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source: palm/trunk/SCRIPTS/mrun @ 1047

Last change on this file since 1047 was 1047, checked in by maronga, 11 years ago
last commit documented / added nc2vdf
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1	#!/bin/ksh
2
3	#--------------------------------------------------------------------------------#
4	# This file is part of PALM.
5	#
6	# PALM is free software: you can redistribute it and/or modify it under the terms
7	# of the GNU General Public License as published by the Free Software Foundation,
8	# either version 3 of the License, or (at your option) any later version.
9	#
10	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
11	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
12	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
13	#
14	# You should have received a copy of the GNU General Public License along with
15	# PALM. If not, see <http://www.gnu.org/licenses/>.
16	#
17	# Copyright 1997-2012 Leibniz University Hannover
18	#--------------------------------------------------------------------------------#
19	#
20	# Current revisions:
21	# -----------------
22	#
23	# Former revisions:
24	# -----------------
25	# $Id: mrun 1047 2012-11-09 15:32:58Z maronga $
26	#
27	# 1046 2012-11-09 14:38:45Z maronga
28	# code put under GPL (PALM 3.9)
29	#
30	# mrun - script for running PALM jobs
31
32
33	# Procedure for interactive/batch PALM runs (initial runs and automatic
34	# restart runs)
35
36	# Last changes:
37	# 03/03/94 - Siggi - Entwicklungsbeginn
38	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
39	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
40	# zelne Variable exportiert. Dies ist noetig, weil an-
41	# sonsten irgendein Speicher ueberlaeuft und von mrun
42	# aufgerufene Programme (z.B. stageout) mit Fehlern
43	# abbrechen (too many arguments)
44	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
45	# defaultmaessig im RRZN-Profile eingeschaltet
46	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
47	# wegfallen
48	# 25/04/00 - Siggi - Version 1.5
49	# remote_addres und remote_user in return_addres bzw.
50	# return_username umbenannt, return_username wird dem
51	# mrun-Aufruf im Job ueber Option -U mitgegeben.
52	# Neue Variable remote_username, die beim interaktiven
53	# mrun-Aufruf zwingend ueber die neue Option -u oder
54	# in der Konfigurationsdatei angegeben werden muss.
55	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
56	# Version 1.7
57	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
58	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
59	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
60	# zu bestimmen; Praeprozessoroptionen haben nun alle
61	# die Form -Dtext=text, weil auf IBM sonst text durch
62	# die leere Zeichenkette ersetzt wird
63	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
64	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
65	# (-D$OMP=OMP) in order to avoid problems with
66	# OMP_NUM_THREADS
67	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
68	# tar files, one for each node used
69	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
70	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
71	# 17/01/05 - Siggi - job for data transfer to local machine now within
72	# job class c1 (HLRN)
73	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
74	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
75	# base filename and cycle number
76	# 16/02/05 - Gerald - hababai validated
77	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
78	# 29/03/05 - Marcus - berni*-en0 validated
79	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
80	# 24/04/05 - Siggi - netcdf support on lcmuk
81	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
82	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
83	# number) can now be used within interactive runs
84	# 12/05/05 - Siggi - netcdf support on ibm
85	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
86	# 18/05/05 - Siggi - netcdf support on nec
87	# 24/05/05 - Siggi - netcdf support on ibms
88	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
89	# to 30 seconds
90	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
91	# PATH is temporarily set)
92	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
93	# caused warnings in the job protocol
94	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
95	# 25/10/05 - Siggi - error in listing files for getting the cycle number
96	# removed
97	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
98	# realized by file attribute trpe
99	# 28/10/05 - Siggi - if existing, the file extension is output in case
100	# of missing input file - no job abort in case of
101	# missing input files with file extensions
102	# (preliminary solution)
103	# 31/10/05 - Siggi - data transfer from nech now within seperate job
104	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
105	# 07/12/05 - Siggi - gallego and elephanta admitted
106	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
107	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
108	# 20/01/06 - Siggi - cpp directive for ibmy
109	# 09/02/06 - Siggi - ibmy admitted for batch mode
110	# 13/04/06 - Siggi - ostria admitted
111	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
112	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
113	# optimization of OpenMP runs (option stacksize is
114	# necessary for large gridpoint numbers because
115	# otherwise a segmentation fault occurs)
116	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
117	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
118	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
119	# 20/09/06 - Marcus - add DVRP library on nech
120	# 24/10/06 - Siggi - Environment variables for PALM steering are written
121	# on local NAMELIST file ENVPAR
122	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
123	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
124	# 06/02/07 - Siggi - add DVRP library on lcmuk
125	# 07/02/07 - Siggi - revision of source code handling, source code is
126	# now expected in directory given by source_path and
127	# not in the current working directory, source code
128	# files provided in add_source_path are allways
129	# compiled, source code to be compiled is allways
130	# sampled in SOURCES_FOR_RUN_$fname which is a
131	# subdirectory of the current working directory,
132	# -s TEST changed to -s WRITE_PERMIT or -s WP,
133	# adapted for RIAM (neck)
134	# bugfix for cycle number of output file (extout)
135	# all hpmuk-related code removed
136	# 14/02/07 - Siggi - dvrp support for neck added
137	# 28/02/07 - Siggi - empty lines in configuration file are accepted
138	# mrun_path replaced by PALM_BIN,
139	# all machines are calling interpret_config.x
140	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
141	# output
142	# 16/03/07 - Siggi - adjustments for lctit
143	# 29/03/07 - Siggi - global revision transfered to batch job by new
144	# option -G
145	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
146	# + netcdf/dvrp-options are read from configuration
147	# file, host identifier (local_host) is read from
148	# config file, code related to ftp filetransfer
149	# removed (incl. option -f)
150	# 19/06/07 - Siggi - time limit for cdata jobs increased
151	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
152	# if new option -Y (coupling) is given,
153	# output of executables to aout_output removed,
154	# messages are immediately written to stdout instead
155	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
156	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
157	# variables out to the nodes in coupled mode -disabled-
158	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
159	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
160	# environment variables out to the nodes in coupled mode
161	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
162	# suggestions
163	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
164	# argument -g group_number, admit all sla* node_usage
165	# queues
166	# 30/10/07 - Marcus - further adjustments for queues on lctit
167	# 14/02/08 - Bjoern - link of restart files with long file name possible
168	# 28/02/08 - Marcus - If environment variable link_local_output is set to
169	# true, mrun tries "ln -f" on local output and resorts
170	# to "cp" or "cp -r" on error
171	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
172	# which allows the user to choose his own job catalog
173	# by setting job_catalog in the configuration file
174	# (default is ~/job_queue),
175	# workaround for mpiexec with -env option,
176	# adjustments for lcxt4 (Bergen Center for Computational
177	# Science)
178	# 22/05/08 - Marcus - If environment variable link_local_input is set to
179	# true, mrun tries "ln -f" on local input and resorts
180	# to "cp" or "cp -r" on error
181	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
182	# 14/07/08 - Siggi - adjustments for lcsgih
183	# 08/08/08 - Marcus - typo removed in lcxt4 branch
184	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
185	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
186	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
187	# argument
188	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
189	# file
190	# 11/11/08 - Siggi - rules for using user code files changed: user
191	# code splitted into one file per subroutine,
192	# user can provide his/her own makefile, only
193	# default source-code filenames are allowed
194	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
195	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
196	# with environment variable mpilib
197	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
198	# using environment variable totalview
199	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
200	# interactive runs
201	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
202	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
203	# dvr streaming server is automatically started using
204	# new variable dvr_server and a configuration file
205	# .dvrserver.config,
206	# processing of dvr output files using new script
207	# process_dvr_output implemented, in order to make
208	# dvr application more user friendly
209	# 20/03/09 - Marcus - update of n1ge command for lctit
210	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
211	# to be followed by a coupled atmosphere-ocean run
212	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
213	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
214	# 08/07/09 - Siggi - default value for email_notification is none,
215	# option -e added to subjob
216	# 19/08/09 - Marcus - MPI debug option
217	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
218	# 25/08/09 - BjornM - adpated for lck
219	# 26/08/09 - Siggi - additional environment variables for mpt on ice2
220	# 26/08/09 - Marcus - adjustment for ice2 on lcsgib
221	# 29/09/09 - Siggi - default value for archiving is false, option "-A"
222	# switches on archiving, archiving on SGI-ICE enabled
223	# 16/10/09 - Carolin- adjustments for archiving on SGI-ICE of binary files;
224	# adjustment for special1q
225	# 18/12/09 - Carolin- modification of archiving (permq)
226	# 01/02/10 - Siggi - adapted for lcxt5m and lckyoto (Fujitsu HX600)
227	# 03/02/10 - Siggi - make options (mopts) to be set by configuration file
228	# implemented
229	# 08/02/10 - Siggi - loading of modules now controlled via configuration
230	# file (modules)
231	# 02/03/10 - Siggi - for each block in the configuration file, separate
232	# utility programs are used, combine_plot_fields is
233	# directly called and must not be given by an output
234	# command in the configuration file any more
235	# 15/06/10 - Rieke - ssh from compute nodes to login nodes on hosts
236	# lcsgih/lcsgib is done using the names
237	# hicegate0/bicegate0 instead of the IP addresses
238	# 17/08/10 - BjornM - adjustments for interactive runs on lcxt4
239	# 07/09/10 - Siggi - bugfix for wrong netcdf/3.6.3 module on lcsgi
240	# 08/12/10 - Siggi - new handling of openmp/hybrid runs, option -O
241	# has now argument threads_per_task
242	# adjustments for Kyushu Univ. (lcrte, ibmku)
243	# 14/12/10 - Siggi - adjustments for new Tsubame system at Tokyo
244	# institute of technology (lctit)
245	# 23/12/10 - Micha - different number of processors in ocean and
246	# atmosphere is now allowed
247	# 02/02/10 - Siggi - further adjustments on Tsubame and concerning openMP
248	# usage
249	# 09/03/10 - Siggi - adjustments for ibmkisti, mpt bugfix for netCDF4
250	# usage, totalview usage extended
251	# 17/03/11 - Siggi - adjustments for openmp usage on ibmkisti
252	# 03/04/11 - Micha - added lckordi
253	# 06/04/11 - BjornM - bugfix for runs with mpt on lcsgi
254	# 17/08/11 - Siggi - extensions for impi library
255	# 18/08/11 - Siggi - bugfix for local append of output files with suffix
256	# (.nc)
257	# 18/08/11 - Marcus - support for Linux OS with German locale
258	# - properly report hosts on general Linux clusters
259	# 29/08/11 - BjornW - adapted for lcflow (ForWind cluster in Oldenburg)
260	# 29/08/11 - Carolin- initiating restart-run: adjustment of the path at
261	# IMUK
262	# 15/09/11 - Siggi - new option -w tp set the maximum number of parallel
263	# io streams, option -T is obligatory from now on
264	# 25/01/12 - BjornM - a namelist file check prior to the model run has
265	# been implemented (check_namelist_files).
266	# New option -z can be used to skip the check
267	# 03/02/12 - BjornM - namelist file check temporary disabled
268	# until severel bugs are fixed
269	# 08/02/12 - BjornM - bugfixes: skipping namelist file check in case of
270	# restart runs. check is now possible with topography
271	# and the -v (silent) option is considered
272	# 14/02/12 - BjornM/- bugfix: removed slash in \$queue, changed default
273	# Farah queue for lcsgi to testq, since bigq is not
274	# available on ice1
275	# 16/02/12 - BjornM - bugfix: replaced $localhost by $host in the ENVPAR
276	# file, which is generated for the namelist file check
277	# 17/02/12 - Siggi - -z included in description of options (mrun ?)
278	# 22/02/12 - Siggi - -s info updated
279	# 22/02/12 - Siggi - case "-s WP" removed
280	# 28/02/12 - BjornM - further adjustments for namelist file check
281	# 09/03/12 - Siggi - -T option not obligatory for lcflow
282	# 12/03/12 - Siggi - tasks_per_node divisor check not for lcflow
283	# 21/03/12 - Matthias - default compiler on ibmh changed
284	# 02/05/12 - Bjoern - lcxt4 is now lcxe6, adjustments for lcxe6,
285	# bugfixes for the parameter file check, initial
286	# commands on ssh calls sourced out to .mrun.config
287	# 05/06/12 - Bjoern - bugfixes for the parameter file check on lcxe6.
288	# combine_plot_fields can be switched off by the
289	# new mrun option -Z
290	# 08/06/12 - Bjoern - max_pr_user enabled for the namelist file check,
291	# sleep commands are now disabled in silent mode (-v)
292	# 06/08/12 - Bjoern - update: system update at imuk now requires (new)
293	# initial shell commands on ssh calls (automatic
294	# restart runs were not possible)
295	# 22/08/12 - Bjoern - bugfix: missing export statement in the previous
296	# update of the ssh calls
297	# 06/09/12 - Bjoern - typo removed: "-D_parallel" -> "-D__parallel"
298	# 02/10/12 - Siggi - adjusted for lcsb (urban00)
299	# 31/10/12 - Siggi - -T option not obligatory for lcxt5m,
300	# tasks_per_node not checked for this machine
301	# 01/11/12 - Siggi - adjusted for lckiaps
302	# 07/11/12 - Bjoern - parameter file check adapted for batch jobs on
303	# local host
304
305
306
307	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
308
309	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
310	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
311	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
312
313	AddFilenames=""
314	additional_conditions=""
315	add_source_path=""
316	afname=""
317	archive_save=true
318	archive_system=none
319	check_namelist_files=true
320	combine_plot_fields=true
321	compiler_name=""
322	cond1=""
323	cond2=""
324	config_file=.mrun.config
325	coupled_dist=""
326	coupled_mode="mpi1"
327	cpp_opts=""
328	cpp_options=""
329	cpumax=0
330	cpurest=0
331	delete_temporary_catalog=true
332	do_batch=false
333	do_compile=true
334	do_remote=false
335	do_stagein=true
336	do_stageout=true
337	do_trace=false
338	email_notification="none"
339	exclude=""
340	executable=""
341	execution_error=false
342	fimm=false
343	fname=test
344	fromhost=""
345	global_revision=""
346	group_number=none
347	host=""
348	host_file=""
349	hp=""
350	ignore_archive_error=false
351	input_list=""
352	interpreted_config_file=""
353	job_catalog="~/job_queue"
354	job_on_file=""
355	keep_data_from_previous_run=false
356	link_local_input=false
357	link_local_output=false
358	localhost_realname=$(hostname)
359	local_compile=false
360	local_dvrserver_running=.FALSE.
361	locat=normal
362	mainprog=""
363	makefile=""
364	max_par_io_str=""
365	mc=$0
366	while [[ $(echo $mc \| grep -c "/") != 0 ]]
367	do
368	mc=`echo $mc \| cut -f2- -d"/"`
369	done
370	module_calls=""
371	mrun_script_name=$mc
372	netcdf_inc=""
373	netcdf_lib=""
374	netcdf_support=false
375	node_usage=default
376	numprocs=""
377	numprocs_atmos=0
378	numprocs_ocean=0
379	OOPT=""
380	openmp=false
381	output_list=""
382	package_list=""
383	punkte="..........................................................."
