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source: palm/trunk/SCRIPTS/mrun @ 1068

Last change on this file since 1068 was 1059, checked in by raasch, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# -----------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1059 2012-11-21 07:07:54Z maronga $
29	#
30	# 1058 2012-11-21 07:00:35Z raasch
31	# Intel inspector (inspxe) is given the number of PEs instead of the number of
32	# nodes
33	#
34	# 1046 2012-11-09 14:38:45Z maronga
35	# code put under GPL (PALM 3.9)
36	#
37	# 21/03/94 - Siggi - first version (1.0)
38	# 03/03/94 - Siggi - start with developing the script
39	#--------------------------------------------------------------------------------#
40
41
42
43	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
44
45	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
46	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
47	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
48
49	AddFilenames=""
50	additional_conditions=""
51	add_source_path=""
52	afname=""
53	archive_save=true
54	archive_system=none
55	check_namelist_files=true
56	combine_plot_fields=true
57	compiler_name=""
58	cond1=""
59	cond2=""
60	config_file=.mrun.config
61	coupled_dist=""
62	coupled_mode="mpi1"
63	cpp_opts=""
64	cpp_options=""
65	cpumax=0
66	cpurest=0
67	delete_temporary_catalog=true
68	do_batch=false
69	do_compile=true
70	do_remote=false
71	do_stagein=true
72	do_stageout=true
73	do_trace=false
74	email_notification="none"
75	exclude=""
76	executable=""
77	execution_error=false
78	fimm=false
79	fname=test
80	fromhost=""
81	global_revision=""
82	group_number=none
83	host=""
84	host_file=""
85	hp=""
86	ignore_archive_error=false
87	input_list=""
88	interpreted_config_file=""
89	job_catalog="~/job_queue"
90	job_on_file=""
91	keep_data_from_previous_run=false
92	link_local_input=false
93	link_local_output=false
94	localhost_realname=$(hostname)
95	local_compile=false
96	local_dvrserver_running=.FALSE.
97	locat=normal
98	mainprog=""
99	makefile=""
100	max_par_io_str=""
101	mc=$0
102	while [[ $(echo $mc \| grep -c "/") != 0 ]]
103	do
104	mc=`echo $mc \| cut -f2- -d"/"`
105	done
106	module_calls=""
107	mrun_script_name=$mc
108	netcdf_inc=""
109	netcdf_lib=""
110	netcdf_support=false
111	node_usage=default
112	numprocs=""
113	numprocs_atmos=0
114	numprocs_ocean=0
115	OOPT=""
116	openmp=false
117	output_list=""
118	package_list=""
119	punkte="..........................................................."
120	queue=none
121	read_from_config=""
122	restart_run=false
123	if [[ `hostname` = rte10 ]]
124	then
125	return_addres=133.5.185.60
126	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
127	elif [[ `hostname` = climate0 ]]
128	then
129	return_addres=165.132.26.68
130	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
131	elif [[ `hostname` = urban00 ]]
132	then
133	return_addres=147.46.30.151
134	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
135	else
136	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
137	fi
138	return_password=""
139	return_username=$LOGNAME
140	remotecall=false
141	remote_username=""
142	run_coupled_model=false
143	run_mode=""
144	scirocco=false
145	store_on_archive_system=false
146	striche=" ----------------------------------------------------------------------------"
147	silent=false
148	source_list=""
149	source_path=SOURCE
150	tasks_per_node=""
151	threads_per_task=1
152	tmpcreate=false
153	tmp_data_catalog=""
154	transfer_problems=false
155	usern=$LOGNAME
156	use_openmp=false
157	working_directory=`pwd`
158	TOPT=""
159	XOPT=""
160	zeit=$( date \| cut -c 12-19 )
161
162	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
163	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
164
165	typeset -R30 calltime
166	typeset -L20 spalte1
167	typeset -L40 spalte2
168	typeset -L60 spalte3
169	typeset -L35 string1=`date`
170	typeset -L12 string2=$usern
171	typeset -L12 string3=$localhost_realname
172	typeset -L12 string4
173	typeset -L12 string5
174	typeset -L30 version="MRUN 2.0 Rev$Rev: 1059 $"
175
176
177
178	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
179	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
180
181	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
182	# EXPORTIERT WERDEN
183	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
184	export group_number input_list memory numprocs output_list queue run_mode
185
186
187
188	# FEHLERBEHANDLUNG
189	# BEI EXIT:
190	trap 'rm -rf $working_directory/tmp_mrun
191	if [[ $locat != localhost ]]
192	then
193	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
194	# then
195	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
196	#MRUN-calls on $localhost
197	#
198	#date and time user localhost remotehost termination mrun-command
199	#--------------------------------------------------------------------------------------------------------------------
200	#%STATEND%
201	# chmod 666 ${mrun_path}/statistik/mrun_statistik
202	# fi
203	#
204	# # EINTRAG IN DIE STATISTIK-DATEI
205	# string4=$host
206	# string5=$locat
207	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
208	# then
209	# if [[ $do_batch = true ]]
210	# then
211	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
212	# else
213	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
214	# fi
215	# fi
216	echo " " > /dev/null
217	fi
218
219	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
220	then
221
222	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
223	(( i = 0 ))
224	while (( i < iec ))
225	do
226	(( i = i + 1 ))
227	printf "\n *** Execution of ERROR-command:\n"
228	printf " >>> ${err_command[$i]}\n"
229	eval ${err_command[$i]}
230	done
231	if [[ -n $interpreted_config_file ]] then
232	rm -rf $interpreted_config_file
233	fi
234	if [[ -n .mrun_environment ]] then
235	rm -rf .mrun_environment
236	fi
237	if [[ $tmpcreate = true ]]
238	then
239	printf "\n *** Contents of \"$TEMPDIR\":\n"
240	ls -al; cd
241	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
242	fi
243	if [[ "$dvrserver_id" != "" ]]
244	then
245	echo "+++ killing dvrserver_id=$dvrserver_id"
246	kill $dvrserver_id
247	fi
248	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
249	then
250	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
251	fi
252	printf "\n\n+++ MRUN killed \n\n"
253	elif [[ $locat != control_c ]]
254	then
255	printf "\n\n --> all actions finished\n\n"
256	printf " Bye, bye $usern !!\n\n"
257	fi' exit
258
259
260	# BEI TERMINAL-BREAK:
261	trap 'rm -rf $working_directory/tmp_mrun
262	rm -rf $working_directory/tmp_check_namelist_files
263	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
264	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
265	then
266	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
267	fi
268	if [[ "$dvrserver_id" != "" ]]
269	then
270	echo "+++ killing dvrserver_id=$dvrserver_id"
271	kill $dvrserver_id
272	fi
273	printf "\n+++ MRUN killed by \"^C\" \n\n"
274	locat=control_c
275	exit
276	' 2
277
278
279	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
280	# BEEN SET
281	if [[ "$PALM_BIN" = "" ]]
282	then
283	printf "\n +++ environment variable PALM_BIN has not been set"
284	printf "\n please set it to the directory where the PALM scripts are located"
285	locat=palm_bin; exit
286	fi
287	export PATH=$PALM_BIN:$PATH
288
289
290
291	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
292	# FUER FOLGEJOBS BENOETIGT WIRD
293	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
294	do
295	case $option in
296	(a) afname=$OPTARG;;
297	(A) store_on_archive_system=true; mc="$mc -A";;
298	(b) do_batch=true; mc="$mc -b";;
299	(B) delete_temporary_catalog=false; mc="$mc -B";;
300	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
301	(C) restart_run=true; mc="$mc -C";;
302	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
303	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
304	(F) job_on_file="-D"; mc="$mc -F";;
305	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
306	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
307	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
308	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
309	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
310	(I) ignore_archive_error=true; mc="$mc -I";;
311	(k) keep_data_from_previous_run=true; mc="$mc -k";;
312	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
313	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
314	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
315	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
316	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
317	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
318	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
319	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
320	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
321	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
322	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
323	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
324	(S) read_from_config=false; mc="$mc -S";;
325	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
326	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
327	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
328	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
329	(v) silent=true; mc="$mc -v";;
330	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
331	(x) do_trace=true;set -x; mc="$mc -x";;
332	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
333	(y) ocean_file_appendix=true; mc="$mc -y";;
334	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
335	(z) check_namelist_files=false; mc="$mc -z";;
336	(Z) combine_plot_fields=false; mc="$mc -Z";;
337	(\?) printf "\n +++ unknown option $OPTARG \n"
338	printf "\n --> type \"$0 ?\" for available options \n"
339	locat=parameter;exit;;
340	esac
341	done
342
343
344	# EVTL. POSITIONSPARAMETER EINLESEN
345	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
346	shift OPTIND-1
347
348
349	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
350	if [[ "$1" = "?" ]]
351	then
352	(printf "\n *** mrun can be called as follows:\n"
353	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
354	printf "\n Description of available options:\n"
355	printf "\n Option Description Default-Value"
356	printf "\n -a base name of input files equiv. -d"
357	printf "\n -A archiving when using file-attribute fl"
358	printf "\n -b batch-job on local machine ---"
359	printf "\n -B do not delete temporary directory at end ---"
360	printf "\n -c configuration file .mrun.config"
361	printf "\n -d base name of files attached to program test"
362	printf "\n -D preprocessor(cpp)-directives \"\" "
363	printf "\n -F create remote job file only ---"
364	printf "\n -h execution host $localhost_realname"
365	printf "\n -i INPUT control list \"\" "
366	printf "\n -I archiving errors of previous batch-jobs"
367	printf "\n will be ignored"
368	printf "\n -k keep data from previous run"
369	printf "\n -K additional conditions for controling"
370	printf "\n usage of conditional code and"
371	printf "\n env-variables in configuration file \"\" "
372	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
373	printf "\n -M Makefile name Makefile"
374	printf "\n -n node usage (shared/not_shared) depending on -h"
375	printf "\n -o OUTPUT control list \"\" "
376	printf "\n -O use OpenMP ---"
377	printf "\n -p software package list \"\" "
378	printf "\n -q queue \"$queue\" "
379	printf "\n -r run control list (combines -i -o) \"\" "
380	printf "\n -s filenames of routines to be compiled \"\" "
381	printf "\n must end with .f, .f90, .F, or .c !"
382	printf "\n use \"..\" for more than one file and wildcards"
383	printf "\n -s LM compiles all locally modified files"
384	printf "\n -S config file interpreted by shellscript ---"
385	printf "\n -t allowed cpu-time in seconds (batch) 0"
386	printf "\n -T tasks per node depending on -h"
387	printf "\n -u username on remote machine \"\" "
388	printf "\n -v no prompt for confirmation ---"
389	printf "\n -w maximum parallel io streams as given by -X"
390	printf "\n -x tracing of mrun for debug purposes ---"
391	printf "\n -X # of processors (on parallel machines) 1"
392	printf "\n -y add appendix \"_O\" to all local output"
393	printf "\n files (ocean precursor runs followed by"
394	printf "\n coupled atmosphere-ocean runs) ---"
395	printf "\n -Y run coupled model, \"#1 #2\" with"
396	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
397	printf "\n -z disable a priori parameter file check ---"
398	printf "\n -Z skip combine_plot_fields at the end of "
399	printf "\n the simulation ---"
400	printf "\n "
401	printf "\n Possible values of positional parameter <modus>:"
402	printf "\n \"?\" - this outline \n\n") \| more
403	exit
404	elif [[ "$1" != "" ]]
405	then
406	printf "\n +++ positional parameter $1 unknown \n"
407	locat=parameter; exit
408	fi
409
410
411
412	# KURZE STARTMELDUNG
413	printf "\n*** $version "
414	printf "\n will be executed. Please wait ..."
415
416
417
418	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
419	if [[ ! -f $config_file ]]
420	then
421	printf "\n\n +++ configuration file: "
422	printf "\n $config_file"
423	printf "\n does not exist"
424	locat=connect; exit
425	fi
426
427
428	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
429	line=""
430	grep "%host_identifier" $config_file > tmp_mrun
431	while read line
432	do
433	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
434	then
435	HOSTNAME=`echo $line \| cut -d" " -s -f2`
436	host_identifier=`echo $line \| cut -d" " -s -f3`
437	if [[ $localhost_realname = $HOSTNAME ]]
438	then
439	localhost=$host_identifier
440	break
441	fi
442	fi
443	done < tmp_mrun
444
445	if [[ "$localhost" = "" ]]
446	then
447	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
448	printf "\n for local host \"$localhost_realname\"."
449	printf "\n Please add line"
450	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
451	printf "\n to the configuration file."
452	locat=localhost; exit
453	fi
454
455
456	# HOSTSPEZIFISCHE VARIABLEN SETZEN
457	case $localhost_realname in
458	(r1\|r2\|h01\|b01) archive_system=tivoli;;
459	(cs*) archive_system=ut;;
460	(fimm.bccs.uib.no) fimm=true;;
461	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
462	(scirocco) scirocco=true;;
463	esac
464
465
466
467	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
468	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
469	[[ "$afname" = "" ]] && afname=$fname
470
471
472	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
473	if [[ "$run_mode" != "" ]]
474	then
475	input_list="$input_list $run_mode"
476	output_list="$output_list $run_mode"
477	fi
478
479
480	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
481	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
482	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
483	# STARTET)
484	if [[ "$fromhost" = "" ]]
485	then
486	fromhost=$localhost
487	fi
488
489
490	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
491	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
492	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
493	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
494	if [[ -n $host && "$host" != $localhost ]]
495	then
496	do_batch=true
497	do_remote=true
498	case $host in
499	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
500	(*) printf "\n"
501	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
502	printf "\n is not available"
503	locat=nqs; (( iec = 0 )); exit;;
504	esac
505	else
506	host=$localhost
507	fi
508
509
510	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
511	if [[ -n $additional_conditions ]]
512	then
513	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
514	cond1=`echo $additional_conditions \| cut -d" " -f1`
515	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
516	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
517	if [[ -n $dummy ]]
518	then
519	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
520	locat=options; exit
521	fi
522	block=_$cond1
523	[[ -n $cond2 ]] && block=${block}_$cond2
524	fi
525
526
527	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
528	if [[ $run_coupled_model = true ]]
529	then
530
531	if [[ -n $coupled_dist ]]
532	then
533
534	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
535	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
536
537	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
538	then
539
540	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
541	printf "\n PEs (total) : $numprocs"
542	printf "\n PEs (atmosphere): $numprocs_atmos"
543	printf "\n PEs (ocean) : $numprocs_ocean"
544	locat=coupling; exit
545
546	fi
547
548	else
549
550	(( numprocs_ocean = $numprocs / 2 ))
551	(( numprocs_atmos = $numprocs / 2 ))
552
553	fi
554	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
555
556	# GET coupled_mode FROM THE CONFIG FILE
557	line=""
558	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
559	while read line
560	do
561	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
562	then
563	coupled_mode="mpi2"
564	fi
565	done < tmp_mrun
566
567	fi
568
569
570	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
571	# ARCHIVIERUNG FEHLGESCHLAGEN IST
572	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
573	then
574	if [[ $ignore_archive_error = false ]]
575	then
576	printf "\n +++ data archiving of previous run failed"
577	printf "\n see directory \~/job_queue on remote machine"
578	locat=archive; exit
579	else
580	printf "\n +++ warning: data archiving in a previous run failed"
581	printf "\n MRUN continues, trying to get backup copy"
582	fi
583	fi
584
585
586
587	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
588	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
589	if [[ "$read_from_config" = false ]]
590	then
591
592	[[ $silent = false ]] && printf "\n Reading the configuration file... "
593	while read zeile
594	do
595	[[ $silent = false ]] && printf "."
