	else
2668	TEMPDIR_COMPILE=$TEMPDIR
2669	fi
2670
2671
2672	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2673	line=""
2674	grep "%depository_path" $config_file > tmp_mrun
2675	while read line
2676	do
2677	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2678	then
2679	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2680	then
2681	global_depository_path=`echo $line \| cut -d" " -s -f2`
2682	fi
2683	fi
2684	done < tmp_mrun
2685
2686	line=""
2687	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2688	while read line
2689	do
2690	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2691	then
2692	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2693	then
2694	local_depository_path=`echo $line \| cut -d" " -s -f2`
2695	fi
2696	fi
2697	done < tmp_mrun
2698
2699	if [[ "$local_depository_path" = "" ]]
2700	then
2701	if [[ "$global_depository_path" != "" ]]
2702	then
2703	local_depository_path=$global_depository_path
2704	else
2705	printf "\n\n +++ no depository path found in configuration file"
2706	printf "\n for local host \"$localhost\" "
2707	printf "\n please set \"\%depository_path\" in configuration file\n"
2708	locat=config_file; exit
2709	fi
2710	fi
2711	eval local_depository_path=$local_depository_path
2712	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2713	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2714
2715
2716	basename=`echo $mainprog \| cut -f1 -d"."`
2717	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2718	if [[ ! -f $make_depository ]]
2719	then
2720	printf "\n"
2721	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2722	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2723	else
2724	cp $make_depository $TEMPDIR_COMPILE
2725	cd $TEMPDIR_COMPILE
2726	tar -xf $make_depository > /dev/null 2>&1
2727	cd - > /dev/null
2728	fi
2729
2730	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2731
2732	else
2733
2734	cp $executable ${TEMPDIR}/a.out
2735
2736	fi
2737
2738
2739	# WECHSEL IN TEMPORAEREN KATALOG
2740	cd $TEMPDIR
2741	printf "\n *** changed to temporary directory: $TEMPDIR"
2742
2743
2744	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2745	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2746	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2747	# ERMITTELN
2748	(( i = 0 ))
2749	while (( i < iout ))
2750	do
2751	(( i = i + 1 ))
2752	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2753	then
2754	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2755	else
2756	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2757	fi
2758	done
2759
2760
2761	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2762	if [[ $do_compile = true ]]
2763	then
2764
2765
2766	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2767	printf "\n\n\n *** compilation starts \n$striche\n"
2768	printf " *** compilation with make using following options:\n"
2769	printf " make depository: $make_depository"
2770	if [[ "$mopts" != "" ]]
2771	then
2772	printf " make options: $mopts\n"
2773	fi
2774	printf " compilername: $compiler_name\n"
2775	printf " compiler options: $fopts\n"
2776	printf " preprocessor directives: $cpp_options \n"
2777	printf " linker options: $lopts \n"
2778	if [[ "$modules" != "" ]]
2779	then
2780	printf " modules to be load: $modules \n"
2781	fi
2782	printf " source code files: $source_list \n"
2783
2784	if [[ $localhost = nech ]]
2785	then
2786	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2787	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2788	cp $TEMPDIR_COMPILE/a.out .
2789	[[ $? != 0 ]] && compile_error=true
2790	rm -rf $TEMPDIR_COMPILE
2791	elif [[ $localhost = ibmh ]]
2792	then
2793	printf " compiler is called via ssh on \"plogin1\" \n"
2794	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2795	[[ ! -f a.out ]] && compile_error=true
2796	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2797	elif [[ $localhost = lcsgib ]]
2798	then
2799	printf " compiler is called via ssh on \"bicegate0\" \n"
2800	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2801	[[ ! -f a.out ]] && compile_error=true
2802	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2803	elif [[ $localhost = lcsgih ]]
2804	then
2805	printf " compiler is called via ssh on \"hicegate0\" \n"
2806	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2807	[[ ! -f a.out ]] && compile_error=true
2808	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2809	elif [[ $localhost = lcflow ]]
2810	then
2811	printf " compiler is called via ssh on \"flow\" \n"
2812	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2813	[[ ! -f a.out ]] && compile_error=true
2814	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2815	else
2816	[[ "$init_cmds" != "" ]] && eval $init_cmds
2817	[[ "$module_calls" != "" ]] && eval $module_calls
2818	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2819
2820	fi
2821
2822	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2823	then
2824	printf "\n +++ error occured while compiling or linking"
2825	locat=compile
2826
2827	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2828	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2829	# then
2830	exit
2831	# else
2832	# locat=normal
2833	# fi
2834	else
2835	printf "$striche\n *** compilation finished \n"
2836	fi
2837	fi
2838
2839
2840	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2841	if [[ $local_compile = true ]]
2842	then
2843	cd $HOME
2844	rm -rf $TEMPDIR
2845	locat=local_compile; exit
2846	fi
2847
2848
2849	# BEREITSTELLEN DER INPUT-DATEIEN
2850	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2851	(( i = 0 ))
2852	while (( i < iin ))
2853	do
2854	(( i = i + 1 ))
2855	if (( i == 1 ))
2856	then
2857	printf "\n\n *** providing INPUT-files:\n$striche"
2858	fi
2859
2860
2861	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2862	if [[ "${transin[$i]}" = unavailable ]]
2863	then
2864	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2865	then
2866	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2867	printf "\n is not available!"
2868	else
2869	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2870	printf "\n is not available!"
2871	fi
2872	continue
2873	fi
2874
2875	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2876	files_for_pes=false; datentyp=file
2877	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2878	then
2879	files_for_pes=true; datentyp=directory
2880	actionin[$i]=""
2881	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2882	then
2883	actionin[$i]=""
2884	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2885	then
2886	files_for_pes=true; datentyp=directory
2887	actionin[$i]="ar"
2888	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2889	then
2890	actionin[$i]="ar"
2891	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2892	then
2893	files_for_pes=true; datentyp=directory
2894	actionin[$i]="fl"
2895	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2896	then
2897	actionin[$i]="fl"
2898	fi
2899
2900	if [[ $files_for_pes = true ]]
2901	then
2902	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2903	else
2904	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2905	fi
2906
2907	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2908	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2909	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2910	# SERVER ZU HOLEN
2911	if [[ "${actionin[$i]}" = fl ]]
2912	then
2913	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2914	if [[ $files_for_pes = false ]]
2915	then
2916	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2917	then
2918	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2919	got_tmp[$i]=true
2920	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2921	then
2922	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2923	printf "\n *** trying to use backup copy in \"$WORK\" "
2924	cp $WORK/${frelin[$i]} ${localin[$i]}
2925	else
2926	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2927	printf "\n or \"$tmp_data_catalog\" does not exist!"
2928	printf "\n *** trying to get copy from archive"
2929	actionin[$i]=ar
2930	fi
2931	else
2932	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2933	then
2934	mkdir ${localin[$i]}
2935	cd $tmp_data_catalog/${frelin[$i]}
2936	for file in $(ls *)
2937	do
2938	ln $file $TEMPDIR/${localin[$i]}
2939	done
2940	cd $TEMPDIR
2941	got_tmp[$i]=true
2942	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2943	then
2944	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2945	printf "\n *** trying to use backup copy in \"$WORK\" "
2946	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2947	else
2948	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2949	printf "\n or \"$tmp_data_catalog\" does not exist!"