384	queue=none
385	read_from_config=""
386	restart_run=false
387	if [[ `hostname` = rte10 ]]
388	then
389	return_addres=133.5.185.60
390	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
391	elif [[ `hostname` = climate0 ]]
392	then
393	return_addres=165.132.26.68
394	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
395	elif [[ `hostname` = urban00 ]]
396	then
397	return_addres=147.46.30.151
398	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
399	else
400	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
401	fi
402	return_password=""
403	return_username=$LOGNAME
404	remotecall=false
405	remote_username=""
406	run_coupled_model=false
407	run_mode=""
408	scirocco=false
409	store_on_archive_system=false
410	striche=" ----------------------------------------------------------------------------"
411	silent=false
412	source_list=""
413	source_path=SOURCE
414	tasks_per_node=""
415	threads_per_task=1
416	tmpcreate=false
417	tmp_data_catalog=""
418	transfer_problems=false
419	usern=$LOGNAME
420	use_openmp=false
421	working_directory=`pwd`
422	TOPT=""
423	XOPT=""
424	zeit=$( date \| cut -c 12-19 )
425
426	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
427	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
428
429	typeset -R30 calltime
430	typeset -L20 spalte1
431	typeset -L40 spalte2
432	typeset -L60 spalte3
433	typeset -L35 string1=`date`
434	typeset -L12 string2=$usern
435	typeset -L12 string3=$localhost_realname
436	typeset -L12 string4
437	typeset -L12 string5
438	typeset -L30 version="MRUN 2.0 Rev$Rev: 1047 $"
439
440
441
442	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
443	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
444
445	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
446	# EXPORTIERT WERDEN
447	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
448	export group_number input_list memory numprocs output_list queue run_mode
449
450
451
452	# FEHLERBEHANDLUNG
453	# BEI EXIT:
454	trap 'rm -rf $working_directory/tmp_mrun
455	if [[ $locat != localhost ]]
456	then
457	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
458	# then
459	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
460	#MRUN-calls on $localhost
461	#
462	#date and time user localhost remotehost termination mrun-command
463	#--------------------------------------------------------------------------------------------------------------------
464	#%STATEND%
465	# chmod 666 ${mrun_path}/statistik/mrun_statistik
466	# fi
467	#
468	# # EINTRAG IN DIE STATISTIK-DATEI
469	# string4=$host
470	# string5=$locat
471	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
472	# then
473	# if [[ $do_batch = true ]]
474	# then
475	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
476	# else
477	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
478	# fi
479	# fi
480	echo " " > /dev/null
481	fi
482
483	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
484	then
485
486	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
487	(( i = 0 ))
488	while (( i < iec ))
489	do
490	(( i = i + 1 ))
491	printf "\n *** Execution of ERROR-command:\n"
492	printf " >>> ${err_command[$i]}\n"
493	eval ${err_command[$i]}
494	done
495	if [[ -n $interpreted_config_file ]] then
496	rm -rf $interpreted_config_file
497	fi
498	if [[ -n .mrun_environment ]] then
499	rm -rf .mrun_environment
500	fi
501	if [[ $tmpcreate = true ]]
502	then
503	printf "\n *** Contents of \"$TEMPDIR\":\n"
504	ls -al; cd
505	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
506	fi
507	if [[ "$dvrserver_id" != "" ]]
508	then
509	echo "+++ killing dvrserver_id=$dvrserver_id"
510	kill $dvrserver_id
511	fi
512	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
513	then
514	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
515	fi
516	printf "\n\n+++ MRUN killed \n\n"
517	elif [[ $locat != control_c ]]
518	then
519	printf "\n\n --> all actions finished\n\n"
520	printf " Bye, bye $usern !!\n\n"
521	fi' exit
522
523
524	# BEI TERMINAL-BREAK:
525	trap 'rm -rf $working_directory/tmp_mrun
526	rm -rf $working_directory/tmp_check_namelist_files
527	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
528	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
529	then
530	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
531	fi
532	if [[ "$dvrserver_id" != "" ]]
533	then
534	echo "+++ killing dvrserver_id=$dvrserver_id"
535	kill $dvrserver_id
536	fi
537	printf "\n+++ MRUN killed by \"^C\" \n\n"
538	locat=control_c
539	exit
540	' 2
541
542
543	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
544	# BEEN SET
545	if [[ "$PALM_BIN" = "" ]]
546	then
547	printf "\n +++ environment variable PALM_BIN has not been set"
548	printf "\n please set it to the directory where the PALM scripts are located"
549	locat=palm_bin; exit
550	fi
551	export PATH=$PALM_BIN:$PATH
552
553
554
555	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
556	# FUER FOLGEJOBS BENOETIGT WIRD
557	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
558	do
559	case $option in
560	(a) afname=$OPTARG;;
561	(A) store_on_archive_system=true; mc="$mc -A";;
562	(b) do_batch=true; mc="$mc -b";;
563	(B) delete_temporary_catalog=false; mc="$mc -B";;
564	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
565	(C) restart_run=true; mc="$mc -C";;
566	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
567	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
568	(F) job_on_file="-D"; mc="$mc -F";;
569	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
570	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
571	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
572	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
573	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
574	(I) ignore_archive_error=true; mc="$mc -I";;
575	(k) keep_data_from_previous_run=true; mc="$mc -k";;
576	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
577	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
578	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
579	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
580	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
581	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
582	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
583	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
584	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
585	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
586	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
587	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
588	(S) read_from_config=false; mc="$mc -S";;
589	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
590	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
591	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
592	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
593	(v) silent=true; mc="$mc -v";;
594	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
595	(x) do_trace=true;set -x; mc="$mc -x";;
596	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
597	(y) ocean_file_appendix=true; mc="$mc -y";;
598	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
599	(z) check_namelist_files=false; mc="$mc -z";;
600	(Z) combine_plot_fields=false; mc="$mc -Z";;
601	(\?) printf "\n +++ unknown option $OPTARG \n"
602	printf "\n --> type \"$0 ?\" for available options \n"
603	locat=parameter;exit;;
604	esac
605	done
606
607
608	# EVTL. POSITIONSPARAMETER EINLESEN
609	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
610	shift OPTIND-1
611
612
613	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
614	if [[ "$1" = "?" ]]
615	then
616	(printf "\n *** mrun can be called as follows:\n"
617	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
618	printf "\n Description of available options:\n"
619	printf "\n Option Description Default-Value"
620	printf "\n -a base name of input files equiv. -d"
621	printf "\n -A archiving when using file-attribute fl"
622	printf "\n -b batch-job on local machine ---"
623	printf "\n -B do not delete temporary directory at end ---"
624	printf "\n -c configuration file .mrun.config"
625	printf "\n -d base name of files attached to program test"
626	printf "\n -D preprocessor(cpp)-directives \"\" "
627	printf "\n -F create remote job file only ---"
628	printf "\n -h execution host $localhost_realname"
629	printf "\n -i INPUT control list \"\" "
630	printf "\n -I archiving errors of previous batch-jobs"
631	printf "\n will be ignored"
632	printf "\n -k keep data from previous run"
633	printf "\n -K additional conditions for controling"
634	printf "\n usage of conditional code and"
635	printf "\n env-variables in configuration file \"\" "
636	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
637	printf "\n -M Makefile name Makefile"
638	printf "\n -n node usage (shared/not_shared) depending on -h"
639	printf "\n -o OUTPUT control list \"\" "
640	printf "\n -O use OpenMP ---"
641	printf "\n -p software package list \"\" "
642	printf "\n -q queue \"$queue\" "
643	printf "\n -r run control list (combines -i -o) \"\" "
644	printf "\n -s filenames of routines to be compiled \"\" "
645	printf "\n must end with .f, .f90, .F, or .c !"
646	printf "\n use \"..\" for more than one file and wildcards"
647	printf "\n -s LM compiles all locally modified files"
648	printf "\n -S config file interpreted by shellscript ---"
649	printf "\n -t allowed cpu-time in seconds (batch) 0"
650	printf "\n -T tasks per node depending on -h"
651	printf "\n -u username on remote machine \"\" "
652	printf "\n -v no prompt for confirmation ---"
653	printf "\n -w maximum parallel io streams as given by -X"
654	printf "\n -x tracing of mrun for debug purposes ---"
655	printf "\n -X # of processors (on parallel machines) 1"
656	printf "\n -y add appendix \"_O\" to all local output"
657	printf "\n files (ocean precursor runs followed by"
658	printf "\n coupled atmosphere-ocean runs) ---"
659	printf "\n -Y run coupled model, \"#1 #2\" with"
660	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
661	printf "\n -z disable a priori parameter file check ---"
662	printf "\n -Z skip combine_plot_fields at the end of "
663	printf "\n the simulation ---"
664	printf "\n "
665	printf "\n Possible values of positional parameter <modus>:"
666	printf "\n \"?\" - this outline \n\n") \| more
667	exit
668	elif [[ "$1" != "" ]]
669	then
670	printf "\n +++ positional parameter $1 unknown \n"
671	locat=parameter; exit
672	fi
673
674
675
676	# KURZE STARTMELDUNG
677	printf "\n*** $version "
678	printf "\n will be executed. Please wait ..."
679
680
681
682	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
683	if [[ ! -f $config_file ]]
684	then
685	printf "\n\n +++ configuration file: "
686	printf "\n $config_file"
687	printf "\n does not exist"
688	locat=connect; exit
689	fi
690
691
692	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
693	line=""
694	grep "%host_identifier" $config_file > tmp_mrun
695	while read line
696	do
697	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
698	then
699	HOSTNAME=`echo $line \| cut -d" " -s -f2`
700	host_identifier=`echo $line \| cut -d" " -s -f3`
701	if [[ $localhost_realname = $HOSTNAME ]]
702	then
703	localhost=$host_identifier
704	break
705	fi
706	fi
707	done < tmp_mrun
708
709	if [[ "$localhost" = "" ]]
710	then
711	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
712	printf "\n for local host \"$localhost_realname\"."
713	printf "\n Please add line"
714	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
715	printf "\n to the configuration file."
716	locat=localhost; exit
717	fi
718
719
720	# HOSTSPEZIFISCHE VARIABLEN SETZEN
721	case $localhost_realname in
722	(r1\|r2\|h01\|b01) archive_system=tivoli;;
723	(cs*) archive_system=ut;;
724	(fimm.bccs.uib.no) fimm=true;;
725	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
726	(scirocco) scirocco=true;;
727	esac
728
729
730
731	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
732	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
733	[[ "$afname" = "" ]] && afname=$fname
734
735
736	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
737	if [[ "$run_mode" != "" ]]
738	then
739	input_list="$input_list $run_mode"
740	output_list="$output_list $run_mode"
741	fi
742
743
744	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
745	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
746	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
747	# STARTET)
748	if [[ "$fromhost" = "" ]]
749	then
750	fromhost=$localhost
751	fi
752
753
754	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
755	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
756	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
757	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
758	if [[ -n $host && "$host" != $localhost ]]
759	then
760	do_batch=true
761	do_remote=true
762	case $host in
763	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
764	(*) printf "\n"
765	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
766	printf "\n is not available"
767	locat=nqs; (( iec = 0 )); exit;;
768	esac
769	else
770	host=$localhost
771	fi
772
773
774	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
775	if [[ -n $additional_conditions ]]
776	then
777	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
778	cond1=`echo $additional_conditions \| cut -d" " -f1`
779	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
780	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
781	if [[ -n $dummy ]]
782	then
783	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
784	locat=options; exit
785	fi
786	block=_$cond1
787	[[ -n $cond2 ]] && block=${block}_$cond2
788	fi
789
790
791	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
792	if [[ $run_coupled_model = true ]]
793	then
794
795	if [[ -n $coupled_dist ]]
796	then
797
798	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
799	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
800
801	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
802	then
803
804	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
805	printf "\n PEs (total) : $numprocs"
806	printf "\n PEs (atmosphere): $numprocs_atmos"
807	printf "\n PEs (ocean) : $numprocs_ocean"
808	locat=coupling; exit
809
810	fi
811
812	else
813
814	(( numprocs_ocean = $numprocs / 2 ))
815	(( numprocs_atmos = $numprocs / 2 ))
816
817	fi
818	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
819
820	# GET coupled_mode FROM THE CONFIG FILE
821	line=""
822	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
823	while read line
824	do
825	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
826	then
827	coupled_mode="mpi2"
828	fi
829	done < tmp_mrun
830
831	fi
832
833
834	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
835	# ARCHIVIERUNG FEHLGESCHLAGEN IST
836	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
837	then
838	if [[ $ignore_archive_error = false ]]
839	then
840	printf "\n +++ data archiving of previous run failed"
841	printf "\n see directory \~/job_queue on remote machine"
842	locat=archive; exit
843	else
844	printf "\n +++ warning: data archiving in a previous run failed"
845	printf "\n MRUN continues, trying to get backup copy"
846	fi
847	fi
848
849
850
851	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
852	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
853	if [[ "$read_from_config" = false ]]
854	then
855
856	[[ $silent = false ]] && printf "\n Reading the configuration file... "
857	while read zeile
858	do
859	[[ $silent = false ]] && printf "."
860
861
862	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
863	# ERSETZEN
864	eval zeile=\"$zeile\"
865
866
867	# INTERPRETATION DER ZEILE
868	if [[ "$(echo $zeile)" = "" ]]
869	then
870	# LEERZEILE, KEINE AKTION
871	continue
872
873	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
874	then
875
876	# ZEILE IST KOMMENTARZEILE
877	true
878
879	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
880	then
881
882	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
883	zeile=$(echo $zeile \| cut -c2-)
884	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
885	var=`echo $zeile \| cut -d" " -f1`
886	value=`echo $zeile \| cut -d" " -s -f2`
887	for_host=`echo $zeile \| cut -d" " -s -f3`
888	for_cond1=`echo $zeile \| cut -d" " -s -f4`
889	for_cond2=`echo $zeile \| cut -d" " -s -f5`
890
891	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
892	then
893
894	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
895	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
896	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
897
898
899	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
900	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
901	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
902	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
903	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
904	# KONFIGURATIONSDATEI
905	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
906	then
907	eval $var=\$value
908
909	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
910	if [[ $do_trace = true ]]
911	then
912	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
913	fi
914	fi
915
916	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
917	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
918	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
919	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
920	if [[ $var = host ]]
921	then
922	if [[ -n $host && "$host" != $localhost ]]
923	then
924	do_batch=true
925	do_remote=true
926	case $host in
927	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
928	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
929	printf "\n is not available"
930	locat=nqs; exit;;
931	esac
932	else
933	host=$localhost
934	fi
935	fi
936
937	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
938	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
939	# DEN PROGRAMMEN BENOETIGT WERDEN
940	export $var
941	fi
942
943
944
945
946	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
947	then
948
949	# ZEILE DEFINIERT ERROR-KOMMANDO
950	(( iec = iec + 1 ))
951	zeile=$(echo $zeile \| cut -c4-)
952	err_command[$iec]="$zeile"
953
954	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
955	then
956
957	# ZEILE DEFINIERT INPUT-KOMMANDO
958	(( iic = iic + 1 ))
959	zeile=$(echo $zeile \| cut -c4-)
960	in_command[$iic]="$zeile"
961
962	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
963	then
964
965	# ZEILE DEFINIERT OUTPUT-KOMMANDO
966	(( ioc = ioc + 1 ))
967	zeile=$(echo $zeile \| cut -c4-)
968	out_command[$ioc]="$zeile"
969
970	else
971
972	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
973	# s2a: in/out - Feld
974	# s2b: loc - Feld (optional)
975	# s2c: tr/ar - Feld (optional)
976	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
977	s1=`echo $zeile \| cut -d" " -f1`
978	s2=`echo $zeile \| cut -d" " -s -f2`
979	s2a=$(echo $s2 \| cut -d":" -f1)
980	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
981	then
982	s2b=""
983	s2c=""
984	else
985	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
986	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
987	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
988	fi
989	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
990	s3=`echo $zeile \| cut -d" " -f3`
991	s4=`echo $zeile \| cut -d" " -s -f4`
992	s5=`echo $zeile \| cut -d" " -s -f5`
993	s6=`echo $zeile \| cut -d" " -s -f6`
994
995
996	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
997	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
998	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
999	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
1000	# HANDEN SEIN MUSS (D.H. s2b = loc)
1001	IFSALT="$IFS"; IFS="$IFS:"
1002	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
1003	then
1004	found=false
1005	for actual in $input_list
1006	do
1007	for formal in $s3
1008	do
1009	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
1010	done
1011	done
1012	if [[ $found = true ]]
1013	then
1014	(( iin = iin + 1 ))
1015	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
1016	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
1017	extin[$iin]=$s6
1018	fi
1019	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
1020	then
1021	found=false
1022	for actual in $output_list
1023	do
1024	for formal in $s3
1025	do
1026	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
1027	done
1028	done
1029	if [[ $found = true ]]
1030	then
1031	(( iout = iout + 1 ))
1032	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
1033	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
1034	fi
1035	elif [[ "$s2a" != in && "$s2a" != out ]]
1036	then
1037	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
1038	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
1039	locat=connect; exit
1040	fi
1041	IFS="$IFSALT"
1042	fi
1043	done < $config_file
1044
1045	else
1046
1047
1048	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
1049	[[ $silent = false ]] && printf "..."