596
597
598	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
599	# ERSETZEN
600	eval zeile=\"$zeile\"
601
602
603	# INTERPRETATION DER ZEILE
604	if [[ "$(echo $zeile)" = "" ]]
605	then
606	# LEERZEILE, KEINE AKTION
607	continue
608
609	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
610	then
611
612	# ZEILE IST KOMMENTARZEILE
613	true
614
615	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
616	then
617
618	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
619	zeile=$(echo $zeile \| cut -c2-)
620	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
621	var=`echo $zeile \| cut -d" " -f1`
622	value=`echo $zeile \| cut -d" " -s -f2`
623	for_host=`echo $zeile \| cut -d" " -s -f3`
624	for_cond1=`echo $zeile \| cut -d" " -s -f4`
625	for_cond2=`echo $zeile \| cut -d" " -s -f5`
626
627	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
628	then
629
630	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
631	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
632	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
633
634
635	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
636	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
637	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
638	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
639	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
640	# KONFIGURATIONSDATEI
641	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
642	then
643	eval $var=\$value
644
645	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
646	if [[ $do_trace = true ]]
647	then
648	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
649	fi
650	fi
651
652	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
653	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
654	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
655	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
656	if [[ $var = host ]]
657	then
658	if [[ -n $host && "$host" != $localhost ]]
659	then
660	do_batch=true
661	do_remote=true
662	case $host in
663	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
664	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
665	printf "\n is not available"
666	locat=nqs; exit;;
667	esac
668	else
669	host=$localhost
670	fi
671	fi
672
673	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
674	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
675	# DEN PROGRAMMEN BENOETIGT WERDEN
676	export $var
677	fi
678
679
680
681
682	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
683	then
684
685	# ZEILE DEFINIERT ERROR-KOMMANDO
686	(( iec = iec + 1 ))
687	zeile=$(echo $zeile \| cut -c4-)
688	err_command[$iec]="$zeile"
689
690	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
691	then
692
693	# ZEILE DEFINIERT INPUT-KOMMANDO
694	(( iic = iic + 1 ))
695	zeile=$(echo $zeile \| cut -c4-)
696	in_command[$iic]="$zeile"
697
698	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
699	then
700
701	# ZEILE DEFINIERT OUTPUT-KOMMANDO
702	(( ioc = ioc + 1 ))
703	zeile=$(echo $zeile \| cut -c4-)
704	out_command[$ioc]="$zeile"
705
706	else
707
708	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
709	# s2a: in/out - Feld
710	# s2b: loc - Feld (optional)
711	# s2c: tr/ar - Feld (optional)
712	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
713	s1=`echo $zeile \| cut -d" " -f1`
714	s2=`echo $zeile \| cut -d" " -s -f2`
715	s2a=$(echo $s2 \| cut -d":" -f1)
716	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
717	then
718	s2b=""
719	s2c=""
720	else
721	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
722	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
723	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
724	fi
725	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
726	s3=`echo $zeile \| cut -d" " -f3`
727	s4=`echo $zeile \| cut -d" " -s -f4`
728	s5=`echo $zeile \| cut -d" " -s -f5`
729	s6=`echo $zeile \| cut -d" " -s -f6`
730
731
732	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
733	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
734	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
735	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
736	# HANDEN SEIN MUSS (D.H. s2b = loc)
737	IFSALT="$IFS"; IFS="$IFS:"
738	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
739	then
740	found=false
741	for actual in $input_list
742	do
743	for formal in $s3
744	do
745	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
746	done
747	done
748	if [[ $found = true ]]
749	then
750	(( iin = iin + 1 ))
751	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
752	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
753	extin[$iin]=$s6
754	fi
755	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
756	then
757	found=false
758	for actual in $output_list
759	do
760	for formal in $s3
761	do
762	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
763	done
764	done
765	if [[ $found = true ]]
766	then
767	(( iout = iout + 1 ))
768	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
769	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
770	fi
771	elif [[ "$s2a" != in && "$s2a" != out ]]
772	then
773	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
774	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
775	locat=connect; exit
776	fi
777	IFS="$IFSALT"
778	fi
779	done < $config_file
780
781	else
782
783
784	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
785	[[ $silent = false ]] && printf "..."
786	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
787	export interpreted_config_file=.icf.$RANDOM
788
789
790
791	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
792	# VERFUEGUNG STELLEN
793	cat > .mrun_environment << %%END%%
794	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
795	config_file = '$config_file', do_remote = '$do_remote',
796	do_trace = '$do_trace', host = '$host',
797	input_list = '$input_list', icf = '$interpreted_config_file',
798	localhost = '$localhost', output_list = '$output_list' /
799
800	%%END%%
801
802	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
803	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
804	mrun_memory=$memory
805	mrun_group_number=$group_number
806	mrun_cpumax=$cpumax
807	mrun_numprocs=$numprocs
808
809	if [[ $localhost_realname = "sx-fep" ]]
810	then
811	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
812	else
813
814	if [[ "$host" != $localhost ]]
815	then
816
817	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
818	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
819	if [[ $? != 0 ]]
820	then
821	printf "\n\n +++ no interpret_config found"
822	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
823	locat=interpret_config; exit
824	fi
825	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
826	$interpret_config_executable
827
828	else
829
830	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
831	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
832	then
833	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
834	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
835	locat=interpret_config; exit
836	else
837	interpret_config${block}.x
838	fi
839
840	fi
841	fi
842	rm .mrun_environment
843
844
845	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
846	chmod u+x $interpreted_config_file
847	export PATH=$PATH:.
848	. $interpreted_config_file
849	rm $interpreted_config_file
850
851
852	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
853	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
854	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
855	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
856	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
857	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
858	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
859
860	fi
861
862
863	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
864	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
865	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
866	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
867	if [[ "$SOURCES_COMPLETE" = "" ]]
868	then
869
870	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
871	# VEREINBART WURDE
872	source_path=""
873	line=""
874	grep "%source_path" $config_file > tmp_mrun
875	while read line
876	do
877	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
878	then
879	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
880	then
881	global_source_path=`echo $line \| cut -d" " -f2`
882	fi
883	fi
884	done < tmp_mrun
885
886	line=""
887	found=false
888	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
889	while read line
890	do
891	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
892	then
893	if [[ $found = true ]]
894	then
895	printf "\n\n +++ more than one source path found in configuration file"
896	printf "\n for local host \"$localhost\" "
897	locat=source_path; exit
898	fi
899	source_path=`echo $line \| cut -d" " -f2`
900	found=true
901	fi
902	done < tmp_mrun
903	rm tmp_mrun
904
905	if [[ "$source_path" = "" ]]
906	then
907	if [[ "$global_source_path" != "" ]]
908	then
909	source_path=$global_source_path
910	else
911	printf "\n\n +++ no source path found in configuration file"
912	printf "\n for local host \"$localhost\" "
913	locat=source_path; exit
914	fi
915	fi
916	eval source_path=$source_path
917
918	if [[ ! -d $source_path ]]
919	then
920	printf "\n\n +++ source path \"$source_path\" on local host"
921	printf "\n \"$localhost\" does not exist"
922	locat=source_path; exit
923	fi
924
925	fi
926
927
928	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
929	# DURCH OPTION -G MITGETEILT)
930	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
931	then
932	global_revision=`svnversion $source_path 2>/dev/null`
933	global_revision="Rev: $global_revision"
934	fi
935
936
937	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
938	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
939	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
940	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
941	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
942	if [[ -n $host && "$host" != $localhost ]]
943	then
944	do_batch=true
945	do_remote=true
946	case $host in
947	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
948	(*) printf "\n"
949	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
950	printf "\n is not available"
951	locat=nqs; (( iec = 0 )); exit;;
952	esac
953	else
954	host=$localhost
955	fi
956
957
958	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
959	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
960	then
961
962	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
963	if [[ ! -n $numprocs ]]
964	then
965	printf "\n"
966	printf "\n +++ option \"-K parallel\" requires additional specification"
967	printf "\n of the number of processors to be used by"
968	printf "\n mrun-option \"-X\" or by environment-variable"
969	printf "\n \"numprocs\" in the configuration file"
970	locat=numprocs; (( iec = 0 )); exit
971	fi
972
973	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
974	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
975	# GESAMTPROZESSORANZAHL IST
976	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
977	then
978	printf "\n"
979	printf "\n +++ option \"-T\" (tasks per node) is missing"
980	printf "\n set -T option or define tasks_per_node in the config file"
981	locat=tasks_per_node; (( iec = 0 )); exit
982	fi
983	if [[ $host != lcflow && $host != lcxt5m ]]
984	then
985	(( ival = $tasks_per_node ))
986	(( pes = numprocs ))
987	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
988	# then
989	# (( pes = pes - 1 ))
990	# fi
991	(( ii = pes / ival ))
992	if (( pes - ii * ival > 0 ))
993	then
994	printf "\n"
995	printf "\n +++ tasks per node (option \"-T\") must be an integral"
996	printf "\n divisor of the total number of processors (option \"-X\")"
997	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
998	locat=tasks_per_node; (( iec = 0 )); exit
999	fi
1000	fi
1001
1002
1003	# IBMY HAT NUR EINEN KNOTEN
1004	if [[ $host = ibmy ]]
1005	then
1006	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1007	then
1008	printf "\n"
1009	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1010	printf "\n total number of processors (option \"-X\")"
1011	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1012	locat=tasks_per_node; (( iec = 0 )); exit
1013	fi
1014	fi
1015
1016
1017	# SETTINGS FOR SUBJOB-COMMAND
1018	TOPT="-T $tasks_per_node"
1019	OOPT="-O $threads_per_task"
1020
1021	# GESAMTZAHL DER KNOTEN BESTIMMEN
1022	if [[ "$tasks_per_node" != "" ]]
1023	then
1024	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1025	fi
1026
1027	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1028	# SETZEN
1029	if [[ $node_usage = default ]]
1030	then
1031	if [[ $host = ibms ]]
1032	then
1033	node_usage=shared
1034	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1035	then
1036	node_usage=singlejob
1037	else
1038	node_usage=not_shared
1039	fi
1040	fi
1041
1042	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1043	then
1044	printf "\n"
1045	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1046	printf "\n \"shared\" or \"not_shared\""
1047	locat=tasks_per_node; (( iec = 0 )); exit
1048	fi
1049
1050	fi
1051
1052	# PRUEFEN, OB HOSTFILE EXISTIERT
1053	if [[ -n $hostfile ]]
1054	then
1055	if [[ ! -f $hostfile ]]
1056	then
1057	printf "\n"
1058	printf "\n +++ hostfile \"$hostfile\" does not exist"
1059	locat=hostfile; exit
1060	fi
1061	fi
1062
1063	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1064	if [[ $host = ibmy && $do_remote = false ]]
1065	then
1066	if [[ ! -f $HOME/.rhosts ]]
1067	then
1068	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1069	printf "\n\n *** file:"
1070	printf "\n $HOME/.rhosts"
1071	printf "\n was created\n"
1072	fi
1073	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1074	then
1075	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1076	printf "\n\n *** file:"
1077	printf "\n $HOME/.rhosts"
1078	printf "\n was extended by the name of the current host\n"
1079	fi
1080	fi
1081
1082
1083	# Set default value for the maximum number of parallel io streams
1084	if [[ "$maximum_parallel_io_streams" = "" ]]
1085	then
1086	maximum_parallel_io_streams=$numprocs
1087	fi
1088
1089
1090	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1091	if [[ $queue = none ]]
1092	then
1093	case $host in
1094	(ibmh) queue=no_class;;
1095	(ibmkisti) queue=class.32plus;;
1096	(ibmy) queue=parallel;;
1097	(lckiaps) queue=normal;;
1098	(lckyoto) queue=ph;;
1099	(lcsgib) queue=testq;;
1100	(lcsgih) queue=testq;;
1101	(lctit) queue=S;;
1102	(nech) queue=none;;
1103	(necriam) queue=SP;;
1104	(unics) queue=unics;;
1105	esac
1106	fi
1107
1108
1109	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1110	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1111	# ERMITTELN
1112	(( i = 0 ))
1113	while (( i < iin ))
1114	do
1115	(( i = i + 1 ))
1116	(( maxcycle = 0 ))
1117
1118	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1119	if [[ "${actionin[$i]}" = di ]]
1120	then
1121	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1122	# REM-MASCHINE AUSWERTEN
1123	eval filename=${pathin[$i]}/${endin[$i]}
1124	else
1125	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1126	# REM-MASCHINE AUSWERTEN
1127	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1128	fi
1129	eval pathname=${pathin[$i]}
1130
1131	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1132	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1133	then
1134	filename_input=$filename
1135	fi
1136
1137	# PRUEFEN AUF VORHANDENSEIN
1138	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1139	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1140	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1141	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1142	then
1143	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1144	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1145	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1146	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1147	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1148	if [[ "${transin[$i]}" != "locopt" ]]
1149	then
1150	printf "\n\n +++ INPUT-file: "
1151	if [[ "${extin[$i]}" = "" ]]
1152	then
1153	printf "\n $filename"
1154	else
1155	printf "\n $filename.${extin[$i]}"
1156	fi
1157	printf "\n does not exist\n"
1158	locat=input; exit
1159	else
1160	transin[$i]="unavailable"
1161	fi
1162	else
1163
1164	# ZYKLUSNUMMER FESTSTELLEN
1165	ls -1 -d $filename > filelist 2>/dev/null
1166	ls -1 -d $filename.* >> filelist 2>/dev/null
1167	while read zeile
1168	do
1169	cycle=$(print $zeile \| cut -f2 -d".")