2950	printf "\n *** trying to get copy from archive"
2951	actionin[$i]=ar
2952	fi
2953	fi
2954	fi
2955
2956
2957	# DATEI LIEGT AUF ARCHIV-SERVER
2958	if [[ "${actionin[$i]}" = ar ]]
2959	then
2960
2961	if [[ $files_for_pes = false ]]
2962	then
2963	printf "\n file will be restored from archive-system ($archive_system)!"
2964	else
2965	printf "\n directory will be restored from archive-system ($archive_system)!"
2966	fi
2967
2968	file_restored=false
2969
2970	if [[ $archive_system = asterix ]]
2971	then
2972	do_stagein=true
2973	(( stagein_anz = 0 ))
2974	while [[ $do_stagein = true ]]
2975	do
2976	if [[ $files_for_pes = false ]]
2977	then
2978	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2979	else
2980	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2981	fi
2982	cat STAGEIN_OUTPUT
2983	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2984	then
2985	file_restored=true
2986	do_stagein=false
2987	else
2988	(( stagein_anz = stagein_anz + 1 ))
2989	if (( stagein_anz == 10 ))
2990	then
2991	printf "\n +++ stagein stoped after 10 tries"
2992	locat=stage
2993	exit
2994	fi
2995	printf "\n +++ restoring from archive failed, trying again:"
2996	sleep 900
2997	fi
2998	done
2999	elif [[ $archive_system = DMF ]]
3000	then
3001	if [[ $files_for_pes = false ]]
3002	then
3003	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3004	locat=DMF
3005	exit
3006	else
3007	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3008	cp -r $ARCHIVE/${frelin[$i]} $PWD
3009	file_restored=true
3010	fi
3011	elif [[ $archive_system = tivoli ]]
3012	then
3013	if [[ $files_for_pes = false ]]
3014	then
3015	if [[ $localhost = lcsgih ]]
3016	then
3017	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3018	else
3019	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3020	fi
3021	else
3022	(( inode = 0 ))
3023	while (( inode < nodes ))
3024	do
3025	if [[ $localhost = lcsgih ]]
3026	then
3027	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3028	else
3029	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3030	fi
3031	(( inode = inode + 1 ))
3032	done
3033	fi
3034	file_restored=true
3035	elif [[ $archive_system = ut ]]
3036	then
3037	if [[ $files_for_pes = false ]]
3038	then
3039	cp $UT/${frelin[$i]} .
3040	else
3041	(( inode = 0 ))
3042	while (( inode < nodes ))
3043	do
3044	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3045	(( inode = inode + 1 ))
3046	done
3047	fi
3048	file_restored=true
3049	else
3050	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3051	locat=rearchive
3052	exit
3053	fi
3054
3055	if [[ $file_restored = true ]]
3056	then
3057
3058	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3059	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3060	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3061	if [[ $files_for_pes = false ]]
3062	then
3063	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3064	else
3065	mkdir $tmp_data_catalog/${frelin[$i]}
3066	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3067	fi
3068	got_tmp[$i]=true
3069
3070	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3071	mv ${frelin[$i]} ${localin[$i]}
3072
3073	fi
3074	fi
3075
3076
3077	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3078	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3079	then
3080
3081	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3082	then
3083
3084	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3085	printf "\n file will be provided for $numprocs processors"
3086	mkdir ${localin[$i]}
3087	ival=$numprocs
3088	(( ii = 0 ))
3089	while (( ii <= ival-1 ))
3090	do
3091	if (( ii < 10 ))
3092	then
3093	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3094	elif (( ii < 100 ))
3095	then
3096	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3097	elif (( ii < 1000 ))
3098	then
3099	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3100	else
3101	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3102	fi
3103	(( ii = ii + 1 ))
3104	done
3105
3106	else
3107
3108	if [[ $files_for_pes = true ]]
3109	then
3110
3111	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3112	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3113	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3114	# PER MOVE UMBENANNT WERDEN
3115	printf "\n providing $numprocs files for the respective processors"
3116	mkdir ${localin[$i]}
3117	if [[ $link_local_input = true ]]
3118	then
3119	printf " using ln -f\n"
3120	cd ${absnamein[$i]}
3121	for file in $(ls *)
3122	do
3123	ln -f $file ${localin[$i]}
3124	done
3125	cd $TEMPDIR
3126	fi
3127	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3128	if [[ ! -f "${localin[$i]}/_0000" ]]
3129	then
3130	if [[ $link_local_input = true ]]
3131	then
3132	printf " ln failed for .../_0000, using cp...\n"
3133	fi
3134	cp -r ${absnamein[$i]}/* ${localin[$i]}
3135	fi
3136
3137	else
3138	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3139	if [[ $link_local_input = true ]]
3140	then
3141	printf " using ln -f\n"
3142	ln -f ${absnamein[$i]} ${localin[$i]}
3143	fi
3144	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3145	if [[ ! -f "${localin[$i]}" ]]
3146	then
3147	if [[ $link_local_input = true ]]
3148	then
3149	printf " ln failed, using cp...\n"
3150	fi
3151	cp ${absnamein[$i]} ${localin[$i]}
3152	fi
3153	fi
3154	fi
3155	fi
3156
3157	done
3158	if (( i != 0 ))
3159	then
3160	printf "\n$striche\n *** all INPUT-files provided \n"
3161	fi
3162
3163
3164	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3165	(( i = 0 ))
3166	while (( i < iic ))
3167	do
3168	(( i = i + 1 ))
3169	if (( i == 1 ))
3170	then
3171	printf "\n\n *** execution of INPUT-commands:\n$striche"
3172	fi
3173	printf "\n >>> ${in_command[$i]}"
3174	eval ${in_command[$i]}
3175	if (( i == iic ))
3176	then
3177	printf "\n$striche\n"
3178	fi
3179	done
3180
3181
3182	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3183	cpurest=${cpumax}.
3184
3185
3186	# START DVR STREAMING SERVER
3187	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3188	then
3189	if [[ "$dvr_server" != "" ]]
3190	then
3191
3192	printf "\n\n *** preparing the dvr streaming server configuration file"
3193
3194	# Check, if a dvr server is already running
3195	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3196	if [[ "$running_dvrserver_id" != "" ]]
3197	then
3198
3199	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3200	printf "\n This server is used instead starting a new one!"
3201	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3202
3203	else
3204
3205	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3206	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3207	then
3208	cp ${PALM_BIN}/.dvrserver.config .
3209
3210	# Entering the BASEDIR, UID and GID into this file
3211	user_id=`id -u`
3212	group_id=`id -g`
3213	# & is needed as seperator, because TEMPDIR contains /
3214	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3215	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3216	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3217	mv .dvrserver.3 .dvrserver.config
3218	rm .dvrserver.1 .dvrserver.2
3219
3220	# Start dvr server in background, get his id and print on terminal
3221	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3222	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3223	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3224	local_dvrserver_running=.TRUE.