1050	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
1051	export interpreted_config_file=.icf.$RANDOM
1052
1053
1054
1055	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
1056	# VERFUEGUNG STELLEN
1057	cat > .mrun_environment << %%END%%
1058	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
1059	config_file = '$config_file', do_remote = '$do_remote',
1060	do_trace = '$do_trace', host = '$host',
1061	input_list = '$input_list', icf = '$interpreted_config_file',
1062	localhost = '$localhost', output_list = '$output_list' /
1063
1064	%%END%%
1065
1066	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
1067	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
1068	mrun_memory=$memory
1069	mrun_group_number=$group_number
1070	mrun_cpumax=$cpumax
1071	mrun_numprocs=$numprocs
1072
1073	if [[ $localhost_realname = "sx-fep" ]]
1074	then
1075	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
1076	else
1077
1078	if [[ "$host" != $localhost ]]
1079	then
1080
1081	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
1082	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
1083	if [[ $? != 0 ]]
1084	then
1085	printf "\n\n +++ no interpret_config found"
1086	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
1087	locat=interpret_config; exit
1088	fi
1089	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
1090	$interpret_config_executable
1091
1092	else
1093
1094	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
1095	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
1096	then
1097	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
1098	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
1099	locat=interpret_config; exit
1100	else
1101	interpret_config${block}.x
1102	fi
1103
1104	fi
1105	fi
1106	rm .mrun_environment
1107
1108
1109	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
1110	chmod u+x $interpreted_config_file
1111	export PATH=$PATH:.
1112	. $interpreted_config_file
1113	rm $interpreted_config_file
1114
1115
1116	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
1117	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
1118	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
1119	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
1120	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
1121	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
1122	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
1123
1124	fi
1125
1126
1127	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
1128	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
1129	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
1130	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
1131	if [[ "$SOURCES_COMPLETE" = "" ]]
1132	then
1133
1134	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
1135	# VEREINBART WURDE
1136	source_path=""
1137	line=""
1138	grep "%source_path" $config_file > tmp_mrun
1139	while read line
1140	do
1141	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1142	then
1143	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
1144	then
1145	global_source_path=`echo $line \| cut -d" " -f2`
1146	fi
1147	fi
1148	done < tmp_mrun
1149
1150	line=""
1151	found=false
1152	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
1153	while read line
1154	do
1155	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
1156	then
1157	if [[ $found = true ]]
1158	then
1159	printf "\n\n +++ more than one source path found in configuration file"
1160	printf "\n for local host \"$localhost\" "
1161	locat=source_path; exit
1162	fi
1163	source_path=`echo $line \| cut -d" " -f2`
1164	found=true
1165	fi
1166	done < tmp_mrun
1167	rm tmp_mrun
1168
1169	if [[ "$source_path" = "" ]]
1170	then
1171	if [[ "$global_source_path" != "" ]]
1172	then
1173	source_path=$global_source_path
1174	else
1175	printf "\n\n +++ no source path found in configuration file"
1176	printf "\n for local host \"$localhost\" "
1177	locat=source_path; exit
1178	fi
1179	fi
1180	eval source_path=$source_path
1181
1182	if [[ ! -d $source_path ]]
1183	then
1184	printf "\n\n +++ source path \"$source_path\" on local host"
1185	printf "\n \"$localhost\" does not exist"
1186	locat=source_path; exit
1187	fi
1188
1189	fi
1190
1191
1192	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1193	# DURCH OPTION -G MITGETEILT)
1194	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1195	then
1196	global_revision=`svnversion $source_path 2>/dev/null`
1197	global_revision="Rev: $global_revision"
1198	fi
1199
1200
1201	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1202	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1203	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1204	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1205	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1206	if [[ -n $host && "$host" != $localhost ]]
1207	then
1208	do_batch=true
1209	do_remote=true
1210	case $host in
1211	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lcsb) true;;
1212	(*) printf "\n"
1213	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1214	printf "\n is not available"
1215	locat=nqs; (( iec = 0 )); exit;;
1216	esac
1217	else
1218	host=$localhost
1219	fi
1220
1221
1222	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1223	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1224	then
1225
1226	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1227	if [[ ! -n $numprocs ]]
1228	then
1229	printf "\n"
1230	printf "\n +++ option \"-K parallel\" requires additional specification"
1231	printf "\n of the number of processors to be used by"
1232	printf "\n mrun-option \"-X\" or by environment-variable"
1233	printf "\n \"numprocs\" in the configuration file"
1234	locat=numprocs; (( iec = 0 )); exit
1235	fi
1236
1237	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1238	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1239	# GESAMTPROZESSORANZAHL IST
1240	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1241	then
1242	printf "\n"
1243	printf "\n +++ option \"-T\" (tasks per node) is missing"
1244	printf "\n set -T option or define tasks_per_node in the config file"
1245	locat=tasks_per_node; (( iec = 0 )); exit
1246	fi
1247	if [[ $host != lcflow && $host != lcxt5m ]]
1248	then
1249	(( ival = $tasks_per_node ))
1250	(( pes = numprocs ))
1251	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1252	# then
1253	# (( pes = pes - 1 ))
1254	# fi
1255	(( ii = pes / ival ))
1256	if (( pes - ii * ival > 0 ))
1257	then
1258	printf "\n"
1259	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1260	printf "\n divisor of the total number of processors (option \"-X\")"
1261	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1262	locat=tasks_per_node; (( iec = 0 )); exit
1263	fi
1264	fi
1265
1266
1267	# IBMY HAT NUR EINEN KNOTEN
1268	if [[ $host = ibmy ]]
1269	then
1270	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1271	then
1272	printf "\n"
1273	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1274	printf "\n total number of processors (option \"-X\")"
1275	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1276	locat=tasks_per_node; (( iec = 0 )); exit
1277	fi
1278	fi
1279
1280
1281	# SETTINGS FOR SUBJOB-COMMAND
1282	TOPT="-T $tasks_per_node"
1283	OOPT="-O $threads_per_task"
1284
1285	# GESAMTZAHL DER KNOTEN BESTIMMEN
1286	if [[ "$tasks_per_node" != "" ]]
1287	then
1288	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1289	fi
1290
1291	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1292	# SETZEN
1293	if [[ $node_usage = default ]]
1294	then
1295	if [[ $host = ibms ]]
1296	then
1297	node_usage=shared
1298	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1299	then
1300	node_usage=singlejob
1301	else
1302	node_usage=not_shared
1303	fi
1304	fi
1305
1306	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1307	then
1308	printf "\n"
1309	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1310	printf "\n \"shared\" or \"not_shared\""
1311	locat=tasks_per_node; (( iec = 0 )); exit
1312	fi
1313
1314	fi
1315
1316	# PRUEFEN, OB HOSTFILE EXISTIERT
1317	if [[ -n $hostfile ]]
1318	then
1319	if [[ ! -f $hostfile ]]
1320	then
1321	printf "\n"
1322	printf "\n +++ hostfile \"$hostfile\" does not exist"
1323	locat=hostfile; exit
1324	fi
1325	fi
1326
1327	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1328	if [[ $host = ibmy && $do_remote = false ]]
1329	then
1330	if [[ ! -f $HOME/.rhosts ]]
1331	then
1332	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1333	printf "\n\n *** file:"
1334	printf "\n $HOME/.rhosts"
1335	printf "\n was created\n"
1336	fi
1337	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1338	then
1339	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1340	printf "\n\n *** file:"
1341	printf "\n $HOME/.rhosts"
1342	printf "\n was extended by the name of the current host\n"
1343	fi
1344	fi
1345
1346
1347	# Set default value for the maximum number of parallel io streams
1348	if [[ "$maximum_parallel_io_streams" = "" ]]
1349	then
1350	maximum_parallel_io_streams=$numprocs
1351	fi
1352
1353
1354	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1355	if [[ $queue = none ]]
1356	then
1357	case $host in
1358	(ibmh) queue=no_class;;
1359	(ibmkisti) queue=class.32plus;;
1360	(ibmy) queue=parallel;;
1361	(lckiaps) queue=normal;;
1362	(lckyoto) queue=ph;;
1363	(lcsgib) queue=testq;;
1364	(lcsgih) queue=testq;;
1365	(lctit) queue=S;;
1366	(nech) queue=none;;
1367	(necriam) queue=SP;;
1368	(unics) queue=unics;;
1369	esac
1370	fi
1371
1372
1373	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1374	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1375	# ERMITTELN
1376	(( i = 0 ))
1377	while (( i < iin ))
1378	do
1379	(( i = i + 1 ))
1380	(( maxcycle = 0 ))
1381
1382	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1383	if [[ "${actionin[$i]}" = di ]]
1384	then
1385	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1386	# REM-MASCHINE AUSWERTEN
1387	eval filename=${pathin[$i]}/${endin[$i]}
1388	else
1389	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1390	# REM-MASCHINE AUSWERTEN
1391	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1392	fi
1393	eval pathname=${pathin[$i]}
1394
1395	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1396	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1397	then
1398	filename_input=$filename
1399	fi
1400
1401	# PRUEFEN AUF VORHANDENSEIN
1402	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1403	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1404	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1405	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1406	then
1407	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1408	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1409	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1410	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1411	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1412	if [[ "${transin[$i]}" != "locopt" ]]
1413	then
1414	printf "\n\n +++ INPUT-file: "
1415	if [[ "${extin[$i]}" = "" ]]
1416	then
1417	printf "\n $filename"
1418	else
1419	printf "\n $filename.${extin[$i]}"
1420	fi
1421	printf "\n does not exist\n"
1422	locat=input; exit
1423	else
1424	transin[$i]="unavailable"
1425	fi
1426	else
1427
1428	# ZYKLUSNUMMER FESTSTELLEN
1429	ls -1 -d $filename > filelist 2>/dev/null
1430	ls -1 -d $filename.* >> filelist 2>/dev/null
1431	while read zeile
1432	do
1433	cycle=$(print $zeile \| cut -f2 -d".")
1434	if [[ "$cycle" = "$zeile" ]]
1435	then
1436	(( icycle = 0 ))
1437	elif [[ "$cycle" = "${extin[$i]}" ]]
1438	then
1439	(( icycle = 0 ))
1440	else
1441	(( icycle = $cycle ))
1442	fi
1443	if (( icycle > maxcycle ))
1444	then
1445	(( maxcycle = icycle ))
1446	file_to_be_used=$zeile
1447	fi
1448	done <filelist
1449	rm filelist
1450
1451	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1452	if (( maxcycle > 0 ))
1453	then
1454	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1455	then
1456	filename=${filename}.$maxcycle.${extin[$i]}
1457	else
1458	filename=${filename}.$maxcycle
1459	fi
1460	else
1461	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1462	then
1463	filename=${filename}.${extin[$i]}
1464	fi
1465	fi
1466
1467	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1468	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1469	absnamein[$i]=$filename
1470	if (( maxcycle > 0 ))
1471	then
1472	if [[ "${actionin[$i]}" = di ]]
1473	then
1474	frelin[$i]=${endin[$i]}.$maxcycle
1475	else
1476	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1477	fi
1478	else
1479	if [[ "${actionin[$i]}" = di ]]
1480	then
1481	frelin[$i]=${endin[$i]}
1482	else
1483	frelin[$i]=${afname}${endin[$i]}
1484	fi
1485	fi
1486
1487	fi
1488	done
1489
1490	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1491	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1492	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1493	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1494	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1495	(( i = 0 ))
1496	while (( i < iout ))
1497	do
1498	(( i = i + 1 ))
1499	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1500	then
1501	if [[ "${actionout[$i]}" = tr ]]
1502	then
1503	actionout[$i]=""
1504	elif [[ "${actionout[$i]}" = trpe ]]
1505	then
1506	actionout[$i]=pe
1507	elif [[ "${actionout[$i]}" = tra ]]
1508	then
1509	actionout[$i]=a
1510	fi
1511	(( maxcycle = 0 ))
1512	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1513	eval catalogname=${pathout[$i]}
1514	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1515	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1516	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1517	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1518	then
1519
1520	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1521	if cat /dev/null > $filename
1522	then
1523	rm $filename
1524	else
1525
1526	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1527	if [[ ! -d $catalogname ]]
1528	then
1529	if mkdir -p $catalogname
1530	then
1531	printf "\n\n *** directory:"
1532	printf "\n $catalogname"
1533	printf "\n was created\n"
1534	else
1535	printf "\n\n +++ OUTPUT-file:"
1536	printf "\n $filename"
1537	printf "\n cannot be created, because directory does not exist"
1538	printf "\n and cannot be created either"
1539	printf "\n"
1540	locat=output ; exit
1541	fi 2>/dev/null
1542	else
1543	printf "\n\n +++ OUTPUT-file:"
1544	printf "\n $filename"
1545	printf "\n cannot be created, although directory exists"
1546	printf "\n"
1547	locat=output ; exit
1548	fi
1549	fi 2>/dev/null
1550	else
1551
1552	# ZYKLUSNUMMER FESTSTELLEN
1553	ls -1 -d $filename > filelist 2>/dev/null
1554	ls -1 -d $filename.* >> filelist 2>/dev/null
1555	while read zeile
1556	do
1557	cycle=$(print $zeile \| cut -f2 -d".")