1170	if [[ "$cycle" = "$zeile" ]]
1171	then
1172	(( icycle = 0 ))
1173	elif [[ "$cycle" = "${extin[$i]}" ]]
1174	then
1175	(( icycle = 0 ))
1176	else
1177	(( icycle = $cycle ))
1178	fi
1179	if (( icycle > maxcycle ))
1180	then
1181	(( maxcycle = icycle ))
1182	file_to_be_used=$zeile
1183	fi
1184	done <filelist
1185	rm filelist
1186
1187	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1188	if (( maxcycle > 0 ))
1189	then
1190	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1191	then
1192	filename=${filename}.$maxcycle.${extin[$i]}
1193	else
1194	filename=${filename}.$maxcycle
1195	fi
1196	else
1197	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1198	then
1199	filename=${filename}.${extin[$i]}
1200	fi
1201	fi
1202
1203	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1204	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1205	absnamein[$i]=$filename
1206	if (( maxcycle > 0 ))
1207	then
1208	if [[ "${actionin[$i]}" = di ]]
1209	then
1210	frelin[$i]=${endin[$i]}.$maxcycle
1211	else
1212	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1213	fi
1214	else
1215	if [[ "${actionin[$i]}" = di ]]
1216	then
1217	frelin[$i]=${endin[$i]}
1218	else
1219	frelin[$i]=${afname}${endin[$i]}
1220	fi
1221	fi
1222
1223	fi
1224	done
1225
1226	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1227	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1228	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1229	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1230	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1231	(( i = 0 ))
1232	while (( i < iout ))
1233	do
1234	(( i = i + 1 ))
1235	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1236	then
1237	if [[ "${actionout[$i]}" = tr ]]
1238	then
1239	actionout[$i]=""
1240	elif [[ "${actionout[$i]}" = trpe ]]
1241	then
1242	actionout[$i]=pe
1243	elif [[ "${actionout[$i]}" = tra ]]
1244	then
1245	actionout[$i]=a
1246	fi
1247	(( maxcycle = 0 ))
1248	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1249	eval catalogname=${pathout[$i]}
1250	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1251	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1252	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1253	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1254	then
1255
1256	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1257	if cat /dev/null > $filename
1258	then
1259	rm $filename
1260	else
1261
1262	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1263	if [[ ! -d $catalogname ]]
1264	then
1265	if mkdir -p $catalogname
1266	then
1267	printf "\n\n *** directory:"
1268	printf "\n $catalogname"
1269	printf "\n was created\n"
1270	else
1271	printf "\n\n +++ OUTPUT-file:"
1272	printf "\n $filename"
1273	printf "\n cannot be created, because directory does not exist"
1274	printf "\n and cannot be created either"
1275	printf "\n"
1276	locat=output ; exit
1277	fi 2>/dev/null
1278	else
1279	printf "\n\n +++ OUTPUT-file:"
1280	printf "\n $filename"
1281	printf "\n cannot be created, although directory exists"
1282	printf "\n"
1283	locat=output ; exit
1284	fi
1285	fi 2>/dev/null
1286	else
1287
1288	# ZYKLUSNUMMER FESTSTELLEN
1289	ls -1 -d $filename > filelist 2>/dev/null
1290	ls -1 -d $filename.* >> filelist 2>/dev/null
1291	while read zeile
1292	do
1293	cycle=$(print $zeile \| cut -f2 -d".")
1294	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1295	then
1296	(( icycle = 1 ))
1297	else
1298	(( icycle = $cycle + 1 ))
1299	fi
1300	if (( icycle > maxcycle ))
1301	then
1302	(( maxcycle = icycle ))
1303	fi
1304	done <filelist
1305	rm filelist
1306	fi
1307
1308	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1309	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1310	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1311	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1312	if [[ "${actionout[$i]}" != a ]]
1313	then
1314	if (( maxcycle > 0 ))
1315	then
1316	filename=${filename}.$maxcycle
1317	if cat /dev/null > $filename
1318	then
1319	rm $filename
1320	else
1321	printf "\n +++ OUTPUT-file:"
1322	printf "\n $filename"
1323	printf "\n cannot be created"
1324	locat=output ; exit
1325	fi
1326	fi
1327	else
1328	(( maxcycle = maxcycle - 1 ))
1329	if (( maxcycle > 0 ))
1330	then
1331	filename=${filename}.$maxcycle
1332	fi
1333	fi
1334
1335	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1336	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1337	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1338	pathout[$i]=$filename
1339	if (( maxcycle > 0 ))
1340	then
1341	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1342	else
1343	frelout[$i]=${fname}${endout[$i]}
1344	fi
1345
1346	fi
1347	done
1348
1349
1350	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1351	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1352	then
1353	if [[ "$dvr_inc" = "" ]]
1354	then
1355	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1356	printf "\n This is required for the dvrp_graphics package.\n"
1357	locat=dvr; exit
1358	fi
1359	if [[ "$dvr_lib" = "" ]]
1360	then
1361	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1362	printf "\n This is required for the dvrp_graphics package.\n"
1363	locat=dvr; exit
1364	fi
1365	fi
1366
1367
1368	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1369	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1370	# UEBERSETZT ZU WERDEN)
1371	if [[ "$mainprog" = "" && "$executable" = "" ]]
1372	then
1373	printf "\n +++ neither main program nor executable defined"
1374	locat=source; exit
1375	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1376	then
1377	printf "\n +++ main program as well as executable defined"
1378	locat=source; exit
1379	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1380	then
1381	do_compile=false
1382	fi
1383
1384
1385	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1386	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1387	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1388	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1389	then
1390	rm -rf SOURCES_FOR_RUN_$fname
1391	mkdir SOURCES_FOR_RUN_$fname
1392	fi
1393
1394
1395	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1396	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1397	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1398	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1399	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1400	then
1401
1402	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1403
1404	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1405	then
1406
1407	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1408	source_list=""
1409	cd $source_path
1410
1411
1412	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1413	if [[ ! -d .svn ]]
1414	then
1415	printf "\n\n +++ source directory"
1416	printf "\n \"$source_path\" "
1417	printf "\n is not under control of \"subversion\"."
1418	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1419	fi
1420
1421
1422	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1423	Filenames=""
1424	svn status > tmp_mrun
1425	while read line
1426	do
1427	firstc=`echo $line \| cut -c1`
1428	if [[ $firstc = M \|\| $firstc = "?" ]]
1429	then
1430	Name=`echo "$line" \| cut -c8-`
1431	extension=`echo $Name \| cut -d. -f2`
1432	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1433	then
1434	Filenames="$Filenames "$Name
1435	fi
1436	fi
1437	done < tmp_mrun
1438
1439
1440	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1441	for dateiname in $Filenames
1442	do
1443	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1444	source_list=$source_list"$dateiname "
1445	done
1446
1447	cd - > /dev/null
1448
1449
1450	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1451	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1452	# VORHANDEN
1453	elif [[ "$source_list" != "" && $restart_run != true ]]
1454	then
1455
1456	cd $source_path
1457
1458	for filename in $source_list
1459	do
1460
1461	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1462	if [[ $(print $filename \| grep -c "/") != 0 ]]
1463	then
1464	printf "\n +++ source code file: $filename"
1465	printf "\n must not contain (\"/\") "
1466	locat=source; exit
1467	fi
1468
1469	if [[ ! -f $filename ]]
1470	then
1471	printf "\n +++ source code file: $filename"
1472	printf "\n does not exist"
1473	locat=source; exit
1474	else
1475	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1476	fi
1477
1478	done
1479
1480	cd - > /dev/null
1481
1482	fi
1483
1484
1485	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1486	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1487	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1488	if [[ $restart_run != true ]]
1489	then
1490
1491	if [[ ! -f "$source_path/$mainprog" ]]
1492	then
1493	printf "\n\n +++ main program: $mainprog"
1494	printf "\n does not exist in source directory"
1495	printf "\n \"$source_path\"\n"
1496	locat=source; exit
1497	else
1498	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1499	then
1500	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1501	source_list=${mainprog}" $source_list"
1502	fi
1503	fi
1504	fi
1505
1506
1507	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1508	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1509	if [[ "$restart_run" != true ]]
1510	then
1511	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1512	if [[ ! -f $makefile ]]
1513	then
1514	printf "\n +++ file \"$makefile\" does not exist"
1515	locat=make; exit
1516	else
1517	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1518	fi
1519	fi
1520
1521
1522	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1523	if [[ $restart_run != true && "$add_source_path" != "" ]]
1524	then
1525
1526	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1527	if [[ ! -d $add_source_path ]]
1528	then
1529	printf "\n\n +++ WARNING: additional source code directory"
1530	printf "\n \"$add_source_path\" "
1531	printf "\n does not exist or is not a directory."
1532	printf "\n No source code will be used from this directory!\n"
1533	add_source_path=""
1534	if [[ $silent == false ]]
1535	then
1536	sleep 3
1537	fi
1538	else
1539
1540	cd $add_source_path
1541	found=false
1542
1543	Names=$(ls -1 *.f90 2>&1)
1544	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1545	Names=$(ls -1 *.F90 2>&1)
1546	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1547	Names=$(ls -1 *.F 2>&1)
1548	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1549	Names=$(ls -1 *.f 2>&1)
1550	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1551	Names=$(ls -1 *.c 2>&1)
1552	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1553
1554	cd - > /dev/null
1555	cd SOURCES_FOR_RUN_$fname
1556
1557	# COPY MAKEFILE IF EXISTING
1558	if [[ -f $add_source_path/Makefile ]]
1559	then
1560	printf "\n\n *** user Makefile from directory"
1561	printf "\n \"$add_source_path\" is used \n"
1562	if [[ $silent == false ]]
1563	then
1564	sleep 1
1565	fi
1566	cp $add_source_path/Makefile .
1567	fi
1568
1569	for dateiname in $AddFilenames
1570	do
1571	if [[ -f $dateiname ]]
1572	then
1573	printf "\n +++ source code file \"$dateiname\" found in additional"
1574	printf "\n source code directory \"$add_source_path\" "
1575	printf "\n but was also given with option \"-s\" which means that it should be taken"
1576	printf "\n from directory \"$source_path\"."
1577	locat=source; exit
1578	fi
1579
1580	cp $add_source_path/$dateiname .
1581	source_list="$source_list $dateiname"
1582
1583	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1584	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1585	then
1586	printf "\n\n +++ user file \"$dateiname\" "
1587	printf "\n is not listed in Makefile \n"
1588	locat=source; exit
1589	else
1590
1591	# Default User-Interface von der Liste entfernen, falls Datei
1592	# ein User-Interface enthaelt
1593	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1594	# then
1595	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1596	# then
1597	# rm -rf user_interface.f90
1598	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1599	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1600	# printf "\n since a user-interface is found in file"
1601	# printf "\n \"$add_source_path/$dateiname\" \n"
1602	# sleep 3
1603	# else
1604	if [[ $found = false ]]
1605	then
1606	found=true
1607	printf "\n\n *** following user file(s) added to the"
1608	printf " files to be translated:\n "
1609	fi
1610	printf "$dateiname "
1611	if [[ $silent == false ]]
1612	then
1613	sleep 0.5
1614	fi
1615
1616	fi
1617	done
1618	[[ $found = true ]] && printf "\n"
1619	cd - > /dev/null
1620	fi
1621	fi
1622
1623
1624	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1625	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1626	if [[ $restart_run != true && -n $package_list ]]
1627	then
1628
1629	cd $source_path
1630
1631	for package in $package_list
1632	do
1633
1634	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1635
1636	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1637	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1638	# LIEFERT
1639	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1640
1641
1642	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1643	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1644	for source_list_name in $package_source_list
1645	do
1646	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1647	then
1648
1649	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1650	ending=`echo $source_list_name \| cut -f2 -d.`
1651	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1652	then
1653	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1654	source_list="$source_list $source_list_name"
1655	fi
1656	fi
1657	done
1658	done
1659
1660	cd - > /dev/null
1661	fi
1662
1663
1664	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1665	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1666	# if [[ "$restart_run" != true ]]
1667	# then
1668	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1669	# if [[ ! -f $makefile ]]
1670	# then
1671	# printf "\n +++ file \"$makefile\" does not exist"
1672	# locat=make; exit
1673	# else
1674	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1675	# fi
1676	# fi
1677
1678	fi # do_compile=true
1679
1680
1681	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1682	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1683	if [[ $do_compile = true ]]
1684	then
1685
1686	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1687	# ZUSAMMENSETZEN
1688	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1689	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1690	then
1691	cpp_options="${cpp_options},-D__ibm=__ibm"
1692	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1693	then
1694	cpp_options="$cpp_options -D__nec"
1695	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1696	then
1697	cpp_options="$cpp_options -D__lc"
1698	else
1699	cpp_options="$cpp_options -D__$localhost"
1700	fi
1701
1702	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1703	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1704	then
1705	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1706	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1707	else
1708	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1709	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1710	fi
1711
1712	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1713	if [[ -n $package_list ]]
1714	then
1715	for package in $package_list
1716	do
1717	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1718	then
1719	if [[ $package != "dvrp_graphics+1PE" ]]
1720	then
1721	cpp_options="${cpp_options},-D__$package=__$package"
1722	else
1723	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1724	export use_seperate_pe_for_dvrp_output=true
1725	fi
1726	else
1727	if [[ $package != "dvrp_graphics+1PE" ]]
1728	then
1729	cpp_options="$cpp_options -D__$package"
1730	else
1731	cpp_options="$cpp_options -D__dvrp_graphics"
1732	export use_seperate_pe_for_dvrp_output=true
1733	fi
1734	fi
1735	done
1736	fi
1737
1738	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1739	if [[ -n $cpp_opts ]]
1740	then
1741	for popts in $cpp_opts
1742	do
1743	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1744	then
1745	cpp_options="${cpp_options},-D__$popts=__$popts"
1746	else
1747	cpp_options="$cpp_options -D__$popts"
1748	fi
1749	done
1750	fi
1751
1752	else
1753
1754
1755	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1756	if [[ $do_remote = false ]]
1757	then
1758	if [[ ! -f $executable ]]
1759	then
1760	printf "\n +++ executable file: $executable"
1761	printf "\n does not exist"
1762	locat=executable; exit
1763	fi
1764	fi
1765	fi
1766
1767
1768	# JOBMODUS FESTSTELLEN
1769	if [[ "$ENVIRONMENT" = BATCH ]]
1770	then
1771	jobmo=BATCH
1772	else
1773	jobmo=INTERACTIVE
1774	fi
1775
1776