3225	else
3226	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3227	printf "\n \"$PALM_BIN\" "
3228	locat=dvr
3229	exit
3230	fi
3231
3232	fi
3233
3234	else
3235	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3236	fi
3237	fi
3238
3239
3240	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3241	# LESEN VON PALM)
3242	cat > ENVPAR << %%END%%
3243	&envpar run_identifier = '$fname', host = '$localhost',
3244	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3245	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3246	maximum_cpu_time_allowed = ${cpumax}.,
3247	revision = '$global_revision',
3248	local_dvrserver_running = $local_dvrserver_running /
3249
3250	%%END%%
3251
3252
3253	# PROGRAMMSTART
3254	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3255	PATH=$PATH:$TEMPDIR
3256
3257	# MPI debug option (argument checking, slows down execution due to increased latency)
3258	if [[ "$mpi_debug" = true ]]
3259	then
3260	export MPI_CHECK_ARGS=1
3261	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3262	fi
3263
3264	if [[ "$totalview" = true ]]
3265	then
3266	printf "\n *** totalview debugger will be used"
3267	tv_opt="-tv"
3268	else
3269	tv_opt=""
3270	fi
3271
3272	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3273	then
3274	if [[ "$ENVIRONMENT" = BATCH ]]
3275	then
3276	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3277	then
3278	printf "\n +++ debug is allowed in interactive mode only"
3279	locat=debug
3280	exit
3281	fi
3282	fi
3283	if [[ $localhost = ibmh ]]
3284	then
3285
3286	# SETUP THE IBM MPI ENVIRONMENT
3287	export MP_SHARED_MEMORY=yes
3288	export AIXTHREADS_SCOPE=S
3289	export OMP_NUM_THREADS=$threads_per_task
3290	export AUTHSTATE=files
3291	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3292
3293	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3294	export MP_ADAPTER_USE=shared
3295	export MP_CPU_USE=multiple
3296	export MP_TIMEOUT=1200
3297
3298	unset MP_TASK_AFFINITY
3299
3300	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3301	#(( ii = 1 ))
3302	#while (( ii <= $numprocs ))
3303	#do
3304	# echo $localhost_realname >> hostfile
3305	# (( ii = ii + 1 ))
3306	#done
3307	#export MP_HOSTFILE=hostfile
3308
3309	if [[ "$LOADLBATCH" = yes ]]
3310	then
3311	totalview poe a.out $ROPTS
3312	else
3313	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3314	export TVDSVRLAUNCHCMD=ssh
3315	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3316	fi
3317	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3318	then
3319	# CURRENTLY NO DEBUGGER ON LCSGI
3320	if [[ $run_coupled_model = true ]]
3321	then
3322	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3323	locat=debug
3324	exit
3325	else
3326	echo "no_coupling" > runfile_atmos
3327	fi
3328	(( ii = $numprocs / $threads_per_task ))
3329	export OMP_NUM_THREADS=$threads_per_task
3330	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3331	if [[ $threads_per_task != 1 ]]
3332	then
3333	printf "\n threads per task: $threads_per_task"
3334	fi
3335	printf "\n\n"
3336	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3337	then
3338	# export MPI_LAUNCH_TIMEOUT=360
3339	if [[ "$totalview" = true ]]
3340	then
3341	printf "\n running totalview debugger"
3342	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3343	else
3344	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3345	fi
3346	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3347	then
3348	# ulimit -s 300000 # A too large stack size causes problems
3349	# export MV2_NUM_PORTS=2
3350	# export MV2_CPU_MAPPING=0:1:2:3
3351	if [[ "$totalview" = true ]]
3352	then
3353	printf "\n running totalview debugger"
3354	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3355	else
3356	mpiexec ./a.out $ROPTS < runfile_atmos
3357	fi
3358	fi
3359	else
3360	printf "\n +++ no debug available on \"$localhost\" "
3361	printf "\n or not implemented in mrun so far"
3362	locat=debug
3363	exit
3364	fi
3365
3366	# end debug mode
3367	else
3368
3369	# normal execution
3370	if [[ -n $numprocs ]]
3371	then
3372	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3373	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3374	then
3375	# SETUP THE IBM MPI ENVIRONMENT
3376	if [[ $host != ibmh && $host != ibmkisti ]]
3377	then
3378	export MP_SHARED_MEMORY=yes
3379	export AIXTHREAD_SCOPE=S
3380	export OMP_NUM_THREADS=$threads_per_task
3381	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3382	export AUTHSTATE=files
3383	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3384	# export MP_PRINTENV=yes
3385
3386	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3387	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3388	export MP_WAIT_MODE=poll
3389	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3390	fi
3391
3392	if [[ $host = ibmkisti ]]
3393	then
3394	export LANG=en_US
3395	export MP_SHARED_MEMORY=yes
3396	if [[ $threads_per_task = 1 ]]
3397	then
3398	export MP_SINGLE_THREAD=yes
3399	export MEMORY_AFFINITY=MCM
3400	else
3401	export OMP_NUM_THREADS=$threads_per_task
3402	fi
3403	fi
3404
3405	if [[ "$LOADLBATCH" = yes ]]
3406	then
3407	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3408	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3409	then
3410	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3411	else
3412	if [[ $run_coupled_model = false ]]
3413	then
3414	if [[ "$ocean_file_appendix" = true ]]
3415	then
3416	echo "precursor_ocean" > runfile_atmos
3417	else
3418	echo "precursor_atmos" > runfile_atmos
3419	fi
3420	else
3421	(( iia = $numprocs_atmos / $threads_per_task ))
3422	(( iio = $numprocs_ocean / $threads_per_task ))
3423	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3424	printf "\n using $coupled_mode coupling"
3425	printf "\n\n"
3426	echo "coupled_run $iia $iio" > runfile_atmos
3427	fi
3428	poe ./a.out $ROPTS < runfile_atmos
3429	fi
3430	else
3431	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3432	then
3433	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3434	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3435	then
3436	if [[ -f $hostfile ]]
3437	then
3438	cp $hostfile hostfile
3439	else
3440	(( ii = 1 ))
3441	while (( ii <= $numprocs ))
3442	do
3443	echo $localhost_realname >> hostfile
3444	(( ii = ii + 1 ))
3445	done
3446	fi
3447	export MP_HOSTFILE=hostfile
3448	if [[ $run_coupled_model = false ]]
3449	then
3450	if [[ "$ocean_file_appendix" = true ]]
3451	then
3452	echo "precursor_ocean" > runfile_atmos
3453	else
3454	echo "precursor_atmos" > runfile_atmos
3455	fi
3456	else
3457	(( iia = $numprocs_atmos / $threads_per_task ))
3458	(( iio = $numprocs_ocean / $threads_per_task ))
3459	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3460	printf "\n using $coupled_mode coupling"
3461	printf "\n\n"
3462	echo "coupled_run $iia $iio" > runfile_atmos
3463	fi
3464	if [[ $localhost = ibmy ]]
3465	then
3466	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3467	else
3468	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3469	fi
3470
3471	else
3472	if [[ "$host_file" = "" ]]
3473	then
3474	printf "\n +++ no hostfile given in configuration file"
3475	locat=config_file
3476	exit
3477	else
3478	eval host_file=$host_file
3479	fi
3480	export MP_HOSTFILE=$host_file
3481	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3482	fi
3483	fi
3484	elif [[ $host = nech \|\| $host = necriam ]]
3485	then
3486	(( ii = nodes ))
3487	if [[ $ii = 1 ]]
3488	then
3489	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3490	export MPIPROGINF=YES
3491	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3492	echo "*** execution on single node with mpirun"
3493	mpirun -np $numprocs ./a.out $ROPTS
3494	else
3495	(( i = 0 ))
3496	while (( i < ii ))
3497	do
3498	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3499	(( i = i + 1 ))
3500	done
3501
3502	echo "#!/bin/sh" > mpi_exec_shell
3503	echo " " >> mpi_exec_shell
3504	echo "set -u" >> mpi_exec_shell
3505	echo "F_ERRCNT=0" >> mpi_exec_shell