1558	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1559	then
1560	(( icycle = 1 ))
1561	else
1562	(( icycle = $cycle + 1 ))
1563	fi
1564	if (( icycle > maxcycle ))
1565	then
1566	(( maxcycle = icycle ))
1567	fi
1568	done <filelist
1569	rm filelist
1570	fi
1571
1572	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1573	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1574	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1575	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1576	if [[ "${actionout[$i]}" != a ]]
1577	then
1578	if (( maxcycle > 0 ))
1579	then
1580	filename=${filename}.$maxcycle
1581	if cat /dev/null > $filename
1582	then
1583	rm $filename
1584	else
1585	printf "\n +++ OUTPUT-file:"
1586	printf "\n $filename"
1587	printf "\n cannot be created"
1588	locat=output ; exit
1589	fi
1590	fi
1591	else
1592	(( maxcycle = maxcycle - 1 ))
1593	if (( maxcycle > 0 ))
1594	then
1595	filename=${filename}.$maxcycle
1596	fi
1597	fi
1598
1599	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1600	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1601	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1602	pathout[$i]=$filename
1603	if (( maxcycle > 0 ))
1604	then
1605	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1606	else
1607	frelout[$i]=${fname}${endout[$i]}
1608	fi
1609
1610	fi
1611	done
1612
1613
1614	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1615	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1616	then
1617	if [[ "$dvr_inc" = "" ]]
1618	then
1619	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1620	printf "\n This is required for the dvrp_graphics package.\n"
1621	locat=dvr; exit
1622	fi
1623	if [[ "$dvr_lib" = "" ]]
1624	then
1625	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1626	printf "\n This is required for the dvrp_graphics package.\n"
1627	locat=dvr; exit
1628	fi
1629	fi
1630
1631
1632	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1633	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1634	# UEBERSETZT ZU WERDEN)
1635	if [[ "$mainprog" = "" && "$executable" = "" ]]
1636	then
1637	printf "\n +++ neither main program nor executable defined"
1638	locat=source; exit
1639	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1640	then
1641	printf "\n +++ main program as well as executable defined"
1642	locat=source; exit
1643	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1644	then
1645	do_compile=false
1646	fi
1647
1648
1649	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1650	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1651	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1652	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1653	then
1654	rm -rf SOURCES_FOR_RUN_$fname
1655	mkdir SOURCES_FOR_RUN_$fname
1656	fi
1657
1658
1659	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1660	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1661	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1662	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1663	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1664	then
1665
1666	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1667
1668	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1669	then
1670
1671	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1672	source_list=""
1673	cd $source_path
1674
1675
1676	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1677	if [[ ! -d .svn ]]
1678	then
1679	printf "\n\n +++ source directory"
1680	printf "\n \"$source_path\" "
1681	printf "\n is not under control of \"subversion\"."
1682	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1683	fi
1684
1685
1686	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1687	Filenames=""
1688	svn status > tmp_mrun
1689	while read line
1690	do
1691	firstc=`echo $line \| cut -c1`
1692	if [[ $firstc = M \|\| $firstc = "?" ]]
1693	then
1694	Name=`echo "$line" \| cut -c8-`
1695	extension=`echo $Name \| cut -d. -f2`
1696	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1697	then
1698	Filenames="$Filenames "$Name
1699	fi
1700	fi
1701	done < tmp_mrun
1702
1703
1704	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1705	for dateiname in $Filenames
1706	do
1707	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1708	source_list=$source_list"$dateiname "
1709	done
1710
1711	cd - > /dev/null
1712
1713
1714	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1715	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1716	# VORHANDEN
1717	elif [[ "$source_list" != "" && $restart_run != true ]]
1718	then
1719
1720	cd $source_path
1721
1722	for filename in $source_list
1723	do
1724
1725	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1726	if [[ $(print $filename \| grep -c "/") != 0 ]]
1727	then
1728	printf "\n +++ source code file: $filename"
1729	printf "\n must not contain (\"/\") "
1730	locat=source; exit
1731	fi
1732
1733	if [[ ! -f $filename ]]
1734	then
1735	printf "\n +++ source code file: $filename"
1736	printf "\n does not exist"
1737	locat=source; exit
1738	else
1739	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1740	fi
1741
1742	done
1743
1744	cd - > /dev/null
1745
1746	fi
1747
1748
1749	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1750	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1751	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1752	if [[ $restart_run != true ]]
1753	then
1754
1755	if [[ ! -f "$source_path/$mainprog" ]]
1756	then
1757	printf "\n\n +++ main program: $mainprog"
1758	printf "\n does not exist in source directory"
1759	printf "\n \"$source_path\"\n"
1760	locat=source; exit
1761	else
1762	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1763	then
1764	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1765	source_list=${mainprog}" $source_list"
1766	fi
1767	fi
1768	fi
1769
1770
1771	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1772	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1773	if [[ "$restart_run" != true ]]
1774	then
1775	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1776	if [[ ! -f $makefile ]]
1777	then
1778	printf "\n +++ file \"$makefile\" does not exist"
1779	locat=make; exit
1780	else
1781	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1782	fi
1783	fi
1784
1785
1786	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1787	if [[ $restart_run != true && "$add_source_path" != "" ]]
1788	then
1789
1790	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1791	if [[ ! -d $add_source_path ]]
1792	then
1793	printf "\n\n +++ WARNING: additional source code directory"
1794	printf "\n \"$add_source_path\" "
1795	printf "\n does not exist or is not a directory."
1796	printf "\n No source code will be used from this directory!\n"
1797	add_source_path=""
1798	if [[ $silent == false ]]
1799	then
1800	sleep 3
1801	fi
1802	else
1803
1804	cd $add_source_path
1805	found=false
1806
1807	Names=$(ls -1 *.f90 2>&1)
1808	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1809	Names=$(ls -1 *.F90 2>&1)
1810	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1811	Names=$(ls -1 *.F 2>&1)
1812	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1813	Names=$(ls -1 *.f 2>&1)
1814	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1815	Names=$(ls -1 *.c 2>&1)
1816	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1817
1818	cd - > /dev/null
1819	cd SOURCES_FOR_RUN_$fname
1820
1821	# COPY MAKEFILE IF EXISTING
1822	if [[ -f $add_source_path/Makefile ]]
1823	then
1824	printf "\n\n *** user Makefile from directory"
1825	printf "\n \"$add_source_path\" is used \n"
1826	if [[ $silent == false ]]
1827	then
1828	sleep 1
1829	fi
1830	cp $add_source_path/Makefile .
1831	fi
1832
1833	for dateiname in $AddFilenames
1834	do
1835	if [[ -f $dateiname ]]
1836	then
1837	printf "\n +++ source code file \"$dateiname\" found in additional"
1838	printf "\n source code directory \"$add_source_path\" "
1839	printf "\n but was also given with option \"-s\" which means that it should be taken"
1840	printf "\n from directory \"$source_path\"."
1841	locat=source; exit
1842	fi
1843
1844	cp $add_source_path/$dateiname .
1845	source_list="$source_list $dateiname"
1846
1847	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1848	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1849	then
1850	printf "\n\n +++ user file \"$dateiname\" "
1851	printf "\n is not listed in Makefile \n"
1852	locat=source; exit
1853	else
1854
1855	# Default User-Interface von der Liste entfernen, falls Datei
1856	# ein User-Interface enthaelt
1857	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1858	# then
1859	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1860	# then
1861	# rm -rf user_interface.f90
1862	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1863	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1864	# printf "\n since a user-interface is found in file"
1865	# printf "\n \"$add_source_path/$dateiname\" \n"
1866	# sleep 3
1867	# else
1868	if [[ $found = false ]]
1869	then
1870	found=true
1871	printf "\n\n *** following user file(s) added to the"
1872	printf " files to be translated:\n "
1873	fi
1874	printf "$dateiname "
1875	if [[ $silent == false ]]
1876	then
1877	sleep 0.5
1878	fi
1879
1880	fi
1881	done
1882	[[ $found = true ]] && printf "\n"
1883	cd - > /dev/null
1884	fi
1885	fi
1886
1887
1888	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1889	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1890	if [[ $restart_run != true && -n $package_list ]]
1891	then
1892
1893	cd $source_path
1894
1895	for package in $package_list
1896	do
1897
1898	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1899
1900	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1901	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1902	# LIEFERT
1903	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1904
1905
1906	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1907	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1908	for source_list_name in $package_source_list
1909	do
1910	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1911	then
1912
1913	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1914	ending=`echo $source_list_name \| cut -f2 -d.`
1915	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1916	then
1917	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1918	source_list="$source_list $source_list_name"
1919	fi
1920	fi
1921	done
1922	done
1923
1924	cd - > /dev/null
1925	fi
1926
1927
1928	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1929	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1930	# if [[ "$restart_run" != true ]]
1931	# then
1932	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1933	# if [[ ! -f $makefile ]]
1934	# then
1935	# printf "\n +++ file \"$makefile\" does not exist"
1936	# locat=make; exit
1937	# else
1938	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1939	# fi
1940	# fi
1941
1942	fi # do_compile=true
1943
1944
1945	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1946	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1947	if [[ $do_compile = true ]]
1948	then
1949
1950	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1951	# ZUSAMMENSETZEN
1952	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1953	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1954	then
1955	cpp_options="${cpp_options},-D__ibm=__ibm"
1956	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1957	then
1958	cpp_options="$cpp_options -D__nec"
1959	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1960	then
1961	cpp_options="$cpp_options -D__lc"
1962	else
1963	cpp_options="$cpp_options -D__$localhost"
1964	fi
1965
1966	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1967	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1968	then
1969	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1970	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1971	else
1972	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1973	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1974	fi
1975
1976	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1977	if [[ -n $package_list ]]
1978	then
1979	for package in $package_list
1980	do
1981	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1982	then
1983	if [[ $package != "dvrp_graphics+1PE" ]]
1984	then
1985	cpp_options="${cpp_options},-D__$package=__$package"
1986	else
1987	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1988	export use_seperate_pe_for_dvrp_output=true
1989	fi
1990	else
1991	if [[ $package != "dvrp_graphics+1PE" ]]
1992	then
1993	cpp_options="$cpp_options -D__$package"
1994	else
1995	cpp_options="$cpp_options -D__dvrp_graphics"
1996	export use_seperate_pe_for_dvrp_output=true
1997	fi
1998	fi
1999	done
2000	fi
2001
2002	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
2003	if [[ -n $cpp_opts ]]
2004	then
2005	for popts in $cpp_opts
2006	do
2007	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
2008	then
2009	cpp_options="${cpp_options},-D__$popts=__$popts"
2010	else
2011	cpp_options="$cpp_options -D__$popts"
2012	fi
2013	done
2014	fi
2015
2016	else
2017
2018
2019	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
2020	if [[ $do_remote = false ]]
2021	then
2022	if [[ ! -f $executable ]]
2023	then
2024	printf "\n +++ executable file: $executable"
2025	printf "\n does not exist"
2026	locat=executable; exit
2027	fi
2028	fi
2029	fi
2030
2031
2032	# JOBMODUS FESTSTELLEN
2033	if [[ "$ENVIRONMENT" = BATCH ]]
2034	then
2035	jobmo=BATCH
2036	else
2037	jobmo=INTERACTIVE
2038	fi
2039
2040
2041	# no interactive runs on lctit
2042	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
2043	then
2044	printf "\n +++ no interactive runs allowed on host \"$host\" "
2045	printf "\n please submit batch job using mrun option \"-b\" \n"
2046	locat=normal; exit
2047	fi
2048
2049
2050	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
2051	# DURCH BENUTZER ANDERWEITIG VEREINBART
2052	if [[ "$compiler_name" = "" ]]
2053	then
2054
2055	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
2056	locat=compiler_name; exit
2057
2058	fi
2059
2060
2061	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
2062	[[ $localhost = necriam ]] && compiler_name=mpif90
2063
2064
2065
2066	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
2067	kennung=$RANDOM
2068	if [[ "$tmp_user_catalog" = "" ]]
2069	then
2070	if [[ $localhost = ibmh ]]
2071	then
2072	tmp_user_catalog=$SCRATCH
2073	elif [[ $localhost = nech ]]
2074	then
2075	tmp_user_catalog=$WRKSHR
2076	else
2077	tmp_user_catalog=/tmp
2078	fi
2079	fi
2080	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
2081
2082
2083	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
2084	# BESTIMMEN
2085	if [[ "$tmp_data_catalog" = "" ]]
2086	then
2087	if [[ $localhost = nech ]]
2088	then
2089	tmp_data_catalog=$WRKSHR/mrun_restart_data
2090	else
2091	tmp_data_catalog=/tmp/mrun_restart_data
2092	fi
2093	fi
2094
2095
2096	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
2097	# ERSETZEN
2098	if [[ $do_remote = false && $do_compile = true ]]
2099	then
2100	eval fopts=\"$fopts\"
2101	eval lopts=\"$lopts\"
2102	fi
2103
2104
2105
2106	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
2107	fopts="$fopts $netcdf_inc $dvr_inc"
2108	lopts="$lopts $netcdf_lib $dvr_lib"
2109	ROPTS="$ropts"
2110	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb ) && -n $numprocs ]]
2111	then
2112	XOPT="-X $numprocs"
2113	fi
2114
2115
2116
2117	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
2118	# GRAMM BENOETIGT
2119	done=false
2120	while [[ $done = false ]]
2121	do
2122	cputime=$cpumax
2123	if (( $cputime == 0 ))
2124	then
2125	if [[ $do_batch = true ]]
2126	then
2127	printf "\n +++ cpu-time is undefined"