1777	# no interactive runs on lctit
1778	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1779	then
1780	printf "\n +++ no interactive runs allowed on host \"$host\" "
1781	printf "\n please submit batch job using mrun option \"-b\" \n"
1782	locat=normal; exit
1783	fi
1784
1785
1786	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1787	# DURCH BENUTZER ANDERWEITIG VEREINBART
1788	if [[ "$compiler_name" = "" ]]
1789	then
1790
1791	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1792	locat=compiler_name; exit
1793
1794	fi
1795
1796
1797	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1798	[[ $localhost = necriam ]] && compiler_name=mpif90
1799
1800
1801
1802	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1803	kennung=$RANDOM
1804	if [[ "$tmp_user_catalog" = "" ]]
1805	then
1806	if [[ $localhost = ibmh ]]
1807	then
1808	tmp_user_catalog=$SCRATCH
1809	elif [[ $localhost = nech ]]
1810	then
1811	tmp_user_catalog=$WRKSHR
1812	else
1813	tmp_user_catalog=/tmp
1814	fi
1815	fi
1816	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1817
1818
1819	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1820	# BESTIMMEN
1821	if [[ "$tmp_data_catalog" = "" ]]
1822	then
1823	if [[ $localhost = nech ]]
1824	then
1825	tmp_data_catalog=$WRKSHR/mrun_restart_data
1826	else
1827	tmp_data_catalog=/tmp/mrun_restart_data
1828	fi
1829	fi
1830
1831
1832	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1833	# ERSETZEN
1834	if [[ $do_remote = false && $do_compile = true ]]
1835	then
1836	eval fopts=\"$fopts\"
1837	eval lopts=\"$lopts\"
1838	fi
1839
1840
1841
1842	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1843	fopts="$fopts $netcdf_inc $dvr_inc"
1844	lopts="$lopts $netcdf_lib $dvr_lib"
1845	ROPTS="$ropts"
1846	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
1847	then
1848	XOPT="-X $numprocs"
1849	fi
1850
1851
1852
1853	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1854	# GRAMM BENOETIGT
1855	done=false
1856	while [[ $done = false ]]
1857	do
1858	cputime=$cpumax
1859	if (( $cputime == 0 ))
1860	then
1861	if [[ $do_batch = true ]]
1862	then
1863	printf "\n +++ cpu-time is undefined"
1864	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1865	printf "\n >>> "
1866	read cputime 1>/dev/null 2>&1
1867	else
1868	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1869	fi
1870	else
1871	done=true
1872	fi
1873	cpumax=$cputime
1874	done
1875
1876	(( minuten = cputime / 60 ))
1877	(( sekunden = cputime - minuten * 60 ))
1878
1879
1880	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1881	if [[ $do_batch = true ]]
1882	then
1883	done=false
1884	while [[ $done = false ]]
1885	do
1886	if (( memory == 0 ))
1887	then
1888	printf "\n +++ memory demand is undefined"
1889	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1890	printf "\n >>> "
1891	read memory 1>/dev/null 2>&1
1892	else
1893	done=true
1894	fi
1895	done
1896	fi
1897
1898
1899	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1900	if [[ $do_remote = true && -z $remote_username ]]
1901	then
1902	while [[ -z $remote_username ]]
1903	do
1904	printf "\n +++ username on remote host \"$host\" is undefined"
1905	printf "\n >>> Please type username:"
1906	printf "\n >>> "
1907	read remote_username
1908	done
1909	mc="$mc -u$remote_username"
1910	fi
1911
1912	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
1913	if [[ "$login_init_cmd" != "" ]]
1914	then
1915	export init_cmds="${login_init_cmd};"
1916	fi
1917
1918
1919	# set module load command and export for subjob
1920	if [[ "$modules" != "" ]]
1921	then
1922	if [[ $host = lctit ]]
1923	then
1924	export module_calls=". $modules"
1925	else
1926	export module_calls="module load ${modules};"
1927	fi
1928	fi
1929
1930	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
1931	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1932	then
1933	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
1934	then
1935	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
1936	fi
1937	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
1938	# then
1939	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
1940	# echo "*** module_calls = $module_calls"
1941	# fi
1942	fi
1943
1944
1945	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
1946	if [[ $host = lcsgib \|\| $host = lcsgih ]]
1947	then
1948	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
1949	then
1950	mpilib=mpt
1951	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
1952	then
1953	mpilib=mvapich
1954	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
1955	then
1956	mpilib=impi
1957	fi
1958	fi
1959
1960
1961
1962	###########################################################################
1963	# HEADER-AUSGABE
1964	###########################################################################
1965
1966
1967	calltime=$(date)
1968	printf "\n"
1969	# [[ $silent = false ]] && clear
1970	printf "#--------------------------------------------------------------# \n"
1971	printf "\| $version$calltime \| \n"
1972	printf "\| \| \n"
1973	spalte1="called on:"; spalte2=$localhost_realname
1974	printf "\| $spalte1$spalte2 \| \n"
1975	if [[ $local_compile = false ]]
1976	then
1977	if [[ $do_remote = true ]]
1978	then
1979	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
1980	else
1981	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
1982	fi
1983	else
1984	spalte1="compiling test only!"; spalte2=""
1985	fi
1986	printf "\| $spalte1$spalte2 \| \n"
1987	if [[ -n $numprocs ]]
1988	then
1989	spalte1="number of PEs:"; spalte2=$numprocs
1990	printf "\| $spalte1$spalte2 \| \n"
1991	fi
1992	if [[ -n $tasks_per_node ]]
1993	then
1994	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
1995	printf "\| $spalte1$spalte2 \| \n"
1996	fi
1997	if [[ $maximum_parallel_io_streams != $numprocs ]]
1998	then
1999	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2000	printf "\| $spalte1$spalte2 \| \n"
2001	fi
2002	if [[ $use_openmp = true ]]
2003	then
2004	spalte1="threads per task:"; spalte2="$threads_per_task"
2005	printf "\| $spalte1$spalte2 \| \n"
2006	fi
2007	printf "\| \| \n"
2008	if [[ $do_compile = true ]]
2009	then
2010	if [[ "$mopts" != "" ]]
2011	then
2012	spalte1="make options:"; spalte2=$mopts
2013	printf "\| $spalte1$spalte2 \| \n"
2014	zeile=$(echo "$mopts" \| cut -c41-)
2015	while [[ "$zeile" != "" ]]
2016	do
2017	spalte1=""
2018	spalte2=$zeile
2019	printf "\| $spalte1$spalte2 \| \n"
2020	zeile=$(echo "$zeile" \| cut -c41-)
2021	done
2022	fi
2023
2024	spalte1="cpp directives:"; spalte2=$cpp_options
2025	printf "\| $spalte1$spalte2 \| \n"
2026	zeile=$(echo "$cpp_options" \| cut -c41-)
2027	while [[ "$zeile" != "" ]]
2028	do
2029	spalte1=""
2030	spalte2=$zeile
2031	printf "\| $spalte1$spalte2 \| \n"
2032	zeile=$(echo "$zeile" \| cut -c41-)
2033	done
2034
2035	spalte1="compiler options:"; spalte2="$fopts"
2036	printf "\| $spalte1$spalte2 \| \n"
2037	zeile=$(echo "$fopts" \| cut -c41-)
2038	while [[ "$zeile" != "" ]]
2039	do
2040	spalte1=""
2041	spalte2=$zeile
2042	printf "\| $spalte1$spalte2 \| \n"
2043	zeile=$(echo "$zeile" \| cut -c41-)
2044	done
2045
2046	spalte1="linker options:"; spalte2=$lopts
2047	printf "\| $spalte1$spalte2 \| \n"
2048	zeile=$(echo "$lopts" \| cut -c41-)
2049	while [[ "$zeile" != "" ]]
2050	do
2051	spalte1=""
2052	spalte2=$zeile
2053	printf "\| $spalte1$spalte2 \| \n"
2054	zeile=$(echo "$zeile" \| cut -c41-)
2055	done
2056
2057	spalte1="modules to be load:"; spalte2=$modules
2058	printf "\| $spalte1$spalte2 \| \n"
2059	zeile=$(echo "$modules" \| cut -c41-)
2060	while [[ "$zeile" != "" ]]
2061	do
2062	spalte1=""
2063	spalte2=$zeile
2064	printf "\| $spalte1$spalte2 \| \n"
2065	zeile=$(echo "$zeile" \| cut -c41-)
2066	done
2067
2068	spalte1="main program":; spalte2=$mainprog
2069	printf "\| $spalte1$spalte2 \| \n"
2070	else
2071	spalte1=executable:; spalte2=$executable
2072	printf "\| $spalte1$spalte2 \| \n"
2073	fi
2074	printf "\| \| \n"
2075	spalte1="base name of files":; spalte2=$fname
2076	printf "\| $spalte1$spalte2 \| \n"
2077	if [[ $fname != $afname ]]
2078	then
2079	spalte1="base name of input files":; spalte2=$afname
2080	printf "\| $spalte1$spalte2 \| \n"
2081	fi
2082	spalte1="INPUT control list":; spalte2=$input_list
2083	printf "\| $spalte1$spalte2 \| \n"
2084	spalte1="OUTPUT control list":; spalte2=$output_list
2085	printf "\| $spalte1$spalte2 \| \n"
2086
2087	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2088	then
2089	spalte1="memory demand / PE":; spalte2="$memory MB"
2090	printf "\| $spalte1$spalte2 \| \n"
2091	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2092	printf "\| $spalte1$spalte2 \| \n"
2093	fi
2094
2095	if [[ $do_compile = true ]]
2096	then
2097	printf "\| \| \n"
2098	printf "\| Files to be compiled: \| \n"
2099	zeile=$source_list
2100	while [[ "$zeile" != "" ]]
2101	do
2102	spalte3=$zeile
2103	printf "\| $spalte3 \| \n"
2104	zeile=$(echo "$zeile" \| cut -c61-)
2105	done
2106	fi
2107	printf "#--------------------------------------------------------------#"
2108
2109
2110
2111	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2112	if [[ $do_trace = true ]]
2113	then
2114	(( i = 0 ))
2115	while (( i < iin ))
2116	do
2117	(( i = i + 1 ))
2118	if (( i == 1 ))
2119	then
2120	printf "\n\n >>> INPUT-file assignments:\n"
2121	fi
2122	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2123	done
2124	(( i = 0 ))
2125	while (( i < iout ))
2126	do
2127	(( i = i + 1 ))
2128	if (( i == 1 ))
2129	then
2130	printf "\n\n >>> OUTPUT-file assignments:\n"
2131	fi
2132	printf "\n ${localout[$i]} : ${pathout[$i]}"
2133	done
2134	(( i = 0 ))
2135	while (( i < iic ))
2136	do
2137	(( i = i + 1 ))
2138	if (( i == 1 ))
2139	then
2140	printf "\n\n >>> INPUT-commands:\n"
2141	fi
2142	printf "\n ${in_command[$i]}"
2143	done
2144	(( i = 0 ))
2145	while (( i < ioc ))
2146	do
2147	(( i = i + 1 ))
2148	if (( i == 1 ))
2149	then
2150	printf "\n\n >>> OUTPUT-commands:\n"
2151	fi
2152	printf "\n ${out_command[$i]}"
2153	done
2154	fi
2155
2156
2157	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2158	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2159	then
2160	antwort=dummy
2161	printf "\n\n"
2162	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2163	do
2164	printf " >>> everything o.k. (y/n) ? "
2165	read antwort
2166	done
2167	if [[ $antwort = n \|\| $antwort = N ]]
2168	then
2169	locat=user_abort; (( iec = 0 )); exit
2170	fi
2171	if [[ $do_batch = true ]]
2172	then
2173	printf " >>> batch-job will be created and submitted"
2174	else
2175	if [[ $local_compile = false ]]
2176	then
2177	printf " >>> MRUN will now continue to execute on this machine"
2178	else
2179	printf " >>> a test compilation will now be carried out on this machine"
2180	fi
2181	fi
2182	fi
2183
2184	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2185
2186	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2187	check_depository="${working_directory}/trunk/UTIL"
2188	check_sources="${working_directory}/tmp_check_namelist_files"
2189	skip_check=false
2190
2191	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2192	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2193	then
2194	skip_check=true
2195	reason="run on remote host or parameter file check has not been compiled."
2196	fi
2197	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2198	then
2199	skip_check=true
2200	reason="parameter file check has not been compiled."
2201	fi
2202
2203	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2204	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2205	then
2206	skip_check=true
2207	reason="serial run."
2208	fi
2209
2210	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2211	if [[ $check_namelist_files == false ]]
2212	then
2213	skip_check=true
2214	reason="-z option set."
2215	fi
2216
2217	if [[ $fromhost != $localhost ]]
2218	then
2219	skip_check=true
2220	reason="submitting host is local host."
2221	fi
2222
2223	if [[ $run_coupled_model == true ]]
2224	then
2225	skip_check=true
2226	reason="coupled run."
2227	fi
2228
2229	if [[ $restart_run == true ]]
2230	then
2231	skip_check=true
2232	reason="restart run."
2233
2234	fi
2235
2236	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2237	((last_char = `echo $filename_input \| wc -c` - 1))
2238	last_char=`echo $filename_input \|cut -c$last_char`
2239	if [[ "$last_char" == "f" ]]
2240	then
2241	skip_check=true
2242	reason="restart run.)"
2243	fi
2244
2245	if [[ $skip_check == false ]]
2246	then
2247
2248	tmp_check=${working_directory}/tmp_check
2249
2250	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2251	# NOT NECESSARILY REQUIRED
2252	line=""
2253	found=false
2254	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2255	while read line1
2256	do
2257	line="$line1"
2258	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2259	then
2260	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2261	found=true
2262	fi
2263	done < $tmp_check
2264
2265	if [[ $found = false ]]
2266	then
2267	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2268	fi
2269
2270	rm -rf ${working_directory}/tmp_check
2271
2272	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2273	for item in $input_list
2274	do
2275	if [[ "$item" == "restart" ]]
2276	then
2277	check_restart=1
2278	else
2279	check_restart=0
2280	fi
2281	done
2282
2283	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2284	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2285	then
2286	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2287	locat=check_namelist; exit
2288	fi
2289
2290	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2291	if [[ $check_restart == 1 ]]
2292	then
2293
2294
2295
2296	filenamef="${filename_input}f"
2297	if [[ ! -f $filenamef ]]
2298	then
2299	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2300	check_restart=0
2301	answer=dummy
2302	printf "\n\n"
2303
2304	if [[ $silent == false ]]
2305	then
2306	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2307	do
2308	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2309	read answer
2310	done
2311	if [[ $answer = a \|\| $answer = A ]]
2312	then
2313	printf "\n +++ Aborting...."
2314	locat=normal; exit
2315	fi
2316	fi
2317	else
2318	check_restart=1
2319	fi
2320	fi
2321
2322	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2323	mkdir $check_sources
2324	cd $check_sources
2325
2326
2327	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2328	if [[ -d $add_source_path ]]
2329	then
2330	printf "\n\n *** copying files from $check_depository"
2331	cp $check_depository/check_namelist_files.tar ./
2332
2333	printf "\n\n *** untar of makefile and source files in $check_sources"
2334	tar -xf check_namelist_files.tar > /dev/null 2>&1
2335
2336	printf "\n\n *** adding user code."
2337	cp $add_source_path/* ./
2338	touch check_namelist_files.f90
2339
2340	# GET COMPILER OPTIONS AND PERFORM MAKE
2341	printf "\n\n *** compiling code if necessary...\n"
2342
2343	# workaround for batch jobs on local machine (lcxe6)
2344	if [[ $do_batch == true && $do_remote == false ]]
2345	then
2346	eval $init_cmds
2347	fi
2348
2349	copts_check="-cpp -D__parallel -D__check"
2350	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2351
2352	# GET MAKE OUTPUT
2353	if [[ $? != 0 ]]
2354	then
2355	printf "\n +++ error during make."
2356	answer=dummy
2357	printf "\n\n"
2358	if [[ $silent == false ]]
2359	then
2360	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2361	do
2362	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2363	read answer
2364	done
2365	if [[ $answer = a \|\| $answer = A ]]
2366	then
2367	printf "\n +++ Aborting..."
2368	rm -rf $check_sources
2369	locat=normal; exit
2370	else
2371	skip_check=true
2372	fi
2373	else
2374	skip_check=true
2375	fi
2376	fi
2377	else
2378	cp $PALM_BIN/check_namelist_files.x ./
2379	fi
2380
2381	cp $filename_input ./PARIN
2382	if [[ $check_restart == 1 ]]
2383	then
2384	cp $filenamef ./PARINF
2385	fi
2386
2387	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2388	then
2389	printf "\n *** adding topography data"
2390	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2391
2392	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2393	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2394	# WHICH REQUIRE SUFFICIENT MEMORY
2395	ulimit -s unlimited
2396	fi
2397
2398	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2399	cat > ENVPAR << %%END%%
2400	&envpar run_identifier = '$fname', host = '$host',
2401	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2402	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2403	maximum_cpu_time_allowed = ${cpumax}.,
2404	revision = '$global_revision',
2405	local_dvrserver_running = $local_dvrserver_running /
2406
2407	%%END%%
2408
2409	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2410	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2411	printf "\n +++ WARNING: check_namelist_files.x not found."
