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source: palm/trunk/SCRIPTS/mrun @ 1103

Last change on this file since 1103 was 1103, checked in by raasch, 11 years ago
small bugfixes; mrun and subjob scripts are made bash compatible; further adjustments for lckyuh
Property svn:keywords set to `Id Rev`
File size: 179.6 KB

Line
1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	# default script runs again under ksh, because of unsolved problems with read
25	# from stdin: when bash script is called from a ksh, message "read error: 0:
26	# Resource temporarily unavailable" appears and script does not stop,
27	# further bash compatibility adjustments,
28	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
29	# on lckyuh, but mrun does not terminate and issues a warning instead
30	#
31	# Former revisions:
32	# -----------------
33	# $Id: mrun 1103 2013-02-20 02:15:53Z raasch $
34	#
35	# 1101 2013-02-17 10:20:21Z raasch
36	# script now running under bash instead of ksh, which required small adjustments
37	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
38	# read from stdin),
39	# cross compilername on lckyuh compute nodes replaced by real compiler name
40	#
41	# 1099 2013-02-10 01:47:43Z raasch
42	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
43	# and for Forwind cluster (lcflow)
44	# small further adjustments for lckyut
45	#
46	# 1094 2013-02-03 01:52:12Z raasch
47	# explicit ssh/scp port can be set in config file with environment variable
48	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
49	# decalpha parts (yonsei) removed
50	#
51	# 2013-02-02 07:06:13Z raasch
52	# adjustments for Kyushu-University computing center (lckyut - tatara)
53	#
54	# 1083 2013-01-04 10:22:09Z maronga
55	# bugfix in parameter file check (read %cpp_options was missing)
56	#
57	# 1069 2012-11-28 16:18:43Z maronga
58	# bugfix: coupling mode was always set to mpi2, typos removed
59	#
60	# 1058 2012-11-21 07:00:35Z raasch
61	# Intel inspector (inspxe) is given the number of PEs instead of the number of
62	# nodes
63	#
64	# 1046 2012-11-09 14:38:45Z maronga
65	# code put under GPL (PALM 3.9)
66	#
67	# 21/03/94 - Siggi - first version finished
68	# 03/03/94 - Siggi - script development started
69	#
70	#--------------------------------------------------------------------------------#
71	# mrun - script for running PALM jobs
72	#--------------------------------------------------------------------------------#
73
74
75
76	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
77
78	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
79	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
80	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
81
82	AddFilenames=""
83	additional_conditions=""
84	add_source_path=""
85	afname=""
86	archive_save=true
87	archive_system=none
88	check_namelist_files=true
89	combine_plot_fields=true
90	compiler_name=""
91	cond1=""
92	cond2=""
93	config_file=.mrun.config
94	coupled_dist=""
95	coupled_mode="mpi1"
96	cpp_opts=""
97	cpp_options=""
98	cpumax=0
99	cpurest=0
100	delete_temporary_catalog=true
101	do_batch=false
102	do_compile=true
103	do_remote=false
104	do_stagein=true
105	do_stageout=true
106	do_trace=false
107	email_notification="none"
108	exclude=""
109	executable=""
110	execution_error=false
111	fimm=false
112	fname=test
113	fromhost=""
114	global_revision=""
115	group_number=none
116	host=""
117	host_file=""
118	hp=""
119	ignore_archive_error=false
120	input_list=""
121	interpreted_config_file=""
122	job_catalog="~/job_queue"
123	job_on_file=""
124	keep_data_from_previous_run=false
125	link_local_input=false
126	link_local_output=false
127	localhost_realname=$(hostname)
128	local_compile=false
129	local_dvrserver_running=.FALSE.
130	locat=normal
131	mainprog=""
132	makefile=""
133	max_par_io_str=""
134	mc=$0
135	while [[ $(echo $mc \| grep -c "/") != 0 ]]
136	do
137	mc=`echo $mc \| cut -f2- -d"/"`
138	done
139	module_calls=""
140	mrun_script_name=$mc
141	netcdf_inc=""
142	netcdf_lib=""
143	netcdf_support=false
144	node_usage=default
145	numprocs=""
146	numprocs_atmos=0
147	numprocs_ocean=0
148	OOPT=""
149	openmp=false
150	output_list=""
151	package_list=""
152	punkte="..........................................................."
153	queue=none
154	read_from_config=""
155	restart_run=false
156	if [[ `hostname` = rte10 ]]
157	then
158	return_addres=133.5.185.60
159	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
160	elif [[ `hostname` = climate0 ]]
161	then
162	return_addres=165.132.26.68
163	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
164	elif [[ `hostname` = urban00 ]]
165	then
166	return_addres=147.46.30.151
167	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
168	else
169	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
170	fi
171	return_password=""
172	return_username=$LOGNAME
173	remotecall=false
174	remote_username=""
175	run_coupled_model=false
176	run_mode=""
177	scirocco=false
178	store_on_archive_system=false
179	striche=" ----------------------------------------------------------------------------"
180	silent=false
181	source_list=""
182	source_path=SOURCE
183	tasks_per_node=""
184	threads_per_task=1
185	tmpcreate=false
186	tmp_data_catalog=""
187	transfer_problems=false
188	usern=$LOGNAME
189	use_openmp=false
190	version="MRUN 2.0 Rev$Rev: 1103 $"
191	working_directory=`pwd`
192	TOPT=""
193	XOPT=""
194	zeit=$( date \| cut -c 12-19 )
195
196	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
197	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char maxcycle minuten nodes pes sekunden tp1
198
199
200
201
202	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
203	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
204
205	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
206	# EXPORTIERT WERDEN
207	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
208	export group_number input_list memory numprocs output_list queue run_mode
209
210
211
212	# FEHLERBEHANDLUNG
213	# BEI EXIT:
214	trap 'rm -rf $working_directory/tmp_mrun
215	if [[ $locat != localhost ]]
216	then
217	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
218	# then
219	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
220	#MRUN-calls on $localhost
221	#
222	#date and time user localhost remotehost termination mrun-command
223	#--------------------------------------------------------------------------------------------------------------------
224	#%STATEND%
225	# chmod 666 ${mrun_path}/statistik/mrun_statistik
226	# fi
227	#
228	# # EINTRAG IN DIE STATISTIK-DATEI
229	# string1=`date` #-L35
230	# string2=$usern #-L12
231	# string3=$localhost_realname #-L12
232	# string4=$host #-L12
233	# string5=$locat #-L12
234	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
235	# then
236	# if [[ $do_batch = true ]]
237	# then
238	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
239	# else
240	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
241	# fi
242	# fi
243	echo " " > /dev/null
244	fi
245
246	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
247	then
248
249	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
250	(( i = 0 ))
251	while (( i < iec ))
252	do
253	(( i = i + 1 ))
254	printf "\n *** Execution of ERROR-command:\n"
255	printf " >>> ${err_command[$i]}\n"
256	eval ${err_command[$i]}
257	done
258	if [[ -n $interpreted_config_file ]]
259	then
260	rm -rf $interpreted_config_file
261	fi
262	if [[ -n .mrun_environment ]]
263	then
264	rm -rf .mrun_environment
265	fi
266	if [[ $tmpcreate = true ]]
267	then
268	printf "\n *** Contents of \"$TEMPDIR\":\n"
269	ls -al; cd
270	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
271	fi
272	if [[ "$dvrserver_id" != "" ]]
273	then
274	echo "+++ killing dvrserver_id=$dvrserver_id"
275	kill $dvrserver_id
276	fi
277	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
278	then
279	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
280	fi
281	printf "\n\n+++ MRUN killed \n\n"
282	elif [[ $locat != control_c ]]
283	then
284	printf "\n\n --> all actions finished\n\n"
285	printf " Bye, bye $usern !!\n\n"
286	fi' exit
287
288
289	# BEI TERMINAL-BREAK:
290	trap 'rm -rf $working_directory/tmp_mrun
291	rm -rf $working_directory/tmp_check_namelist_files
292	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
293	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
294	then
295	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
296	fi
297	if [[ "$dvrserver_id" != "" ]]
298	then
299	echo "+++ killing dvrserver_id=$dvrserver_id"
300	kill $dvrserver_id
301	fi
302	printf "\n+++ MRUN killed by \"^C\" \n\n"
303	locat=control_c
304	exit
305	' 2
306
307
308	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
309	# BEEN SET
310	if [[ "$PALM_BIN" = "" ]]
311	then
312	printf "\n +++ environment variable PALM_BIN has not been set"
313	printf "\n please set it to the directory where the PALM scripts are located"
314	locat=palm_bin; exit
315	fi
316	export PATH=$PALM_BIN:$PATH
317
318
319
320	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
321	# FUER FOLGEJOBS BENOETIGT WIRD
322	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
323	do
324	case $option in
325	(a) afname=$OPTARG;;
326	(A) store_on_archive_system=true; mc="$mc -A";;
327	(b) do_batch=true; mc="$mc -b";;
328	(B) delete_temporary_catalog=false; mc="$mc -B";;
329	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
330	(C) restart_run=true; mc="$mc -C";;
331	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
332	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
333	(F) job_on_file="-D"; mc="$mc -F";;
334	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
335	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
336	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
337	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
338	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
339	(I) ignore_archive_error=true; mc="$mc -I";;
340	(k) keep_data_from_previous_run=true; mc="$mc -k";;
341	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
342	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
343	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
344	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
345	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
346	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
347	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
348	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
349	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
350	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
351	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
352	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
353	(S) read_from_config=false; mc="$mc -S";;
354	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
355	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
356	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
357	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
358	(v) silent=true; mc="$mc -v";;
359	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
360	(x) do_trace=true;set -x; mc="$mc -x";;
361	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
362	(y) ocean_file_appendix=true; mc="$mc -y";;
363	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
364	(z) check_namelist_files=false; mc="$mc -z";;
365	(Z) combine_plot_fields=false; mc="$mc -Z";;
366	(\?) printf "\n +++ unknown option $OPTARG \n"
367	printf "\n --> type \"$0 ?\" for available options \n"
368	locat=parameter;exit;;
369	esac
370	done
371
372
373	# EVTL. POSITIONSPARAMETER EINLESEN
374	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
375	(( to_shift = $OPTIND - 1 ))
376	shift $to_shift
377
378	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
379	if [[ "$1" = "?" ]]
380	then
381	(printf "\n *** mrun can be called as follows:\n"
382	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
383	printf "\n Description of available options:\n"
384	printf "\n Option Description Default-Value"
385	printf "\n -a base name of input files equiv. -d"
386	printf "\n -A archiving when using file-attribute fl"
387	printf "\n -b batch-job on local machine ---"
388	printf "\n -B do not delete temporary directory at end ---"
389	printf "\n -c configuration file .mrun.config"
390	printf "\n -d base name of files attached to program test"
391	printf "\n -D preprocessor(cpp)-directives \"\" "
392	printf "\n -F create remote job file only ---"
393	printf "\n -h execution host $localhost_realname"
394	printf "\n -i INPUT control list \"\" "
395	printf "\n -I archiving errors of previous batch-jobs"
396	printf "\n will be ignored"
397	printf "\n -k keep data from previous run"
398	printf "\n -K additional conditions for controling"
399	printf "\n usage of conditional code and"
400	printf "\n env-variables in configuration file \"\" "
401	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
402	printf "\n -M Makefile name Makefile"
403	printf "\n -n node usage (shared/not_shared) depending on -h"
404	printf "\n -o OUTPUT control list \"\" "
405	printf "\n -O use OpenMP ---"
406	printf "\n -p software package list \"\" "
407	printf "\n -q queue \"$queue\" "
408	printf "\n -r run control list (combines -i -o) \"\" "
409	printf "\n -s filenames of routines to be compiled \"\" "
410	printf "\n must end with .f, .f90, .F, or .c !"
411	printf "\n use \"..\" for more than one file and wildcards"
412	printf "\n -s LM compiles all locally modified files"
413	printf "\n -S config file interpreted by shellscript ---"
414	printf "\n -t allowed cpu-time in seconds (batch) 0"
415	printf "\n -T tasks per node depending on -h"
416	printf "\n -u username on remote machine \"\" "
417	printf "\n -v no prompt for confirmation ---"
418	printf "\n -w maximum parallel io streams as given by -X"
419	printf "\n -x tracing of mrun for debug purposes ---"
420	printf "\n -X # of processors (on parallel machines) 1"
421	printf "\n -y add appendix \"_O\" to all local output"
422	printf "\n files (ocean precursor runs followed by"
423	printf "\n coupled atmosphere-ocean runs) ---"
424	printf "\n -Y run coupled model, \"#1 #2\" with"
425	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
426	printf "\n -z disable a priori parameter file check ---"
427	printf "\n -Z skip combine_plot_fields at the end of "
428	printf "\n the simulation ---"
429	printf "\n "
430	printf "\n Possible values of positional parameter <modus>:"
431	printf "\n \"?\" - this outline \n\n") \| more
432	exit
433	elif [[ "$1" != "" ]]
434	then
435	printf "\n +++ positional parameter $1 unknown \n"
436	locat=parameter; exit
437	fi
438
439
440
441	# KURZE STARTMELDUNG
442	printf "\n*** $version "
443	printf "\n will be executed. Please wait ..."
444
445
446
447	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
448	if [[ ! -f $config_file ]]
449	then
450	printf "\n\n +++ configuration file: "
451	printf "\n $config_file"
452	printf "\n does not exist"
453	locat=connect; exit
454	fi
455
456
457	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
458	line=""
459	grep "%host_identifier" $config_file > tmp_mrun
460	while read line
461	do
462	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
463	then
464	HOSTNAME=`echo $line \| cut -d" " -s -f2`
465	host_identifier=`echo $line \| cut -d" " -s -f3`
466	if [[ $localhost_realname = $HOSTNAME ]]
467	then
468	localhost=$host_identifier
469	break
470	fi
471	fi
472	done < tmp_mrun
473
474	if [[ "$localhost" = "" ]]
475	then
476	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
477	printf "\n for local host \"$localhost_realname\"."
478	printf "\n Please add line"
479	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
480	printf "\n to the configuration file."