3506	echo "MPIPROGINV=YES" >> mpi_exec_shell
3507	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3508	echo "cpurest=$cpurest" >> mpi_exec_shell
3509	echo "fname=$fname" >> mpi_exec_shell
3510	echo "localhost=$localhost" >> mpi_exec_shell
3511	echo "return_addres=$return_addres" >> mpi_exec_shell
3512	echo "return_username=$return_username" >> mpi_exec_shell
3513	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3514	echo "write_binary=$write_binary" >> mpi_exec_shell
3515	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3516	echo " " >> mpi_exec_shell
3517	echo "export F_ERRCNT" >> mpi_exec_shell
3518	echo "export MPIPROGINV" >> mpi_exec_shell
3519	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3520	echo "export cpurest" >> mpi_exec_shell
3521	echo "export fname" >> mpi_exec_shell
3522	echo "export localhost" >> mpi_exec_shell
3523	echo "export return_addres" >> mpi_exec_shell
3524	echo "export return_username" >> mpi_exec_shell
3525	echo "export tasks_per_node" >> mpi_exec_shell
3526	echo "export write_binary" >> mpi_exec_shell
3527	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3528	echo " " >> mpi_exec_shell
3529	echo "exec ./a.out" >> mpi_exec_shell
3530
3531	chmod u+x mpi_exec_shell
3532	export MPIPROGINF=YES
3533	mpirun -f multinode_config &
3534	wait
3535
3536	fi
3537	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3538	then
3539
3540	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3541	# DOES NOT EXIST
3542	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3543	then
3544	if [[ -f $hostfile ]]
3545	then
3546	cp $hostfile hostfile
3547	(( ii = $numprocs / $threads_per_task ))
3548	else
3549	(( ii = 1 ))
3550	while (( ii <= $numprocs / $threads_per_task ))
3551	do
3552	echo $localhost_realname >> hostfile
3553	(( ii = ii + 1 ))
3554	done
3555	fi
3556	eval zeile=\"`head -n $ii hostfile`\"
3557	printf "\n *** running on: $zeile"
3558	fi
3559
3560	(( ii = $numprocs / $threads_per_task ))
3561	export OMP_NUM_THREADS=$threads_per_task
3562	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3563	if [[ $threads_per_task != 1 ]]
3564	then
3565	# increase stack size to unlimited, because large runs
3566	# may abort otherwise
3567	ulimit -Ss unlimited
3568	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3569	fi
3570	if [[ $run_coupled_model = false ]]
3571	then
3572	if [[ "$ocean_file_appendix" = true ]]
3573	then
3574	echo "precursor_ocean" > runfile_atmos
3575	else
3576	echo "precursor_atmos" > runfile_atmos
3577	fi
3578	printf "\n\n"
3579	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3580	then
3581	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3582	then
3583	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3584	# export MPI_DSM_DISTRIBUTE=1
3585	# MPI_DSM_CPULIST: pin MPI processes to cores
3586	if [[ $use_openmp = false ]]
3587	then
3588	if [[ "$sgi_feature" = ice2 ]]
3589	then
3590	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3591	else
3592	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3593	fi
3594	else
3595	unset MPI_DSM_CPULIST
3596	fi
3597	# MPI_IB_RAILS: use both IB rails on ICE2
3598	export MPI_BUFS_PER_HOST=512
3599	export MPI_IB_RAILS=2
3600	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3601	export MPI_CONNECTIONS_THRESHOLD=8192
3602	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3603	export MPI_TYPE_DEPTH=20
3604	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3605	export MPI_GROUP_MAX=64
3606	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3607	if [[ $use_openmp = true ]]
3608	then
3609	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3610	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3611	else
3612	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3613	fi
3614
3615	# next is test for openmp usage
3616	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3617	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3618	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3619	then
3620	export MV2_NUM_PORTS=2
3621	# The default setting of MV2_CPU_MAPPING gives best results
3622	# export MV2_ENABLE_AFFINITY=1
3623	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3624	# if [[ "$sgi_feature" = ice2 ]]
3625	# then
3626	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3627	# else
3628	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3629	# fi
3630	if [[ $use_openmp = true ]]
3631	then
3632	unset MV2_CPU_MAPPING
3633	export MV2_ENABLE_AFFINITY=0
3634	fi
3635	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3636	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3637	if [[ $use_openmp = true ]]
3638	then
3639	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3640	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3641	else
3642	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3643	fi
3644	elif [[ "$mpilib" = impi ]]
3645	then
3646	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3647	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3648	fi
3649	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3650	then
3651	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3652	elif [[ $host = lcflow ]]
3653	then
3654	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3655	elif [[ $host = lcsb ]]
3656	then
3657	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3658	elif [[ $host = lckiaps ]]
3659	then
3660	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3661	elif [[ $host = lckyu* ]]
3662	then
3663	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3664	else
3665	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3666	fi
3667	else
3668
3669	# currently there is no full MPI-2 support on ICE and XT4
3670	(( iia = $numprocs_atmos / $threads_per_task ))
3671	(( iio = $numprocs_ocean / $threads_per_task ))
3672	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3673	printf "\n using $coupled_mode coupling"
3674	printf "\n\n"
3675
3676	if [[ $coupled_mode = "mpi2" ]]
3677	then
3678	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3679	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3680	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3681	then
3682
3683	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3684	then
3685	# export MPI_LAUNCH_TIMEOUT=360
3686	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3687	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3688	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3689	then
3690	# ulimit -s 300000 # A too large stack size causes problems
3691	# export MV2_NUM_PORTS=2
3692	# export MV2_CPU_MAPPING=0:1:2:3
3693	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3694	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3695	fi
3696
3697	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3698	then
3699
3700	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3701	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3702
3703	else
3704	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3705	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3706	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3707	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3708	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3709	fi
3710	wait
3711
3712	else
3713
3714	echo "coupled_run $iia $iio" > runfile_atmos
3715	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3716	then
3717
3718	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3719	then
3720	# export MPI_LAUNCH_TIMEOUT=360
3721	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3722	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3723	then
3724	# ulimit -s 300000 # A too large stack size causes problems
3725	# export MV2_NUM_PORTS=2
3726	# export MV2_CPU_MAPPING=0:1:2:3
3727	mpiexec ./a.out $ROPTS < runfile_atmos
3728	fi
3729
3730	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3731	then
3732
3733	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3734