2128	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
2129	printf "\n >>> "
2130	read cputime 1>/dev/null 2>&1
2131	else
2132	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
2133	fi
2134	else
2135	done=true
2136	fi
2137	cpumax=$cputime
2138	done
2139
2140	(( minuten = cputime / 60 ))
2141	(( sekunden = cputime - minuten * 60 ))
2142
2143
2144	# PRUEFEN DER KERNSPEICHERANFORDERUNG
2145	if [[ $do_batch = true ]]
2146	then
2147	done=false
2148	while [[ $done = false ]]
2149	do
2150	if (( memory == 0 ))
2151	then
2152	printf "\n +++ memory demand is undefined"
2153	printf "\n >>> Please type memory in MByte per process as INTEGER:"
2154	printf "\n >>> "
2155	read memory 1>/dev/null 2>&1
2156	else
2157	done=true
2158	fi
2159	done
2160	fi
2161
2162
2163	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
2164	if [[ $do_remote = true && -z $remote_username ]]
2165	then
2166	while [[ -z $remote_username ]]
2167	do
2168	printf "\n +++ username on remote host \"$host\" is undefined"
2169	printf "\n >>> Please type username:"
2170	printf "\n >>> "
2171	read remote_username
2172	done
2173	mc="$mc -u$remote_username"
2174	fi
2175
2176	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2177	if [[ "$login_init_cmd" != "" ]]
2178	then
2179	export init_cmds="${login_init_cmd};"
2180	fi
2181
2182
2183	# set module load command and export for subjob
2184	if [[ "$modules" != "" ]]
2185	then
2186	if [[ $host = lctit ]]
2187	then
2188	export module_calls=". $modules"
2189	else
2190	export module_calls="module load ${modules};"
2191	fi
2192	fi
2193
2194	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2195	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2196	then
2197	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2198	then
2199	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2200	fi
2201	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2202	# then
2203	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2204	# echo "*** module_calls = $module_calls"
2205	# fi
2206	fi
2207
2208
2209	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2210	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2211	then
2212	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2213	then
2214	mpilib=mpt
2215	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2216	then
2217	mpilib=mvapich
2218	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2219	then
2220	mpilib=impi
2221	fi
2222	fi
2223
2224
2225
2226	###########################################################################
2227	# HEADER-AUSGABE
2228	###########################################################################
2229
2230
2231	calltime=$(date)
2232	printf "\n"
2233	# [[ $silent = false ]] && clear
2234	printf "#--------------------------------------------------------------# \n"
2235	printf "\| $version$calltime \| \n"
2236	printf "\| \| \n"
2237	spalte1="called on:"; spalte2=$localhost_realname
2238	printf "\| $spalte1$spalte2 \| \n"
2239	if [[ $local_compile = false ]]
2240	then
2241	if [[ $do_remote = true ]]
2242	then
2243	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2244	else
2245	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2246	fi
2247	else
2248	spalte1="compiling test only!"; spalte2=""
2249	fi
2250	printf "\| $spalte1$spalte2 \| \n"
2251	if [[ -n $numprocs ]]
2252	then
2253	spalte1="number of PEs:"; spalte2=$numprocs
2254	printf "\| $spalte1$spalte2 \| \n"
2255	fi
2256	if [[ -n $tasks_per_node ]]
2257	then
2258	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2259	printf "\| $spalte1$spalte2 \| \n"
2260	fi
2261	if [[ $maximum_parallel_io_streams != $numprocs ]]
2262	then
2263	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2264	printf "\| $spalte1$spalte2 \| \n"
2265	fi
2266	if [[ $use_openmp = true ]]
2267	then
2268	spalte1="threads per task:"; spalte2="$threads_per_task"
2269	printf "\| $spalte1$spalte2 \| \n"
2270	fi
2271	printf "\| \| \n"
2272	if [[ $do_compile = true ]]
2273	then
2274	if [[ "$mopts" != "" ]]
2275	then
2276	spalte1="make options:"; spalte2=$mopts
2277	printf "\| $spalte1$spalte2 \| \n"
2278	zeile=$(echo "$mopts" \| cut -c41-)
2279	while [[ "$zeile" != "" ]]
2280	do
2281	spalte1=""
2282	spalte2=$zeile
2283	printf "\| $spalte1$spalte2 \| \n"
2284	zeile=$(echo "$zeile" \| cut -c41-)
2285	done
2286	fi
2287
2288	spalte1="cpp directives:"; spalte2=$cpp_options
2289	printf "\| $spalte1$spalte2 \| \n"
2290	zeile=$(echo "$cpp_options" \| cut -c41-)
2291	while [[ "$zeile" != "" ]]
2292	do
2293	spalte1=""
2294	spalte2=$zeile
2295	printf "\| $spalte1$spalte2 \| \n"
2296	zeile=$(echo "$zeile" \| cut -c41-)
2297	done
2298
2299	spalte1="compiler options:"; spalte2="$fopts"
2300	printf "\| $spalte1$spalte2 \| \n"
2301	zeile=$(echo "$fopts" \| cut -c41-)
2302	while [[ "$zeile" != "" ]]
2303	do
2304	spalte1=""
2305	spalte2=$zeile
2306	printf "\| $spalte1$spalte2 \| \n"
2307	zeile=$(echo "$zeile" \| cut -c41-)
2308	done
2309
2310	spalte1="linker options:"; spalte2=$lopts
2311	printf "\| $spalte1$spalte2 \| \n"
2312	zeile=$(echo "$lopts" \| cut -c41-)
2313	while [[ "$zeile" != "" ]]
2314	do
2315	spalte1=""
2316	spalte2=$zeile
2317	printf "\| $spalte1$spalte2 \| \n"
2318	zeile=$(echo "$zeile" \| cut -c41-)
2319	done
2320
2321	spalte1="modules to be load:"; spalte2=$modules
2322	printf "\| $spalte1$spalte2 \| \n"
2323	zeile=$(echo "$modules" \| cut -c41-)
2324	while [[ "$zeile" != "" ]]
2325	do
2326	spalte1=""
2327	spalte2=$zeile
2328	printf "\| $spalte1$spalte2 \| \n"
2329	zeile=$(echo "$zeile" \| cut -c41-)
2330	done
2331
2332	spalte1="main program":; spalte2=$mainprog
2333	printf "\| $spalte1$spalte2 \| \n"
2334	else
2335	spalte1=executable:; spalte2=$executable
2336	printf "\| $spalte1$spalte2 \| \n"
2337	fi
2338	printf "\| \| \n"
2339	spalte1="base name of files":; spalte2=$fname
2340	printf "\| $spalte1$spalte2 \| \n"
2341	if [[ $fname != $afname ]]
2342	then
2343	spalte1="base name of input files":; spalte2=$afname
2344	printf "\| $spalte1$spalte2 \| \n"
2345	fi
2346	spalte1="INPUT control list":; spalte2=$input_list
2347	printf "\| $spalte1$spalte2 \| \n"
2348	spalte1="OUTPUT control list":; spalte2=$output_list
2349	printf "\| $spalte1$spalte2 \| \n"
2350
2351	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2352	then
2353	spalte1="memory demand / PE":; spalte2="$memory MB"
2354	printf "\| $spalte1$spalte2 \| \n"
2355	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2356	printf "\| $spalte1$spalte2 \| \n"
2357	fi
2358
2359	if [[ $do_compile = true ]]
2360	then
2361	printf "\| \| \n"
2362	printf "\| Files to be compiled: \| \n"
2363	zeile=$source_list
2364	while [[ "$zeile" != "" ]]
2365	do
2366	spalte3=$zeile
2367	printf "\| $spalte3 \| \n"
2368	zeile=$(echo "$zeile" \| cut -c61-)
2369	done
2370	fi
2371	printf "#--------------------------------------------------------------#"
2372
2373
2374
2375	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2376	if [[ $do_trace = true ]]
2377	then
2378	(( i = 0 ))
2379	while (( i < iin ))
2380	do
2381	(( i = i + 1 ))
2382	if (( i == 1 ))
2383	then
2384	printf "\n\n >>> INPUT-file assignments:\n"
2385	fi
2386	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2387	done
2388	(( i = 0 ))
2389	while (( i < iout ))
2390	do
2391	(( i = i + 1 ))
2392	if (( i == 1 ))
2393	then
2394	printf "\n\n >>> OUTPUT-file assignments:\n"
2395	fi
2396	printf "\n ${localout[$i]} : ${pathout[$i]}"
2397	done
2398	(( i = 0 ))
2399	while (( i < iic ))
2400	do
2401	(( i = i + 1 ))
2402	if (( i == 1 ))
2403	then
2404	printf "\n\n >>> INPUT-commands:\n"
2405	fi
2406	printf "\n ${in_command[$i]}"
2407	done
2408	(( i = 0 ))
2409	while (( i < ioc ))
2410	do
2411	(( i = i + 1 ))
2412	if (( i == 1 ))
2413	then
2414	printf "\n\n >>> OUTPUT-commands:\n"
2415	fi
2416	printf "\n ${out_command[$i]}"
2417	done
2418	fi
2419
2420
2421	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2422	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2423	then
2424	antwort=dummy
2425	printf "\n\n"
2426	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2427	do
2428	printf " >>> everything o.k. (y/n) ? "
2429	read antwort
2430	done
2431	if [[ $antwort = n \|\| $antwort = N ]]
2432	then
2433	locat=user_abort; (( iec = 0 )); exit
2434	fi
2435	if [[ $do_batch = true ]]
2436	then
2437	printf " >>> batch-job will be created and submitted"
2438	else
2439	if [[ $local_compile = false ]]
2440	then
2441	printf " >>> MRUN will now continue to execute on this machine"
2442	else
2443	printf " >>> a test compilation will now be carried out on this machine"
2444	fi
2445	fi
2446	fi
2447
2448	#### PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2449
2450	#DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2451	check_depository="${working_directory}/trunk/UTIL"
2452	check_sources="${working_directory}/tmp_check_namelist_files"
2453	skip_check=false
2454
2455	#CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2456	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2457	then
2458	skip_check=true
2459	reason="run on remote host or parameter file check has not been compiled."
2460	fi
2461	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2462	then
2463	skip_check=true
2464	reason="parameter file check has not been compiled."
2465	fi
2466
2467	#CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2468	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2469	then
2470	skip_check=true
2471	reason="serial run."
2472	fi
2473
2474	#ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT AND IF THE EXECUTION HOST IS THE LOCAL HOST
2475	if [[ $check_namelist_files == false ]]
2476	then
2477	skip_check=true
2478	reason="-z option set."
2479	fi
2480
2481	if [[ $fromhost != $localhost ]]
2482	then
2483	skip_check=true
2484	reason="submitting host is local host."
2485	fi
2486
2487	if [[ $run_coupled_model == true ]]
2488	then
2489	skip_check=true
2490	reason="coupled run."
2491	fi
2492
2493	if [[ $restart_run == true ]]
2494	then
2495	skip_check=true
2496	reason="restart run."
2497
2498	fi
2499
2500	#SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2501	((last_char = `echo $filename_input \| wc -c` - 1))
2502	last_char=`echo $filename_input \|cut -c$last_char`
2503	if [[ "$last_char" == "f" ]]
2504	then
2505	skip_check=true
2506	reason="restart run.)"
2507	fi
2508
2509	if [[ $skip_check == false ]]
2510	then
2511
2512	tmp_check=${working_directory}/tmp_check
2513
2514	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_P3DF"). THIS FILE MIGHT IS
2515	# NOT NECESSARILY REQUIRED
2516	line=""
2517	found=false
2518	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2519	while read line1
2520	do
2521	line="$line1"
2522	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2523	then
2524	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2525	found=true
2526	fi
2527	done < $tmp_check
2528
2529	if [[ $found = false ]]
2530	then
2531	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2532	fi
2533
2534	rm -rf ${working_directory}/tmp_check
2535
2536	# CHECK IF THE A P3DF FILE MUST BE CHECKED
2537	for item in $input_list
2538	do
2539	if [[ "$item" == "restart" ]]
2540	then
2541	check_restart=1
2542	else
2543	check_restart=0
2544	fi
2545	done
2546
2547	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2548	if [[ (! -f $filename_input) && ( "$filename_input" != "") ]]
2549	then
2550	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2551	locat=check_namelist; exit
2552	fi
2553
2554	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2555	if [[ $check_restart == 1 ]]
2556	then
2557
2558
2559
2560	filenamef="${filename_input}f"
2561	if [[ ! -f $filenamef ]]
2562	then
2563	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2564	check_restart=0
2565	answer=dummy
2566	printf "\n\n"
2567
2568	if [[ $silent == false ]]
2569	then
2570	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2571	do
2572	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2573	read answer
2574	done
2575	if [[ $answer = a \|\| $answer = A ]]
2576	then
2577	printf "\n +++ Aborting...."
2578	locat=normal; exit
2579	fi
2580	fi
2581	else
2582	check_restart=1
2583	fi
2584	fi
2585
2586	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2587	mkdir $check_sources
2588	cd $check_sources
2589
2590
2591	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2592	if [[ -d $add_source_path ]]
2593	then
2594	printf "\n\n *** copying files from $check_depository"
2595	cp $check_depository/check_namelist_files.tar ./
2596
2597	printf "\n\n *** untar of makefile and source files in $check_sources"
2598	tar -xf check_namelist_files.tar > /dev/null 2>&1
2599
2600	printf "\n\n *** adding user code."
2601	cp $add_source_path/* ./
2602	touch check_namelist_files.f90
2603
2604	# GET COMPILER OPTIONS AND PERFORM MAKE
2605	printf "\n\n *** compiling code if necessary...\n"
2606
2607	# workaround for batch jobs on local machine (lcxe6)
2608	if [[ $do_batch == true && $do_remote == false ]]
2609	then
2610	eval $init_cmds
2611	fi
2612
2613	copts_check="-cpp -D__parallel -D__check"
2614	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2615
2616	# GET MAKE OUTPUT
2617	if [[ $? != 0 ]]
2618	then
2619	printf "\n +++ error during make."
2620	answer=dummy
2621	printf "\n\n"
2622	if [[ $silent == false ]]
2623	then
2624	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2625	do
2626	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2627	read answer
2628	done
2629	if [[ $answer = a \|\| $answer = A ]]
2630	then
2631	printf "\n +++ Aborting..."
2632	rm -rf $check_sources
2633	locat=normal; exit
2634	else
2635	skip_check=true
2636	fi
2637	else
2638	skip_check=true
2639	fi
2640	fi
2641	else
2642	cp $PALM_BIN/check_namelist_files.x ./
2643	fi
2644
2645	cp $filename_input ./PARIN
2646	if [[ $check_restart == 1 ]]
2647	then
2648	cp $filenamef ./PARINF
2649	fi
2650
2651	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2652	then
2653	printf "\n *** adding topography data"
2654	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2655
2656	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2657	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2658	# WHICH REQUIRE SUFFICIENT MEMORY
2659	ulimit -s unlimited
2660	fi
2661
2662	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2663	cat > ENVPAR << %%END%%
2664	&envpar run_identifier = '$fname', host = '$host',
2665	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2666	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2667	maximum_cpu_time_allowed = ${cpumax}.,
2668	revision = '$global_revision',
2669	local_dvrserver_running = $local_dvrserver_running /
2670
2671	%%END%%
2672
2673	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2674	if [[ ! -f check_namelist_files.x && $skip_check == false ]] then
2675	printf "\n +++ WARNING: check_namelist_files.x not found."
2676	answer=dummy
2677	printf "\n\n"
2678
2679	if [[ $silent == false ]]
2680	then
2681	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2682	do
2683	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2684	read answer
2685	done
2686	if [[ $answer = a \|\| $answer = A ]]
2687	then
2688	printf "\n +++ Aborting..."
2689	rm -rf $check_sources
2690	locat=normal; exit
2691	else
2692	printf "\n *** Skipping parameter file check."
2693
2694	fi
2695	fi
2696
2697	elif [[ $skip_check == false ]]
2698	then
2699	# STARTING THE PARAMETER FILE CHECK
2700	printf "\n\n *** starting parameter file check..."
2701
2702	# CHECKING THE P3D FILE
2703	printf "\n\n (1) checking $filename_input"
2704	echo "$numprocs 0 0" > VARIN
2705	errors=`./check_namelist_files.x < VARIN 2>&1`
2706
2707	check_error=false
2708	if [[ "$errors" == "" ]]
2709	then
2710	printf " --> o.k."
2711	else
2712	printf " --> failed."