481	locat=localhost; exit
482	fi
483
484
485	# HOSTSPEZIFISCHE VARIABLEN SETZEN
486	case $localhost_realname in
487	(r1\|r2\|h01\|b01) archive_system=tivoli;;
488	(cs*) archive_system=ut;;
489	(fimm.bccs.uib.no) fimm=true;;
490	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
491	(scirocco) scirocco=true;;
492	esac
493
494
495
496	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
497	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
498	[[ "$afname" = "" ]] && afname=$fname
499
500
501	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
502	if [[ "$run_mode" != "" ]]
503	then
504	input_list="$input_list $run_mode"
505	output_list="$output_list $run_mode"
506	fi
507
508
509	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
510	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
511	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
512	# STARTET)
513	if [[ "$fromhost" = "" ]]
514	then
515	fromhost=$localhost
516	fi
517
518
519	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
520	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
521	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
522	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
523	if [[ -n $host && "$host" != $localhost ]]
524	then
525	do_batch=true
526	do_remote=true
527	case $host in
528	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
529	(*) printf "\n"
530	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
531	printf "\n is not available"
532	locat=nqs; (( iec = 0 )); exit;;
533	esac
534	else
535	host=$localhost
536	fi
537
538
539	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
540	if [[ -n $additional_conditions ]]
541	then
542	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
543	cond1=`echo $additional_conditions \| cut -d" " -f1`
544	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
545	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
546	if [[ -n $dummy ]]
547	then
548	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
549	locat=options; exit
550	fi
551	block=_$cond1
552	[[ -n $cond2 ]] && block=${block}_$cond2
553	fi
554
555
556	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
557	if [[ $run_coupled_model = true ]]
558	then
559
560	if [[ -n $coupled_dist ]]
561	then
562
563	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
564	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
565
566	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
567	then
568
569	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
570	printf "\n PEs (total) : $numprocs"
571	printf "\n PEs (atmosphere): $numprocs_atmos"
572	printf "\n PEs (ocean) : $numprocs_ocean"
573	locat=coupling; exit
574
575	fi
576
577	else
578
579	(( numprocs_ocean = $numprocs / 2 ))
580	(( numprocs_atmos = $numprocs / 2 ))
581
582	fi
583	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
584
585	# GET coupled_mode FROM THE CONFIG FILE
586	line=""
587	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
588	while read line
589	do
590	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
591	then
592	coupled_mode="mpi2"
593	fi
594	done < tmp_mrun
595
596	fi
597
598
599	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
600	# ARCHIVIERUNG FEHLGESCHLAGEN IST
601	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
602	then
603	if [[ $ignore_archive_error = false ]]
604	then
605	printf "\n +++ data archiving of previous run failed"
606	printf "\n see directory \~/job_queue on remote machine"
607	locat=archive; exit
608	else
609	printf "\n +++ warning: data archiving in a previous run failed"
610	printf "\n MRUN continues, trying to get backup copy"
611	fi
612	fi
613
614
615	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
616	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
617	mrun_memory=$memory
618	mrun_group_number=$group_number
619	mrun_cpumax=$cpumax
620	mrun_numprocs=$numprocs
621
622
623	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
624	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
625	if [[ "$read_from_config" = false ]]
626	then
627
628	[[ $silent = false ]] && printf "\n Reading the configuration file... "
629	while read zeile
630	do
631	[[ $silent = false ]] && printf "."
632
633
634	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
635	# ERSETZEN
636	eval zeile=\"$zeile\"
637
638
639	# INTERPRETATION DER ZEILE
640	if [[ "$(echo $zeile)" = "" ]]
641	then
642	# LEERZEILE, KEINE AKTION
643	continue
644
645	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
646	then
647
648	# ZEILE IST KOMMENTARZEILE
649	true
650
651	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
652	then
653
654	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
655	zeile=$(echo $zeile \| cut -c2-)
656	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
657	var=`echo $zeile \| cut -d" " -f1`
658	value=`echo $zeile \| cut -d" " -s -f2`
659	for_host=`echo $zeile \| cut -d" " -s -f3`
660	for_cond1=`echo $zeile \| cut -d" " -s -f4`
661	for_cond2=`echo $zeile \| cut -d" " -s -f5`
662
663	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
664	then
665
666	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
667	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
668	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
669
670
671	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
672	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
673	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
674	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
675	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
676	# KONFIGURATIONSDATEI
677	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
678	then
679	eval $var=\$value
680
681	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
682	if [[ $do_trace = true ]]
683	then
684	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
685	fi
686	fi
687
688	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
689	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
690	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
691	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
692	if [[ $var = host ]]
693	then
694	if [[ -n $host && "$host" != $localhost ]]
695	then
696	do_batch=true
697	do_remote=true
698	case $host in
699	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
700	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
701	printf "\n is not available"
702	locat=nqs; exit;;
703	esac
704	else
705	host=$localhost
706	fi
707	fi
708
709	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
710	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
711	# DEN PROGRAMMEN BENOETIGT WERDEN
712	export $var
713	fi
714
715
716
717
718	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
719	then
720
721	# ZEILE DEFINIERT ERROR-KOMMANDO
722	(( iec = iec + 1 ))
723	zeile=$(echo $zeile \| cut -c4-)
724	err_command[$iec]="$zeile"
725
726	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
727	then
728
729	# ZEILE DEFINIERT INPUT-KOMMANDO
730	(( iic = iic + 1 ))
731	zeile=$(echo $zeile \| cut -c4-)
732	in_command[$iic]="$zeile"
733
734	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
735	then
736
737	# ZEILE DEFINIERT OUTPUT-KOMMANDO
738	(( ioc = ioc + 1 ))
739	zeile=$(echo $zeile \| cut -c4-)
740	out_command[$ioc]="$zeile"
741
742	else
743
744	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
745	# s2a: in/out - Feld
746	# s2b: loc - Feld (optional)
747	# s2c: tr/ar - Feld (optional)
748	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
749	s1=`echo $zeile \| cut -d" " -f1`
750	s2=`echo $zeile \| cut -d" " -s -f2`
751	s2a=$(echo $s2 \| cut -d":" -f1)
752	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
753	then
754	s2b=""
755	s2c=""
756	else
757	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
758	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
759	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
760	fi
761	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
762	s3=`echo $zeile \| cut -d" " -f3`
763	s4=`echo $zeile \| cut -d" " -s -f4`
764	s5=`echo $zeile \| cut -d" " -s -f5`
765	s6=`echo $zeile \| cut -d" " -s -f6`
766
767
768	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
769	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
770	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
771	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
772	# HANDEN SEIN MUSS (D.H. s2b = loc)
773	IFSALT="$IFS"; IFS="$IFS:"
774	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
775	then
776	found=false
777	for actual in $input_list
778	do
779	for formal in $s3
780	do
781	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
782	done
783	done
784	if [[ $found = true ]]
785	then
786	(( iin = iin + 1 ))
787	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
788	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
789	extin[$iin]=$s6
790	fi
791	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
792	then
793	found=false
794	for actual in $output_list
795	do
796	for formal in $s3
797	do
798	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
799	done
800	done
801	if [[ $found = true ]]
802	then
803	(( iout = iout + 1 ))
804	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
805	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
806	fi
807	elif [[ "$s2a" != in && "$s2a" != out ]]
808	then
809	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
810	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
811	locat=connect; exit
812	fi
813	IFS="$IFSALT"
814	fi
815	done < $config_file
816
817	else
818
819
820	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
821	[[ $silent = false ]] && printf "..."
822	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
823	export interpreted_config_file=.icf.$RANDOM
824
825
826
827	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
828	# VERFUEGUNG STELLEN
829	cat > .mrun_environment << %%END%%
830	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
831	config_file = '$config_file', do_remote = '$do_remote',
832	do_trace = '$do_trace', host = '$host',
833	input_list = '$input_list', icf = '$interpreted_config_file',
834	localhost = '$localhost', output_list = '$output_list' /
835
836	%%END%%
837
838	if [[ $localhost_realname = "sx-fep" ]]
839	then
840	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
841	else
842
843	if [[ "$host" != $localhost ]]
844	then
845
846	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
847	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
848	if [[ $? != 0 ]]
849	then
850	printf "\n\n +++ no interpret_config found"
851	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
852	locat=interpret_config; exit
853	fi
854	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
855	$interpret_config_executable
856
857	else
858
859	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
860	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
861	then
862	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
863	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
864	locat=interpret_config; exit
865	else
866	interpret_config${block}.x
867	fi
868
869	fi
870	fi
871	rm .mrun_environment
872
873
874	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
875	chmod u+x $interpreted_config_file
876	export PATH=$PATH:.
877	. $interpreted_config_file
878	rm $interpreted_config_file
879
880	fi
881
882
883	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
884	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
885	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
886	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
887	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
888	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
889	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
890
891
892	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
893	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
894	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
895	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
896	if [[ "$SOURCES_COMPLETE" = "" ]]
897	then
898
899	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
900	# VEREINBART WURDE
901	source_path=""
902	line=""
903	grep "%source_path" $config_file > tmp_mrun
904	while read line
905	do
906	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
907	then
908	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
909	then
910	global_source_path=`echo $line \| cut -d" " -f2`
911	fi
912	fi
913	done < tmp_mrun
914
915	line=""
916	found=false
917	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
918	while read line
919	do
920	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
921	then
922	if [[ $found = true ]]
923	then
924	printf "\n\n +++ more than one source path found in configuration file"
925	printf "\n for local host \"$localhost\" "
926	locat=source_path; exit
927	fi
928	source_path=`echo $line \| cut -d" " -f2`
929	found=true
930	fi
931	done < tmp_mrun
932	rm tmp_mrun
933
934	if [[ "$source_path" = "" ]]
935	then
936	if [[ "$global_source_path" != "" ]]
937	then
938	source_path=$global_source_path
939	else
940	printf "\n\n +++ no source path found in configuration file"
941	printf "\n for local host \"$localhost\" "
942	locat=source_path; exit
943	fi
944	fi
945	eval source_path=$source_path
946
947	if [[ ! -d $source_path ]]
948	then
949	printf "\n\n +++ source path \"$source_path\" on local host"
950	printf "\n \"$localhost\" does not exist"
951	locat=source_path; exit
952	fi
953
954	fi
955
956
957	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
958	# DURCH OPTION -G MITGETEILT)
959	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
960	then
961	global_revision=`svnversion $source_path 2>/dev/null`
962	global_revision="Rev: $global_revision"
963	fi
964
965
966	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
967	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
968	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
969	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
970	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
971	if [[ -n $host && "$host" != $localhost ]]
972	then
973	do_batch=true
974	do_remote=true
975	case $host in
976	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
977	(*) printf "\n"
978	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
979	printf "\n is not available"
980	locat=nqs; (( iec = 0 )); exit;;
981	esac
982	else
983	host=$localhost
984	fi
985
986
987	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
988	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
989	then
990
991	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
992	if [[ ! -n $numprocs ]]
993	then
994	printf "\n"
995	printf "\n +++ option \"-K parallel\" requires additional specification"
996	printf "\n of the number of processors to be used by"
997	printf "\n mrun-option \"-X\" or by environment-variable"
998	printf "\n \"numprocs\" in the configuration file"
999	locat=numprocs; (( iec = 0 )); exit
1000	fi
1001
1002	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1003	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1004	# GESAMTPROZESSORANZAHL IST
1005	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1006	then
1007	printf "\n"
1008	printf "\n +++ option \"-T\" (tasks per node) is missing"
1009	printf "\n set -T option or define tasks_per_node in the config file"
1010	locat=tasks_per_node; (( iec = 0 )); exit
1011	fi
1012	if [[ $host != lcflow && $host != lcxt5m ]]
1013	then
1014	(( ival = $tasks_per_node ))
1015	(( pes = numprocs ))
1016	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1017	# then
1018	# (( pes = pes - 1 ))
1019	# fi
1020	(( ii = pes / ival ))
1021	if (( pes - ii * ival > 0 ))
1022	then
1023	printf "\n"
1024	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1025	printf "\n divisor of the total number of processors (option \"-X\")"
1026	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1027	locat=tasks_per_node; (( iec = 0 )); exit
1028	fi
1029	fi
1030
1031
1032	# IBMY HAT NUR EINEN KNOTEN
1033	if [[ $host = ibmy ]]
1034	then
1035	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1036	then
1037	printf "\n"
1038	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1039	printf "\n total number of processors (option \"-X\")"
1040	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1041	locat=tasks_per_node; (( iec = 0 )); exit
1042	fi
1043	fi
1044
1045
1046	# SETTINGS FOR SUBJOB-COMMAND
1047	TOPT="-T $tasks_per_node"
1048	OOPT="-O $threads_per_task"
1049
1050	# GESAMTZAHL DER KNOTEN BESTIMMEN
1051	if [[ "$tasks_per_node" != "" ]]
1052	then
1053	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1054	fi
1055
1056	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1057	# SETZEN
1058	if [[ $node_usage = default ]]
1059	then
1060	if [[ $host = ibms ]]
1061	then
1062	node_usage=shared
1063	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1064	then
1065	node_usage=singlejob
1066	else
1067	node_usage=not_shared
1068	fi
1069	fi
1070
1071	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1072	then
1073	printf "\n"
1074	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1075	printf "\n \"shared\" or \"not_shared\""
1076	locat=tasks_per_node; (( iec = 0 )); exit
1077	fi
1078
1079	fi
1080
1081	# PRUEFEN, OB HOSTFILE EXISTIERT
1082	if [[ -n $hostfile ]]
1083	then
1084	if [[ ! -f $hostfile ]]
1085	then
1086	printf "\n"
1087	printf "\n +++ hostfile \"$hostfile\" does not exist"
1088	locat=hostfile; exit
1089	fi
1090	fi
1091
1092	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1093	if [[ $host = ibmy && $do_remote = false ]]
1094	then
1095	if [[ ! -f $HOME/.rhosts ]]
1096	then
1097	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1098	printf "\n\n *** file:"
1099	printf "\n $HOME/.rhosts"
1100	printf "\n was created\n"
1101	fi
1102	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1103	then
1104	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1105	printf "\n\n *** file:"
1106	printf "\n $HOME/.rhosts"
1107	printf "\n was extended by the name of the current host\n"
1108	fi
1109	fi
1110
1111
1112	# Set default value for the maximum number of parallel io streams
1113	if [[ "$maximum_parallel_io_streams" = "" ]]
1114	then
1115	maximum_parallel_io_streams=$numprocs
1116	fi
1117
1118
1119	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1120	if [[ "$scp_port" != "" ]]
1121	then
1122	PORTOPT="-P $scp_port"
1123	SSH_PORTOPT="-p $scp_port"
1124	fi
1125
1126
1127	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1128	if [[ $queue = none ]]
1129	then
1130	case $host in
1131	(ibmh) queue=no_class;;
1132	(ibmkisti) queue=class.32plus;;
1133	(ibmy) queue=parallel;;
1134	(lckiaps) queue=normal;;
1135	(lckyoto) queue=ph;;
1136	(lckyuh) queue=fx-single;;
1137	(lckyut) queue=cx-single;;
1138	(lcsgib) queue=testq;;
1139	(lcsgih) queue=testq;;
1140	(lctit) queue=S;;
1141	(nech) queue=none;;
1142	(necriam) queue=SP;;
1143	(unics) queue=unics;;
1144	esac
1145	fi
1146
1147
1148	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1149	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1150	# ERMITTELN
1151	(( i = 0 ))
1152	while (( i < iin ))
1153	do
1154	(( i = i + 1 ))
1155	(( maxcycle = 0 ))
1156
1157	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1158	if [[ "${actionin[$i]}" = di ]]
1159	then
1160	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1161	# REM-MASCHINE AUSWERTEN
1162	eval filename=${pathin[$i]}/${endin[$i]}
1163	else
1164	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1165	# REM-MASCHINE AUSWERTEN
1166	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1167	fi
1168	eval pathname=${pathin[$i]}
1169
1170	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1171	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1172	then
1173	filename_input=$filename
1174	fi
1175
1176	# PRUEFEN AUF VORHANDENSEIN
1177	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1178	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1179	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1180	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1181	then
1182	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1183	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1184	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1185	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1186	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1187	if [[ "${transin[$i]}" != "locopt" ]]
1188	then
1189	printf "\n\n +++ INPUT-file: "
1190	if [[ "${extin[$i]}" = "" ]]
1191	then
1192	printf "\n $filename"
1193	else
1194	printf "\n $filename.${extin[$i]}"
1195	fi
1196	printf "\n does not exist\n"
1197	locat=input; exit
1198	else
1199	transin[$i]="unavailable"
1200	fi
1201	else
1202
1203	# ZYKLUSNUMMER FESTSTELLEN
1204	ls -1 -d $filename > filelist 2>/dev/null
1205	ls -1 -d $filename.* >> filelist 2>/dev/null
1206	while read zeile
1207	do
1208	cycle=$(echo $zeile \| cut -f2 -d".")