2412	answer=dummy
2413	printf "\n\n"
2414
2415	if [[ $silent == false ]]
2416	then
2417	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2418	do
2419	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2420	read answer
2421	done
2422	if [[ $answer = a \|\| $answer = A ]]
2423	then
2424	printf "\n +++ Aborting..."
2425	rm -rf $check_sources
2426	locat=normal; exit
2427	else
2428	printf "\n *** Skipping parameter file check."
2429
2430	fi
2431	fi
2432
2433	elif [[ $skip_check == false ]]
2434	then
2435	# STARTING THE PARAMETER FILE CHECK
2436	printf "\n\n *** starting parameter file check..."
2437
2438	# CHECKING THE P3D FILE
2439	printf "\n\n (1) checking $filename_input"
2440	echo "$numprocs 0 0" > VARIN
2441	errors=`./check_namelist_files.x < VARIN 2>&1`
2442
2443	check_error=false
2444	if [[ "$errors" == "" ]]
2445	then
2446	printf " --> o.k."
2447	else
2448	printf " --> failed."
2449	check_error=true
2450	printf "\n\n $errors"
2451	fi
2452
2453	# CHECKING THE PD3F FILE IF NECESSARY
2454	if [[ $check_restart == 1 && $check_error == false ]]
2455	then
2456	printf "\n\n (2) checking $filenamef"
2457
2458	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2459	found=false
2460	cat PARINF\|while read line
2461	do
2462	line=$(echo $line\|sed 's/ //g')
2463	if [[ $line == "&inipar" ]]
2464	then
2465	start_search=true
2466	fi
2467
2468	if [[ $start_search == true ]]
2469	then
2470	if [[ $line == "initializing_actions='read_restart_data'" ]]
2471	then
2472	found=true
2473	break
2474	fi
2475	fi
2476
2477	if [[ $line == "/" ]]
2478	then
2479	start_search=false
2480	fi
2481
2482	done
2483
2484	if [[ $found = false ]]
2485	then
2486	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2487	printf "\n in &inipar list in $fname$p3df_suffix."
2488	rm -rf $check_sources
2489	locat=check_namelist; exit
2490	fi
2491
2492	# READ max_user_pr FROM FILES
2493	if [[ -f parin_for_check ]]
2494	then
2495	read max_pr_user < parin_for_check
2496	else
2497	max_user_pr=0
2498	fi
2499
2500	echo "$numprocs 1 $max_pr_user" > VARIN
2501	errors=`./check_namelist_files.x < VARIN 2>&1`
2502
2503	if [[ "$errors" == "" ]]
2504	then
2505	printf " --> o.k."
2506	else
2507	printf " --> failed."
2508	check_error=true
2509	printf "\n\n $errors"
2510	fi
2511	fi
2512
2513	# REPORT ERRORS AND CONTINUE/EXIT
2514	if [[ $check_error == true ]]
2515	then
2516	printf "\n +++ errors found in the parameter file!\n"
2517	answer=dummy
2518	printf "\n\n"
2519
2520	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2521	do
2522	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2523	read answer
2524	done
2525
2526	if [[ $answer = a \|\| $answer = A ]]
2527	then
2528	printf "\n +++ Aborting..."
2529	rm -rf $check_sources
2530	locat=normal; exit
2531	fi
2532	else
2533	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2534	fi
2535	rm -rf $check_sources
2536	fi
2537	else
2538	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2539	fi
2540
2541	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2542	rm -rf $check_sources
2543	cd $working_directory
2544
2545
2546	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2547	# CHENDE AKTIONEN DURCHGEFUEHRT
2548	if [[ $do_batch = false ]]
2549	then
2550
2551
2552	# TEMPORAEREN KATALOG ERZEUGEN
2553	mkdir -p $TEMPDIR
2554	chmod go+rx $TEMPDIR
2555	tmpcreate=true
2556
2557	# set striping on lustre file system
2558	# if [[ $localhost = lcsgih ]]
2559	# then
2560	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2561	# lfs getstripe $TEMPDIR
2562	# fi
2563
2564
2565	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2566	# TEMPORAERES VERZEICHNIS KOPIEREN
2567	if [[ $do_compile = true ]]
2568	then
2569
2570	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2571	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2572	if [[ $localhost = nech ]]
2573	then
2574	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2575	if mkdir -p $TEMPDIR_COMPILE
2576	then
2577	printf "\n *** \"$TEMPDIR_COMPILE\" "
2578	printf "\n is generated as temporary directory for cross compiling\n"
2579	else
2580	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2581	printf "\n needed for cross compilation failed"
2582	locat=compile
2583	exit
2584	fi
2585	else
2586	TEMPDIR_COMPILE=$TEMPDIR
2587	fi
2588
2589
2590	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2591	line=""
2592	grep "%depository_path" $config_file > tmp_mrun
2593	while read line
2594	do
2595	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2596	then
2597	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2598	then
2599	global_depository_path=`echo $line \| cut -d" " -s -f2`
2600	fi
2601	fi
2602	done < tmp_mrun
2603
2604	line=""
2605	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2606	while read line
2607	do
2608	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2609	then
2610	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2611	then
2612	local_depository_path=`echo $line \| cut -d" " -s -f2`
2613	fi
2614	fi
2615	done < tmp_mrun
2616
2617	if [[ "$local_depository_path" = "" ]]
2618	then
2619	if [[ "$global_depository_path" != "" ]]
2620	then
2621	local_depository_path=$global_depository_path
2622	else
2623	printf "\n\n +++ no depository path found in configuration file"
2624	printf "\n for local host \"$localhost\" "
2625	printf "\n please set \"\%depository_path\" in configuration file\n"
2626	locat=config_file; exit
2627	fi
2628	fi
2629	eval local_depository_path=$local_depository_path
2630	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2631	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2632
2633
2634	basename=`print $mainprog \| cut -f1 -d"."`
2635	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2636	if [[ ! -f $make_depository ]]
2637	then
2638	printf "\n"
2639	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2640	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2641	else
2642	cp $make_depository $TEMPDIR_COMPILE
2643	cd $TEMPDIR_COMPILE
2644	tar -xf $make_depository > /dev/null 2>&1
2645	cd - > /dev/null
2646	fi
2647
2648	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2649
2650	else
2651
2652	cp $executable ${TEMPDIR}/a.out
2653
2654	fi
2655
2656
2657	# WECHSEL IN TEMPORAEREN KATALOG
2658	cd $TEMPDIR
2659	printf "\n *** changed to temporary directory: $TEMPDIR"
2660
2661
2662	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2663	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2664	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2665	# ERMITTELN
2666	(( i = 0 ))
2667	while (( i < iout ))
2668	do
2669	(( i = i + 1 ))
2670	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2671	then
2672	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2673	else
2674	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2675	fi
2676	done
2677
2678
2679	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2680	if [[ $do_compile = true ]]
2681	then
2682
2683
2684	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2685	printf "\n\n\n *** compilation starts \n$striche\n"
2686	printf " *** compilation with make using following options:\n"
2687	printf " make depository: $make_depository"
2688	if [[ "$mopts" != "" ]]
2689	then
2690	printf " make options: $mopts\n"
2691	fi
2692	printf " compilername: $compiler_name\n"
2693	printf " compiler options: $fopts\n"
2694	printf " preprocessor directives: $cpp_options \n"
2695	printf " linker options: $lopts \n"
2696	if [[ "$modules" != "" ]]
2697	then
2698	printf " modules to be load: $modules \n"
2699	fi
2700	printf " source code files: $source_list \n"
2701
2702	if [[ $localhost = nech ]]
2703	then
2704	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2705	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2706	cp $TEMPDIR_COMPILE/a.out .
2707	[[ $? != 0 ]] && compile_error=true
2708	rm -rf $TEMPDIR_COMPILE
2709	elif [[ $localhost = ibmh ]]
2710	then
2711	printf " compiler is called via ssh on \"plogin1\" \n"
2712	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2713	[[ ! -f a.out ]] && compile_error=true
2714	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2715	elif [[ $localhost = lcsgib ]]
2716	then
2717	printf " compiler is called via ssh on \"bicegate0\" \n"
2718	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2719	[[ ! -f a.out ]] && compile_error=true
2720	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2721	elif [[ $localhost = lcsgih ]]
2722	then
2723	printf " compiler is called via ssh on \"hicegate0\" \n"
2724	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2725	[[ ! -f a.out ]] && compile_error=true
2726	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2727	elif [[ $localhost = lcflow ]]
2728	then
2729	printf " compiler is called via ssh on \"flow\" \n"
2730	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2731	[[ ! -f a.out ]] && compile_error=true
2732	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2733	else
2734	[[ "$init_cmds" != "" ]] && eval $init_cmds
2735	[[ "$module_calls" != "" ]] && eval $module_calls
2736	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2737
2738	fi
2739
2740	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2741	then
2742	printf "\n +++ error occured while compiling or linking"
2743	locat=compile
2744
2745	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
2746	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
2747	# then
2748	exit
2749	# else
2750	# locat=normal
2751	# fi
2752	else
2753	printf "$striche\n *** compilation finished \n"
2754	fi
2755	fi
2756
2757
2758	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2759	if [[ $local_compile = true ]]
2760	then
2761	cd $HOME
2762	rm -rf $TEMPDIR
2763	locat=local_compile; exit
2764	fi
2765
2766
2767	# BEREITSTELLEN DER INPUT-DATEIEN
2768	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2769	(( i = 0 ))
2770	while (( i < iin ))
2771	do
2772	(( i = i + 1 ))
2773	if (( i == 1 ))
2774	then
2775	printf "\n\n *** providing INPUT-files:\n$striche"
2776	fi
2777
2778
2779	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2780	if [[ "${transin[$i]}" = unavailable ]]
2781	then
2782	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2783	then
2784	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2785	printf "\n is not available!"
2786	else
2787	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2788	printf "\n is not available!"
2789	fi
2790	continue
2791	fi
2792
2793	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2794	files_for_pes=false; datentyp=file
2795	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2796	then
2797	files_for_pes=true; datentyp=directory
2798	actionin[$i]=""
2799	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2800	then
2801	actionin[$i]=""
2802	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2803	then
2804	files_for_pes=true; datentyp=directory
2805	actionin[$i]="ar"
2806	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2807	then
2808	actionin[$i]="ar"
2809	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2810	then
2811	files_for_pes=true; datentyp=directory
2812	actionin[$i]="fl"
2813	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
2814	then
2815	actionin[$i]="fl"
2816	fi
2817
2818	if [[ $files_for_pes = true ]]
2819	then
2820	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
2821	else
2822	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
2823	fi
2824
2825	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
2826	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
2827	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
2828	# SERVER ZU HOLEN
2829	if [[ "${actionin[$i]}" = fl ]]
2830	then
2831	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
2832	if [[ $files_for_pes = false ]]
2833	then
2834	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
2835	then
2836	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
2837	got_tmp[$i]=true
2838	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2839	then
2840	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2841	printf "\n *** trying to use backup copy in \"$WORK\" "
2842	cp $WORK/${frelin[$i]} ${localin[$i]}
2843	else
2844	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2845	printf "\n or \"$tmp_data_catalog\" does not exist!"
2846	printf "\n *** trying to get copy from archive"
2847	actionin[$i]=ar
2848	fi
2849	else
2850	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
2851	then
2852	mkdir ${localin[$i]}
2853	cd $tmp_data_catalog/${frelin[$i]}
2854	for file in $(ls *)
2855	do
2856	ln $file $TEMPDIR/${localin[$i]}
2857	done
2858	cd $TEMPDIR
2859	got_tmp[$i]=true
2860	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
2861	then
2862	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
2863	printf "\n *** trying to use backup copy in \"$WORK\" "
2864	cp -r $WORK/${frelin[$i]} ${localin[$i]}
2865	else
2866	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
2867	printf "\n or \"$tmp_data_catalog\" does not exist!"
2868	printf "\n *** trying to get copy from archive"
2869	actionin[$i]=ar
2870	fi
2871	fi
2872	fi
2873
2874
2875	# DATEI LIEGT AUF ARCHIV-SERVER
2876	if [[ "${actionin[$i]}" = ar ]]
2877	then
2878
2879	if [[ $files_for_pes = false ]]
2880	then
2881	printf "\n file will be restored from archive-system ($archive_system)!"
2882	else
2883	printf "\n directory will be restored from archive-system ($archive_system)!"
2884	fi
2885
2886	file_restored=false
2887
2888	if [[ $archive_system = asterix ]]
2889	then
2890	do_stagein=true
2891	(( stagein_anz = 0 ))
2892	while [[ $do_stagein = true ]]
2893	do
2894	if [[ $files_for_pes = false ]]
2895	then
2896	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
2897	else
2898	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
2899	fi
2900	cat STAGEIN_OUTPUT
2901	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
2902	then
2903	file_restored=true
2904	do_stagein=false
2905	else
2906	(( stagein_anz = stagein_anz + 1 ))
2907	if (( stagein_anz == 10 ))
2908	then
2909	printf "\n +++ stagein stoped after 10 tries"
2910	locat=stage
2911	exit
2912	fi
2913	printf "\n +++ restoring from archive failed, trying again:"
2914	sleep 900
2915	fi
2916	done
2917	elif [[ $archive_system = DMF ]]
2918	then
2919	if [[ $files_for_pes = false ]]
2920	then
2921	printf "\n +++ restoring of single files impossible with $archive_system !\n"
2922	locat=DMF
2923	exit
2924	else
2925	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
2926	cp -r $ARCHIVE/${frelin[$i]} $PWD
2927	file_restored=true
2928	fi
2929	elif [[ $archive_system = tivoli ]]
2930	then
2931	if [[ $files_for_pes = false ]]
2932	then
2933	if [[ $localhost = lcsgih ]]
2934	then
2935	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2936	else
2937	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
2938	fi
2939	else
2940	(( inode = 0 ))
2941	while (( inode < nodes ))
2942	do
2943	if [[ $localhost = lcsgih ]]
2944	then
2945	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2946	else
2947	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
2948	fi
2949	(( inode = inode + 1 ))
2950	done
2951	fi
2952	file_restored=true
2953	elif [[ $archive_system = ut ]]
2954	then
2955	if [[ $files_for_pes = false ]]
2956	then
2957	cp $UT/${frelin[$i]} .