2713	check_error=true
2714	printf "\n\n $errors"
2715	fi
2716
2717	# CHECKING THE PD3F FILE IF NECESSARY
2718	if [[ $check_restart == 1 && $check_error == false ]]
2719	then
2720	printf "\n\n (2) checking $filenamef"
2721
2722	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET IN &INIPAR LIST
2723	found=false
2724	cat PARINF\|while read line
2725	do
2726	line=$(echo $line\|sed 's/ //g')
2727	if [[ $line == "&inipar" ]]
2728	then
2729	start_search=true
2730	fi
2731
2732	if [[ $start_search == true ]]
2733	then
2734	if [[ $line == "initializing_actions='read_restart_data'" ]]
2735	then
2736	found=true
2737	break
2738	fi
2739	fi
2740
2741	if [[ $line == "/" ]]
2742	then
2743	start_search=false
2744	fi
2745
2746	done
2747
2748	if [[ $found = false ]]
2749	then
2750	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2751	printf "\n in &inipar list in $fname$p3df_suffix."
2752	rm -rf $check_sources
2753	locat=check_namelist; exit
2754	fi
2755
2756	# READ max_user_pr FROM FILES
2757	if [[ -f parin_for_check ]]
2758	then
2759	read max_pr_user < parin_for_check
2760	else
2761	max_user_pr=0
2762	fi
2763
2764	echo "$numprocs 1 $max_pr_user" > VARIN
2765	errors=`./check_namelist_files.x < VARIN 2>&1`
2766
2767	if [[ "$errors" == "" ]]
2768	then
2769	printf " --> o.k."
2770	else
2771	printf " --> failed."
2772	check_error=true
2773	printf "\n\n $errors"
2774	fi
2775	fi
2776
2777	# REPORT ERRORS AND CONTINUE/EXIT
2778	if [[ $check_error == true ]]
2779	then
2780	printf "\n +++ errors found in the parameter file!\n"
2781	answer=dummy
2782	printf "\n\n"
2783
2784	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2785	do
2786	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2787	read answer
2788	done
2789
2790	if [[ $answer = a \|\| $answer = A ]]
2791	then
2792	printf "\n +++ Aborting..."
2793	rm -rf $check_sources
2794	locat=normal; exit
2795	fi
2796	else
2797	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2798	fi
2799	rm -rf $check_sources
2800	fi
2801	else
2802	printf "\n\n +++ skipping parameter file check due to following reason: $reason"
2803	fi
2804
2805	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2806	rm -rf $check_sources
2807	cd $working_directory
2808
2809
2810	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2811	# CHENDE AKTIONEN DURCHGEFUEHRT
2812	if [[ $do_batch = false ]]
2813	then
2814
2815
2816	# TEMPORAEREN KATALOG ERZEUGEN
2817	mkdir -p $TEMPDIR
2818	chmod go+rx $TEMPDIR
2819	tmpcreate=true
2820
2821	# set striping on lustre file system
2822	# if [[ $localhost = lcsgih ]]
2823	# then
2824	# lfs setstripe -s 8192k -c 16 $TEMPDIR
2825	# lfs getstripe $TEMPDIR
2826	# fi
2827
2828
2829	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2830	# TEMPORAERES VERZEICHNIS KOPIEREN
2831	if [[ $do_compile = true ]]
2832	then
2833
2834	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2835	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2836	if [[ $localhost = nech ]]
2837	then
2838	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2839	if mkdir -p $TEMPDIR_COMPILE
2840	then
2841	printf "\n *** \"$TEMPDIR_COMPILE\" "
2842	printf "\n is generated as temporary directory for cross compiling\n"
2843	else
2844	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2845	printf "\n needed for cross compilation failed"
2846	locat=compile
2847	exit
2848	fi
2849	else
2850	TEMPDIR_COMPILE=$TEMPDIR
2851	fi
2852
2853
2854	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
2855	line=""
2856	grep "%depository_path" $config_file > tmp_mrun
2857	while read line
2858	do
2859	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2860	then
2861	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2862	then
2863	global_depository_path=`echo $line \| cut -d" " -s -f2`
2864	fi
2865	fi
2866	done < tmp_mrun
2867
2868	line=""
2869	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2870	while read line
2871	do
2872	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2873	then
2874	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2875	then
2876	local_depository_path=`echo $line \| cut -d" " -s -f2`
2877	fi
2878	fi
2879	done < tmp_mrun
2880
2881	if [[ "$local_depository_path" = "" ]]
2882	then
2883	if [[ "$global_depository_path" != "" ]]
2884	then
2885	local_depository_path=$global_depository_path
2886	else
2887	printf "\n\n +++ no depository path found in configuration file"
2888	printf "\n for local host \"$localhost\" "
2889	printf "\n please set \"\%depository_path\" in configuration file\n"
2890	locat=config_file; exit
2891	fi
2892	fi
2893	eval local_depository_path=$local_depository_path
2894	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2895	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2896
2897
2898	basename=`print $mainprog \| cut -f1 -d"."`
2899	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2900	if [[ ! -f $make_depository ]]
2901	then
2902	printf "\n"
2903	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2904	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2905	else
2906	cp $make_depository $TEMPDIR_COMPILE
2907	cd $TEMPDIR_COMPILE
2908	tar -xf $make_depository > /dev/null 2>&1
2909	cd - > /dev/null
2910	fi
2911
2912	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2913
2914	else
2915
2916	cp $executable ${TEMPDIR}/a.out
2917
2918	fi
2919
2920
2921	# WECHSEL IN TEMPORAEREN KATALOG
2922	cd $TEMPDIR
2923	printf "\n *** changed to temporary directory: $TEMPDIR"
2924
2925
2926	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2927	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2928	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2929	# ERMITTELN
2930	(( i = 0 ))
2931	while (( i < iout ))
2932	do
2933	(( i = i + 1 ))
2934	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2935	then
2936	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2937	else
2938	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2939	fi
2940	done
2941
2942
2943	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
2944	if [[ $do_compile = true ]]
2945	then
2946
2947
2948	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2949	printf "\n\n\n *** compilation starts \n$striche\n"
2950	printf " *** compilation with make using following options:\n"
2951	printf " make depository: $make_depository"
2952	if [[ "$mopts" != "" ]]
2953	then
2954	printf " make options: $mopts\n"
2955	fi
2956	printf " compilername: $compiler_name\n"
2957	printf " compiler options: $fopts\n"
2958	printf " preprocessor directives: $cpp_options \n"
2959	printf " linker options: $lopts \n"
2960	if [[ "$modules" != "" ]]
2961	then
2962	printf " modules to be load: $modules \n"
2963	fi
2964	printf " source code files: $source_list \n"
2965
2966	if [[ $localhost = nech ]]
2967	then
2968	# init_cmds was ". /SX/opt/etc/initsx.sh;"
2969	ssh 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2970	cp $TEMPDIR_COMPILE/a.out .
2971	[[ $? != 0 ]] && compile_error=true
2972	rm -rf $TEMPDIR_COMPILE
2973	elif [[ $localhost = ibmh ]]
2974	then
2975	printf " compiler is called via ssh on \"plogin1\" \n"
2976	ssh plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2977	[[ ! -f a.out ]] && compile_error=true
2978	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2979	elif [[ $localhost = lcsgib ]]
2980	then
2981	printf " compiler is called via ssh on \"bicegate0\" \n"
2982	ssh bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2983	[[ ! -f a.out ]] && compile_error=true
2984	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2985	elif [[ $localhost = lcsgih ]]
2986	then
2987	printf " compiler is called via ssh on \"hicegate0\" \n"
2988	ssh hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2989	[[ ! -f a.out ]] && compile_error=true
2990	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2991	elif [[ $localhost = lcflow ]]
2992	then
2993	printf " compiler is called via ssh on \"flow\" \n"
2994	ssh flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2995	[[ ! -f a.out ]] && compile_error=true
2996	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2997	else
2998	[[ "$init_cmds" != "" ]] && eval $init_cmds
2999	[[ "$module_calls" != "" ]] && eval $module_calls
3000	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
3001
3002	fi
3003
3004	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
3005	then
3006	printf "\n +++ error occured while compiling or linking"
3007	locat=compile
3008
3009	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
3010	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
3011	# then
3012	exit
3013	# else
3014	# locat=normal
3015	# fi
3016	else
3017	printf "$striche\n *** compilation finished \n"
3018	fi
3019	fi
3020
3021
3022	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
3023	if [[ $local_compile = true ]]
3024	then
3025	cd $HOME
3026	rm -rf $TEMPDIR
3027	locat=local_compile; exit
3028	fi
3029
3030
3031	# BEREITSTELLEN DER INPUT-DATEIEN
3032	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
3033	(( i = 0 ))
3034	while (( i < iin ))
3035	do
3036	(( i = i + 1 ))
3037	if (( i == 1 ))
3038	then
3039	printf "\n\n *** providing INPUT-files:\n$striche"
3040	fi
3041
3042
3043	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
3044	if [[ "${transin[$i]}" = unavailable ]]
3045	then
3046	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
3047	then
3048	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
3049	printf "\n is not available!"
3050	else
3051	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
3052	printf "\n is not available!"
3053	fi
3054	continue
3055	fi
3056
3057	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
3058	files_for_pes=false; datentyp=file
3059	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
3060	then
3061	files_for_pes=true; datentyp=directory
3062	actionin[$i]=""
3063	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
3064	then
3065	actionin[$i]=""
3066	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
3067	then
3068	files_for_pes=true; datentyp=directory
3069	actionin[$i]="ar"
3070	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
3071	then
3072	actionin[$i]="ar"
3073	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
3074	then
3075	files_for_pes=true; datentyp=directory
3076	actionin[$i]="fl"
3077	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3078	then
3079	actionin[$i]="fl"
3080	fi
3081
3082	if [[ $files_for_pes = true ]]
3083	then
3084	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3085	else
3086	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3087	fi
3088
3089	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3090	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3091	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3092	# SERVER ZU HOLEN
3093	if [[ "${actionin[$i]}" = fl ]]
3094	then
3095	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3096	if [[ $files_for_pes = false ]]
3097	then
3098	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3099	then
3100	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3101	got_tmp[$i]=true
3102	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3103	then
3104	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3105	printf "\n *** trying to use backup copy in \"$WORK\" "
3106	cp $WORK/${frelin[$i]} ${localin[$i]}
3107	else
3108	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3109	printf "\n or \"$tmp_data_catalog\" does not exist!"
3110	printf "\n *** trying to get copy from archive"
3111	actionin[$i]=ar
3112	fi
3113	else
3114	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3115	then
3116	mkdir ${localin[$i]}
3117	cd $tmp_data_catalog/${frelin[$i]}
3118	for file in $(ls *)
3119	do
3120	ln $file $TEMPDIR/${localin[$i]}
3121	done
3122	cd $TEMPDIR
3123	got_tmp[$i]=true
3124	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3125	then
3126	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3127	printf "\n *** trying to use backup copy in \"$WORK\" "
3128	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3129	else
3130	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3131	printf "\n or \"$tmp_data_catalog\" does not exist!"
3132	printf "\n *** trying to get copy from archive"
3133	actionin[$i]=ar
3134	fi
3135	fi
3136	fi
3137
3138
3139	# DATEI LIEGT AUF ARCHIV-SERVER
3140	if [[ "${actionin[$i]}" = ar ]]
3141	then
3142
3143	if [[ $files_for_pes = false ]]
3144	then
3145	printf "\n file will be restored from archive-system ($archive_system)!"
3146	else
3147	printf "\n directory will be restored from archive-system ($archive_system)!"
3148	fi
3149
3150	file_restored=false
3151
3152	if [[ $archive_system = asterix ]]
3153	then
3154	do_stagein=true
3155	(( stagein_anz = 0 ))
3156	while [[ $do_stagein = true ]]
3157	do
3158	if [[ $files_for_pes = false ]]
3159	then
3160	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3161	else
3162	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3163	fi
3164	cat STAGEIN_OUTPUT
3165	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3166	then
3167	file_restored=true
3168	do_stagein=false
3169	else
3170	(( stagein_anz = stagein_anz + 1 ))
3171	if (( stagein_anz == 10 ))
3172	then
3173	printf "\n +++ stagein stoped after 10 tries"
3174	locat=stage
3175	exit
3176	fi
3177	printf "\n +++ restoring from archive failed, trying again:"
3178	sleep 900
3179	fi
3180	done
3181	elif [[ $archive_system = DMF ]]
3182	then
3183	if [[ $files_for_pes = false ]]
3184	then
3185	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3186	locat=DMF
3187	exit
3188	else
3189	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3190	cp -r $ARCHIVE/${frelin[$i]} $PWD
3191	file_restored=true
3192	fi
3193	elif [[ $archive_system = tivoli ]]
3194	then
3195	if [[ $files_for_pes = false ]]
3196	then
3197	if [[ $localhost = lcsgih ]]
3198	then
3199	ssh $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3200	else
3201	ssh $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3202	fi
3203	else
3204	(( inode = 0 ))
3205	while (( inode < nodes ))
3206	do
3207	if [[ $localhost = lcsgih ]]
3208	then
3209	ssh $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3210	else
3211	ssh $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3212	fi
3213	(( inode = inode + 1 ))
3214	done
3215	fi
3216	file_restored=true
3217	elif [[ $archive_system = ut ]]
3218	then
3219	if [[ $files_for_pes = false ]]
3220	then
3221	cp $UT/${frelin[$i]} .
3222	else
3223	(( inode = 0 ))
3224	while (( inode < nodes ))
3225	do
3226	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3227	(( inode = inode + 1 ))
3228	done
3229	fi
3230	file_restored=true
3231	else
3232	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3233	locat=rearchive
3234	exit
3235	fi
3236
3237	if [[ $file_restored = true ]]
3238	then
3239
3240	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3241	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3242	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3243	if [[ $files_for_pes = false ]]
3244	then
3245	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3246	else
3247	mkdir $tmp_data_catalog/${frelin[$i]}
3248	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3249	fi
3250	got_tmp[$i]=true
3251
3252	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3253	mv ${frelin[$i]} ${localin[$i]}
3254
3255	fi
3256	fi
3257
3258
3259	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3260	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3261	then
3262
3263	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3264	then
3265
3266	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3267	printf "\n file will be provided for $numprocs processors"
3268	mkdir ${localin[$i]}
3269	ival=$numprocs
3270	(( ii = 0 ))
3271	while (( ii <= ival-1 ))
3272	do
3273	if (( ii < 10 ))
3274	then
3275	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3276	elif (( ii < 100 ))
3277	then
3278	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3279	elif (( ii < 1000 ))
3280	then
3281	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3282	else
3283	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3284	fi
3285	(( ii = ii + 1 ))
3286	done
3287
3288	else
3289
3290	if [[ $files_for_pes = true ]]
3291	then
3292
3293	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3294	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3295	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3296	# PER MOVE UMBENANNT WERDEN
3297	printf "\n providing $numprocs files for the respective processors"
3298	mkdir ${localin[$i]}
3299	if [[ $link_local_input = true ]]
3300	then
3301	printf " using ln -f\n"
3302	cd ${absnamein[$i]}
3303	for file in $(ls *)
3304	do
3305	ln -f $file ${localin[$i]}
3306	done
3307	cd $TEMPDIR
3308	fi
3309	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3310	if [[ ! -f "${localin[$i]}/_0000" ]]
3311	then
3312	if [[ $link_local_input = true ]]
3313	then
3314	printf " ln failed for .../_0000, using cp...\n"
3315	fi
3316	cp -r ${absnamein[$i]}/* ${localin[$i]}
3317	fi
3318
3319	else
3320	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3321	if [[ $link_local_input = true ]]
3322	then
3323	printf " using ln -f\n"
3324	ln -f ${absnamein[$i]} ${localin[$i]}
3325	fi
3326	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3327	if [[ ! -f "${localin[$i]}" ]]
3328	then
3329	if [[ $link_local_input = true ]]
3330	then
3331	printf " ln failed, using cp...\n"
3332	fi
3333	cp ${absnamein[$i]} ${localin[$i]}
3334	fi
3335	fi
3336	fi
3337	fi
3338
3339	done
3340	if (( i != 0 ))
3341	then
3342	printf "\n$striche\n *** all INPUT-files provided \n"
3343	fi
3344
3345
3346	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3347	(( i = 0 ))
3348	while (( i < iic ))
3349	do
3350	(( i = i + 1 ))
3351	if (( i == 1 ))
3352	then
3353	printf "\n\n *** execution of INPUT-commands:\n$striche"
3354	fi
3355	printf "\n >>> ${in_command[$i]}"
3356	eval ${in_command[$i]}
3357	if (( i == iic ))
3358	then
3359	printf "\n$striche\n"
3360	fi
3361	done
3362
3363
3364	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3365	cpurest=${cpumax}.