1209	if [[ "$cycle" = "$zeile" ]]
1210	then
1211	(( icycle = 0 ))
1212	elif [[ "$cycle" = "${extin[$i]}" ]]
1213	then
1214	(( icycle = 0 ))
1215	else
1216	(( icycle = $cycle ))
1217	fi
1218	if (( icycle > maxcycle ))
1219	then
1220	(( maxcycle = icycle ))
1221	file_to_be_used=$zeile
1222	fi
1223	done <filelist
1224	rm filelist
1225
1226	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1227	if (( maxcycle > 0 ))
1228	then
1229	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1230	then
1231	filename=${filename}.$maxcycle.${extin[$i]}
1232	else
1233	filename=${filename}.$maxcycle
1234	fi
1235	else
1236	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1237	then
1238	filename=${filename}.${extin[$i]}
1239	fi
1240	fi
1241
1242	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1243	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1244	absnamein[$i]=$filename
1245	if (( maxcycle > 0 ))
1246	then
1247	if [[ "${actionin[$i]}" = di ]]
1248	then
1249	frelin[$i]=${endin[$i]}.$maxcycle
1250	else
1251	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1252	fi
1253	else
1254	if [[ "${actionin[$i]}" = di ]]
1255	then
1256	frelin[$i]=${endin[$i]}
1257	else
1258	frelin[$i]=${afname}${endin[$i]}
1259	fi
1260	fi
1261
1262	fi
1263	done
1264
1265	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1266	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1267	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1268	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1269	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1270	(( i = 0 ))
1271	while (( i < iout ))
1272	do
1273	(( i = i + 1 ))
1274	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1275	then
1276	if [[ "${actionout[$i]}" = tr ]]
1277	then
1278	actionout[$i]=""
1279	elif [[ "${actionout[$i]}" = trpe ]]
1280	then
1281	actionout[$i]=pe
1282	elif [[ "${actionout[$i]}" = tra ]]
1283	then
1284	actionout[$i]=a
1285	fi
1286	(( maxcycle = 0 ))
1287	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1288	eval catalogname=${pathout[$i]}
1289	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1290	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1291	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1292	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1293	then
1294
1295	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1296	if cat /dev/null > $filename
1297	then
1298	rm $filename
1299	else
1300
1301	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1302	if [[ ! -d $catalogname ]]
1303	then
1304	if mkdir -p $catalogname
1305	then
1306	printf "\n\n *** directory:"
1307	printf "\n $catalogname"
1308	printf "\n was created\n"
1309	else
1310	printf "\n\n +++ OUTPUT-file:"
1311	printf "\n $filename"
1312	printf "\n cannot be created, because directory does not exist"
1313	printf "\n and cannot be created either"
1314	printf "\n"
1315	locat=output ; exit
1316	fi 2>/dev/null
1317	else
1318	printf "\n\n +++ OUTPUT-file:"
1319	printf "\n $filename"
1320	printf "\n cannot be created, although directory exists"
1321	printf "\n"
1322	locat=output ; exit
1323	fi
1324	fi 2>/dev/null
1325	else
1326
1327	# ZYKLUSNUMMER FESTSTELLEN
1328	ls -1 -d $filename > filelist 2>/dev/null
1329	ls -1 -d $filename.* >> filelist 2>/dev/null
1330	while read zeile
1331	do
1332	cycle=$(echo $zeile \| cut -f2 -d".")
1333	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1334	then
1335	(( icycle = 1 ))
1336	else
1337	(( icycle = $cycle + 1 ))
1338	fi
1339	if (( icycle > maxcycle ))
1340	then
1341	(( maxcycle = icycle ))
1342	fi
1343	done <filelist
1344	rm filelist
1345	fi
1346
1347	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1348	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1349	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1350	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1351	if [[ "${actionout[$i]}" != a ]]
1352	then
1353	if (( maxcycle > 0 ))
1354	then
1355	filename=${filename}.$maxcycle
1356	if cat /dev/null > $filename
1357	then
1358	rm $filename
1359	else
1360	printf "\n +++ OUTPUT-file:"
1361	printf "\n $filename"
1362	printf "\n cannot be created"
1363	locat=output ; exit
1364	fi
1365	fi
1366	else
1367	(( maxcycle = maxcycle - 1 ))
1368	if (( maxcycle > 0 ))
1369	then
1370	filename=${filename}.$maxcycle
1371	fi
1372	fi
1373
1374	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1375	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1376	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1377	pathout[$i]=$filename
1378	if (( maxcycle > 0 ))
1379	then
1380	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1381	else
1382	frelout[$i]=${fname}${endout[$i]}
1383	fi
1384
1385	fi
1386	done
1387
1388
1389	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1390	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1391	then
1392	if [[ "$dvr_inc" = "" ]]
1393	then
1394	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1395	printf "\n This is required for the dvrp_graphics package.\n"
1396	locat=dvr; exit
1397	fi
1398	if [[ "$dvr_lib" = "" ]]
1399	then
1400	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1401	printf "\n This is required for the dvrp_graphics package.\n"
1402	locat=dvr; exit
1403	fi
1404	fi
1405
1406
1407	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1408	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1409	# UEBERSETZT ZU WERDEN)
1410	if [[ "$mainprog" = "" && "$executable" = "" ]]
1411	then
1412	printf "\n +++ neither main program nor executable defined"
1413	locat=source; exit
1414	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1415	then
1416	printf "\n +++ main program as well as executable defined"
1417	locat=source; exit
1418	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1419	then
1420	do_compile=false
1421	fi
1422
1423
1424	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1425	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1426	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1427	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1428	then
1429	rm -rf SOURCES_FOR_RUN_$fname
1430	mkdir SOURCES_FOR_RUN_$fname
1431	fi
1432
1433
1434	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1435	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1436	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1437	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1438	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1439	then
1440
1441	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1442
1443	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1444	then
1445
1446	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1447	source_list=""
1448	cd $source_path
1449
1450
1451	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1452	if [[ ! -d .svn ]]
1453	then
1454	printf "\n\n +++ source directory"
1455	printf "\n \"$source_path\" "
1456	printf "\n is not under control of \"subversion\"."
1457	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1458	fi
1459
1460
1461	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1462	Filenames=""
1463	svn status > tmp_mrun
1464	while read line
1465	do
1466	firstc=`echo $line \| cut -c1`
1467	if [[ $firstc = M \|\| $firstc = "?" ]]
1468	then
1469	Name=`echo "$line" \| cut -c8-`
1470	extension=`echo $Name \| cut -d. -f2`
1471	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1472	then
1473	Filenames="$Filenames "$Name
1474	fi
1475	fi
1476	done < tmp_mrun
1477
1478
1479	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1480	for dateiname in $Filenames
1481	do
1482	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1483	source_list=$source_list"$dateiname "
1484	done
1485
1486	cd - > /dev/null
1487
1488
1489	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1490	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1491	# VORHANDEN
1492	elif [[ "$source_list" != "" && $restart_run != true ]]
1493	then
1494
1495	cd $source_path
1496
1497	for filename in $source_list
1498	do
1499
1500	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1501	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1502	then
1503	printf "\n +++ source code file: $filename"
1504	printf "\n must not contain (\"/\") "
1505	locat=source; exit
1506	fi
1507
1508	if [[ ! -f $filename ]]
1509	then
1510	printf "\n +++ source code file: $filename"
1511	printf "\n does not exist"
1512	locat=source; exit
1513	else
1514	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1515	fi
1516
1517	done
1518
1519	cd - > /dev/null
1520
1521	fi
1522
1523
1524	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1525	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1526	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1527	if [[ $restart_run != true ]]
1528	then
1529
1530	if [[ ! -f "$source_path/$mainprog" ]]
1531	then
1532	printf "\n\n +++ main program: $mainprog"
1533	printf "\n does not exist in source directory"
1534	printf "\n \"$source_path\"\n"
1535	locat=source; exit
1536	else
1537	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1538	then
1539	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1540	source_list=${mainprog}" $source_list"
1541	fi
1542	fi
1543	fi
1544
1545
1546	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1547	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1548	if [[ "$restart_run" != true ]]
1549	then
1550	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1551	if [[ ! -f $makefile ]]
1552	then
1553	printf "\n +++ file \"$makefile\" does not exist"
1554	locat=make; exit
1555	else
1556	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1557	fi
1558	fi
1559
1560
1561	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1562	if [[ $restart_run != true && "$add_source_path" != "" ]]
1563	then
1564
1565	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1566	if [[ ! -d $add_source_path ]]
1567	then
1568	printf "\n\n +++ WARNING: additional source code directory"
1569	printf "\n \"$add_source_path\" "
1570	printf "\n does not exist or is not a directory."
1571	printf "\n No source code will be used from this directory!\n"
1572	add_source_path=""
1573	if [[ $silent == false ]]
1574	then
1575	sleep 3
1576	fi
1577	else
1578
1579	cd $add_source_path
1580	found=false
1581
1582	Names=$(ls -1 *.f90 2>&1)
1583	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1584	Names=$(ls -1 *.F90 2>&1)
1585	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1586	Names=$(ls -1 *.F 2>&1)
1587	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1588	Names=$(ls -1 *.f 2>&1)
1589	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1590	Names=$(ls -1 *.c 2>&1)
1591	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1592
1593	cd - > /dev/null
1594	cd SOURCES_FOR_RUN_$fname
1595
1596	# COPY MAKEFILE IF EXISTING
1597	if [[ -f $add_source_path/Makefile ]]
1598	then
1599	printf "\n\n *** user Makefile from directory"
1600	printf "\n \"$add_source_path\" is used \n"
1601	if [[ $silent == false ]]
1602	then
1603	sleep 1
1604	fi
1605	cp $add_source_path/Makefile .
1606	fi
1607
1608	for dateiname in $AddFilenames
1609	do
1610	if [[ -f $dateiname ]]
1611	then
1612	printf "\n +++ source code file \"$dateiname\" found in additional"
1613	printf "\n source code directory \"$add_source_path\" "
1614	printf "\n but was also given with option \"-s\" which means that it should be taken"
1615	printf "\n from directory \"$source_path\"."
1616	locat=source; exit
1617	fi
1618
1619	cp $add_source_path/$dateiname .
1620	source_list="$source_list $dateiname"
1621
1622	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1623	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1624	then
1625	printf "\n\n +++ user file \"$dateiname\" "
1626	printf "\n is not listed in Makefile \n"
1627	locat=source; exit
1628	else
1629
1630	# Default User-Interface von der Liste entfernen, falls Datei
1631	# ein User-Interface enthaelt
1632	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1633	# then
1634	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1635	# then
1636	# rm -rf user_interface.f90
1637	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1638	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1639	# printf "\n since a user-interface is found in file"
1640	# printf "\n \"$add_source_path/$dateiname\" \n"
1641	# sleep 3
1642	# else
1643	if [[ $found = false ]]
1644	then
1645	found=true
1646	printf "\n\n *** following user file(s) added to the"
1647	printf " files to be translated:\n "
1648	fi
1649	printf "$dateiname "
1650	if [[ $silent == false ]]
1651	then
1652	sleep 0.5
1653	fi
1654
1655	fi
1656	done
1657	[[ $found = true ]] && printf "\n"
1658	cd - > /dev/null
1659	fi
1660	fi
1661
1662
1663	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1664	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1665	if [[ $restart_run != true && -n $package_list ]]
1666	then
1667
1668	cd $source_path
1669
1670	for package in $package_list
1671	do
1672
1673	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1674
1675	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1676	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1677	# LIEFERT
1678	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1679
1680
1681	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1682	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1683	for source_list_name in $package_source_list
1684	do
1685	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1686	then
1687
1688	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1689	ending=`echo $source_list_name \| cut -f2 -d.`
1690	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1691	then
1692	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1693	source_list="$source_list $source_list_name"
1694	fi
1695	fi
1696	done
1697	done
1698
1699	cd - > /dev/null
1700	fi
1701
1702
1703	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1704	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1705	# if [[ "$restart_run" != true ]]
1706	# then
1707	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1708	# if [[ ! -f $makefile ]]
1709	# then
1710	# printf "\n +++ file \"$makefile\" does not exist"
1711	# locat=make; exit
1712	# else
1713	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1714	# fi
1715	# fi
1716
1717	fi # do_compile=true
1718
1719
1720	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1721	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1722	if [[ $do_compile = true ]]
1723	then
1724
1725	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1726	# ZUSAMMENSETZEN
1727	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1728	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1729	then
1730	cpp_options="${cpp_options},-D__ibm=__ibm"
1731	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1732	then
1733	cpp_options="$cpp_options -D__nec"
1734	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1735	then
1736	cpp_options="$cpp_options -D__lc"
1737	else
1738	cpp_options="$cpp_options -D__$localhost"
1739	fi
1740
1741	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1742	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1743	then
1744	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1745	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1746	else
1747	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1748	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1749	fi
1750
1751	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1752	if [[ -n $package_list ]]
1753	then
1754	for package in $package_list
1755	do
1756	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1757	then
1758	if [[ $package != "dvrp_graphics+1PE" ]]
1759	then
1760	cpp_options="${cpp_options},-D__$package=__$package"
1761	else
1762	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1763	export use_seperate_pe_for_dvrp_output=true
1764	fi
1765	else
1766	if [[ $package != "dvrp_graphics+1PE" ]]
1767	then
1768	cpp_options="$cpp_options -D__$package"
1769	else
1770	cpp_options="$cpp_options -D__dvrp_graphics"
1771	export use_seperate_pe_for_dvrp_output=true
1772	fi
1773	fi
1774	done
1775	fi
1776
1777	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1778	if [[ -n $cpp_opts ]]
1779	then
1780	for popts in $cpp_opts
1781	do
1782	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1783	then
1784	cpp_options="${cpp_options},-D__$popts=__$popts"
1785	else
1786	cpp_options="$cpp_options -D__$popts"
1787	fi
1788	done
1789	fi
1790
1791	else
1792
1793
1794	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1795	if [[ $do_remote = false ]]
1796	then
1797	if [[ ! -f $executable ]]
1798	then
1799	printf "\n +++ executable file: $executable"
1800	printf "\n does not exist"
1801	locat=executable; exit
1802	fi
1803	fi
1804	fi
1805
1806
1807	# JOBMODUS FESTSTELLEN
1808	if [[ "$ENVIRONMENT" = BATCH ]]
1809	then
1810	jobmo=BATCH
1811	else
1812	jobmo=INTERACTIVE
1813	fi
1814
1815
1816	# no interactive runs on lctit
1817	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1818	then
1819	printf "\n +++ no interactive runs allowed on host \"$host\" "
1820	printf "\n please submit batch job using mrun option \"-b\" \n"
1821	locat=normal; exit
1822	fi
1823
1824
1825	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1826	# DURCH BENUTZER ANDERWEITIG VEREINBART
1827	if [[ "$compiler_name" = "" ]]
1828	then
1829
1830	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1831	locat=compiler_name; exit
1832
1833	fi
1834
1835
1836	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1837	[[ $localhost = necriam ]] && compiler_name=mpif90