2958	else
2959	(( inode = 0 ))
2960	while (( inode < nodes ))
2961	do
2962	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
2963	(( inode = inode + 1 ))
2964	done
2965	fi
2966	file_restored=true
2967	else
2968	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
2969	locat=rearchive
2970	exit
2971	fi
2972
2973	if [[ $file_restored = true ]]
2974	then
2975
2976	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
2977	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
2978	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
2979	if [[ $files_for_pes = false ]]
2980	then
2981	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
2982	else
2983	mkdir $tmp_data_catalog/${frelin[$i]}
2984	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
2985	fi
2986	got_tmp[$i]=true
2987
2988	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
2989	mv ${frelin[$i]} ${localin[$i]}
2990
2991	fi
2992	fi
2993
2994
2995	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
2996	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
2997	then
2998
2999	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3000	then
3001
3002	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3003	printf "\n file will be provided for $numprocs processors"
3004	mkdir ${localin[$i]}
3005	ival=$numprocs
3006	(( ii = 0 ))
3007	while (( ii <= ival-1 ))
3008	do
3009	if (( ii < 10 ))
3010	then
3011	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3012	elif (( ii < 100 ))
3013	then
3014	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3015	elif (( ii < 1000 ))
3016	then
3017	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3018	else
3019	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3020	fi
3021	(( ii = ii + 1 ))
3022	done
3023
3024	else
3025
3026	if [[ $files_for_pes = true ]]
3027	then
3028
3029	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3030	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3031	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3032	# PER MOVE UMBENANNT WERDEN
3033	printf "\n providing $numprocs files for the respective processors"
3034	mkdir ${localin[$i]}
3035	if [[ $link_local_input = true ]]
3036	then
3037	printf " using ln -f\n"
3038	cd ${absnamein[$i]}
3039	for file in $(ls *)
3040	do
3041	ln -f $file ${localin[$i]}
3042	done
3043	cd $TEMPDIR
3044	fi
3045	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3046	if [[ ! -f "${localin[$i]}/_0000" ]]
3047	then
3048	if [[ $link_local_input = true ]]
3049	then
3050	printf " ln failed for .../_0000, using cp...\n"
3051	fi
3052	cp -r ${absnamein[$i]}/* ${localin[$i]}
3053	fi
3054
3055	else
3056	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3057	if [[ $link_local_input = true ]]
3058	then
3059	printf " using ln -f\n"
3060	ln -f ${absnamein[$i]} ${localin[$i]}
3061	fi
3062	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3063	if [[ ! -f "${localin[$i]}" ]]
3064	then
3065	if [[ $link_local_input = true ]]
3066	then
3067	printf " ln failed, using cp...\n"
3068	fi
3069	cp ${absnamein[$i]} ${localin[$i]}
3070	fi
3071	fi
3072	fi
3073	fi
3074
3075	done
3076	if (( i != 0 ))
3077	then
3078	printf "\n$striche\n *** all INPUT-files provided \n"
3079	fi
3080
3081
3082	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3083	(( i = 0 ))
3084	while (( i < iic ))
3085	do
3086	(( i = i + 1 ))
3087	if (( i == 1 ))
3088	then
3089	printf "\n\n *** execution of INPUT-commands:\n$striche"
3090	fi
3091	printf "\n >>> ${in_command[$i]}"
3092	eval ${in_command[$i]}
3093	if (( i == iic ))
3094	then
3095	printf "\n$striche\n"
3096	fi
3097	done
3098
3099
3100	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3101	cpurest=${cpumax}.
3102
3103
3104	# START DVR STREAMING SERVER
3105	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3106	then
3107	if [[ "$dvr_server" != "" ]]
3108	then
3109
3110	printf "\n\n *** preparing the dvr streaming server configuration file"
3111
3112	# Check, if a dvr server is already running
3113	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3114	if [[ "$running_dvrserver_id" != "" ]]
3115	then
3116
3117	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3118	printf "\n This server is used instead starting a new one!"
3119	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3120
3121	else
3122
3123	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3124	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3125	then
3126	cp ${PALM_BIN}/.dvrserver.config .
3127
3128	# Entering the BASEDIR, UID and GID into this file
3129	user_id=`id -u`
3130	group_id=`id -g`
3131	# & is needed as seperator, because TEMPDIR contains /
3132	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3133	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3134	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3135	mv .dvrserver.3 .dvrserver.config
3136	rm .dvrserver.1 .dvrserver.2
3137
3138	# Start dvr server in background, get his id and print on terminal
3139	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3140	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3141	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3142	local_dvrserver_running=.TRUE.
3143	else
3144	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3145	printf "\n \"$PALM_BIN\" "
3146	locat=dvr
3147	exit
3148	fi
3149
3150	fi
3151
3152	else
3153	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3154	fi
3155	fi
3156
3157
3158	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3159	# LESEN VON PALM)
3160	cat > ENVPAR << %%END%%
3161	&envpar run_identifier = '$fname', host = '$localhost',
3162	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3163	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3164	maximum_cpu_time_allowed = ${cpumax}.,
3165	revision = '$global_revision',
3166	local_dvrserver_running = $local_dvrserver_running /
3167
3168	%%END%%
3169
3170
3171	# PROGRAMMSTART
3172	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3173	PATH=$PATH:$TEMPDIR
3174
3175	# MPI debug option (argument checking, slows down execution due to increased latency)
3176	if [[ "$mpi_debug" = true ]]
3177	then
3178	export MPI_CHECK_ARGS=1
3179	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3180	fi
3181
3182	if [[ "$totalview" = true ]]
3183	then
3184	printf "\n *** totalview debugger will be used"
3185	tv_opt="-tv"
3186	else
3187	tv_opt=""
3188	fi
3189
3190	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3191	then
3192	if [[ "$ENVIRONMENT" = BATCH ]]
3193	then
3194	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3195	then
3196	printf "\n +++ debug is allowed in interactive mode only"
3197	locat=debug
3198	exit
3199	fi
3200	fi
3201	if [[ $localhost = decalpha ]]
3202	then
3203	dxladebug a.out
3204	elif [[ $localhost = ibmh ]]
3205	then
3206
3207	# SETUP THE IBM MPI ENVIRONMENT
3208	export MP_SHARED_MEMORY=yes
3209	export AIXTHREADS_SCOPE=S
3210	export OMP_NUM_THREADS=$threads_per_task
3211	export AUTHSTATE=files
3212	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3213
3214	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3215	export MP_ADAPTER_USE=shared
3216	export MP_CPU_USE=multiple
3217	export MP_TIMEOUT=1200
3218
3219	unset MP_TASK_AFFINITY
3220
3221	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3222	#(( ii = 1 ))
3223	#while (( ii <= $numprocs ))
3224	#do
3225	# echo $localhost_realname >> hostfile
3226	# (( ii = ii + 1 ))
3227	#done
3228	#export MP_HOSTFILE=hostfile
3229
3230	if [[ "$LOADLBATCH" = yes ]]
3231	then
3232	totalview poe a.out $ROPTS
3233	else
3234	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3235	export TVDSVRLAUNCHCMD=ssh
3236	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3237	fi
3238	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3239	then
3240	# CURRENTLY NO DEBUGGER ON LCSGI
3241	if [[ $run_coupled_model = true ]]
3242	then
3243	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3244	locat=debug
3245	exit
3246	else
3247	echo "no_coupling" > runfile_atmos
3248	fi
3249	(( ii = $numprocs / $threads_per_task ))
3250	export OMP_NUM_THREADS=$threads_per_task
3251	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3252	if [[ $threads_per_task != 1 ]]
3253	then
3254	printf "\n threads per task: $threads_per_task"
3255	fi
3256	printf "\n\n"
3257	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3258	then
3259	# export MPI_LAUNCH_TIMEOUT=360
3260	if [[ "$totalview" = true ]]
3261	then
3262	printf "\n running totalview debugger"
3263	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3264	else
3265	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3266	fi
3267	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3268	then
3269	# ulimit -s 300000 # A too large stack size causes problems
3270	# export MV2_NUM_PORTS=2
3271	# export MV2_CPU_MAPPING=0:1:2:3
3272	if [[ "$totalview" = true ]]
3273	then
3274	printf "\n running totalview debugger"
3275	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3276	else
3277	mpiexec ./a.out $ROPTS < runfile_atmos
3278	fi
3279	fi
3280	else
3281	printf "\n +++ no debug available on \"$localhost\" "
3282	printf "\n or not implemented in mrun so far"
3283	locat=debug
3284	exit
3285	fi
3286
3287	# end debug mode
3288	else
3289
3290	# normal execution
3291	if [[ -n $numprocs ]]
3292	then
3293	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3294	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3295	then
3296	# SETUP THE IBM MPI ENVIRONMENT
3297	if [[ $host != ibmh && $host != ibmkisti ]]
3298	then
3299	export MP_SHARED_MEMORY=yes
3300	export AIXTHREAD_SCOPE=S
3301	export OMP_NUM_THREADS=$threads_per_task
3302	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3303	export AUTHSTATE=files
3304	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3305	# export MP_PRINTENV=yes
3306
3307	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3308	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3309	export MP_WAIT_MODE=poll
3310	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3311	fi
3312
3313	if [[ $host = ibmkisti ]]
3314	then
3315	export LANG=en_US
3316	export MP_SHARED_MEMORY=yes
3317	if [[ $threads_per_task = 1 ]]
3318	then
3319	export MP_SINGLE_THREAD=yes
3320	export MEMORY_AFFINITY=MCM
3321	else
3322	export OMP_NUM_THREADS=$threads_per_task
3323	fi
3324	fi
3325
3326	if [[ "$LOADLBATCH" = yes ]]
3327	then
3328	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3329	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3330	then
3331	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3332	else
3333	if [[ $run_coupled_model = false ]]
3334	then
3335	if [[ "$ocean_file_appendix" = true ]]
3336	then
3337	echo "precursor_ocean" > runfile_atmos
3338	else
3339	echo "precursor_atmos" > runfile_atmos
3340	fi
3341	else
3342	(( iia = $numprocs_atmos / $threads_per_task ))
3343	(( iio = $numprocs_ocean / $threads_per_task ))
3344	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3345	printf "\n using $coupled_mode coupling"
3346	printf "\n\n"
3347	echo "coupled_run $iia $iio" > runfile_atmos
3348	fi
3349	poe ./a.out $ROPTS < runfile_atmos
3350	fi
3351	else
3352	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3353	then
3354	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3355	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3356	then
3357	if [[ -f $hostfile ]]
3358	then
3359	cp $hostfile hostfile
3360	else
3361	(( ii = 1 ))
3362	while (( ii <= $numprocs ))
3363	do
3364	echo $localhost_realname >> hostfile
3365	(( ii = ii + 1 ))
3366	done
3367	fi
3368	export MP_HOSTFILE=hostfile
3369	if [[ $run_coupled_model = false ]]
3370	then
3371	if [[ "$ocean_file_appendix" = true ]]
3372	then
3373	echo "precursor_ocean" > runfile_atmos
3374	else
3375	echo "precursor_atmos" > runfile_atmos
3376	fi
3377	else
3378	(( iia = $numprocs_atmos / $threads_per_task ))
3379	(( iio = $numprocs_ocean / $threads_per_task ))
3380	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3381	printf "\n using $coupled_mode coupling"
3382	printf "\n\n"
3383	echo "coupled_run $iia $iio" > runfile_atmos
3384	fi
3385	if [[ $localhost = ibmy ]]
3386	then
3387	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3388	else
3389	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3390	fi
3391
3392	else
3393	if [[ "$host_file" = "" ]]
3394	then
3395	printf "\n +++ no hostfile given in configuration file"
3396	locat=config_file
3397	exit
3398	else
3399	eval host_file=$host_file
3400	fi
3401	export MP_HOSTFILE=$host_file
3402	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3403	fi
3404	fi
3405	elif [[ $host = nech \|\| $host = necriam ]]
3406	then
3407	(( ii = nodes ))
3408	if [[ $ii = 1 ]]
3409	then
3410	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3411	export MPIPROGINF=YES
3412	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3413	echo "*** execution on single node with mpirun"
3414	mpirun -np $numprocs ./a.out $ROPTS
3415	else
3416	(( i = 0 ))
3417	while (( i < ii ))
3418	do
3419	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3420	(( i = i + 1 ))
3421	done
3422
3423	echo "#!/bin/sh" > mpi_exec_shell
3424	echo " " >> mpi_exec_shell
3425	echo "set -u" >> mpi_exec_shell
3426	echo "F_ERRCNT=0" >> mpi_exec_shell
3427	echo "MPIPROGINV=YES" >> mpi_exec_shell
3428	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3429	echo "cpurest=$cpurest" >> mpi_exec_shell
3430	echo "fname=$fname" >> mpi_exec_shell
3431	echo "localhost=$localhost" >> mpi_exec_shell
3432	echo "return_addres=$return_addres" >> mpi_exec_shell
3433	echo "return_username=$return_username" >> mpi_exec_shell
3434	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3435	echo "write_binary=$write_binary" >> mpi_exec_shell
3436	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3437	echo " " >> mpi_exec_shell
3438	echo "export F_ERRCNT" >> mpi_exec_shell
3439	echo "export MPIPROGINV" >> mpi_exec_shell
3440	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3441	echo "export cpurest" >> mpi_exec_shell
3442	echo "export fname" >> mpi_exec_shell
3443	echo "export localhost" >> mpi_exec_shell
3444	echo "export return_addres" >> mpi_exec_shell
3445	echo "export return_username" >> mpi_exec_shell
3446	echo "export tasks_per_node" >> mpi_exec_shell
3447	echo "export write_binary" >> mpi_exec_shell
3448	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3449	echo " " >> mpi_exec_shell
3450	echo "exec ./a.out" >> mpi_exec_shell
3451
3452	chmod u+x mpi_exec_shell
3453	export MPIPROGINF=YES
3454	mpirun -f multinode_config &
3455	wait
3456
3457	fi
3458	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3459	then
3460
3461	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3462	# DOES NOT EXIST
3463	if [[ $host != lcsgih && $host != lcsgib ]]
3464	then
3465	if [[ -f $hostfile ]]
3466	then
3467	cp $hostfile hostfile
3468	(( ii = $numprocs / $threads_per_task ))
3469	else
3470	(( ii = 1 ))
3471	while (( ii <= $numprocs / $threads_per_task ))
3472	do
3473	echo $localhost_realname >> hostfile
3474	(( ii = ii + 1 ))
3475	done
3476	fi
3477	eval zeile=\"`head -n $ii hostfile`\"
3478	printf "\n *** running on: $zeile"
3479	fi
3480
3481	(( ii = $numprocs / $threads_per_task ))
3482	export OMP_NUM_THREADS=$threads_per_task
3483	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3484	if [[ $threads_per_task != 1 ]]
3485	then
3486	# increase stack size to unlimited, because large runs
3487	# may abort otherwise
3488	ulimit -Ss unlimited
3489	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3490	fi
3491	if [[ $run_coupled_model = false ]]
3492	then
3493	if [[ "$ocean_file_appendix" = true ]]
3494	then
3495	echo "precursor_ocean" > runfile_atmos
3496	else
3497	echo "precursor_atmos" > runfile_atmos
3498	fi
3499	printf "\n\n"
3500	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3501	then
3502	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3503	then
3504	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3505	# export MPI_DSM_DISTRIBUTE=1
3506	# MPI_DSM_CPULIST: pin MPI processes to cores
3507	if [[ $use_openmp = false ]]
3508	then
3509	if [[ "$sgi_feature" = ice2 ]]
3510	then
3511	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3512	else
3513	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3514	fi
3515	else
3516	unset MPI_DSM_CPULIST
3517	fi
3518	# MPI_IB_RAILS: use both IB rails on ICE2
3519	export MPI_BUFS_PER_HOST=512
3520	export MPI_IB_RAILS=2
3521	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3522	export MPI_CONNECTIONS_THRESHOLD=8192
3523	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3524	export MPI_TYPE_DEPTH=20
3525	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3526	export MPI_GROUP_MAX=64
3527	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3528	if [[ $use_openmp = true ]]
3529	then
3530	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3531	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3532	else
3533	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3534	fi
3535
3536	# next is test for openmp usage
3537	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3538	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3539	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3540	then
3541	export MV2_NUM_PORTS=2
3542	# The default setting of MV2_CPU_MAPPING gives best results
3543	# export MV2_ENABLE_AFFINITY=1
3544	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3545	# if [[ "$sgi_feature" = ice2 ]]
3546	# then
3547	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3548	# else
3549	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3550	# fi
3551	if [[ $use_openmp = true ]]
3552	then
3553	unset MV2_CPU_MAPPING
3554	export MV2_ENABLE_AFFINITY=0
3555	fi
3556	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3557	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3558	if [[ $use_openmp = true ]]
3559	then
3560	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3561	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3562	else
3563	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3564	fi
3565	elif [[ "$mpilib" = impi ]]
3566	then
3567	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3568	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3569	fi
3570	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3571	then
3572	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3573	elif [[ $host = lcflow ]]
3574	then
3575	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3576	elif [[ $host = lcsb ]]
3577	then
3578	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3579	elif [[ $host = lckiaps ]]
3580	then
3581	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3582	else
3583	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3584	fi
3585	else
3586
3587	# currently there is no full MPI-2 support on ICE and XT4
3588	(( iia = $numprocs_atmos / $threads_per_task ))
3589	(( iio = $numprocs_ocean / $threads_per_task ))
3590	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3591	printf "\n using $coupled_mode coupling"
3592	printf "\n\n"
3593
3594	if [[ $coupled_mode = "mpi2" ]]
3595	then
3596	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3597	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3598	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3599	then
3600
3601	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3602	then
3603	# export MPI_LAUNCH_TIMEOUT=360
3604	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3605	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3606	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3607	then
3608	# ulimit -s 300000 # A too large stack size causes problems
3609	# export MV2_NUM_PORTS=2
3610	# export MV2_CPU_MAPPING=0:1:2:3
3611	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3612	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3613	fi
3614