3366
3367
3368	# START DVR STREAMING SERVER
3369	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3370	then
3371	if [[ "$dvr_server" != "" ]]
3372	then
3373
3374	printf "\n\n *** preparing the dvr streaming server configuration file"
3375
3376	# Check, if a dvr server is already running
3377	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3378	if [[ "$running_dvrserver_id" != "" ]]
3379	then
3380
3381	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3382	printf "\n This server is used instead starting a new one!"
3383	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3384
3385	else
3386
3387	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3388	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3389	then
3390	cp ${PALM_BIN}/.dvrserver.config .
3391
3392	# Entering the BASEDIR, UID and GID into this file
3393	user_id=`id -u`
3394	group_id=`id -g`
3395	# & is needed as seperator, because TEMPDIR contains /
3396	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3397	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3398	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3399	mv .dvrserver.3 .dvrserver.config
3400	rm .dvrserver.1 .dvrserver.2
3401
3402	# Start dvr server in background, get his id and print on terminal
3403	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3404	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3405	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3406	local_dvrserver_running=.TRUE.
3407	else
3408	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3409	printf "\n \"$PALM_BIN\" "
3410	locat=dvr
3411	exit
3412	fi
3413
3414	fi
3415
3416	else
3417	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3418	fi
3419	fi
3420
3421
3422	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3423	# LESEN VON PALM)
3424	cat > ENVPAR << %%END%%
3425	&envpar run_identifier = '$fname', host = '$localhost',
3426	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3427	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3428	maximum_cpu_time_allowed = ${cpumax}.,
3429	revision = '$global_revision',
3430	local_dvrserver_running = $local_dvrserver_running /
3431
3432	%%END%%
3433
3434
3435	# PROGRAMMSTART
3436	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3437	PATH=$PATH:$TEMPDIR
3438
3439	# MPI debug option (argument checking, slows down execution due to increased latency)
3440	if [[ "$mpi_debug" = true ]]
3441	then
3442	export MPI_CHECK_ARGS=1
3443	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3444	fi
3445
3446	if [[ "$totalview" = true ]]
3447	then
3448	printf "\n *** totalview debugger will be used"
3449	tv_opt="-tv"
3450	else
3451	tv_opt=""
3452	fi
3453
3454	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3455	then
3456	if [[ "$ENVIRONMENT" = BATCH ]]
3457	then
3458	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3459	then
3460	printf "\n +++ debug is allowed in interactive mode only"
3461	locat=debug
3462	exit
3463	fi
3464	fi
3465	if [[ $localhost = decalpha ]]
3466	then
3467	dxladebug a.out
3468	elif [[ $localhost = ibmh ]]
3469	then
3470
3471	# SETUP THE IBM MPI ENVIRONMENT
3472	export MP_SHARED_MEMORY=yes
3473	export AIXTHREADS_SCOPE=S
3474	export OMP_NUM_THREADS=$threads_per_task
3475	export AUTHSTATE=files
3476	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3477
3478	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3479	export MP_ADAPTER_USE=shared
3480	export MP_CPU_USE=multiple
3481	export MP_TIMEOUT=1200
3482
3483	unset MP_TASK_AFFINITY
3484
3485	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3486	#(( ii = 1 ))
3487	#while (( ii <= $numprocs ))
3488	#do
3489	# echo $localhost_realname >> hostfile
3490	# (( ii = ii + 1 ))
3491	#done
3492	#export MP_HOSTFILE=hostfile
3493
3494	if [[ "$LOADLBATCH" = yes ]]
3495	then
3496	totalview poe a.out $ROPTS
3497	else
3498	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3499	export TVDSVRLAUNCHCMD=ssh
3500	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3501	fi
3502	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3503	then
3504	# CURRENTLY NO DEBUGGER ON LCSGI
3505	if [[ $run_coupled_model = true ]]
3506	then
3507	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3508	locat=debug
3509	exit
3510	else
3511	echo "no_coupling" > runfile_atmos
3512	fi
3513	(( ii = $numprocs / $threads_per_task ))
3514	export OMP_NUM_THREADS=$threads_per_task
3515	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3516	if [[ $threads_per_task != 1 ]]
3517	then
3518	printf "\n threads per task: $threads_per_task"
3519	fi
3520	printf "\n\n"
3521	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3522	then
3523	# export MPI_LAUNCH_TIMEOUT=360
3524	if [[ "$totalview" = true ]]
3525	then
3526	printf "\n running totalview debugger"
3527	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3528	else
3529	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3530	fi
3531	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3532	then
3533	# ulimit -s 300000 # A too large stack size causes problems
3534	# export MV2_NUM_PORTS=2
3535	# export MV2_CPU_MAPPING=0:1:2:3
3536	if [[ "$totalview" = true ]]
3537	then
3538	printf "\n running totalview debugger"
3539	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3540	else
3541	mpiexec ./a.out $ROPTS < runfile_atmos
3542	fi
3543	fi
3544	else
3545	printf "\n +++ no debug available on \"$localhost\" "
3546	printf "\n or not implemented in mrun so far"
3547	locat=debug
3548	exit
3549	fi
3550
3551	# end debug mode
3552	else
3553
3554	# normal execution
3555	if [[ -n $numprocs ]]
3556	then
3557	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3558	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3559	then
3560	# SETUP THE IBM MPI ENVIRONMENT
3561	if [[ $host != ibmh && $host != ibmkisti ]]
3562	then
3563	export MP_SHARED_MEMORY=yes
3564	export AIXTHREAD_SCOPE=S
3565	export OMP_NUM_THREADS=$threads_per_task
3566	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3567	export AUTHSTATE=files
3568	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3569	# export MP_PRINTENV=yes
3570
3571	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3572	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3573	export MP_WAIT_MODE=poll
3574	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3575	fi
3576
3577	if [[ $host = ibmkisti ]]
3578	then
3579	export LANG=en_US
3580	export MP_SHARED_MEMORY=yes
3581	if [[ $threads_per_task = 1 ]]
3582	then
3583	export MP_SINGLE_THREAD=yes
3584	export MEMORY_AFFINITY=MCM
3585	else
3586	export OMP_NUM_THREADS=$threads_per_task
3587	fi
3588	fi
3589
3590	if [[ "$LOADLBATCH" = yes ]]
3591	then
3592	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3593	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3594	then
3595	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3596	else
3597	if [[ $run_coupled_model = false ]]
3598	then
3599	if [[ "$ocean_file_appendix" = true ]]
3600	then
3601	echo "precursor_ocean" > runfile_atmos
3602	else
3603	echo "precursor_atmos" > runfile_atmos
3604	fi
3605	else
3606	(( iia = $numprocs_atmos / $threads_per_task ))
3607	(( iio = $numprocs_ocean / $threads_per_task ))
3608	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3609	printf "\n using $coupled_mode coupling"
3610	printf "\n\n"
3611	echo "coupled_run $iia $iio" > runfile_atmos
3612	fi
3613	poe ./a.out $ROPTS < runfile_atmos
3614	fi
3615	else
3616	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3617	then
3618	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3619	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3620	then
3621	if [[ -f $hostfile ]]
3622	then
3623	cp $hostfile hostfile
3624	else
3625	(( ii = 1 ))
3626	while (( ii <= $numprocs ))
3627	do
3628	echo $localhost_realname >> hostfile
3629	(( ii = ii + 1 ))
3630	done
3631	fi
3632	export MP_HOSTFILE=hostfile
3633	if [[ $run_coupled_model = false ]]
3634	then
3635	if [[ "$ocean_file_appendix" = true ]]
3636	then
3637	echo "precursor_ocean" > runfile_atmos
3638	else
3639	echo "precursor_atmos" > runfile_atmos
3640	fi
3641	else
3642	(( iia = $numprocs_atmos / $threads_per_task ))
3643	(( iio = $numprocs_ocean / $threads_per_task ))
3644	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3645	printf "\n using $coupled_mode coupling"
3646	printf "\n\n"
3647	echo "coupled_run $iia $iio" > runfile_atmos
3648	fi
3649	if [[ $localhost = ibmy ]]
3650	then
3651	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3652	else
3653	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3654	fi
3655
3656	else
3657	if [[ "$host_file" = "" ]]
3658	then
3659	printf "\n +++ no hostfile given in configuration file"
3660	locat=config_file
3661	exit
3662	else
3663	eval host_file=$host_file
3664	fi
3665	export MP_HOSTFILE=$host_file
3666	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3667	fi
3668	fi
3669	elif [[ $host = nech \|\| $host = necriam ]]
3670	then
3671	(( ii = nodes ))
3672	if [[ $ii = 1 ]]
3673	then
3674	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3675	export MPIPROGINF=YES
3676	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3677	echo "*** execution on single node with mpirun"
3678	mpirun -np $numprocs ./a.out $ROPTS
3679	else
3680	(( i = 0 ))
3681	while (( i < ii ))
3682	do
3683	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3684	(( i = i + 1 ))
3685	done
3686
3687	echo "#!/bin/sh" > mpi_exec_shell
3688	echo " " >> mpi_exec_shell
3689	echo "set -u" >> mpi_exec_shell
3690	echo "F_ERRCNT=0" >> mpi_exec_shell
3691	echo "MPIPROGINV=YES" >> mpi_exec_shell
3692	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3693	echo "cpurest=$cpurest" >> mpi_exec_shell
3694	echo "fname=$fname" >> mpi_exec_shell
3695	echo "localhost=$localhost" >> mpi_exec_shell
3696	echo "return_addres=$return_addres" >> mpi_exec_shell
3697	echo "return_username=$return_username" >> mpi_exec_shell
3698	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3699	echo "write_binary=$write_binary" >> mpi_exec_shell
3700	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3701	echo " " >> mpi_exec_shell
3702	echo "export F_ERRCNT" >> mpi_exec_shell
3703	echo "export MPIPROGINV" >> mpi_exec_shell
3704	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3705	echo "export cpurest" >> mpi_exec_shell
3706	echo "export fname" >> mpi_exec_shell
3707	echo "export localhost" >> mpi_exec_shell
3708	echo "export return_addres" >> mpi_exec_shell
3709	echo "export return_username" >> mpi_exec_shell
3710	echo "export tasks_per_node" >> mpi_exec_shell
3711	echo "export write_binary" >> mpi_exec_shell
3712	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3713	echo " " >> mpi_exec_shell
3714	echo "exec ./a.out" >> mpi_exec_shell
3715
3716	chmod u+x mpi_exec_shell
3717	export MPIPROGINF=YES
3718	mpirun -f multinode_config &
3719	wait
3720
3721	fi
3722	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3723	then
3724
3725	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3726	# DOES NOT EXIST
3727	if [[ $host != lcsgih && $host != lcsgib ]]
3728	then
3729	if [[ -f $hostfile ]]
3730	then
3731	cp $hostfile hostfile
3732	(( ii = $numprocs / $threads_per_task ))
3733	else
3734	(( ii = 1 ))
3735	while (( ii <= $numprocs / $threads_per_task ))
3736	do
3737	echo $localhost_realname >> hostfile
3738	(( ii = ii + 1 ))
3739	done
3740	fi
3741	eval zeile=\"`head -n $ii hostfile`\"
3742	printf "\n *** running on: $zeile"
3743	fi
3744
3745	(( ii = $numprocs / $threads_per_task ))
3746	export OMP_NUM_THREADS=$threads_per_task
3747	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3748	if [[ $threads_per_task != 1 ]]
3749	then
3750	# increase stack size to unlimited, because large runs
3751	# may abort otherwise
3752	ulimit -Ss unlimited
3753	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3754	fi
3755	if [[ $run_coupled_model = false ]]
3756	then
3757	if [[ "$ocean_file_appendix" = true ]]
3758	then
3759	echo "precursor_ocean" > runfile_atmos
3760	else
3761	echo "precursor_atmos" > runfile_atmos
3762	fi
3763	printf "\n\n"
3764	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3765	then
3766	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3767	then
3768	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3769	# export MPI_DSM_DISTRIBUTE=1
3770	# MPI_DSM_CPULIST: pin MPI processes to cores
3771	if [[ $use_openmp = false ]]
3772	then
3773	if [[ "$sgi_feature" = ice2 ]]
3774	then
3775	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3776	else
3777	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3778	fi
3779	else
3780	unset MPI_DSM_CPULIST
3781	fi
3782	# MPI_IB_RAILS: use both IB rails on ICE2
3783	export MPI_BUFS_PER_HOST=512
3784	export MPI_IB_RAILS=2
3785	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3786	export MPI_CONNECTIONS_THRESHOLD=8192
3787	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3788	export MPI_TYPE_DEPTH=20
3789	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3790	export MPI_GROUP_MAX=64
3791	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3792	if [[ $use_openmp = true ]]
3793	then
3794	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3795	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3796	else
3797	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3798	fi
3799
3800	# next is test for openmp usage
3801	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3802	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3803	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3804	then
3805	export MV2_NUM_PORTS=2
3806	# The default setting of MV2_CPU_MAPPING gives best results
3807	# export MV2_ENABLE_AFFINITY=1
3808	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3809	# if [[ "$sgi_feature" = ice2 ]]
3810	# then
3811	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3812	# else
3813	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3814	# fi
3815	if [[ $use_openmp = true ]]
3816	then
3817	unset MV2_CPU_MAPPING
3818	export MV2_ENABLE_AFFINITY=0
3819	fi
3820	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3821	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3822	if [[ $use_openmp = true ]]
3823	then
3824	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3825	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3826	else
3827	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3828	fi
3829	elif [[ "$mpilib" = impi ]]
3830	then
3831	echo "mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3832	mpirun -np $tasks_per_node inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3833	fi
3834	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3835	then
3836	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3837	elif [[ $host = lcflow ]]
3838	then
3839	mpiexec -machinefile $TMPDIR/machines -n $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3840	elif [[ $host = lcsb ]]
3841	then
3842	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3843	elif [[ $host = lckiaps ]]
3844	then
3845	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3846	else
3847	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3848	fi
3849	else
3850
3851	# currently there is no full MPI-2 support on ICE and XT4
3852	(( iia = $numprocs_atmos / $threads_per_task ))
3853	(( iio = $numprocs_ocean / $threads_per_task ))
3854	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3855	printf "\n using $coupled_mode coupling"
3856	printf "\n\n"
3857
3858	if [[ $coupled_mode = "mpi2" ]]
3859	then
3860	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3861	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3862	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3863	then
3864
3865	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3866	then
3867	# export MPI_LAUNCH_TIMEOUT=360
3868	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3869	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3870	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3871	then
3872	# ulimit -s 300000 # A too large stack size causes problems
3873	# export MV2_NUM_PORTS=2
3874	# export MV2_CPU_MAPPING=0:1:2:3
3875	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3876	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3877	fi
3878
3879	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3880	then
3881
3882	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3883	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3884
3885	else
3886	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3887	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3888	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3889	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3890	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3891	fi
3892	wait
3893
3894	else
3895
3896	echo "coupled_run $iia $iio" > runfile_atmos
3897	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3898	then
3899
3900	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3901	then
3902	# export MPI_LAUNCH_TIMEOUT=360
3903	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3904	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3905	then
3906	# ulimit -s 300000 # A too large stack size causes problems
3907	# export MV2_NUM_PORTS=2
3908	# export MV2_CPU_MAPPING=0:1:2:3
3909	mpiexec ./a.out $ROPTS < runfile_atmos
3910	fi
3911
3912	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3913	then
3914
3915	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3916
3917	elif [[ $host = lck \|\| $host = lckordi ]]
3918	then
3919	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3920	fi
3921	wait
3922	fi
3923
3924	fi
3925	elif [[ $host = decalpha ]]
3926	then
3927	dmpirun -np $numprocs a.out $ROPTS
3928	elif [[ $host = lckyoto ]]
3929	then
3930	set -xv
3931	export P4_RSHCOMMAND=plesh
3932	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3933	if [[ "$ENVIRONMENT" = BATCH ]]
3934	then
3935	if [[ "$cond2" = fujitsu ]]
3936	then
3937	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3938	elif [[ "cond2" = pgi ]]
3939	then
3940	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3941	else
3942	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3943	fi
3944	else
3945	if [[ "$cond2" = "" ]]
3946	then
3947	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3948	else
3949	mpirun -np $numprocs ./a.out $ROPTS
3950	fi
3951	fi
3952	set +xv
3953	elif [[ $host = lctit ]]
3954	then
3955	export OMP_NUM_THREADS=$threads_per_task
3956	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3957	if [[ "$threads_per_task" != 1 ]]
3958	then
3959	export MV2_ENABLE_AFFINITY=0
3960	fi
3961	echo "----- PBS_NODEFILE content:"
3962	cat $PBS_NODEFILE
3963	echo "-----"
3964	(( ii = $numprocs / $threads_per_task ))
3965	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3966	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3967	else
3968	mpprun -n $numprocs a.out $ROPTS
3969	fi
3970	[[ $? != 0 ]] && execution_error=true
3971
3972
3973	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3974	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3975	then
3976	apprentice
3977	fi
3978	else
3979	a.out $ROPTS
3980	fi
3981	fi
3982	if [[ $? != 0 \|\| $execution_error = true ]]
3983	then
3984
3985	# ABBRUCH BEI LAUFZEITFEHLER
3986	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3987	printf "\n +++ runtime error occured"
3988	locat=execution
3989	exit
3990	else
3991	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3992	printf "\n$striche\n *** execution finished \n"
3993
3994	# Stop the dvr streaming server and process the dvr output in order
3995	# to create dvrs- and html-files containing all streams
3996	if [[ "$dvrserver_id" != "" ]]
3997	then
3998	kill $dvrserver_id
3999	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
4000
4001	# If there is a directory, data have been output by the
4002	# streaming server. Otherwise, user has chosen dvrp_output=local
4003	if [[ -d DATA_DVR ]]
4004	then
4005
4006	# Add the current dvr configuration file to the dvr output
4007	# directory
4008	cp .dvrserver.config DATA_DVR
4009
4010	# Process the dvr output (option -s for also generating
4011	# sequence mode data)
4012	process_dvr_output -d DATA_DVR -f $fname -s
4013
4014	else
4015
4016	# Process the local output
4017	process_dvr_output -l -d DATA_DVR -f $fname
4018
4019	fi
4020
4021	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
4022	then
4023
4024	# Process dvr output generated in local mode (dvrp_output=local)
4025	process_dvr_output -l -d DATA_DVR -f $fname
4026
4027	fi
4028	fi
4029
4030
4031
4032	# Call of combine_plot_fields in order to merge single files written
4033	# by each PE into one file.