1838
1839
1840
1841	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1842	kennung=$RANDOM
1843	if [[ "$tmp_user_catalog" = "" ]]
1844	then
1845	if [[ $localhost = ibmh ]]
1846	then
1847	tmp_user_catalog=$SCRATCH
1848	elif [[ $localhost = nech ]]
1849	then
1850	tmp_user_catalog=$WRKSHR
1851	else
1852	tmp_user_catalog=/tmp
1853	fi
1854	fi
1855	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1856
1857
1858	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1859	# BESTIMMEN
1860	if [[ "$tmp_data_catalog" = "" ]]
1861	then
1862	if [[ $localhost = nech ]]
1863	then
1864	tmp_data_catalog=$WRKSHR/mrun_restart_data
1865	else
1866	tmp_data_catalog=/tmp/mrun_restart_data
1867	fi
1868	fi
1869
1870
1871	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1872	# ERSETZEN
1873	if [[ $do_remote = false && $do_compile = true ]]
1874	then
1875	eval fopts=\"$fopts\"
1876	eval lopts=\"$lopts\"
1877	fi
1878
1879
1880
1881	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1882	fopts="$fopts $netcdf_inc $dvr_inc"
1883	lopts="$lopts $netcdf_lib $dvr_lib"
1884	ROPTS="$ropts"
1885	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1886	# then
1887	XOPT="-X $numprocs"
1888	# fi
1889
1890
1891
1892	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1893	# GRAMM BENOETIGT
1894	done=false
1895	while [[ $done = false ]]
1896	do
1897	cputime=$cpumax
1898	if (( $cputime == 0 ))
1899	then
1900	if [[ $do_batch = true ]]
1901	then
1902	printf "\n +++ cpu-time is undefined"
1903	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1904	printf "\n >>> "
1905	read cputime 1>/dev/null 2>&1
1906	else
1907	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1908	fi
1909	else
1910	done=true
1911	fi
1912	cpumax=$cputime
1913	done
1914
1915	(( minuten = cputime / 60 ))
1916	(( sekunden = cputime - minuten * 60 ))
1917
1918
1919	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1920	if [[ $do_batch = true ]]
1921	then
1922	done=false
1923	while [[ $done = false ]]
1924	do
1925	if (( memory == 0 ))
1926	then
1927	printf "\n +++ memory demand is undefined"
1928	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1929	printf "\n >>> "
1930	read memory 1>/dev/null 2>&1
1931	else
1932	done=true
1933	fi
1934	done
1935	fi
1936
1937
1938	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1939	if [[ $do_remote = true && -z $remote_username ]]
1940	then
1941	while [[ -z $remote_username ]]
1942	do
1943	printf "\n +++ username on remote host \"$host\" is undefined"
1944	printf "\n >>> Please type username:"
1945	printf "\n >>> "
1946	read remote_username
1947	done
1948	mc="$mc -u$remote_username"
1949	fi
1950
1951	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1952	if [[ "$login_init_cmd" != "" ]]
1953	then
1954	export init_cmds="${login_init_cmd};"
1955	fi
1956
1957
1958	# set module load command and export for subjob
1959	if [[ "$modules" != "" ]]
1960	then
1961	if [[ $host = lctit ]]
1962	then
1963	export module_calls=". $modules"
1964	else
1965	export module_calls="module load ${modules};"
1966	fi
1967	fi
1968
1969	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1970	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1971	then
1972	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1973	then
1974	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1975	fi
1976	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1977	# then
1978	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1979	# echo "*** module_calls = $module_calls"
1980	# fi
1981	fi
1982
1983
1984	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1985	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1986	then
1987	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1988	then
1989	mpilib=mpt
1990	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1991	then
1992	mpilib=mvapich
1993	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1994	then
1995	mpilib=impi
1996	fi
1997	fi
1998
1999
2000
2001	###########################################################################
2002	# HEADER-AUSGABE
2003	###########################################################################
2004
2005
2006	calltime=$(date)
2007	printf "\n"
2008	# [[ $silent = false ]] && clear
2009	printf "#------------------------------------------------------------------------# \n"
2010	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2011	printf "\| \| \n"
2012	spalte1="called on:"; spalte2=$localhost_realname
2013	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2014	if [[ $local_compile = false ]]
2015	then
2016	if [[ $do_remote = true ]]
2017	then
2018	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2019	else
2020	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2021	fi
2022	else
2023	spalte1="compiling test only!"; spalte2=""
2024	fi
2025	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2026	if [[ -n $numprocs ]]
2027	then
2028	spalte1="number of PEs:"; spalte2=$numprocs
2029	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2030	fi
2031	if [[ -n $tasks_per_node ]]
2032	then
2033	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2034	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2035	fi
2036	if [[ $maximum_parallel_io_streams != $numprocs ]]
2037	then
2038	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2039	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2040	fi
2041	if [[ $use_openmp = true ]]
2042	then
2043	spalte1="threads per task:"; spalte2="$threads_per_task"
2044	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2045	fi
2046	printf "\| \| \n"
2047	if [[ $do_compile = true ]]
2048	then
2049	if [[ "$mopts" != "" ]]
2050	then
2051	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2052	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2053	zeile=$(echo "$mopts" \| cut -c46-)
2054	while [[ "$zeile" != "" ]]
2055	do
2056	spalte1=""
2057	spalte2=$(echo "$zeile" \| cut -c-45)
2058	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2059	zeile=$(echo "$zeile" \| cut -c46-)
2060	done
2061	fi
2062
2063	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2064	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2065	zeile=$(echo "$cpp_options" \| cut -c46-)
2066	while [[ "$zeile" != "" ]]
2067	do
2068	spalte1=""
2069	spalte2=$(echo "$zeile" \| cut -c-45)
2070	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2071	zeile=$(echo "$zeile" \| cut -c46-)
2072	done
2073
2074	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2075	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2076	zeile=$(echo "$fopts" \| cut -c46-)
2077	while [[ "$zeile" != "" ]]
2078	do
2079	spalte1=""
2080	spalte2=$(echo "$zeile" \| cut -c-45)
2081	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2082	zeile=$(echo "$zeile" \| cut -c46-)
2083	done
2084
2085	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2086	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2087	zeile=$(echo "$lopts" \| cut -c46-)
2088	while [[ "$zeile" != "" ]]
2089	do
2090	spalte1=""
2091	spalte2=$(echo "$zeile" \| cut -c-45)
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	zeile=$(echo "$zeile" \| cut -c46-)
2094	done
2095
2096	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2097	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2098	zeile=$(echo "$modules" \| cut -c46-)
2099	while [[ "$zeile" != "" ]]
2100	do
2101	spalte1=""
2102	spalte2=$(echo "$zeile" \| cut -c-45)
2103	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2104	zeile=$(echo "$zeile" \| cut -c46-)
2105	done
2106
2107	spalte1="main program:"; spalte2=$mainprog
2108	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2109	else
2110	spalte1=executable:; spalte2=$executable
2111	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2112	fi
2113	printf "\| \| \n"
2114	spalte1="base name of files:"; spalte2=$fname
2115	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2116	if [[ $fname != $afname ]]
2117	then
2118	spalte1="base name of input files:"; spalte2=$afname
2119	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2120	fi
2121	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2124	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2125
2126	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2127	then
2128	spalte1="memory demand / PE":; spalte2="$memory MB"
2129	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2130	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2131	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2132	fi
2133
2134	if [[ $do_compile = true ]]
2135	then
2136	printf "\| \| \n"
2137	printf "\| Files to be compiled: \| \n"
2138	zeile=$source_list
2139	while [[ "$zeile" != "" ]]
2140	do
2141	linestart=$(echo $zeile \| cut -c-70)
2142	printf "\| %-70s \| \n" "$linestart"
2143	zeile=$(echo "$zeile" \| cut -c71-)
2144	done
2145	fi
2146	printf "#------------------------------------------------------------------------#"
2147
2148
2149
2150	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2151	if [[ $do_trace = true ]]
2152	then
2153	(( i = 0 ))
2154	while (( i < iin ))
2155	do
2156	(( i = i + 1 ))
2157	if (( i == 1 ))
2158	then
2159	printf "\n\n >>> INPUT-file assignments:\n"
2160	fi
2161	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2162	done
2163	(( i = 0 ))
2164	while (( i < iout ))
2165	do
2166	(( i = i + 1 ))
2167	if (( i == 1 ))
2168	then
2169	printf "\n\n >>> OUTPUT-file assignments:\n"
2170	fi
2171	printf "\n ${localout[$i]} : ${pathout[$i]}"
2172	done
2173	(( i = 0 ))
2174	while (( i < iic ))
2175	do
2176	(( i = i + 1 ))
2177	if (( i == 1 ))
2178	then
2179	printf "\n\n >>> INPUT-commands:\n"
2180	fi
2181	printf "\n ${in_command[$i]}"
2182	done
2183	(( i = 0 ))
2184	while (( i < ioc ))
2185	do
2186	(( i = i + 1 ))
2187	if (( i == 1 ))
2188	then
2189	printf "\n\n >>> OUTPUT-commands:\n"
2190	fi
2191	printf "\n ${out_command[$i]}"
2192	done
2193	fi
2194
2195
2196	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2197	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2198	then
2199	antwort=dummy
2200	printf "\n\n"
2201	printf " >>> everything o.k. (y/n) ? "
2202	while read antwort
2203	do
2204	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2205	then
2206	printf " >>> everything o.k. (y/n) ? "
2207	else
2208	break
2209	fi
2210	done
2211	if [[ $antwort = n \|\| $antwort = N ]]
2212	then
2213	locat=user_abort; (( iec = 0 )); exit
2214	fi
2215	if [[ $do_batch = true ]]
2216	then
2217	printf " >>> batch-job will be created and submitted"
2218	else
2219	if [[ $local_compile = false ]]
2220	then
2221	printf " >>> MRUN will now continue to execute on this machine"
2222	else
2223	printf " >>> a test compilation will now be carried out on this machine"
2224	fi
2225	fi
2226	fi
2227
2228
2229	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2230	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2231	check_depository="${working_directory}/trunk/UTIL"
2232	check_sources="${working_directory}/tmp_check_namelist_files"
2233	skip_check=false
2234
2235	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2236	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2237	then
2238	skip_check=true
2239	reason="run on remote host or parameter file check has not been compiled."
2240	fi
2241	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2242	then
2243	skip_check=true
2244	reason="parameter file check has not been compiled."
2245	fi
2246
2247	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2248	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2249	then
2250	skip_check=true
2251	reason="serial run."
2252	fi
2253
2254	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2255	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2256	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2257	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2258	if [[ $check_namelist_files == false ]]
2259	then
2260	skip_check=true
2261	reason="-z option set."
2262	fi
2263
2264	if [[ $fromhost != $localhost ]]
2265	then
2266	skip_check=true
2267	reason="submitting host is local host."
2268	fi
2269
2270	if [[ $run_coupled_model == true ]]
2271	then
2272	skip_check=true
2273	reason="coupled run."
2274	fi
2275
2276	if [[ $restart_run == true ]]
2277	then
2278	skip_check=true
2279	reason="restart run."
2280	fi
2281
2282	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2283	(( last_char = `echo $filename_input \| wc -c` - 1 ))
2284	last_char=`echo $filename_input \| cut -c $last_char`
2285	if [[ "$last_char" == "f" ]]
2286	then
2287	skip_check=true
2288	reason="restart run."
2289	fi
2290
2291	if [[ $skip_check == false ]]
2292	then
2293	tmp_check=${working_directory}/tmp_check
2294
2295	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2296	# NOT NECESSARILY REQUIRED
2297	line=""
2298	found=false
2299	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2300	while read line1
2301	do
2302	line="$line1"
2303	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2304	then
2305	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2306	found=true
2307	fi
2308	done < $tmp_check
2309
2310	if [[ $found = false ]]
2311	then
2312	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2313	fi
2314
2315	rm -rf ${working_directory}/tmp_check
2316
2317	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2318	for item in $input_list
2319	do
2320	if [[ "$item" == "restart" ]]
2321	then
2322	check_restart=1
2323	else
2324	check_restart=0
2325	fi
2326	done
2327
2328	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2329	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2330	then
2331	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2332	locat=check_namelist; exit
2333	fi
2334
2335	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2336	if [[ $check_restart == 1 ]]
2337	then
2338
2339	filenamef="${filename_input}f"
2340	if [[ ! -f $filenamef ]]
2341	then
2342	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2343	check_restart=0
2344	answer=dummy
2345	printf "\n\n"
2346
2347	if [[ $silent == false ]]
2348	then
2349	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2350	do
2351	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2352	read answer
2353	done
2354	if [[ $answer = a \|\| $answer = A ]]
2355	then
2356	printf "\n +++ Aborting...."
2357	locat=normal; exit
2358	fi
2359	fi
2360	else
2361	check_restart=1
2362	fi
2363	fi
2364
2365	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2366	mkdir $check_sources
2367	cd $check_sources
2368
2369
2370	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2371	if [[ -d $add_source_path ]]
2372	then
2373	printf "\n\n *** copying files from $check_depository"
2374	cp $check_depository/check_namelist_files.tar ./
2375
2376	printf "\n\n *** untar of makefile and source files in $check_sources"
2377	tar -xf check_namelist_files.tar > /dev/null 2>&1
2378
2379	printf "\n\n *** adding user code."
2380	cp $add_source_path/* ./
2381	touch check_namelist_files.f90
2382
2383	# GET COMPILER OPTIONS AND PERFORM MAKE
2384	printf "\n\n *** compiling code if necessary...\n"
2385
2386	# workaround for batch jobs on local machine (lcxe6)
2387	if [[ $do_batch == true && $do_remote == false ]]
2388	then
2389	eval $init_cmds
2390	fi
2391
2392	# GET CHECK OPTIONS
2393	line=""
2394	found=false
2395
2396	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2397
2398	while read line1
2399	do
2400
2401	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2402	then
2403	line="$line1"
2404	fi
2405
2406	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2407	then
2408	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2409	line="$line "
2410	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2411	found=true
2412	fi
2413
2414	done < $tmp_check
2415	copts_check="$copts_check -D__check -D__parallel"
2416
2417	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2418
2419	# GET MAKE OUTPUT
2420	if [[ $? != 0 ]]
2421	then
2422	printf "\n +++ error during make."
2423	answer=dummy
2424	printf "\n\n"
2425	if [[ $silent == false ]]
2426	then
2427	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2428	do
2429	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2430	read answer
2431	done
2432	if [[ $answer = a \|\| $answer = A ]]
2433	then
2434	printf "\n +++ Aborting..."
2435	rm -rf $check_sources
2436	locat=normal; exit
2437	else
2438	skip_check=true
2439	fi
2440	else
2441	skip_check=true
2442	fi
2443	fi
2444	else
2445	cp $PALM_BIN/check_namelist_files.x ./
2446	fi
2447
2448	cp $filename_input ./PARIN
2449	if [[ $check_restart == 1 ]]
2450	then
2451	cp $filenamef ./PARINF
2452	fi
2453
2454	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2455	then
2456	printf "\n *** adding topography data"
2457	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2458
2459	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2460	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2461	# WHICH REQUIRE SUFFICIENT MEMORY
2462	ulimit -s unlimited
2463	fi
2464
2465	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2466	cat > ENVPAR << %%END%%
2467	&envpar run_identifier = '$fname', host = '$host',
2468	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2469	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2470	maximum_cpu_time_allowed = ${cpumax}.,
2471	revision = '$global_revision',
2472	local_dvrserver_running = $local_dvrserver_running /
2473
2474	%%END%%
2475
2476	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2477	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2478	then
2479	printf "\n +++ WARNING: check_namelist_files.x not found."