3735	elif [[ $host = lck \|\| $host = lckordi ]]
3736	then
3737	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3738	fi
3739	wait
3740	fi
3741
3742	fi
3743	elif [[ $host = lckyoto ]]
3744	then
3745	set -xv
3746	export P4_RSHCOMMAND=plesh
3747	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3748	if [[ "$ENVIRONMENT" = BATCH ]]
3749	then
3750	if [[ "$cond2" = fujitsu ]]
3751	then
3752	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3753	elif [[ "cond2" = pgi ]]
3754	then
3755	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3756	else
3757	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3758	fi
3759	else
3760	if [[ "$cond2" = "" ]]
3761	then
3762	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3763	else
3764	mpirun -np $numprocs ./a.out $ROPTS
3765	fi
3766	fi
3767	set +xv
3768	elif [[ $host = lctit ]]
3769	then
3770	export OMP_NUM_THREADS=$threads_per_task
3771	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3772	if [[ "$threads_per_task" != 1 ]]
3773	then
3774	export MV2_ENABLE_AFFINITY=0
3775	fi
3776	echo "----- PBS_NODEFILE content:"
3777	cat $PBS_NODEFILE
3778	echo "-----"
3779	(( ii = $numprocs / $threads_per_task ))
3780	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3781	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3782	else
3783	mpprun -n $numprocs a.out $ROPTS
3784	fi
3785	[[ $? != 0 ]] && execution_error=true
3786
3787
3788	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3789	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3790	then
3791	apprentice
3792	fi
3793	else
3794	a.out $ROPTS
3795	fi
3796	fi
3797	if [[ $? != 0 \|\| $execution_error = true ]]
3798	then
3799
3800	# ABBRUCH BEI LAUFZEITFEHLER
3801	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3802	printf "\n +++ runtime error occured"
3803	locat=execution
3804	exit
3805	else
3806	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3807	printf "\n$striche\n *** execution finished \n"
3808
3809	# Stop the dvr streaming server and process the dvr output in order
3810	# to create dvrs- and html-files containing all streams
3811	if [[ "$dvrserver_id" != "" ]]
3812	then
3813	kill $dvrserver_id
3814	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3815
3816	# If there is a directory, data have been output by the
3817	# streaming server. Otherwise, user has chosen dvrp_output=local
3818	if [[ -d DATA_DVR ]]
3819	then
3820
3821	# Add the current dvr configuration file to the dvr output
3822	# directory
3823	cp .dvrserver.config DATA_DVR
3824
3825	# Process the dvr output (option -s for also generating
3826	# sequence mode data)
3827	process_dvr_output -d DATA_DVR -f $fname -s
3828
3829	else
3830
3831	# Process the local output
3832	process_dvr_output -l -d DATA_DVR -f $fname
3833
3834	fi
3835
3836	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3837	then
3838
3839	# Process dvr output generated in local mode (dvrp_output=local)
3840	process_dvr_output -l -d DATA_DVR -f $fname
3841
3842	fi
3843	fi
3844
3845
3846
3847	# Call of combine_plot_fields in order to merge single files written
3848	# by each PE into one file.
3849	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3850	then
3851	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3852	printf "\n 2d- and/or 3d-data may be incomplete!"
3853	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3854	elif [[ "$combine_plot_fields" == true ]]
3855	then
3856	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3857	combine_plot_fields${block}.x
3858	else
3859	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3860	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3861	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3862	fi
3863
3864
3865
3866	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3867	(( i = 0 ))
3868	while (( i < ioc ))
3869	do
3870	(( i = i + 1 ))
3871	if (( i == 1 ))
3872	then
3873	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3874	fi
3875	printf "\n >>> ${out_command[$i]}"
3876	eval ${out_command[$i]}
3877	if (( i == ioc ))
3878	then
3879	printf "\n$striche\n"
3880	fi
3881	done
3882
3883
3884	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3885	if [[ $do_trace = true ]]
3886	then
3887	printf "\n\n"
3888	ls -al
3889	fi
3890
3891
3892
3893	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3894	(( i = 0 ))
3895	while (( i < iout ))
3896	do
3897	(( i = i + 1 ))
3898	if (( i == 1 ))
3899	then
3900	printf "\n\n *** saving OUTPUT-files:\n$striche"
3901	fi
3902
3903	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3904	files_for_pes=false; filetyp=file
3905	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3906	then
3907	files_for_pes=true; filetyp=directory
3908	actionout[$i]=""
3909	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3910	then
3911	actionout[$i]=""
3912	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3913	then
3914	files_for_pes=true; filetyp=directory
3915	actionout[$i]="ar"
3916	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3917	then
3918	actionout[$i]="ar"
3919	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3920	then
3921	files_for_pes=true; filetyp=directory
3922	actionout[$i]="fl"
3923	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3924	then
3925	actionout[$i]="fl"
3926	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3927	then
3928	files_for_pes=true; filetyp=directory
3929	actionout[$i]="tr"
3930	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3931	then
3932	actionout[$i]="tr"
3933	fi
3934
3935	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3936	then
3937	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3938	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3939	then
3940	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3941	else
3942
3943
3944	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3945	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3946	# REMOTE-RECHNUNGEN
3947	if [[ "${actionout[$i]}" = tr ]]
3948	then
3949	if [[ $localhost != $fromhost ]]
3950	then
3951	if [[ $files_for_pes = false ]]
3952	then
3953	cps=""
3954	cst=""
3955	else
3956	cps=-c
3957	cst="/"
3958	fi
3959	if [[ $localhost = nech ]]
3960	then
3961
3962	# TRANSFER IN EIGENSTAENDIGEM JOB
3963	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3964	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3965	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3966	if [[ $files_for_pes = false ]]
3967	then
3968	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3969	else
3970	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3971	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3972	fi
3973
3974	echo "set -x" > transfer_${localout[$i]}
3975	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3976
3977	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3978	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3979	printf "\n or higher cycle\n"
3980	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3981
3982	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3983
3984	if [[ $localhost = nech ]]
3985	then
3986	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3987	else
3988	if [[ "$LOGNAME" = b323013 ]]
3989	then
3990	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3991	else
3992	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3993	fi
3994	fi
3995
3996	else
3997
3998	# TRANSFER INNERHALB DIESES JOBS
3999	transfer_failed=false
4000	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4001	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4002	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4003	[[ $? != 0 ]] && transfer_failed=true
4004
4005	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4006	# LOKALER MASCHINE ANLEGEN
4007	if [[ $transfer_failed = true ]]
4008	then
4009	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4010	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4011
4012	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4013	# ANLEGEN.