3615	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3616	then
3617
3618	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3619	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3620
3621	else
3622	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3623	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3624	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3625	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3626	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3627	fi
3628	wait
3629
3630	else
3631
3632	echo "coupled_run $iia $iio" > runfile_atmos
3633	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3634	then
3635
3636	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3637	then
3638	# export MPI_LAUNCH_TIMEOUT=360
3639	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3640	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3641	then
3642	# ulimit -s 300000 # A too large stack size causes problems
3643	# export MV2_NUM_PORTS=2
3644	# export MV2_CPU_MAPPING=0:1:2:3
3645	mpiexec ./a.out $ROPTS < runfile_atmos
3646	fi
3647
3648	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3649	then
3650
3651	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3652
3653	elif [[ $host = lck \|\| $host = lckordi ]]
3654	then
3655	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3656	fi
3657	wait
3658	fi
3659
3660	fi
3661	elif [[ $host = decalpha ]]
3662	then
3663	dmpirun -np $numprocs a.out $ROPTS
3664	elif [[ $host = lckyoto ]]
3665	then
3666	set -xv
3667	export P4_RSHCOMMAND=plesh
3668	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3669	if [[ "$ENVIRONMENT" = BATCH ]]
3670	then
3671	if [[ "$cond2" = fujitsu ]]
3672	then
3673	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3674	elif [[ "cond2" = pgi ]]
3675	then
3676	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3677	else
3678	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3679	fi
3680	else
3681	if [[ "$cond2" = "" ]]
3682	then
3683	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3684	else
3685	mpirun -np $numprocs ./a.out $ROPTS
3686	fi
3687	fi
3688	set +xv
3689	elif [[ $host = lctit ]]
3690	then
3691	export OMP_NUM_THREADS=$threads_per_task
3692	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3693	if [[ "$threads_per_task" != 1 ]]
3694	then
3695	export MV2_ENABLE_AFFINITY=0
3696	fi
3697	echo "----- PBS_NODEFILE content:"
3698	cat $PBS_NODEFILE
3699	echo "-----"
3700	(( ii = $numprocs / $threads_per_task ))
3701	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3702	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3703	else
3704	mpprun -n $numprocs a.out $ROPTS
3705	fi
3706	[[ $? != 0 ]] && execution_error=true
3707
3708
3709	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3710	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3711	then
3712	apprentice
3713	fi
3714	else
3715	a.out $ROPTS
3716	fi
3717	fi
3718	if [[ $? != 0 \|\| $execution_error = true ]]
3719	then
3720
3721	# ABBRUCH BEI LAUFZEITFEHLER
3722	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3723	printf "\n +++ runtime error occured"
3724	locat=execution
3725	exit
3726	else
3727	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3728	printf "\n$striche\n *** execution finished \n"
3729
3730	# Stop the dvr streaming server and process the dvr output in order
3731	# to create dvrs- and html-files containing all streams
3732	if [[ "$dvrserver_id" != "" ]]
3733	then
3734	kill $dvrserver_id
3735	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3736
3737	# If there is a directory, data have been output by the
3738	# streaming server. Otherwise, user has chosen dvrp_output=local
3739	if [[ -d DATA_DVR ]]
3740	then
3741
3742	# Add the current dvr configuration file to the dvr output
3743	# directory
3744	cp .dvrserver.config DATA_DVR
3745
3746	# Process the dvr output (option -s for also generating
3747	# sequence mode data)
3748	process_dvr_output -d DATA_DVR -f $fname -s
3749
3750	else
3751
3752	# Process the local output
3753	process_dvr_output -l -d DATA_DVR -f $fname
3754
3755	fi
3756
3757	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3758	then
3759
3760	# Process dvr output generated in local mode (dvrp_output=local)
3761	process_dvr_output -l -d DATA_DVR -f $fname
3762
3763	fi
3764	fi
3765
3766
3767
3768	# Call of combine_plot_fields in order to merge single files written
3769	# by each PE into one file.
3770	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3771	then
3772	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3773	printf "\n 2d- and/or 3d-data may be incomplete!"
3774	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3775	elif [[ "$combine_plot_fields" == true ]]
3776	then
3777	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3778	combine_plot_fields${block}.x
3779	else
3780	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3781	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3782	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3783	fi
3784
3785
3786
3787	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3788	(( i = 0 ))
3789	while (( i < ioc ))
3790	do
3791	(( i = i + 1 ))
3792	if (( i == 1 ))
3793	then
3794	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3795	fi
3796	printf "\n >>> ${out_command[$i]}"
3797	eval ${out_command[$i]}
3798	if (( i == ioc ))
3799	then
3800	printf "\n$striche\n"
3801	fi
3802	done
3803
3804
3805	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
3806	if [[ $do_trace = true ]]
3807	then
3808	printf "\n\n"
3809	ls -al
3810	fi
3811
3812
3813
3814	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
3815	(( i = 0 ))
3816	while (( i < iout ))
3817	do
3818	(( i = i + 1 ))
3819	if (( i == 1 ))
3820	then
3821	printf "\n\n *** saving OUTPUT-files:\n$striche"
3822	fi
3823
3824	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3825	files_for_pes=false; filetyp=file
3826	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
3827	then
3828	files_for_pes=true; filetyp=directory
3829	actionout[$i]=""
3830	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
3831	then
3832	actionout[$i]=""
3833	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
3834	then
3835	files_for_pes=true; filetyp=directory
3836	actionout[$i]="ar"
3837	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
3838	then
3839	actionout[$i]="ar"
3840	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
3841	then
3842	files_for_pes=true; filetyp=directory
3843	actionout[$i]="fl"
3844	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
3845	then
3846	actionout[$i]="fl"
3847	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
3848	then
3849	files_for_pes=true; filetyp=directory
3850	actionout[$i]="tr"
3851	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
3852	then
3853	actionout[$i]="tr"
3854	fi
3855
3856	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
3857	then
3858	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
3859	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
3860	then
3861	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
3862	else
3863
3864
3865	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3866	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3867	# REMOTE-RECHNUNGEN
3868	if [[ "${actionout[$i]}" = tr ]]
3869	then
3870	if [[ $localhost != $fromhost ]]
3871	then
3872	if [[ $files_for_pes = false ]]
3873	then
3874	cps=""
3875	cst=""
3876	else
3877	cps=-c
3878	cst="/"
3879	fi
3880	if [[ $localhost = nech ]]
3881	then
3882
3883	# TRANSFER IN EIGENSTAENDIGEM JOB
3884	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3885	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3886	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3887	if [[ $files_for_pes = false ]]
3888	then
3889	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3890	else
3891	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
3892	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
3893	fi
3894
3895	echo "set -x" > transfer_${localout[$i]}
3896	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3897
3898	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
3899	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
3900	printf "\n or higher cycle\n"
3901	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3902
3903	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3904
3905	if [[ $localhost = nech ]]
3906	then
3907	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3908	else
3909	if [[ "$LOGNAME" = b323013 ]]
3910	then
3911	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3912	else
3913	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3914	fi
3915	fi
3916
3917	else
3918
3919	# TRANSFER INNERHALB DIESES JOBS
3920	transfer_failed=false
3921	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
3922	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
3923	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3924	[[ $? != 0 ]] && transfer_failed=true
3925
3926	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
3927	# LOKALER MASCHINE ANLEGEN
3928	if [[ $transfer_failed = true ]]
3929	then
3930	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
3931	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
3932
3933	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
3934	# ANLEGEN.
3935	eval local_catalog=${pathout[$i]}
3936	if [[ ! -d $local_catalog ]]
3937	then
3938	printf " *** local directory does not exist. Trying to create:\n"
3939	printf " $local_catalog \n"
3940	mkdir -p $local_catalog
3941	fi
3942	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
3943	transfer_problems=true
3944	fi
3945	fi
3946	else
3947
3948	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
3949	actionout[$i]=""
3950	fi
3951	fi
3952
3953
3954	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
3955	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
3956	# REMOTE-RECHNUNGEN
3957	if [[ "${actionout[$i]}" = tra ]]
3958	then
3959	if [[ $localhost != $fromhost ]]
3960	then
3961	if [[ $localhost = ibmh \|\| $localhost = nech ]]
3962	then
3963
3964	# TRANSFER IN EIGENSTAENDIGEM JOB
3965	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
3966	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
3967	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
3968	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
3969
3970	echo "set -x" > transfer_${localout[$i]}
3971	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
3972
3973	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
3974	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
3975	printf "\n or higher cycle\n"
3976	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
3977
3978	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
3979
3980	if [[ $localhost = nech ]]
3981	then
3982	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
3983	else
3984	if [[ $LOGNAME = b323013 ]]
3985	then
3986	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3987	else
3988	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
3989	fi
3990	fi
3991
3992	else
3993
3994	# TRANSFER INNERHALB DIESES JOBS
3995	transfer_failed=false
3996	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
3997	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
3998	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
3999	[[ $? != 0 ]] && transfer_failed=true
4000
4001	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4002	# LOKALER MASCHINE ANLEGEN
4003	if [[ $transfer_failed = true ]]
4004	then
4005	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4006	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4007
4008	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4009	# ANLEGEN
4010	eval local_catalog=${pathout[$i]}
4011	if [[ ! -d $local_catalog ]]
4012	then
4013	printf " *** local directory does not exist. Trying to create:\n"
4014	printf " $local_catalog \n"
4015	mkdir -p $local_catalog
4016	fi
4017
4018	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4019	transfer_problems=true
4020	fi
4021	fi
4022	else
4023
4024	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4025	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4026	actionout[$i]=a
4027	fi
4028	fi
4029
4030
4031	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4032	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4033	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4034	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4035	if [[ "${actionout[$i]}" = fl ]]
4036	then
4037	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4038	chmod g+rx $tmp_data_catalog
4039	if [[ $files_for_pes = false ]]
4040	then
4041	printf "\n >>> OUTPUT: ${localout[$i]} to"
4042	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4043	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4044	else
4045	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4046	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4047	mkdir $tmp_data_catalog/${frelout[$i]}
4048	cd ${localout[$i]}
4049	for file in $(ls *)
4050	do
4051	ln -f $file $tmp_data_catalog/${frelout[$i]}
4052	done
4053	cd $TEMPDIR
4054	fi
4055
4056
4057	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4058	if [[ $store_on_archive_system = true ]]
4059	then
4060
4061	if [[ $archive_system = asterix ]]
4062	then
4063	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4064	if [[ $files_for_pes = false ]]
4065	then
4066	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4067	else
4068	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4069	fi
4070	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4071	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4072	echo "then" >> archive_${frelout[$i]}
4073	echo " do_stageout=false" >> archive_${frelout[$i]}
4074	echo "else" >> archive_${frelout[$i]}
4075	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4076	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4077	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4078	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4079	if [[ $files_for_pes = false ]]
4080	then
4081	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4082	else
4083	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4084	fi
4085	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4086	echo "fi" >> archive_${frelout[$i]}
4087	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4088	elif [[ $archive_system = DMF ]]
4089	then
4090	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4091	if [[ $files_for_pes = false ]]
4092	then
4093	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4094	locat=DMF
4095	exit
4096	else
4097	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4098	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4099	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4100	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4101	fi
4102	elif [[ $archive_system = tivoli ]]
4103	then
4104	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4105	if [[ $files_for_pes = false ]]
4106	then
4107	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4108	echo "set -x" >> archive_${frelout[$i]}
4109	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4110	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4111	else
4112
4113	echo "set -x" >> archive_${frelout[$i]}
4114	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4115	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4116	cd $tmp_data_catalog
4117	all_files=`ls -1 ${frelout[$i]}/*`
4118	cd - > /dev/null
4119	(( inode = 0 ))
4120	(( tp1 = tasks_per_node + 1 ))
4121	while (( inode < nodes ))
4122	do
4123	# echo "*** all_files = \"$all_files\" "
4124	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4125	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4126	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4127	# echo "*** files = \"$files\" "
4128	# echo "*** all_files = \"$all_files\" "
4129	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4130	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4131	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4132	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4133	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4134	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4135	(( inode = inode + 1 ))
4136	done
4137	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4138	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4139	fi
4140	elif [[ $archive_system = ut ]]
4141	then
4142	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4143	if [[ $files_for_pes = false ]]
4144	then
4145	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4146	echo "set -x" >> archive_${frelout[$i]}
4147	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4148	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4149	else
4150
4151	echo "set -x" >> archive_${frelout[$i]}
4152	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4153	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4154	cd $tmp_data_catalog
4155	all_files=`ls -1 ${frelout[$i]}/*`
4156	cd - > /dev/null
4157	(( inode = 0 ))
4158	(( tp1 = tasks_per_node + 1 ))
4159	while (( inode < nodes ))
4160	do
4161	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4162	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4163	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4164	(( inode = inode + 1 ))
4165	done
4166	fi
4167	elif [[ $archive_system = none ]]
4168	then
4169	printf " +++ archiving on $localhost not available!\n"
4170	fi
4171
4172	if [[ $archive_system != none ]]
4173	then
4174	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4175	then
4176	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4177	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4178	elif [[ $localhost = nech ]]
4179	then
4180	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4181	fi
4182	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4183	fi
4184	else
4185	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4186	fi
4187
4188
4189	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4190	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4191	if [[ $files_for_pes = false ]]
4192	then
4193	cat /dev/null > ${pathout[$i]}
4194	else
4195	mkdir -p ${pathout[$i]}
4196	fi
4197
4198	fi
4199
4200
4201	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4202	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4203	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4204	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4205	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4206	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4207	if [[ "${actionout[$i]}" = ar ]]
4208	then
4209	if [[ $files_for_pes = false ]]
4210	then
4211	printf "\n >>> OUTPUT: ${localout[$i]} to"
4212	printf "\n ${pathout[$i]}"
4213	printf "\n File will be copied to archive-system ($archive_system) !\n"
4214	else
4215	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4216	printf "\n ${pathout[$i]}"
4217	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4218	fi
4219	mv ${localout[$i]} ${frelout[$i]}
4220
4221	file_saved=false
4222
4223	if [[ $archive_system = asterix ]]
4224	then
4225	do_stageout=true
4226	(( stageout_anz = 0 ))
4227	while [[ $do_stageout = true ]]
4228	do
4229	if [[ $files_for_pes = false ]]
4230	then
4231	stageout ${frelout[$i]} > STAGE_OUTPUT
4232	else
4233	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4234	fi
4235	cat STAGE_OUTPUT
4236	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4237	then
4238	file_saved=true
4239	do_stageout=false
4240	else
4241	if [[ $files_for_pes = false ]]
4242	then
4243	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4244	else
4245	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4246	fi
4247	(( stageout_anz = stageout_anz + 1 ))
4248	if (( stageout_anz == 10 ))
4249	then
4250	printf "\n +++ stoped after 10 unsuccessful tries!"