2480	answer=dummy
2481	printf "\n\n"
2482
2483	if [[ $silent == false ]]
2484	then
2485	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2486	do
2487	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2488	read answer
2489	done
2490	if [[ $answer = a \|\| $answer = A ]]
2491	then
2492	printf "\n +++ Aborting..."
2493	rm -rf $check_sources
2494	locat=normal; exit
2495	else
2496	printf "\n *** skipping parameter file check."
2497	fi
2498	fi
2499
2500	elif [[ $skip_check == false ]]
2501	then
2502	# STARTING THE PARAMETER FILE CHECK
2503	printf "\n\n *** starting parameter file check..."
2504
2505	# CHECKING THE P3D FILE
2506	printf "\n\n (1) checking $filename_input"
2507	echo "$numprocs 0 0" > VARIN
2508	errors=`./check_namelist_files.x < VARIN 2>&1`
2509
2510	check_error=false
2511	if [[ "$errors" == "" ]]
2512	then
2513	printf " --> o.k."
2514	else
2515	printf " --> failed."
2516	check_error=true
2517	printf "\n\n $errors"
2518	fi
2519
2520	# CHECKING THE PD3F FILE IF NECESSARY
2521	if [[ $check_restart == 1 && $check_error == false ]]
2522	then
2523	printf "\n\n (2) checking $filenamef"
2524
2525	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2526	# IN &INIPAR LIST
2527	found=false
2528	cat PARINF \| while read line
2529	do
2530	line=$(echo $line\|sed 's/ //g')
2531	if [[ $line == "&inipar" ]]
2532	then
2533	start_search=true
2534	fi
2535
2536	if [[ $start_search == true ]]
2537	then
2538	if [[ $line == "initializing_actions='read_restart_data'" ]]
2539	then
2540	found=true
2541	break
2542	fi
2543	fi
2544
2545	if [[ $line == "/" ]]
2546	then
2547	start_search=false
2548	fi
2549
2550	done
2551
2552	if [[ $found = false ]]
2553	then
2554	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2555	printf "\n in &inipar list in $fname$p3df_suffix."
2556	rm -rf $check_sources
2557	locat=check_namelist; exit
2558	fi
2559
2560	# READ max_user_pr FROM FILES
2561	if [[ -f parin_for_check ]]
2562	then
2563	read max_pr_user < parin_for_check
2564	else
2565	max_user_pr=0
2566	fi
2567
2568	echo "$numprocs 1 $max_pr_user" > VARIN
2569	errors=`./check_namelist_files.x < VARIN 2>&1`
2570
2571	if [[ "$errors" == "" ]]
2572	then
2573	printf " --> o.k."
2574	else
2575	printf " --> failed."
2576	check_error=true
2577	printf "\n\n $errors"
2578	fi
2579	fi
2580
2581	# REPORT ERRORS AND CONTINUE/EXIT
2582	if [[ $check_error == true ]]
2583	then
2584	printf "\n +++ errors found in the parameter file!\n"
2585	answer=dummy
2586	printf "\n\n"
2587
2588	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2589	do
2590	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2591	read answer
2592	done
2593
2594	if [[ $answer = a \|\| $answer = A ]]
2595	then
2596	printf "\n +++ Aborting..."
2597	rm -rf $check_sources
2598	locat=normal; exit
2599	fi
2600	else
2601	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2602	fi
2603	rm -rf $check_sources
2604	fi
2605	else
2606	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2607	fi
2608
2609	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2610	rm -rf $check_sources
2611	cd $working_directory
2612
2613
2614	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2615	# CHENDE AKTIONEN DURCHGEFUEHRT
2616	if [[ $do_batch = false ]]
2617	then
2618
2619
2620	# TEMPORAEREN KATALOG ERZEUGEN
2621	mkdir -p $TEMPDIR
2622	chmod go+rx $TEMPDIR
2623	tmpcreate=true
2624
2625	# set striping on lustre file system
2626	# if [[ $localhost = lcsgih ]]
2627	# then
2628	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2629	# lfs getstripe $TEMPDIR
2630	# fi
2631
2632
2633	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2634	# TEMPORAERES VERZEICHNIS KOPIEREN
2635	if [[ $do_compile = true ]]
2636	then
2637
2638	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2639	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2640	if [[ $localhost = nech ]]
2641	then
2642	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2643	if mkdir -p $TEMPDIR_COMPILE
2644	then
2645	printf "\n *** \"$TEMPDIR_COMPILE\" "
2646	printf "\n is generated as temporary directory for cross compiling\n"
2647	else
2648	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2649	printf "\n needed for cross compilation failed"
2650	locat=compile
2651	exit
2652	fi
2653	else
2654	TEMPDIR_COMPILE=$TEMPDIR
2655	fi
2656
2657
2658	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2659	line=""
2660	grep "%depository_path" $config_file > tmp_mrun
2661	while read line
2662	do
2663	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2664	then
2665	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2666	then
2667	global_depository_path=`echo $line \| cut -d" " -s -f2`
2668	fi
2669	fi
2670	done < tmp_mrun
2671
2672	line=""
2673	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2674	while read line
2675	do
2676	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2677	then
2678	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2679	then
2680	local_depository_path=`echo $line \| cut -d" " -s -f2`
2681	fi
2682	fi
2683	done < tmp_mrun
2684
2685	if [[ "$local_depository_path" = "" ]]
2686	then
2687	if [[ "$global_depository_path" != "" ]]
2688	then
2689	local_depository_path=$global_depository_path
2690	else
2691	printf "\n\n +++ no depository path found in configuration file"
2692	printf "\n for local host \"$localhost\" "
2693	printf "\n please set \"\%depository_path\" in configuration file\n"
2694	locat=config_file; exit
2695	fi
2696	fi
2697	eval local_depository_path=$local_depository_path
2698	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2699	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2700
2701
2702	basename=`echo $mainprog \| cut -f1 -d"."`
2703	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2704	if [[ ! -f $make_depository ]]
2705	then
2706	printf "\n"
2707	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2708	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2709	else
2710	cp $make_depository $TEMPDIR_COMPILE
2711	cd $TEMPDIR_COMPILE
2712	tar -xf $make_depository > /dev/null 2>&1
2713	cd - > /dev/null
2714	fi
2715
2716	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2717
2718	else
2719
2720	cp $executable ${TEMPDIR}/a.out
2721
2722	fi
2723
2724
2725	# WECHSEL IN TEMPORAEREN KATALOG
2726	cd $TEMPDIR
2727	printf "\n *** changed to temporary directory: $TEMPDIR"
2728
2729
2730	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2731	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2732	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2733	# ERMITTELN
2734	(( i = 0 ))
2735	while (( i < iout ))
2736	do
2737	(( i = i + 1 ))
2738	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2739	then
2740	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2741	else
2742	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2743	fi
2744	done
2745
2746
2747	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2748	if [[ $do_compile = true ]]
2749	then
2750
2751
2752	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2753	printf "\n\n\n *** compilation starts \n$striche\n"
2754	printf " *** compilation with make using following options:\n"
2755	printf " make depository: $make_depository"
2756	if [[ "$mopts" != "" ]]
2757	then
2758	printf " make options: $mopts\n"
2759	fi
2760	printf " compilername: $compiler_name\n"
2761	printf " compiler options: $fopts\n"
2762	printf " preprocessor directives: $cpp_options \n"
2763	printf " linker options: $lopts \n"
2764	if [[ "$modules" != "" ]]
2765	then
2766	printf " modules to be load: $modules \n"
2767	fi
2768	printf " source code files: $source_list \n"
2769
2770	if [[ $localhost = nech ]]
2771	then
2772	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2773	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2774	cp $TEMPDIR_COMPILE/a.out .
2775	[[ $? != 0 ]] && compile_error=true
2776	rm -rf $TEMPDIR_COMPILE
2777	elif [[ $localhost = ibmh ]]
2778	then
2779	printf " compiler is called via ssh on \"plogin1\" \n"
2780	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2781	[[ ! -f a.out ]] && compile_error=true
2782	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2783	elif [[ $localhost = lcsgib ]]
2784	then
2785	printf " compiler is called via ssh on \"bicegate0\" \n"
2786	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2787	[[ ! -f a.out ]] && compile_error=true
2788	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2789	elif [[ $localhost = lcsgih ]]
2790	then
2791	printf " compiler is called via ssh on \"hicegate0\" \n"
2792	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2793	[[ ! -f a.out ]] && compile_error=true
2794	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2795	elif [[ $localhost = lcflow ]]
2796	then
2797	printf " compiler is called via ssh on \"flow\" \n"
2798	ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2799	[[ ! -f a.out ]] && compile_error=true
2800	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2801	else
2802	[[ "$init_cmds" != "" ]] && eval $init_cmds
2803	[[ "$module_calls" != "" ]] && eval $module_calls
2804	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2805
2806	fi
2807
2808	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2809	then
2810	printf "\n +++ error occured while compiling or linking"
2811	locat=compile
2812
2813	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2814	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2815	# then
2816	exit
2817	# else
2818	# locat=normal
2819	# fi
2820	else
2821	printf "$striche\n *** compilation finished \n"
2822	fi
2823	fi
2824
2825
2826	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2827	if [[ $local_compile = true ]]
2828	then
2829	cd $HOME
2830	rm -rf $TEMPDIR
2831	locat=local_compile; exit
2832	fi
2833
2834
2835	# BEREITSTELLEN DER INPUT-DATEIEN
2836	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2837	(( i = 0 ))
2838	while (( i < iin ))
2839	do
2840	(( i = i + 1 ))
2841	if (( i == 1 ))
2842	then
2843	printf "\n\n *** providing INPUT-files:\n$striche"
2844	fi
2845
2846
2847	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2848	if [[ "${transin[$i]}" = unavailable ]]
2849	then
2850	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2851	then
2852	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2853	printf "\n is not available!"
2854	else
2855	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2856	printf "\n is not available!"
2857	fi
2858	continue
2859	fi
2860
2861	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2862	files_for_pes=false; datentyp=file
2863	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2864	then
2865	files_for_pes=true; datentyp=directory
2866	actionin[$i]=""
2867	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2868	then
2869	actionin[$i]=""
2870	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2871	then
2872	files_for_pes=true; datentyp=directory
2873	actionin[$i]="ar"
2874	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2875	then
2876	actionin[$i]="ar"
2877	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2878	then
2879	files_for_pes=true; datentyp=directory
2880	actionin[$i]="fl"
2881	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2882	then
2883	actionin[$i]="fl"
2884	fi
2885
2886	if [[ $files_for_pes = true ]]
2887	then
2888	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2889	else
2890	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2891	fi
2892
2893	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2894	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2895	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2896	# SERVER ZU HOLEN
2897	if [[ "${actionin[$i]}" = fl ]]
2898	then
2899	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2900	if [[ $files_for_pes = false ]]
2901	then
2902	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2903	then
2904	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2905	got_tmp[$i]=true
2906	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2907	then
2908	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2909	printf "\n *** trying to use backup copy in \"$WORK\" "
2910	cp $WORK/${frelin[$i]} ${localin[$i]}
2911	else
2912	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2913	printf "\n or \"$tmp_data_catalog\" does not exist!"
2914	printf "\n *** trying to get copy from archive"
2915	actionin[$i]=ar
2916	fi
2917	else
2918	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2919	then
2920	mkdir ${localin[$i]}
2921	cd $tmp_data_catalog/${frelin[$i]}
2922	for file in $(ls *)
2923	do
2924	ln $file $TEMPDIR/${localin[$i]}
2925	done
2926	cd $TEMPDIR
2927	got_tmp[$i]=true
2928	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2929	then
2930	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2931	printf "\n *** trying to use backup copy in \"$WORK\" "
2932	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2933	else
2934	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2935	printf "\n or \"$tmp_data_catalog\" does not exist!"
2936	printf "\n *** trying to get copy from archive"
2937	actionin[$i]=ar
2938	fi
2939	fi
2940	fi
2941
2942
2943	# DATEI LIEGT AUF ARCHIV-SERVER
2944	if [[ "${actionin[$i]}" = ar ]]
2945	then
2946
2947	if [[ $files_for_pes = false ]]
2948	then
2949	printf "\n file will be restored from archive-system ($archive_system)!"
2950	else
2951	printf "\n directory will be restored from archive-system ($archive_system)!"
2952	fi
2953
2954	file_restored=false
2955
2956	if [[ $archive_system = asterix ]]
2957	then
2958	do_stagein=true
2959	(( stagein_anz = 0 ))
2960	while [[ $do_stagein = true ]]
2961	do
2962	if [[ $files_for_pes = false ]]
2963	then
2964	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2965	else
2966	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2967	fi
2968	cat STAGEIN_OUTPUT
2969	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2970	then
2971	file_restored=true
2972	do_stagein=false
2973	else
2974	(( stagein_anz = stagein_anz + 1 ))
2975	if (( stagein_anz == 10 ))
2976	then
2977	printf "\n +++ stagein stoped after 10 tries"
2978	locat=stage
2979	exit
2980	fi
2981	printf "\n +++ restoring from archive failed, trying again:"
2982	sleep 900
2983	fi
2984	done
2985	elif [[ $archive_system = DMF ]]
2986	then
2987	if [[ $files_for_pes = false ]]
2988	then
2989	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2990	locat=DMF
2991	exit
2992	else
2993	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2994	cp -r $ARCHIVE/${frelin[$i]} $PWD
2995	file_restored=true
2996	fi
2997	elif [[ $archive_system = tivoli ]]
2998	then
2999	if [[ $files_for_pes = false ]]
3000	then
3001	if [[ $localhost = lcsgih ]]
3002	then
3003	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3004	else
3005	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3006	fi
3007	else
3008	(( inode = 0 ))
3009	while (( inode < nodes ))
3010	do
3011	if [[ $localhost = lcsgih ]]
3012	then
3013	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3014	else
3015	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3016	fi
3017	(( inode = inode + 1 ))
3018	done
3019	fi
3020	file_restored=true
3021	elif [[ $archive_system = ut ]]
3022	then
3023	if [[ $files_for_pes = false ]]
3024	then
3025	cp $UT/${frelin[$i]} .