4014	eval local_catalog=${pathout[$i]}
4015	if [[ ! -d $local_catalog ]]
4016	then
4017	printf " *** local directory does not exist. Trying to create:\n"
4018	printf " $local_catalog \n"
4019	mkdir -p $local_catalog
4020	fi
4021	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4022	transfer_problems=true
4023	fi
4024	fi
4025	else
4026
4027	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4028	actionout[$i]=""
4029	fi
4030	fi
4031
4032
4033	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4034	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4035	# REMOTE-RECHNUNGEN
4036	if [[ "${actionout[$i]}" = tra ]]
4037	then
4038	if [[ $localhost != $fromhost ]]
4039	then
4040	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4041	then
4042
4043	# TRANSFER IN EIGENSTAENDIGEM JOB
4044	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4045	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4046	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4047	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4048
4049	echo "set -x" > transfer_${localout[$i]}
4050	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4051
4052	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4053	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4054	printf "\n or higher cycle\n"
4055	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4056
4057	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4058
4059	if [[ $localhost = nech ]]
4060	then
4061	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4062	else
4063	if [[ $LOGNAME = b323013 ]]
4064	then
4065	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4066	else
4067	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4068	fi
4069	fi
4070
4071	else
4072
4073	# TRANSFER INNERHALB DIESES JOBS
4074	transfer_failed=false
4075	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4076	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4077	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4078	[[ $? != 0 ]] && transfer_failed=true
4079
4080	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4081	# LOKALER MASCHINE ANLEGEN
4082	if [[ $transfer_failed = true ]]
4083	then
4084	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4085	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4086
4087	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4088	# ANLEGEN
4089	eval local_catalog=${pathout[$i]}
4090	if [[ ! -d $local_catalog ]]
4091	then
4092	printf " *** local directory does not exist. Trying to create:\n"
4093	printf " $local_catalog \n"
4094	mkdir -p $local_catalog
4095	fi
4096
4097	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4098	transfer_problems=true
4099	fi
4100	fi
4101	else
4102
4103	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4104	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4105	actionout[$i]=a
4106	fi
4107	fi
4108
4109
4110	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4111	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4112	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4113	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4114	if [[ "${actionout[$i]}" = fl ]]
4115	then
4116	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4117	chmod g+rx $tmp_data_catalog
4118	if [[ $files_for_pes = false ]]
4119	then
4120	printf "\n >>> OUTPUT: ${localout[$i]} to"
4121	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4122	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4123	else
4124	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4125	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4126	mkdir $tmp_data_catalog/${frelout[$i]}
4127	cd ${localout[$i]}
4128	for file in $(ls *)
4129	do
4130	ln -f $file $tmp_data_catalog/${frelout[$i]}
4131	done
4132	cd $TEMPDIR
4133	fi
4134
4135
4136	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4137	if [[ $store_on_archive_system = true ]]
4138	then
4139
4140	if [[ $archive_system = asterix ]]
4141	then
4142	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4143	if [[ $files_for_pes = false ]]
4144	then
4145	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4146	else
4147	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4148	fi
4149	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4150	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4151	echo "then" >> archive_${frelout[$i]}
4152	echo " do_stageout=false" >> archive_${frelout[$i]}
4153	echo "else" >> archive_${frelout[$i]}
4154	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4155	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4156	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4157	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4158	if [[ $files_for_pes = false ]]
4159	then
4160	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4161	else
4162	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4163	fi
4164	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4165	echo "fi" >> archive_${frelout[$i]}
4166	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4167	elif [[ $archive_system = DMF ]]
4168	then
4169	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4170	if [[ $files_for_pes = false ]]
4171	then
4172	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4173	locat=DMF
4174	exit
4175	else
4176	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4177	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4178	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4179	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4180	fi
4181	elif [[ $archive_system = tivoli ]]
4182	then
4183	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4184	if [[ $files_for_pes = false ]]
4185	then
4186	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4187	echo "set -x" >> archive_${frelout[$i]}
4188	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4189	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4190	else
4191
4192	echo "set -x" >> archive_${frelout[$i]}
4193	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4194	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4195	cd $tmp_data_catalog
4196	all_files=`ls -1 ${frelout[$i]}/*`
4197	cd - > /dev/null
4198	(( inode = 0 ))
4199	(( tp1 = tasks_per_node + 1 ))
4200	while (( inode < nodes ))
4201	do
4202	# echo "*** all_files = \"$all_files\" "
4203	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4204	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4205	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4206	# echo "*** files = \"$files\" "
4207	# echo "*** all_files = \"$all_files\" "
4208	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4209	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4210	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4211	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4212	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4213	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4214	(( inode = inode + 1 ))
4215	done
4216	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4217	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4218	fi
4219	elif [[ $archive_system = ut ]]
4220	then
4221	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4222	if [[ $files_for_pes = false ]]
4223	then
4224	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4225	echo "set -x" >> archive_${frelout[$i]}
4226	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4227	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4228	else
4229
4230	echo "set -x" >> archive_${frelout[$i]}
4231	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4232	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4233	cd $tmp_data_catalog
4234	all_files=`ls -1 ${frelout[$i]}/*`
4235	cd - > /dev/null
4236	(( inode = 0 ))
4237	(( tp1 = tasks_per_node + 1 ))
4238	while (( inode < nodes ))
4239	do
4240	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4241	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4242	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4243	(( inode = inode + 1 ))
4244	done
4245	fi
4246	elif [[ $archive_system = none ]]
4247	then
4248	printf " +++ archiving on $localhost not available!\n"
4249	fi
4250
4251	if [[ $archive_system != none ]]
4252	then
4253	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4254	then
4255	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4256	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4257	elif [[ $localhost = nech ]]
4258	then
4259	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4260	fi
4261	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4262	fi
4263	else
4264	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4265	fi
4266
4267
4268	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4269	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4270	if [[ $files_for_pes = false ]]
4271	then
4272	cat /dev/null > ${pathout[$i]}
4273	else
4274	mkdir -p ${pathout[$i]}
4275	fi
4276
4277	fi
4278
4279
4280	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4281	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4282	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4283	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4284	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4285	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4286	if [[ "${actionout[$i]}" = ar ]]
4287	then
4288	if [[ $files_for_pes = false ]]
4289	then
4290	printf "\n >>> OUTPUT: ${localout[$i]} to"
4291	printf "\n ${pathout[$i]}"
4292	printf "\n File will be copied to archive-system ($archive_system) !\n"
4293	else
4294	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4295	printf "\n ${pathout[$i]}"
4296	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4297	fi
4298	mv ${localout[$i]} ${frelout[$i]}
4299
4300	file_saved=false
4301
4302	if [[ $archive_system = asterix ]]
4303	then
4304	do_stageout=true
4305	(( stageout_anz = 0 ))
4306	while [[ $do_stageout = true ]]
4307	do
4308	if [[ $files_for_pes = false ]]
4309	then
4310	stageout ${frelout[$i]} > STAGE_OUTPUT
4311	else
4312	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4313	fi
4314	cat STAGE_OUTPUT
4315	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4316	then
4317	file_saved=true
4318	do_stageout=false
4319	else
4320	if [[ $files_for_pes = false ]]
4321	then
4322	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4323	else
4324	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4325	fi
4326	(( stageout_anz = stageout_anz + 1 ))
4327	if (( stageout_anz == 10 ))
4328	then
4329	printf "\n +++ stoped after 10 unsuccessful tries!"