4251	archive_save=false
4252	do_stageout=false
4253	else
4254	printf "\n *** new try to store on archive after 15 min:"
4255	sleep 900
4256	fi
4257	fi
4258	done
4259	elif [[ $archive_system = DMF ]]
4260	then
4261	if [[ $files_for_pes = false ]]
4262	then
4263	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4264	locat=DMF
4265	exit
4266	else
4267	rm -rf $ARCHIVE/${frelout[$i]}
4268	cp -r ${frelout[$i]} $ARCHIVE
4269	fi
4270	file_saved=true
4271	elif [[ $archive_system = tivoli ]]
4272	then
4273	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4274	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4275	# GELEGT WERDEN
4276	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4277	chmod g+rx $tmp_data_catalog
4278	if [[ $files_for_pes = false ]]
4279	then
4280	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4281	else
4282	mkdir $tmp_data_catalog/${frelout[$i]}
4283	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4284	fi
4285
4286	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4287	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4288	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4289	if [[ $files_for_pes = false ]]
4290	then
4291	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4292	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4293	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4294	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4295	else
4296	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4297	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4298	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4299	fi
4300
4301	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4302	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4303	file_saved=true
4304
4305	elif [[ $archive_system = ut ]]
4306	then
4307	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4308	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4309	# GELEGT WERDEN
4310	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4311	chmod g+rx $tmp_data_catalog
4312	if [[ $files_for_pes = false ]]
4313	then
4314	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4315	else
4316	mkdir $tmp_data_catalog/${frelout[$i]}
4317	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4318	fi
4319
4320	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4321	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4322	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4323	if [[ $files_for_pes = false ]]
4324	then
4325	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4326	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4327	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4328	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4329	else
4330	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4331	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4332	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4333	fi
4334
4335	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4336	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4337	file_saved=true
4338
4339	else
4340	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4341	archive_save=false
4342	fi
4343	if [[ $file_saved = true ]]
4344	then
4345	if [[ $files_for_pes = false ]]
4346	then
4347	cat /dev/null > ${pathout[$i]}
4348	else
4349	mkdir -p ${pathout[$i]}
4350	fi
4351	fi
4352	fi
4353
4354	# APPEND AUF LOKALER MASCHINE
4355	if [[ "${actionout[$i]}" = "a" ]]
4356	then
4357	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4358	then
4359	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4360	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4361	else
4362	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4363	cat ${localout[$i]} >> ${pathout[$i]}
4364	fi
4365	fi
4366
4367	# KOPIEREN AUF LOKALER MASCHINE
4368	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4369	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4370	then
4371
4372	# KOPIEREN AUF EINPROZESSORMASCHINE
4373	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4374	then
4375	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4376	if [[ $link_local_output = true ]]
4377	then
4378	printf " using ln -f\n"
4379	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4380	fi
4381	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4382	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4383	then
4384	if [[ $link_local_output = true ]]
4385	then
4386	printf " ln failed, using cp...\n"
4387	fi
4388	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4389	fi
4390	else
4391	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4392	if [[ $link_local_output = true ]]
4393	then
4394	printf " using ln -f\n"
4395	ln -f ${localout[$i]} ${pathout[$i]}
4396	fi
4397	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4398	if [[ ! -f "${pathout[$i]}" ]]
4399	then
4400	if [[ $link_local_output = true ]]
4401	then
4402	printf " ln failed, using cp...\n"
4403	fi
4404	cp ${localout[$i]} ${pathout[$i]}
4405	fi
4406	fi
4407
4408	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4409	then
4410
4411	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4412	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4413	# WIRD DANN KOPIERT
4414	# PER MOVE UMBENANNT WERDEN
4415	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4416	if [[ $link_local_output = true ]]
4417	then
4418	printf " using ln -f\n"
4419	mkdir ${pathout[$i]}
4420	cd ${localout[$i]}
4421	for file in $(ls *)
4422	do
4423	ln -f $file ${pathout[$i]}
4424	done
4425	cd $TEMPDIR
4426	fi
4427	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4428	if [[ ! -f "${pathout[$i]}/_0000" ]]
4429	then
4430	if [[ $link_local_output = true ]]
4431	then
4432	printf " ln failed for .../_0000, using cp...\n"
4433	fi
4434	cp -r ${localout[$i]} ${pathout[$i]}
4435	fi
4436
4437	fi
4438	fi
4439	done
4440	if (( i != 0 ))
4441	then
4442	if [[ $transfer_problems = true ]]
4443	then
4444	printf "\n$striche\n *** OUTPUT-files saved"
4445	printf "\n +++ WARNING: some data transfers failed! \n"
4446	else
4447	printf "\n$striche\n *** all OUTPUT-files saved \n"
4448	fi
4449	fi
4450
4451
4452	# EVENTUELL FOLGEJOB STARTEN
4453	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4454	if [[ -f CONTINUE_RUN ]]
4455	then
4456
4457	if [[ $archive_save = true ]]
4458	then
4459
4460	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4461	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4462	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4463	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4464	# HANDEN
4465	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4466	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4467	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4468	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4469	then
4470	mc=`echo $mc \| sed 's/#/f/g'`
4471	fi
4472
4473
4474	# JOB STARTEN
4475	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4476	echo " $mc"
4477	printf "\n$striche\n"
4478	if [[ $localhost != $fromhost ]]
4479	then
4480
4481	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4482	then
4483	echo "*** ssh will be used to initiate restart-runs!"
4484	echo " return_addres=\"$return_addres\" "
4485	echo " return_username=\"$return_username\" "
4486	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4487	then
4488	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4489	else
4490	if [[ $localhost = ibmkisti ]]
4491	then
4492	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4493	else
4494	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4495	fi
4496	fi
4497	else
4498	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4499	locat=restart; exit
4500	fi
4501
4502	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4503	# DER AKTUELLE JOB ENDET
4504	if [[ $queue = special1q ]]
4505	then
4506	sleep 120
4507	else
4508	sleep 30
4509	fi
4510
4511	else
4512
4513	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4514	# RUFEN WERDEN, AUSSER AUF lcfimm
4515	cd $LOCAL_PWD
4516	if [[ $localhost = lcfimm ]]
4517	then
4518	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4519	else
4520	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4521	fi
4522	cd - > /dev/null
4523	fi
4524	printf "\n$striche\n *** restart-run initiated \n"
4525
4526
4527	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4528	# GEHOLT WORDEN SIND, LOESCHEN
4529	(( i = 0 ))
4530	while (( i < iin ))
4531	do
4532	(( i = i + 1 ))
4533	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4534	then
4535	rm -r $tmp_data_catalog/${frelin[$i]}
4536	fi
4537	done
4538
4539	else
4540
4541	printf "\n +++ no restart-run possible, since errors occured"
4542	printf "\n during the archive process"
4543	fi
4544
4545	fi
4546
4547
4548
4549	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4550	if [[ "$email_notification" != "none" ]]
4551	then
4552
4553	if [[ $localhost != $fromhost ]]
4554	then
4555	if [[ -f CONTINUE_RUN ]]
4556	then
4557	echo "PALM restart run necessary" > email_text
4558	echo "description header of actual run:" >> email_text
4559	cat CONTINUE_RUN >> email_text
4560	echo "mrun-command to restart:" >> email_text
4561	echo "$mc" >> email_text
4562	else
4563	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4564	fi
4565	mail $email_notification < email_text
4566	printf "\n *** email notification sent to \"$email_notification\" "
4567	fi
4568	fi
4569
4570
4571
4572	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4573	cd $HOME
4574	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4575
4576	else
4577
4578
4579	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4580	# CHENDE AKTIONEN DURCHGEFUEHRT
4581
4582	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4583	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4584	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4585	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4586	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4587	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4588	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4589	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4590	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4591	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4592	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4593	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4594	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4595	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4596	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4597	if [[ $use_openmp = true ]]
4598	then
4599	mrun_com=${mrun_com}" -O $threads_per_task"
4600	fi
4601	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4602	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4603	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4604	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4605	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4606	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4607	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4608	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4609	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4610	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4611	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4612	if [[ $do_remote = true ]]
4613	then
4614	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4615	fi
4616
4617
4618	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4619	jobfile=jobfile.$RANDOM
4620
4621
4622	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4623	echo "mkdir $TEMPDIR" >> $jobfile
4624	echo "cd $TEMPDIR" >> $jobfile
4625
4626
4627	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4628	if [[ $do_trace = true ]]
4629	then
4630	echo "set -x" >> $jobfile
4631	else
4632	echo "set +vx" >> $jobfile
4633	fi
4634
4635
4636	# initialize the environment and load modules
4637	if [[ "$init_cmds" != "" ]]
4638	then
4639	echo "$init_cmds" >> $jobfile
4640	fi
4641	if [[ "$module_calls" != "" ]]
4642	then
4643	echo "$module_calls" >> $jobfile
4644	fi
4645
4646
4647	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4648	# DATEI FUER DEN JOB
4649	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4650	then
4651
4652	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4653	# KOPIEREN
4654	if [[ $restart_run != true ]]
4655	then
4656	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4657	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4658	fi
4659
4660	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4661	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4662	echo "set -x" >> $jobfile
4663	if [[ $host = $localhost ]]
4664	then
4665	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4666	else
4667	if [[ $host != ibmkisti ]]
4668	then
4669	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4670	else
4671	# on KISTI's IBM firewall is only opened on interactive node
4672	echo "localdir=\`pwd\`" >> $jobfile
4673	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4674	fi
4675	fi
4676	echo "export SOURCES_COMPLETE=true" >> $jobfile
4677
4678	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4679	# ARBEITSVERZEICHNIS VERSCHIEBEN
4680	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4681	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4682	echo "execute_mrun=true" >> $jobfile
4683	echo " " >> $jobfile
4684
4685	else
4686
4687	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4688	# SOWIE GEGEBENENFALLS DES MAKEFILES
4689	if [[ $do_compile = true ]]
4690	then
4691
4692	source_catalog=SOURCES_FOR_RUN_$fname
4693
4694	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4695	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4696	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4697	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4698	echo "export SOURCES_COMPLETE=true" >> $jobfile
4699	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4700
4701	for filename in $source_list
4702	do
4703	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4704	echo "cat > $filename << \"%END%\"" >> $jobfile
4705	cat $source_catalog/$filename >> $jobfile
4706	echo " " >> $jobfile
4707	echo "%END%" >> $jobfile
4708	echo " " >> $jobfile
4709	done
4710
4711	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4712	echo "cat > Makefile << \"%END%\"" >> $jobfile
4713	cat $source_catalog/Makefile >> $jobfile
4714	echo " " >> $jobfile
4715	echo "%END%" >> $jobfile
4716	echo " " >> $jobfile
4717
4718	echo "cd - > /dev/null" >> $jobfile
4719
4720	fi
4721
4722
4723	# ABSPEICHERN DER KONFIGURATIONSDATEI
4724	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4725	echo "cat > $config_file << \"%END%\"" >> $jobfile
4726	cat $config_file >> $jobfile
4727	echo "%END%" >> $jobfile
4728	echo " " >> $jobfile
4729
4730
4731	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4732	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4733	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4734	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4735	echo "%END%" >> $jobfile
4736	echo "chmod u+x $mrun_script_name" >> $jobfile
4737	echo "execute_mrun=true" >> $jobfile
4738	echo " " >> $jobfile
4739
4740	fi
4741
4742
4743	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
4744	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
4745	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
4746	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
4747	if [[ $do_remote = true ]]
4748	then
4749	(( i = 0 ))
4750	while (( i < iin ))
4751	do
4752	(( i = i + 1 ))
4753	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
4754	if [[ "${transin[$i]}" = job ]]
4755	then
4756	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
4757	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
4758	echo " " >> $jobfile
4759	echo "%END%" >> $jobfile
4760	else
4761	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
4762	fi
4763
4764	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
4765	echo "if [[ \$? = 1 ]]" >> $jobfile
4766	echo "then" >> $jobfile
4767	echo " echo \" \" " >> $jobfile
4768	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
4769	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
4770	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
4771	echo " execute_mrun=false" >> $jobfile
4772	echo "fi" >> $jobfile
4773	done
4774	fi
4775
4776	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
4777	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
4778	echo "LOCAL_PWD=$working_directory" >> $jobfile
4779	echo "export LOCAL_PWD" >> $jobfile
4780
4781	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
4782	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
4783	echo "export LOCAL_MRUN_PATH" >> $jobfile
4784
4785	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
4786	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
4787	then
4788	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
4789	fi
4790
4791	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
4792	echo "set -x" >> $jobfile
4793	echo "queue=$queue" >> $jobfile
4794	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
4795
4796	echo 'ls -al; echo `pwd`' >> $jobfile
4797	echo "cd \$HOME" >> $jobfile
4798	echo "rm -rf $TEMPDIR" >> $jobfile
4799
4800
4801
4802
4803	# JOB PER SUBJOB STARTEN
4804	if [[ $silent = false ]]
4805	then
4806	printf "\n "
4807	else
4808	printf "\n\n"
4809	fi
4810
4811	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
4812	rm -rf $jobfile
4813
4814
4815	fi # ENDE REMOTE-TEIL
4816
4817
4818
4819	# ENDE DER PROZEDUR

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