3026	else
3027	(( inode = 0 ))
3028	while (( inode < nodes ))
3029	do
3030	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3031	(( inode = inode + 1 ))
3032	done
3033	fi
3034	file_restored=true
3035	else
3036	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3037	locat=rearchive
3038	exit
3039	fi
3040
3041	if [[ $file_restored = true ]]
3042	then
3043
3044	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3045	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3046	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3047	if [[ $files_for_pes = false ]]
3048	then
3049	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3050	else
3051	mkdir $tmp_data_catalog/${frelin[$i]}
3052	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3053	fi
3054	got_tmp[$i]=true
3055
3056	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3057	mv ${frelin[$i]} ${localin[$i]}
3058
3059	fi
3060	fi
3061
3062
3063	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3064	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3065	then
3066
3067	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3068	then
3069
3070	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3071	printf "\n file will be provided for $numprocs processors"
3072	mkdir ${localin[$i]}
3073	ival=$numprocs
3074	(( ii = 0 ))
3075	while (( ii <= ival-1 ))
3076	do
3077	if (( ii < 10 ))
3078	then
3079	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3080	elif (( ii < 100 ))
3081	then
3082	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3083	elif (( ii < 1000 ))
3084	then
3085	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3086	else
3087	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3088	fi
3089	(( ii = ii + 1 ))
3090	done
3091
3092	else
3093
3094	if [[ $files_for_pes = true ]]
3095	then
3096
3097	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3098	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3099	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3100	# PER MOVE UMBENANNT WERDEN
3101	printf "\n providing $numprocs files for the respective processors"
3102	mkdir ${localin[$i]}
3103	if [[ $link_local_input = true ]]
3104	then
3105	printf " using ln -f\n"
3106	cd ${absnamein[$i]}
3107	for file in $(ls *)
3108	do
3109	ln -f $file ${localin[$i]}
3110	done
3111	cd $TEMPDIR
3112	fi
3113	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3114	if [[ ! -f "${localin[$i]}/_0000" ]]
3115	then
3116	if [[ $link_local_input = true ]]
3117	then
3118	printf " ln failed for .../_0000, using cp...\n"
3119	fi
3120	cp -r ${absnamein[$i]}/* ${localin[$i]}
3121	fi
3122
3123	else
3124	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3125	if [[ $link_local_input = true ]]
3126	then
3127	printf " using ln -f\n"
3128	ln -f ${absnamein[$i]} ${localin[$i]}
3129	fi
3130	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3131	if [[ ! -f "${localin[$i]}" ]]
3132	then
3133	if [[ $link_local_input = true ]]
3134	then
3135	printf " ln failed, using cp...\n"
3136	fi
3137	cp ${absnamein[$i]} ${localin[$i]}
3138	fi
3139	fi
3140	fi
3141	fi
3142
3143	done
3144	if (( i != 0 ))
3145	then
3146	printf "\n$striche\n *** all INPUT-files provided \n"
3147	fi
3148
3149
3150	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3151	(( i = 0 ))
3152	while (( i < iic ))
3153	do
3154	(( i = i + 1 ))
3155	if (( i == 1 ))
3156	then
3157	printf "\n\n *** execution of INPUT-commands:\n$striche"
3158	fi
3159	printf "\n >>> ${in_command[$i]}"
3160	eval ${in_command[$i]}
3161	if (( i == iic ))
3162	then
3163	printf "\n$striche\n"
3164	fi
3165	done
3166
3167
3168	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3169	cpurest=${cpumax}.
3170
3171
3172	# START DVR STREAMING SERVER
3173	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3174	then
3175	if [[ "$dvr_server" != "" ]]
3176	then
3177
3178	printf "\n\n *** preparing the dvr streaming server configuration file"
3179
3180	# Check, if a dvr server is already running
3181	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3182	if [[ "$running_dvrserver_id" != "" ]]
3183	then
3184
3185	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3186	printf "\n This server is used instead starting a new one!"
3187	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3188
3189	else
3190
3191	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3192	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3193	then
3194	cp ${PALM_BIN}/.dvrserver.config .
3195
3196	# Entering the BASEDIR, UID and GID into this file
3197	user_id=`id -u`
3198	group_id=`id -g`
3199	# & is needed as seperator, because TEMPDIR contains /
3200	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3201	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3202	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3203	mv .dvrserver.3 .dvrserver.config
3204	rm .dvrserver.1 .dvrserver.2
3205
3206	# Start dvr server in background, get his id and print on terminal
3207	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3208	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3209	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3210	local_dvrserver_running=.TRUE.
3211	else
3212	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3213	printf "\n \"$PALM_BIN\" "
3214	locat=dvr
3215	exit
3216	fi
3217
3218	fi
3219
3220	else
3221	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3222	fi
3223	fi
3224
3225
3226	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3227	# LESEN VON PALM)
3228	cat > ENVPAR << %%END%%
3229	&envpar run_identifier = '$fname', host = '$localhost',
3230	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3231	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3232	maximum_cpu_time_allowed = ${cpumax}.,
3233	revision = '$global_revision',
3234	local_dvrserver_running = $local_dvrserver_running /
3235
3236	%%END%%
3237
3238
3239	# PROGRAMMSTART
3240	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3241	PATH=$PATH:$TEMPDIR
3242
3243	# MPI debug option (argument checking, slows down execution due to increased latency)
3244	if [[ "$mpi_debug" = true ]]
3245	then
3246	export MPI_CHECK_ARGS=1
3247	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3248	fi
3249
3250	if [[ "$totalview" = true ]]
3251	then
3252	printf "\n *** totalview debugger will be used"
3253	tv_opt="-tv"
3254	else
3255	tv_opt=""
3256	fi
3257
3258	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3259	then
3260	if [[ "$ENVIRONMENT" = BATCH ]]
3261	then
3262	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3263	then
3264	printf "\n +++ debug is allowed in interactive mode only"
3265	locat=debug
3266	exit
3267	fi
3268	fi
3269	if [[ $localhost = ibmh ]]
3270	then
3271
3272	# SETUP THE IBM MPI ENVIRONMENT
3273	export MP_SHARED_MEMORY=yes
3274	export AIXTHREADS_SCOPE=S
3275	export OMP_NUM_THREADS=$threads_per_task
3276	export AUTHSTATE=files
3277	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3278
3279	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3280	export MP_ADAPTER_USE=shared
3281	export MP_CPU_USE=multiple
3282	export MP_TIMEOUT=1200
3283
3284	unset MP_TASK_AFFINITY
3285
3286	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3287	#(( ii = 1 ))
3288	#while (( ii <= $numprocs ))
3289	#do
3290	# echo $localhost_realname >> hostfile
3291	# (( ii = ii + 1 ))
3292	#done
3293	#export MP_HOSTFILE=hostfile
3294
3295	if [[ "$LOADLBATCH" = yes ]]
3296	then
3297	totalview poe a.out $ROPTS
3298	else
3299	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3300	export TVDSVRLAUNCHCMD=ssh
3301	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3302	fi
3303	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3304	then
3305	# CURRENTLY NO DEBUGGER ON LCSGI
3306	if [[ $run_coupled_model = true ]]
3307	then
3308	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3309	locat=debug
3310	exit
3311	else
3312	echo "no_coupling" > runfile_atmos
3313	fi
3314	(( ii = $numprocs / $threads_per_task ))
3315	export OMP_NUM_THREADS=$threads_per_task
3316	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3317	if [[ $threads_per_task != 1 ]]
3318	then
3319	printf "\n threads per task: $threads_per_task"
3320	fi
3321	printf "\n\n"
3322	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3323	then
3324	# export MPI_LAUNCH_TIMEOUT=360
3325	if [[ "$totalview" = true ]]
3326	then
3327	printf "\n running totalview debugger"
3328	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3329	else
3330	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3331	fi
3332	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3333	then
3334	# ulimit -s 300000 # A too large stack size causes problems
3335	# export MV2_NUM_PORTS=2
3336	# export MV2_CPU_MAPPING=0:1:2:3
3337	if [[ "$totalview" = true ]]
3338	then
3339	printf "\n running totalview debugger"
3340	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3341	else
3342	mpiexec ./a.out $ROPTS < runfile_atmos
3343	fi
3344	fi
3345	else
3346	printf "\n +++ no debug available on \"$localhost\" "
3347	printf "\n or not implemented in mrun so far"
3348	locat=debug
3349	exit
3350	fi
3351
3352	# end debug mode
3353	else
3354
3355	# normal execution
3356	if [[ -n $numprocs ]]
3357	then
3358	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3359	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3360	then
3361	# SETUP THE IBM MPI ENVIRONMENT
3362	if [[ $host != ibmh && $host != ibmkisti ]]
3363	then
3364	export MP_SHARED_MEMORY=yes
3365	export AIXTHREAD_SCOPE=S
3366	export OMP_NUM_THREADS=$threads_per_task
3367	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3368	export AUTHSTATE=files
3369	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3370	# export MP_PRINTENV=yes
3371
3372	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3373	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3374	export MP_WAIT_MODE=poll
3375	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3376	fi
3377
3378	if [[ $host = ibmkisti ]]
3379	then
3380	export LANG=en_US
3381	export MP_SHARED_MEMORY=yes
3382	if [[ $threads_per_task = 1 ]]
3383	then
3384	export MP_SINGLE_THREAD=yes
3385	export MEMORY_AFFINITY=MCM
3386	else
3387	export OMP_NUM_THREADS=$threads_per_task
3388	fi
3389	fi
3390
3391	if [[ "$LOADLBATCH" = yes ]]
3392	then
3393	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3394	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3395	then
3396	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3397	else
3398	if [[ $run_coupled_model = false ]]
3399	then
3400	if [[ "$ocean_file_appendix" = true ]]
3401	then
3402	echo "precursor_ocean" > runfile_atmos
3403	else
3404	echo "precursor_atmos" > runfile_atmos
3405	fi
3406	else
3407	(( iia = $numprocs_atmos / $threads_per_task ))
3408	(( iio = $numprocs_ocean / $threads_per_task ))
3409	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3410	printf "\n using $coupled_mode coupling"
3411	printf "\n\n"
3412	echo "coupled_run $iia $iio" > runfile_atmos
3413	fi
3414	poe ./a.out $ROPTS < runfile_atmos
3415	fi
3416	else
3417	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3418	then
3419	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3420	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3421	then
3422	if [[ -f $hostfile ]]
3423	then
3424	cp $hostfile hostfile
3425	else
3426	(( ii = 1 ))
3427	while (( ii <= $numprocs ))
3428	do
3429	echo $localhost_realname >> hostfile
3430	(( ii = ii + 1 ))
3431	done
3432	fi
3433	export MP_HOSTFILE=hostfile
3434	if [[ $run_coupled_model = false ]]
3435	then
3436	if [[ "$ocean_file_appendix" = true ]]
3437	then
3438	echo "precursor_ocean" > runfile_atmos
3439	else
3440	echo "precursor_atmos" > runfile_atmos
3441	fi
3442	else
3443	(( iia = $numprocs_atmos / $threads_per_task ))
3444	(( iio = $numprocs_ocean / $threads_per_task ))
3445	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3446	printf "\n using $coupled_mode coupling"
3447	printf "\n\n"
3448	echo "coupled_run $iia $iio" > runfile_atmos
3449	fi
3450	if [[ $localhost = ibmy ]]
3451	then
3452	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3453	else
3454	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3455	fi
3456
3457	else
3458	if [[ "$host_file" = "" ]]
3459	then
3460	printf "\n +++ no hostfile given in configuration file"
3461	locat=config_file
3462	exit
3463	else
3464	eval host_file=$host_file
3465	fi
3466	export MP_HOSTFILE=$host_file
3467	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3468	fi
3469	fi
3470	elif [[ $host = nech \|\| $host = necriam ]]
3471	then
3472	(( ii = nodes ))
3473	if [[ $ii = 1 ]]
3474	then
3475	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3476	export MPIPROGINF=YES
3477	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3478	echo "*** execution on single node with mpirun"
3479	mpirun -np $numprocs ./a.out $ROPTS
3480	else
3481	(( i = 0 ))
3482	while (( i < ii ))
3483	do
3484	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3485	(( i = i + 1 ))
3486	done
3487
3488	echo "#!/bin/sh" > mpi_exec_shell
3489	echo " " >> mpi_exec_shell
3490	echo "set -u" >> mpi_exec_shell
3491	echo "F_ERRCNT=0" >> mpi_exec_shell
3492	echo "MPIPROGINV=YES" >> mpi_exec_shell
3493	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3494	echo "cpurest=$cpurest" >> mpi_exec_shell
3495	echo "fname=$fname" >> mpi_exec_shell
3496	echo "localhost=$localhost" >> mpi_exec_shell
3497	echo "return_addres=$return_addres" >> mpi_exec_shell
3498	echo "return_username=$return_username" >> mpi_exec_shell
3499	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3500	echo "write_binary=$write_binary" >> mpi_exec_shell
3501	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3502	echo " " >> mpi_exec_shell
3503	echo "export F_ERRCNT" >> mpi_exec_shell
3504	echo "export MPIPROGINV" >> mpi_exec_shell
3505	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3506	echo "export cpurest" >> mpi_exec_shell
3507	echo "export fname" >> mpi_exec_shell
3508	echo "export localhost" >> mpi_exec_shell
3509	echo "export return_addres" >> mpi_exec_shell
3510	echo "export return_username" >> mpi_exec_shell
3511	echo "export tasks_per_node" >> mpi_exec_shell
3512	echo "export write_binary" >> mpi_exec_shell
3513	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3514	echo " " >> mpi_exec_shell
3515	echo "exec ./a.out" >> mpi_exec_shell
3516
3517	chmod u+x mpi_exec_shell
3518	export MPIPROGINF=YES
3519	mpirun -f multinode_config &
3520	wait
3521
3522	fi
3523	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3524	then
3525
3526	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3527	# DOES NOT EXIST
3528	if [[ $host != lcsgih && $host != lcsgib && $host != lckyu* ]]
3529	then
3530	if [[ -f $hostfile ]]
3531	then
3532	cp $hostfile hostfile
3533	(( ii = $numprocs / $threads_per_task ))
3534	else
3535	(( ii = 1 ))
3536	while (( ii <= $numprocs / $threads_per_task ))
3537	do
3538	echo $localhost_realname >> hostfile
3539	(( ii = ii + 1 ))
3540	done
3541	fi
3542	eval zeile=\"`head -n $ii hostfile`\"
3543	printf "\n *** running on: $zeile"
3544	fi
3545
3546	(( ii = $numprocs / $threads_per_task ))
3547	export OMP_NUM_THREADS=$threads_per_task
3548	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3549	if [[ $threads_per_task != 1 ]]
3550	then
3551	# increase stack size to unlimited, because large runs
3552	# may abort otherwise
3553	ulimit -Ss unlimited
3554	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3555	fi
3556	if [[ $run_coupled_model = false ]]
3557	then
3558	if [[ "$ocean_file_appendix" = true ]]
3559	then
3560	echo "precursor_ocean" > runfile_atmos
3561	else
3562	echo "precursor_atmos" > runfile_atmos
3563	fi
3564	printf "\n\n"
3565	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3566	then
3567	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3568	then
3569	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3570	# export MPI_DSM_DISTRIBUTE=1
3571	# MPI_DSM_CPULIST: pin MPI processes to cores
3572	if [[ $use_openmp = false ]]
3573	then
3574	if [[ "$sgi_feature" = ice2 ]]
3575	then
3576	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3577	else
3578	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3579	fi
3580	else
3581	unset MPI_DSM_CPULIST
3582	fi
3583	# MPI_IB_RAILS: use both IB rails on ICE2
3584	export MPI_BUFS_PER_HOST=512
3585	export MPI_IB_RAILS=2
3586	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3587	export MPI_CONNECTIONS_THRESHOLD=8192
3588	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3589	export MPI_TYPE_DEPTH=20
3590	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3591	export MPI_GROUP_MAX=64
3592	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3593	if [[ $use_openmp = true ]]
3594	then
3595	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3596	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3597	else
3598	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3599	fi
3600
3601	# next is test for openmp usage
3602	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3603	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3604	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3605	then
3606	export MV2_NUM_PORTS=2
3607	# The default setting of MV2_CPU_MAPPING gives best results
3608	# export MV2_ENABLE_AFFINITY=1
3609	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3610	# if [[ "$sgi_feature" = ice2 ]]
3611	# then
3612	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3613	# else
3614	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3615	# fi
3616	if [[ $use_openmp = true ]]
3617	then
3618	unset MV2_CPU_MAPPING
3619	export MV2_ENABLE_AFFINITY=0
3620	fi
3621	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3622	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3623	if [[ $use_openmp = true ]]
3624	then
3625	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3626	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3627	else
3628	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3629	fi
3630	elif [[ "$mpilib" = impi ]]
3631	then
3632	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3633	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3634	fi
3635	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3636	then
3637	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3638	elif [[ $host = lcflow ]]
3639	then
3640	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3641	elif [[ $host = lcsb ]]
3642	then
3643	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3644	elif [[ $host = lckiaps ]]
3645	then
3646	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3647	elif [[ $host = lckyu* ]]
3648	then
3649	mpiexec -n $ii ./a.out < runfile_atmos $ROPTS
3650	else
3651	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3652	fi
3653	else
3654
3655	# currently there is no full MPI-2 support on ICE and XT4
3656	(( iia = $numprocs_atmos / $threads_per_task ))
3657	(( iio = $numprocs_ocean / $threads_per_task ))
3658	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3659	printf "\n using $coupled_mode coupling"
3660	printf "\n\n"
3661
3662	if [[ $coupled_mode = "mpi2" ]]
3663	then
3664	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3665	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3666	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3667	then
3668
3669	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3670	then
3671	# export MPI_LAUNCH_TIMEOUT=360
3672	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3673	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3674	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3675	then
3676	# ulimit -s 300000 # A too large stack size causes problems
3677	# export MV2_NUM_PORTS=2
3678	# export MV2_CPU_MAPPING=0:1:2:3
3679	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3680	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3681	fi