4330	archive_save=false
4331	do_stageout=false
4332	else
4333	printf "\n *** new try to store on archive after 15 min:"
4334	sleep 900
4335	fi
4336	fi
4337	done
4338	elif [[ $archive_system = DMF ]]
4339	then
4340	if [[ $files_for_pes = false ]]
4341	then
4342	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4343	locat=DMF
4344	exit
4345	else
4346	rm -rf $ARCHIVE/${frelout[$i]}
4347	cp -r ${frelout[$i]} $ARCHIVE
4348	fi
4349	file_saved=true
4350	elif [[ $archive_system = tivoli ]]
4351	then
4352	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4353	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4354	# GELEGT WERDEN
4355	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4356	chmod g+rx $tmp_data_catalog
4357	if [[ $files_for_pes = false ]]
4358	then
4359	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4360	else
4361	mkdir $tmp_data_catalog/${frelout[$i]}
4362	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4363	fi
4364
4365	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4366	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4367	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4368	if [[ $files_for_pes = false ]]
4369	then
4370	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4371	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4372	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4373	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4374	else
4375	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4376	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4377	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4378	fi
4379
4380	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4381	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4382	file_saved=true
4383
4384	elif [[ $archive_system = ut ]]
4385	then
4386	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4387	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4388	# GELEGT WERDEN
4389	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4390	chmod g+rx $tmp_data_catalog
4391	if [[ $files_for_pes = false ]]
4392	then
4393	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4394	else
4395	mkdir $tmp_data_catalog/${frelout[$i]}
4396	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4397	fi
4398
4399	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4400	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4401	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4402	if [[ $files_for_pes = false ]]
4403	then
4404	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4405	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4406	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4407	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4408	else
4409	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4410	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4411	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4412	fi
4413
4414	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4415	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4416	file_saved=true
4417
4418	else
4419	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4420	archive_save=false
4421	fi
4422	if [[ $file_saved = true ]]
4423	then
4424	if [[ $files_for_pes = false ]]
4425	then
4426	cat /dev/null > ${pathout[$i]}
4427	else
4428	mkdir -p ${pathout[$i]}
4429	fi
4430	fi
4431	fi
4432
4433	# APPEND AUF LOKALER MASCHINE
4434	if [[ "${actionout[$i]}" = "a" ]]
4435	then
4436	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4437	then
4438	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4439	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4440	else
4441	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4442	cat ${localout[$i]} >> ${pathout[$i]}
4443	fi
4444	fi
4445
4446	# KOPIEREN AUF LOKALER MASCHINE
4447	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4448	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4449	then
4450
4451	# KOPIEREN AUF EINPROZESSORMASCHINE
4452	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4453	then
4454	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4455	if [[ $link_local_output = true ]]
4456	then
4457	printf " using ln -f\n"
4458	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4459	fi
4460	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4461	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4462	then
4463	if [[ $link_local_output = true ]]
4464	then
4465	printf " ln failed, using cp...\n"
4466	fi
4467	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4468	fi
4469	else
4470	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4471	if [[ $link_local_output = true ]]
4472	then
4473	printf " using ln -f\n"
4474	ln -f ${localout[$i]} ${pathout[$i]}
4475	fi
4476	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4477	if [[ ! -f "${pathout[$i]}" ]]
4478	then
4479	if [[ $link_local_output = true ]]
4480	then
4481	printf " ln failed, using cp...\n"
4482	fi
4483	cp ${localout[$i]} ${pathout[$i]}
4484	fi
4485	fi
4486
4487	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4488	then
4489
4490	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4491	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4492	# WIRD DANN KOPIERT
4493	# PER MOVE UMBENANNT WERDEN
4494	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4495	if [[ $link_local_output = true ]]
4496	then
4497	printf " using ln -f\n"
4498	mkdir ${pathout[$i]}
4499	cd ${localout[$i]}
4500	for file in $(ls *)
4501	do
4502	ln -f $file ${pathout[$i]}
4503	done
4504	cd $TEMPDIR
4505	fi
4506	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4507	if [[ ! -f "${pathout[$i]}/_0000" ]]
4508	then
4509	if [[ $link_local_output = true ]]
4510	then
4511	printf " ln failed for .../_0000, using cp...\n"
4512	fi
4513	cp -r ${localout[$i]} ${pathout[$i]}
4514	fi
4515
4516	fi
4517	fi
4518	done
4519	if (( i != 0 ))
4520	then
4521	if [[ $transfer_problems = true ]]
4522	then
4523	printf "\n$striche\n *** OUTPUT-files saved"
4524	printf "\n +++ WARNING: some data transfers failed! \n"
4525	else
4526	printf "\n$striche\n *** all OUTPUT-files saved \n"
4527	fi
4528	fi
4529
4530
4531	# EVENTUELL FOLGEJOB STARTEN
4532	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4533	if [[ -f CONTINUE_RUN ]]
4534	then
4535
4536	if [[ $archive_save = true ]]
4537	then
4538
4539	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4540	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4541	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4542	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4543	# HANDEN
4544	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4545	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4546	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4547	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4548	then
4549	mc=`echo $mc \| sed 's/#/f/g'`
4550	fi
4551
4552
4553	# JOB STARTEN
4554	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4555	echo " $mc"
4556	printf "\n$striche\n"
4557	if [[ $localhost != $fromhost ]]
4558	then
4559
4560	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4561	then
4562	echo "*** ssh will be used to initiate restart-runs!"
4563	echo " return_addres=\"$return_addres\" "
4564	echo " return_username=\"$return_username\" "
4565	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4566	then
4567	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4568	else
4569	if [[ $localhost = ibmkisti ]]
4570	then
4571	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4572	else
4573	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4574	fi
4575	fi
4576	else
4577	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4578	locat=restart; exit
4579	fi
4580
4581	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4582	# DER AKTUELLE JOB ENDET
4583	if [[ $queue = special1q ]]
4584	then
4585	sleep 120
4586	else
4587	sleep 30
4588	fi
4589
4590	else
4591
4592	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4593	# RUFEN WERDEN, AUSSER AUF lcfimm
4594	cd $LOCAL_PWD
4595	if [[ $localhost = lcfimm ]]
4596	then
4597	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4598	elif [[ $localhost = lckyuh ]]
4599	then
4600	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4601	printf "\n please restart job manually using command:\n"
4602	printf "\n \"$mc\" "
4603	else
4604	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4605	fi
4606	cd - > /dev/null
4607	fi
4608	if [[ $localhost = lckyuh ]]
4609	then
4610	printf "\n$striche\n *** restart-run to be initiated manually\n"
4611	else
4612	printf "\n$striche\n *** restart-run initiated \n"
4613	fi
4614
4615
4616	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4617	# GEHOLT WORDEN SIND, LOESCHEN
4618	(( i = 0 ))
4619	while (( i < iin ))
4620	do
4621	(( i = i + 1 ))
4622	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4623	then
4624	rm -r $tmp_data_catalog/${frelin[$i]}
4625	fi
4626	done
4627
4628	else
4629
4630	printf "\n +++ no restart-run possible, since errors occured"
4631	printf "\n during the archive process"
4632	fi
4633
4634	fi
4635
4636
4637
4638	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4639	if [[ "$email_notification" != "none" ]]
4640	then
4641
4642	if [[ $localhost != $fromhost ]]
4643	then
4644	if [[ -f CONTINUE_RUN ]]
4645	then
4646	echo "PALM restart run necessary" > email_text
4647	echo "description header of actual run:" >> email_text
4648	cat CONTINUE_RUN >> email_text
4649	echo "mrun-command to restart:" >> email_text
4650	echo "$mc" >> email_text
4651	else
4652	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4653	fi
4654	mail $email_notification < email_text
4655	printf "\n *** email notification sent to \"$email_notification\" "
4656	fi
4657	fi
4658
4659
4660
4661	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4662	cd $HOME
4663	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4664
4665	else
4666
4667
4668	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4669	# CHENDE AKTIONEN DURCHGEFUEHRT
4670
4671	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4672	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4673	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4674	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4675	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4676	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4677	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4678	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4679	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4680	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4681	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4682	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4683	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4684	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4685	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4686	if [[ $use_openmp = true ]]
4687	then
4688	mrun_com=${mrun_com}" -O $threads_per_task"
4689	fi
4690	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4691	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4692	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4693	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4694	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4695	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4696	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4697	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4698	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4699	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4700	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4701	if [[ $do_remote = true ]]
4702	then
4703	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4704	fi
4705
4706
4707	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4708	jobfile=jobfile.$RANDOM
4709
4710
4711	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4712	echo "mkdir $TEMPDIR" >> $jobfile
4713	echo "cd $TEMPDIR" >> $jobfile
4714
4715
4716	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4717	if [[ $do_trace = true ]]
4718	then
4719	echo "set -x" >> $jobfile
4720	else
4721	echo "set +vx" >> $jobfile
4722	fi
4723
4724
4725	# initialize the environment and load modules
4726	if [[ "$init_cmds" != "" ]]
4727	then
4728	echo "$init_cmds" >> $jobfile
4729	fi
4730	if [[ "$module_calls" != "" ]]
4731	then
4732	echo "$module_calls" >> $jobfile
4733	fi
4734
4735
4736	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4737	# DATEI FUER DEN JOB
4738	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4739	then
4740
4741	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4742	# KOPIEREN
4743	if [[ $restart_run != true ]]
4744	then
4745	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4746	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4747	fi
4748
4749	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4750	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4751	echo "set -x" >> $jobfile
4752	if [[ $host = $localhost ]]
4753	then
4754	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4755	else
4756	if [[ $host != ibmkisti ]]
4757	then
4758	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4759	else
4760	# on KISTI's IBM firewall is only opened on interactive node
4761	echo "localdir=\`pwd\`" >> $jobfile
4762	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4763	fi
4764	fi
4765	echo "export SOURCES_COMPLETE=true" >> $jobfile
4766
4767	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4768	# ARBEITSVERZEICHNIS VERSCHIEBEN
4769	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4770	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4771	echo "execute_mrun=true" >> $jobfile
4772	echo " " >> $jobfile
4773
4774	else
4775
4776	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4777	# SOWIE GEGEBENENFALLS DES MAKEFILES
4778	if [[ $do_compile = true ]]
4779	then
4780
4781	source_catalog=SOURCES_FOR_RUN_$fname
4782
4783	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4784	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4785	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4786	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4787	echo "export SOURCES_COMPLETE=true" >> $jobfile
4788	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4789
4790	for filename in $source_list
4791	do
4792	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4793	echo "cat > $filename << \"%END%\"" >> $jobfile
4794	cat $source_catalog/$filename >> $jobfile
4795	echo " " >> $jobfile
4796	echo "%END%" >> $jobfile
4797	echo " " >> $jobfile
4798	done
4799
4800	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4801	echo "cat > Makefile << \"%END%\"" >> $jobfile
4802	cat $source_catalog/Makefile >> $jobfile
4803	echo " " >> $jobfile
4804	echo "%END%" >> $jobfile
4805	echo " " >> $jobfile
4806
4807	echo "cd - > /dev/null" >> $jobfile
4808
4809	fi
4810
4811
4812	# ABSPEICHERN DER KONFIGURATIONSDATEI
4813	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4814	# Lines with #$ coming from the svn keyword substitution are
4815	# removed from the config file in order to avoid problems
4816	# with the SGE batch system
4817	echo "cat > $config_file << \"%END%\"" >> $jobfile
4818	if [[ $host = lckyuh ]]
4819	then
4820	# no cross compiler on compute node
4821	sed 's/frtpx/frt/g' $config_file >> $jobfile
4822	else
4823	sed 's/#$.*//g' $config_file >> $jobfile
4824	fi
4825	echo "%END%" >> $jobfile
4826	echo " " >> $jobfile
4827
4828
4829	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4830	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4831	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4832	if [[ $host = lckyuh ]]
4833	then
4834	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4835	else
4836	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4837	fi
4838	echo "%END%" >> $jobfile
4839	echo "chmod u+x $mrun_script_name" >> $jobfile
4840	echo "execute_mrun=true" >> $jobfile
4841	echo " " >> $jobfile
4842
4843	fi
4844
4845
4846	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4847	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4848	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4849	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4850	if [[ $do_remote = true ]]
4851	then
4852	(( i = 0 ))
4853	while (( i < iin ))
4854	do
4855	(( i = i + 1 ))
4856	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4857	if [[ "${transin[$i]}" = job ]]
4858	then
4859	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4860	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4861	echo " " >> $jobfile
4862	echo "%END%" >> $jobfile
4863	else
4864	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4865	fi
4866
4867	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4868	echo "if [[ \$? = 1 ]]" >> $jobfile
4869	echo "then" >> $jobfile
4870	echo " echo \" \" " >> $jobfile
4871	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4872	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4873	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4874	echo " execute_mrun=false" >> $jobfile
4875	echo "fi" >> $jobfile
4876	done
4877	fi
4878
4879	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4880	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4881	echo "LOCAL_PWD=$working_directory" >> $jobfile
4882	echo "export LOCAL_PWD" >> $jobfile
4883
4884	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4885	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4886	echo "export LOCAL_MRUN_PATH" >> $jobfile
4887
4888	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4889	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4890	then
4891	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4892	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4893	then
4894	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4895	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4896	fi
4897
4898	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4899	echo "set -x" >> $jobfile
4900	echo "queue=$queue" >> $jobfile
4901	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4902	echo 'ls -al; echo `pwd`' >> $jobfile
4903	echo "cd \$HOME" >> $jobfile
4904	echo "rm -rf $TEMPDIR" >> $jobfile
4905
4906
4907
4908
4909	# JOB PER SUBJOB STARTEN
4910	if [[ $silent = false ]]
4911	then
4912	printf "\n "
4913	else
4914	printf "\n\n"
4915	fi
4916
4917	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4918	rm -rf $jobfile
4919
4920
4921	fi # ENDE REMOTE-TEIL
4922
4923
4924
4925	# ENDE DER PROZEDUR

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source: palm/trunk/SCRIPTS/mrun @ 1106

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