3682
3683	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3684	then
3685
3686	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3687	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3688
3689	else
3690	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3691	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3692	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3693	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3694	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3695	fi
3696	wait
3697
3698	else
3699
3700	echo "coupled_run $iia $iio" > runfile_atmos
3701	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3702	then
3703
3704	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3705	then
3706	# export MPI_LAUNCH_TIMEOUT=360
3707	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3708	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3709	then
3710	# ulimit -s 300000 # A too large stack size causes problems
3711	# export MV2_NUM_PORTS=2
3712	# export MV2_CPU_MAPPING=0:1:2:3
3713	mpiexec ./a.out $ROPTS < runfile_atmos
3714	fi
3715
3716	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3717	then
3718
3719	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3720
3721	elif [[ $host = lck \|\| $host = lckordi ]]
3722	then
3723	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3724	fi
3725	wait
3726	fi
3727
3728	fi
3729	elif [[ $host = lckyoto ]]
3730	then
3731	set -xv
3732	export P4_RSHCOMMAND=plesh
3733	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3734	if [[ "$ENVIRONMENT" = BATCH ]]
3735	then
3736	if [[ "$cond2" = fujitsu ]]
3737	then
3738	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3739	elif [[ "cond2" = pgi ]]
3740	then
3741	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3742	else
3743	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3744	fi
3745	else
3746	if [[ "$cond2" = "" ]]
3747	then
3748	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3749	else
3750	mpirun -np $numprocs ./a.out $ROPTS
3751	fi
3752	fi
3753	set +xv
3754	elif [[ $host = lctit ]]
3755	then
3756	export OMP_NUM_THREADS=$threads_per_task
3757	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3758	if [[ "$threads_per_task" != 1 ]]
3759	then
3760	export MV2_ENABLE_AFFINITY=0
3761	fi
3762	echo "----- PBS_NODEFILE content:"
3763	cat $PBS_NODEFILE
3764	echo "-----"
3765	(( ii = $numprocs / $threads_per_task ))
3766	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3767	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3768	else
3769	mpprun -n $numprocs a.out $ROPTS
3770	fi
3771	[[ $? != 0 ]] && execution_error=true
3772
3773
3774	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3775	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3776	then
3777	apprentice
3778	fi
3779	else
3780	a.out $ROPTS
3781	fi
3782	fi
3783	if [[ $? != 0 \|\| $execution_error = true ]]
3784	then
3785
3786	# ABBRUCH BEI LAUFZEITFEHLER
3787	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3788	printf "\n +++ runtime error occured"
3789	locat=execution
3790	exit
3791	else
3792	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3793	printf "\n$striche\n *** execution finished \n"
3794
3795	# Stop the dvr streaming server and process the dvr output in order
3796	# to create dvrs- and html-files containing all streams
3797	if [[ "$dvrserver_id" != "" ]]
3798	then
3799	kill $dvrserver_id
3800	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3801
3802	# If there is a directory, data have been output by the
3803	# streaming server. Otherwise, user has chosen dvrp_output=local
3804	if [[ -d DATA_DVR ]]
3805	then
3806
3807	# Add the current dvr configuration file to the dvr output
3808	# directory
3809	cp .dvrserver.config DATA_DVR
3810
3811	# Process the dvr output (option -s for also generating
3812	# sequence mode data)
3813	process_dvr_output -d DATA_DVR -f $fname -s
3814
3815	else
3816
3817	# Process the local output
3818	process_dvr_output -l -d DATA_DVR -f $fname
3819
3820	fi
3821
3822	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3823	then
3824
3825	# Process dvr output generated in local mode (dvrp_output=local)
3826	process_dvr_output -l -d DATA_DVR -f $fname
3827
3828	fi
3829	fi
3830
3831
3832
3833	# Call of combine_plot_fields in order to merge single files written
3834	# by each PE into one file.
3835	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3836	then
3837	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3838	printf "\n 2d- and/or 3d-data may be incomplete!"
3839	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3840	elif [[ "$combine_plot_fields" == true ]]
3841	then
3842	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3843	combine_plot_fields${block}.x
3844	else
3845	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3846	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3847	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3848	fi
3849
3850
3851
3852	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3853	(( i = 0 ))
3854	while (( i < ioc ))
3855	do
3856	(( i = i + 1 ))
3857	if (( i == 1 ))
3858	then
3859	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3860	fi
3861	printf "\n >>> ${out_command[$i]}"
3862	eval ${out_command[$i]}
3863	if (( i == ioc ))
3864	then
3865	printf "\n$striche\n"
3866	fi
3867	done
3868
3869
3870	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3871	if [[ $do_trace = true ]]
3872	then
3873	printf "\n\n"
3874	ls -al
3875	fi
3876
3877
3878
3879	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3880	(( i = 0 ))
3881	while (( i < iout ))
3882	do
3883	(( i = i + 1 ))
3884	if (( i == 1 ))
3885	then
3886	printf "\n\n *** saving OUTPUT-files:\n$striche"
3887	fi
3888
3889	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3890	files_for_pes=false; filetyp=file
3891	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3892	then
3893	files_for_pes=true; filetyp=directory
3894	actionout[$i]=""
3895	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3896	then
3897	actionout[$i]=""
3898	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3899	then
3900	files_for_pes=true; filetyp=directory
3901	actionout[$i]="ar"
3902	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3903	then
3904	actionout[$i]="ar"
3905	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3906	then
3907	files_for_pes=true; filetyp=directory
3908	actionout[$i]="fl"
3909	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3910	then
3911	actionout[$i]="fl"
3912	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3913	then
3914	files_for_pes=true; filetyp=directory
3915	actionout[$i]="tr"
3916	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3917	then
3918	actionout[$i]="tr"
3919	fi
3920
3921	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3922	then
3923	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3924	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3925	then
3926	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3927	else
3928
3929
3930	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3931	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3932	# REMOTE-RECHNUNGEN
3933	if [[ "${actionout[$i]}" = tr ]]
3934	then
3935	if [[ $localhost != $fromhost ]]
3936	then
3937	if [[ $files_for_pes = false ]]
3938	then
3939	cps=""
3940	cst=""
3941	else
3942	cps=-c
3943	cst="/"
3944	fi
3945	if [[ $localhost = nech ]]
3946	then
3947
3948	# TRANSFER IN EIGENSTAENDIGEM JOB
3949	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3950	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3951	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3952	if [[ $files_for_pes = false ]]
3953	then
3954	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3955	else
3956	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3957	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3958	fi
3959
3960	echo "set -x" > transfer_${localout[$i]}
3961	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3962
3963	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3964	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3965	printf "\n or higher cycle\n"
3966	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3967
3968	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3969
3970	if [[ $localhost = nech ]]
3971	then
3972	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
3973	else
3974	if [[ "$LOGNAME" = b323013 ]]
3975	then
3976	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3977	else
3978	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
3979	fi
3980	fi
3981
3982	else
3983
3984	# TRANSFER INNERHALB DIESES JOBS
3985	transfer_failed=false
3986	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3987	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3988	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3989	[[ $? != 0 ]] && transfer_failed=true
3990
3991	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3992	# LOKALER MASCHINE ANLEGEN
3993	if [[ $transfer_failed = true ]]
3994	then
3995	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3996	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3997
3998	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3999	# ANLEGEN.
4000	eval local_catalog=${pathout[$i]}
4001	if [[ ! -d $local_catalog ]]
4002	then
4003	printf " *** local directory does not exist. Trying to create:\n"
4004	printf " $local_catalog \n"
4005	mkdir -p $local_catalog
4006	fi
4007	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4008	transfer_problems=true
4009	fi
4010	fi
4011	else
4012
4013	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4014	actionout[$i]=""
4015	fi
4016	fi
4017
4018
4019	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4020	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4021	# REMOTE-RECHNUNGEN
4022	if [[ "${actionout[$i]}" = tra ]]
4023	then
4024	if [[ $localhost != $fromhost ]]
4025	then
4026	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4027	then
4028
4029	# TRANSFER IN EIGENSTAENDIGEM JOB
4030	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4031	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4032	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4033	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4034
4035	echo "set -x" > transfer_${localout[$i]}
4036	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4037
4038	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4039	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4040	printf "\n or higher cycle\n"
4041	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4042
4043	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4044
4045	if [[ $localhost = nech ]]
4046	then
4047	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4048	else
4049	if [[ $LOGNAME = b323013 ]]
4050	then
4051	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4052	else
4053	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4054	fi
4055	fi
4056
4057	else
4058
4059	# TRANSFER INNERHALB DIESES JOBS
4060	transfer_failed=false
4061	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4062	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4063	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4064	[[ $? != 0 ]] && transfer_failed=true
4065
4066	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4067	# LOKALER MASCHINE ANLEGEN
4068	if [[ $transfer_failed = true ]]
4069	then
4070	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4071	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4072
4073	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4074	# ANLEGEN
4075	eval local_catalog=${pathout[$i]}
4076	if [[ ! -d $local_catalog ]]
4077	then
4078	printf " *** local directory does not exist. Trying to create:\n"
4079	printf " $local_catalog \n"
4080	mkdir -p $local_catalog
4081	fi
4082
4083	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4084	transfer_problems=true
4085	fi
4086	fi
4087	else
4088
4089	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4090	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4091	actionout[$i]=a
4092	fi
4093	fi
4094
4095
4096	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4097	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4098	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4099	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4100	if [[ "${actionout[$i]}" = fl ]]
4101	then
4102	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4103	chmod g+rx $tmp_data_catalog
4104	if [[ $files_for_pes = false ]]
4105	then
4106	printf "\n >>> OUTPUT: ${localout[$i]} to"
4107	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4108	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4109	else
4110	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4111	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4112	mkdir $tmp_data_catalog/${frelout[$i]}
4113	cd ${localout[$i]}
4114	for file in $(ls *)
4115	do
4116	ln -f $file $tmp_data_catalog/${frelout[$i]}
4117	done
4118	cd $TEMPDIR
4119	fi
4120
4121
4122	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4123	if [[ $store_on_archive_system = true ]]
4124	then
4125
4126	if [[ $archive_system = asterix ]]
4127	then
4128	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4129	if [[ $files_for_pes = false ]]
4130	then
4131	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4132	else
4133	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4134	fi
4135	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4136	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4137	echo "then" >> archive_${frelout[$i]}
4138	echo " do_stageout=false" >> archive_${frelout[$i]}
4139	echo "else" >> archive_${frelout[$i]}
4140	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4141	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4142	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4143	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4144	if [[ $files_for_pes = false ]]
4145	then
4146	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4147	else
4148	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4149	fi
4150	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4151	echo "fi" >> archive_${frelout[$i]}
4152	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4153	elif [[ $archive_system = DMF ]]
4154	then
4155	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4156	if [[ $files_for_pes = false ]]
4157	then
4158	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4159	locat=DMF
4160	exit
4161	else
4162	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4163	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4164	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4165	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4166	fi
4167	elif [[ $archive_system = tivoli ]]
4168	then
4169	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4170	if [[ $files_for_pes = false ]]
4171	then
4172	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4173	echo "set -x" >> archive_${frelout[$i]}
4174	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4175	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4176	else
4177
4178	echo "set -x" >> archive_${frelout[$i]}
4179	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4180	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4181	cd $tmp_data_catalog
4182	all_files=`ls -1 ${frelout[$i]}/*`
4183	cd - > /dev/null
4184	(( inode = 0 ))
4185	(( tp1 = tasks_per_node + 1 ))
4186	while (( inode < nodes ))
4187	do
4188	# echo "*** all_files = \"$all_files\" "
4189	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4190	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4191	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4192	# echo "*** files = \"$files\" "
4193	# echo "*** all_files = \"$all_files\" "
4194	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4195	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4196	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4197	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4198	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4199	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4200	(( inode = inode + 1 ))
4201	done
4202	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4203	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4204	fi
4205	elif [[ $archive_system = ut ]]
4206	then
4207	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4208	if [[ $files_for_pes = false ]]
4209	then
4210	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4211	echo "set -x" >> archive_${frelout[$i]}
4212	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4213	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4214	else
4215
4216	echo "set -x" >> archive_${frelout[$i]}
4217	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4218	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4219	cd $tmp_data_catalog
4220	all_files=`ls -1 ${frelout[$i]}/*`
4221	cd - > /dev/null
4222	(( inode = 0 ))
4223	(( tp1 = tasks_per_node + 1 ))
4224	while (( inode < nodes ))
4225	do
4226	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4227	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4228	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4229	(( inode = inode + 1 ))
4230	done
4231	fi
4232	elif [[ $archive_system = none ]]
4233	then
4234	printf " +++ archiving on $localhost not available!\n"
4235	fi
4236
4237	if [[ $archive_system != none ]]
4238	then
4239	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4240	then
4241	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4242	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4243	elif [[ $localhost = nech ]]
4244	then
4245	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4246	fi
4247	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4248	fi
4249	else
4250	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4251	fi
4252
4253
4254	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4255	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4256	if [[ $files_for_pes = false ]]
4257	then
4258	cat /dev/null > ${pathout[$i]}
4259	else
4260	mkdir -p ${pathout[$i]}
4261	fi
4262
4263	fi
4264
4265
4266	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4267	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4268	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4269	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4270	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4271	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4272	if [[ "${actionout[$i]}" = ar ]]
4273	then
4274	if [[ $files_for_pes = false ]]
4275	then
4276	printf "\n >>> OUTPUT: ${localout[$i]} to"
4277	printf "\n ${pathout[$i]}"
4278	printf "\n File will be copied to archive-system ($archive_system) !\n"
4279	else
4280	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4281	printf "\n ${pathout[$i]}"
4282	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4283	fi
4284	mv ${localout[$i]} ${frelout[$i]}
4285
4286	file_saved=false
4287
4288	if [[ $archive_system = asterix ]]
4289	then
4290	do_stageout=true
4291	(( stageout_anz = 0 ))
4292	while [[ $do_stageout = true ]]
4293	do
4294	if [[ $files_for_pes = false ]]
4295	then
4296	stageout ${frelout[$i]} > STAGE_OUTPUT
4297	else
4298	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4299	fi
4300	cat STAGE_OUTPUT
4301	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4302	then
4303	file_saved=true
4304	do_stageout=false
4305	else
4306	if [[ $files_for_pes = false ]]
4307	then
4308	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4309	else
4310	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4311	fi
4312	(( stageout_anz = stageout_anz + 1 ))
4313	if (( stageout_anz == 10 ))
4314	then
4315	printf "\n +++ stoped after 10 unsuccessful tries!"
4316	archive_save=false
4317	do_stageout=false
4318	else
4319	printf "\n *** new try to store on archive after 15 min:"
4320	sleep 900
4321	fi
4322	fi
4323	done
4324	elif [[ $archive_system = DMF ]]
4325	then
4326	if [[ $files_for_pes = false ]]
4327	then
4328	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4329	locat=DMF
4330	exit
4331	else
4332	rm -rf $ARCHIVE/${frelout[$i]}
4333	cp -r ${frelout[$i]} $ARCHIVE
4334	fi
4335	file_saved=true
4336	elif [[ $archive_system = tivoli ]]
4337	then
4338	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4339	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4340	# GELEGT WERDEN
4341	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4342	chmod g+rx $tmp_data_catalog
4343	if [[ $files_for_pes = false ]]
4344	then
4345	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4346	else
4347	mkdir $tmp_data_catalog/${frelout[$i]}
4348	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4349	fi
4350
4351	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4352	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4353	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4354	if [[ $files_for_pes = false ]]
4355	then
4356	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4357	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4358	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4359	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4360	else
4361	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4362	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4363	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4364	fi
4365
4366	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4367	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4368	file_saved=true
4369
4370	elif [[ $archive_system = ut ]]
4371	then
4372	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4373	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4374	# GELEGT WERDEN
4375	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4376	chmod g+rx $tmp_data_catalog
4377	if [[ $files_for_pes = false ]]
4378	then
4379	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4380	else
4381	mkdir $tmp_data_catalog/${frelout[$i]}
4382	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4383	fi
4384
4385	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4386	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4387	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4388	if [[ $files_for_pes = false ]]
4389	then
4390	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4391	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4392	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4393	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4394	else
4395	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4396	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4397	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4398	fi
4399
4400	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4401	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4402	file_saved=true
4403
4404	else
4405	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4406	archive_save=false
4407	fi
4408	if [[ $file_saved = true ]]
4409	then
4410	if [[ $files_for_pes = false ]]
4411	then
4412	cat /dev/null > ${pathout[$i]}
4413	else
4414	mkdir -p ${pathout[$i]}
4415	fi
4416	fi
4417	fi
4418
4419	# APPEND AUF LOKALER MASCHINE
4420	if [[ "${actionout[$i]}" = "a" ]]
4421	then
4422	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4423	then
4424	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4425	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4426	else
4427	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4428	cat ${localout[$i]} >> ${pathout[$i]}
4429	fi
4430	fi
4431
4432	# KOPIEREN AUF LOKALER MASCHINE
4433	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4434	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4435	then
4436
4437	# KOPIEREN AUF EINPROZESSORMASCHINE
4438	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4439	then
4440	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4441	if [[ $link_local_output = true ]]
4442	then
4443	printf " using ln -f\n"
4444	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4445	fi
4446	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4447	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4448	then
4449	if [[ $link_local_output = true ]]
4450	then
4451	printf " ln failed, using cp...\n"
4452	fi
4453	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4454	fi
4455	else
4456	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4457	if [[ $link_local_output = true ]]
4458	then
4459	printf " using ln -f\n"
4460	ln -f ${localout[$i]} ${pathout[$i]}
4461	fi
4462	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4463	if [[ ! -f "${pathout[$i]}" ]]
4464	then
4465	if [[ $link_local_output = true ]]
4466	then
4467	printf " ln failed, using cp...\n"
4468	fi
4469	cp ${localout[$i]} ${pathout[$i]}
4470	fi
4471	fi
4472
4473	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4474	then
4475
4476	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4477	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4478	# WIRD DANN KOPIERT
4479	# PER MOVE UMBENANNT WERDEN
4480	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4481	if [[ $link_local_output = true ]]
4482	then
4483	printf " using ln -f\n"
4484	mkdir ${pathout[$i]}
4485	cd ${localout[$i]}
4486	for file in $(ls *)
4487	do
4488	ln -f $file ${pathout[$i]}
4489	done
4490	cd $TEMPDIR
4491	fi
4492	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4493	if [[ ! -f "${pathout[$i]}/_0000" ]]
4494	then
4495	if [[ $link_local_output = true ]]
4496	then
4497	printf " ln failed for .../_0000, using cp...\n"
4498	fi
4499	cp -r ${localout[$i]} ${pathout[$i]}
4500	fi
4501
4502	fi
4503	fi
4504	done
4505	if (( i != 0 ))
4506	then
4507	if [[ $transfer_problems = true ]]
4508	then
4509	printf "\n$striche\n *** OUTPUT-files saved"
4510	printf "\n +++ WARNING: some data transfers failed! \n"
4511	else
4512	printf "\n$striche\n *** all OUTPUT-files saved \n"
4513	fi
4514	fi
4515
4516
4517	# EVENTUELL FOLGEJOB STARTEN
4518	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4519	if [[ -f CONTINUE_RUN ]]
4520	then
4521
4522	if [[ $archive_save = true ]]
4523	then
4524
4525	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4526	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4527	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4528	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4529	# HANDEN
4530	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4531	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4532	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4533	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4534	then
4535	mc=`echo $mc \| sed 's/#/f/g'`
4536	fi
4537
4538
4539	# JOB STARTEN
4540	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4541	echo " $mc"
4542	printf "\n$striche\n"
4543	if [[ $localhost != $fromhost ]]
4544	then
4545
4546	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4547	then
4548	echo "*** ssh will be used to initiate restart-runs!"
4549	echo " return_addres=\"$return_addres\" "
4550	echo " return_username=\"$return_username\" "
4551	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4552	then
4553	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4554	else
4555	if [[ $localhost = ibmkisti ]]
4556	then
4557	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4558	else
4559	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4560	fi
4561	fi
4562	else
4563	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4564	locat=restart; exit
4565	fi
4566
4567	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4568	# DER AKTUELLE JOB ENDET
4569	if [[ $queue = special1q ]]
4570	then
4571	sleep 120
4572	else
4573	sleep 30
4574	fi
4575
4576	else
4577
4578	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4579	# RUFEN WERDEN, AUSSER AUF lcfimm
4580	cd $LOCAL_PWD
4581	if [[ $localhost = lcfimm ]]
4582	then
4583	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4584	elif [[ $localhost = lckyuh ]]
4585	then
4586	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4587	printf "\n please restart job manually using command:\n"
4588	printf "\n \"$mc\" "
4589	else
4590	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4591	fi
4592	cd - > /dev/null
4593	fi
4594	if [[ $localhost = lckyuh ]]
4595	then
4596	printf "\n$striche\n *** restart-run to be initiated manually\n"
4597	else
4598	printf "\n$striche\n *** restart-run initiated \n"
4599	fi
4600
4601
4602	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4603	# GEHOLT WORDEN SIND, LOESCHEN
4604	(( i = 0 ))
4605	while (( i < iin ))
4606	do
4607	(( i = i + 1 ))
4608	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4609	then
4610	rm -r $tmp_data_catalog/${frelin[$i]}
4611	fi
4612	done
4613
4614	else
4615
4616	printf "\n +++ no restart-run possible, since errors occured"
4617	printf "\n during the archive process"
4618	fi
4619
4620	fi
4621
4622
4623
4624	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4625	if [[ "$email_notification" != "none" ]]
4626	then
4627
4628	if [[ $localhost != $fromhost ]]
4629	then
4630	if [[ -f CONTINUE_RUN ]]
4631	then
4632	echo "PALM restart run necessary" > email_text
4633	echo "description header of actual run:" >> email_text
4634	cat CONTINUE_RUN >> email_text
4635	echo "mrun-command to restart:" >> email_text
4636	echo "$mc" >> email_text
4637	else
4638	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4639	fi
4640	mail $email_notification < email_text
4641	printf "\n *** email notification sent to \"$email_notification\" "
4642	fi
4643	fi
4644
4645
4646
4647	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4648	cd $HOME
4649	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4650
4651	else
4652
4653
4654	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4655	# CHENDE AKTIONEN DURCHGEFUEHRT
4656
4657	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4658	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4659	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4660	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4661	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4662	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4663	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4664	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4665	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4666	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4667	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4668	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4669	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4670	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4671	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4672	if [[ $use_openmp = true ]]
4673	then
4674	mrun_com=${mrun_com}" -O $threads_per_task"
4675	fi
4676	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4677	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4678	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4679	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4680	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4681	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4682	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4683	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4684	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4685	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4686	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4687	if [[ $do_remote = true ]]
4688	then
4689	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4690	fi
4691
4692
4693	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4694	jobfile=jobfile.$RANDOM
4695
4696
4697	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4698	echo "mkdir $TEMPDIR" >> $jobfile
4699	echo "cd $TEMPDIR" >> $jobfile
4700
4701
4702	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4703	if [[ $do_trace = true ]]
4704	then
4705	echo "set -x" >> $jobfile
4706	else
4707	echo "set +vx" >> $jobfile
4708	fi
4709
4710
4711	# initialize the environment and load modules
4712	if [[ "$init_cmds" != "" ]]
4713	then
4714	echo "$init_cmds" >> $jobfile
4715	fi
4716	if [[ "$module_calls" != "" ]]
4717	then
4718	echo "$module_calls" >> $jobfile
4719	fi
4720
4721
4722	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4723	# DATEI FUER DEN JOB
4724	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4725	then
4726
4727	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4728	# KOPIEREN
4729	if [[ $restart_run != true ]]
4730	then
4731	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4732	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4733	fi
4734
4735	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4736	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4737	echo "set -x" >> $jobfile
4738	if [[ $host = $localhost ]]
4739	then
4740	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4741	else
4742	if [[ $host != ibmkisti ]]
4743	then
4744	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4745	else
4746	# on KISTI's IBM firewall is only opened on interactive node
4747	echo "localdir=\`pwd\`" >> $jobfile
4748	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4749	fi
4750	fi
4751	echo "export SOURCES_COMPLETE=true" >> $jobfile
4752
4753	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4754	# ARBEITSVERZEICHNIS VERSCHIEBEN
4755	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4756	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4757	echo "execute_mrun=true" >> $jobfile
4758	echo " " >> $jobfile
4759
4760	else
4761
4762	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4763	# SOWIE GEGEBENENFALLS DES MAKEFILES
4764	if [[ $do_compile = true ]]
4765	then
4766
4767	source_catalog=SOURCES_FOR_RUN_$fname
4768
4769	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4770	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4771	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4772	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4773	echo "export SOURCES_COMPLETE=true" >> $jobfile
4774	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4775
4776	for filename in $source_list
4777	do
4778	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4779	echo "cat > $filename << \"%END%\"" >> $jobfile
4780	cat $source_catalog/$filename >> $jobfile
4781	echo " " >> $jobfile
4782	echo "%END%" >> $jobfile
4783	echo " " >> $jobfile
4784	done
4785
4786	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4787	echo "cat > Makefile << \"%END%\"" >> $jobfile
4788	cat $source_catalog/Makefile >> $jobfile
4789	echo " " >> $jobfile
4790	echo "%END%" >> $jobfile
4791	echo " " >> $jobfile
4792
4793	echo "cd - > /dev/null" >> $jobfile
4794
4795	fi
4796
4797
4798	# ABSPEICHERN DER KONFIGURATIONSDATEI
4799	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4800	# Lines with #$ coming from the svn keyword substitution are
4801	# removed from the config file in order to avoid problems
4802	# with the SGE batch system
4803	echo "cat > $config_file << \"%END%\"" >> $jobfile
4804	if [[ $host = lckyuh ]]
4805	then
4806	# no cross compiler on compute node
4807	sed 's/frtpx/frt/g' $config_file >> $jobfile
4808	else
4809	sed 's/#$.*//g' $config_file >> $jobfile
4810	fi
4811	echo "%END%" >> $jobfile
4812	echo " " >> $jobfile
4813
4814
4815	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4816	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4817	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4818	if [[ $host = lckyuh ]]
4819	then
4820	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
4821	else
4822	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4823	fi
4824	echo "%END%" >> $jobfile
4825	echo "chmod u+x $mrun_script_name" >> $jobfile
4826	echo "execute_mrun=true" >> $jobfile
4827	echo " " >> $jobfile
4828
4829	fi
4830
4831
4832	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4833	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4834	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4835	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4836	if [[ $do_remote = true ]]
4837	then
4838	(( i = 0 ))
4839	while (( i < iin ))
4840	do
4841	(( i = i + 1 ))
4842	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4843	if [[ "${transin[$i]}" = job ]]
4844	then
4845	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4846	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4847	echo " " >> $jobfile
4848	echo "%END%" >> $jobfile
4849	else
4850	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4851	fi
4852
4853	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4854	echo "if [[ \$? = 1 ]]" >> $jobfile
4855	echo "then" >> $jobfile
4856	echo " echo \" \" " >> $jobfile
4857	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4858	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4859	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4860	echo " execute_mrun=false" >> $jobfile
4861	echo "fi" >> $jobfile
4862	done
4863	fi
4864
4865	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4866	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4867	echo "LOCAL_PWD=$working_directory" >> $jobfile
4868	echo "export LOCAL_PWD" >> $jobfile
4869
4870	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4871	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4872	echo "export LOCAL_MRUN_PATH" >> $jobfile
4873
4874	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4875	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4876	then
4877	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4878	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
4879	then
4880	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
4881	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
4882	fi
4883
4884	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4885	echo "set -x" >> $jobfile
4886	echo "queue=$queue" >> $jobfile
4887	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4888	echo 'ls -al; echo `pwd`' >> $jobfile
4889	echo "cd \$HOME" >> $jobfile
4890	echo "rm -rf $TEMPDIR" >> $jobfile
4891
4892
4893
4894
4895	# JOB PER SUBJOB STARTEN
4896	if [[ $silent = false ]]
4897	then
4898	printf "\n "
4899	else
4900	printf "\n\n"
4901	fi
4902
4903	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
4904	rm -rf $jobfile
4905
4906
4907	fi # ENDE REMOTE-TEIL
4908
4909
4910
4911	# ENDE DER PROZEDUR

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