4034	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
4035	then
4036	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
4037	printf "\n 2d- and/or 3d-data may be incomplete!"
4038	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
4039	elif [[ "$combine_plot_fields" == true ]]
4040	then
4041	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
4042	combine_plot_fields${block}.x
4043	else
4044	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
4045	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
4046	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
4047	fi
4048
4049
4050
4051	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
4052	(( i = 0 ))
4053	while (( i < ioc ))
4054	do
4055	(( i = i + 1 ))
4056	if (( i == 1 ))
4057	then
4058	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
4059	fi
4060	printf "\n >>> ${out_command[$i]}"
4061	eval ${out_command[$i]}
4062	if (( i == ioc ))
4063	then
4064	printf "\n$striche\n"
4065	fi
4066	done
4067
4068
4069	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4070	if [[ $do_trace = true ]]
4071	then
4072	printf "\n\n"
4073	ls -al
4074	fi
4075
4076
4077
4078	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4079	(( i = 0 ))
4080	while (( i < iout ))
4081	do
4082	(( i = i + 1 ))
4083	if (( i == 1 ))
4084	then
4085	printf "\n\n *** saving OUTPUT-files:\n$striche"
4086	fi
4087
4088	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4089	files_for_pes=false; filetyp=file
4090	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4091	then
4092	files_for_pes=true; filetyp=directory
4093	actionout[$i]=""
4094	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4095	then
4096	actionout[$i]=""
4097	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4098	then
4099	files_for_pes=true; filetyp=directory
4100	actionout[$i]="ar"
4101	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4102	then
4103	actionout[$i]="ar"
4104	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4105	then
4106	files_for_pes=true; filetyp=directory
4107	actionout[$i]="fl"
4108	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4109	then
4110	actionout[$i]="fl"
4111	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4112	then
4113	files_for_pes=true; filetyp=directory
4114	actionout[$i]="tr"
4115	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4116	then
4117	actionout[$i]="tr"
4118	fi
4119
4120	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4121	then
4122	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4123	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4124	then
4125	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4126	else
4127
4128
4129	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4130	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4131	# REMOTE-RECHNUNGEN
4132	if [[ "${actionout[$i]}" = tr ]]
4133	then
4134	if [[ $localhost != $fromhost ]]
4135	then
4136	if [[ $files_for_pes = false ]]
4137	then
4138	cps=""
4139	cst=""
4140	else
4141	cps=-c
4142	cst="/"
4143	fi
4144	if [[ $localhost = nech ]]
4145	then
4146
4147	# TRANSFER IN EIGENSTAENDIGEM JOB
4148	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4149	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4150	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4151	if [[ $files_for_pes = false ]]
4152	then
4153	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4154	else
4155	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4156	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4157	fi
4158
4159	echo "set -x" > transfer_${localout[$i]}
4160	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4161
4162	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4163	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4164	printf "\n or higher cycle\n"
4165	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4166
4167	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4168
4169	if [[ $localhost = nech ]]
4170	then
4171	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4172	else
4173	if [[ "$LOGNAME" = b323013 ]]
4174	then
4175	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4176	else
4177	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4178	fi
4179	fi
4180
4181	else
4182
4183	# TRANSFER INNERHALB DIESES JOBS
4184	transfer_failed=false
4185	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4186	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4187	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4188	[[ $? != 0 ]] && transfer_failed=true
4189
4190	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4191	# LOKALER MASCHINE ANLEGEN
4192	if [[ $transfer_failed = true ]]
4193	then
4194	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4195	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4196
4197	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4198	# ANLEGEN.
4199	eval local_catalog=${pathout[$i]}
4200	if [[ ! -d $local_catalog ]]
4201	then
4202	printf " *** local directory does not exist. Trying to create:\n"
4203	printf " $local_catalog \n"
4204	mkdir -p $local_catalog
4205	fi
4206	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4207	transfer_problems=true
4208	fi
4209	fi
4210	else
4211
4212	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4213	actionout[$i]=""
4214	fi
4215	fi
4216
4217
4218	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4219	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4220	# REMOTE-RECHNUNGEN
4221	if [[ "${actionout[$i]}" = tra ]]
4222	then
4223	if [[ $localhost != $fromhost ]]
4224	then
4225	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4226	then
4227
4228	# TRANSFER IN EIGENSTAENDIGEM JOB
4229	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4230	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4231	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4232	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4233
4234	echo "set -x" > transfer_${localout[$i]}
4235	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4236
4237	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4238	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4239	printf "\n or higher cycle\n"
4240	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4241
4242	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4243
4244	if [[ $localhost = nech ]]
4245	then
4246	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
4247	else
4248	if [[ $LOGNAME = b323013 ]]
4249	then
4250	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4251	else
4252	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
4253	fi
4254	fi
4255
4256	else
4257
4258	# TRANSFER INNERHALB DIESES JOBS
4259	transfer_failed=false
4260	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4261	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4262	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4263	[[ $? != 0 ]] && transfer_failed=true
4264
4265	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4266	# LOKALER MASCHINE ANLEGEN
4267	if [[ $transfer_failed = true ]]
4268	then
4269	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4270	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4271
4272	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4273	# ANLEGEN
4274	eval local_catalog=${pathout[$i]}
4275	if [[ ! -d $local_catalog ]]
4276	then
4277	printf " *** local directory does not exist. Trying to create:\n"
4278	printf " $local_catalog \n"
4279	mkdir -p $local_catalog
4280	fi
4281
4282	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4283	transfer_problems=true
4284	fi
4285	fi
4286	else
4287
4288	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4289	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4290	actionout[$i]=a
4291	fi
4292	fi
4293
4294
4295	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4296	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4297	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4298	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4299	if [[ "${actionout[$i]}" = fl ]]
4300	then
4301	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4302	chmod g+rx $tmp_data_catalog
4303	if [[ $files_for_pes = false ]]
4304	then
4305	printf "\n >>> OUTPUT: ${localout[$i]} to"
4306	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4307	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4308	else
4309	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4310	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4311	mkdir $tmp_data_catalog/${frelout[$i]}
4312	cd ${localout[$i]}
4313	for file in $(ls *)
4314	do
4315	ln -f $file $tmp_data_catalog/${frelout[$i]}
4316	done
4317	cd $TEMPDIR
4318	fi
4319
4320
4321	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4322	if [[ $store_on_archive_system = true ]]
4323	then
4324
4325	if [[ $archive_system = asterix ]]
4326	then
4327	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4328	if [[ $files_for_pes = false ]]
4329	then
4330	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4331	else
4332	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4333	fi
4334	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4335	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4336	echo "then" >> archive_${frelout[$i]}
4337	echo " do_stageout=false" >> archive_${frelout[$i]}
4338	echo "else" >> archive_${frelout[$i]}
4339	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4340	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4341	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4342	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4343	if [[ $files_for_pes = false ]]
4344	then
4345	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4346	else
4347	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4348	fi
4349	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4350	echo "fi" >> archive_${frelout[$i]}
4351	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4352	elif [[ $archive_system = DMF ]]
4353	then
4354	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4355	if [[ $files_for_pes = false ]]
4356	then
4357	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4358	locat=DMF
4359	exit
4360	else
4361	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4362	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4363	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4364	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4365	fi
4366	elif [[ $archive_system = tivoli ]]
4367	then
4368	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4369	if [[ $files_for_pes = false ]]
4370	then
4371	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4372	echo "set -x" >> archive_${frelout[$i]}
4373	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4374	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4375	else
4376
4377	echo "set -x" >> archive_${frelout[$i]}
4378	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4379	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4380	cd $tmp_data_catalog
4381	all_files=`ls -1 ${frelout[$i]}/*`
4382	cd - > /dev/null
4383	(( inode = 0 ))
4384	(( tp1 = tasks_per_node + 1 ))
4385	while (( inode < nodes ))
4386	do
4387	# echo "*** all_files = \"$all_files\" "
4388	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4389	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4390	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4391	# echo "*** files = \"$files\" "
4392	# echo "*** all_files = \"$all_files\" "
4393	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4394	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4395	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4396	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4397	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4398	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4399	(( inode = inode + 1 ))
4400	done
4401	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4402	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4403	fi
4404	elif [[ $archive_system = ut ]]
4405	then
4406	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4407	if [[ $files_for_pes = false ]]
4408	then
4409	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4410	echo "set -x" >> archive_${frelout[$i]}
4411	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4412	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4413	else
4414
4415	echo "set -x" >> archive_${frelout[$i]}
4416	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4417	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4418	cd $tmp_data_catalog
4419	all_files=`ls -1 ${frelout[$i]}/*`
4420	cd - > /dev/null
4421	(( inode = 0 ))
4422	(( tp1 = tasks_per_node + 1 ))
4423	while (( inode < nodes ))
4424	do
4425	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4426	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4427	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4428	(( inode = inode + 1 ))
4429	done
4430	fi
4431	elif [[ $archive_system = none ]]
4432	then
4433	printf " +++ archiving on $localhost not available!\n"
4434	fi
4435
4436	if [[ $archive_system != none ]]
4437	then
4438	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4439	then
4440	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4441	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog archive_${frelout[$i]}
4442	elif [[ $localhost = nech ]]
4443	then
4444	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4445	fi
4446	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4447	fi
4448	else
4449	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4450	fi
4451
4452
4453	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4454	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4455	if [[ $files_for_pes = false ]]
4456	then
4457	cat /dev/null > ${pathout[$i]}
4458	else
4459	mkdir -p ${pathout[$i]}
4460	fi
4461
4462	fi
4463
4464
4465	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4466	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4467	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4468	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4469	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4470	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4471	if [[ "${actionout[$i]}" = ar ]]
4472	then
4473	if [[ $files_for_pes = false ]]
4474	then
4475	printf "\n >>> OUTPUT: ${localout[$i]} to"
4476	printf "\n ${pathout[$i]}"
4477	printf "\n File will be copied to archive-system ($archive_system) !\n"
4478	else
4479	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4480	printf "\n ${pathout[$i]}"
4481	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4482	fi
4483	mv ${localout[$i]} ${frelout[$i]}
4484
4485	file_saved=false
4486
4487	if [[ $archive_system = asterix ]]
4488	then
4489	do_stageout=true
4490	(( stageout_anz = 0 ))
4491	while [[ $do_stageout = true ]]
4492	do
4493	if [[ $files_for_pes = false ]]
4494	then
4495	stageout ${frelout[$i]} > STAGE_OUTPUT
4496	else
4497	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4498	fi
4499	cat STAGE_OUTPUT
4500	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4501	then
4502	file_saved=true
4503	do_stageout=false
4504	else
4505	if [[ $files_for_pes = false ]]
4506	then
4507	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4508	else
4509	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4510	fi
4511	(( stageout_anz = stageout_anz + 1 ))
4512	if (( stageout_anz == 10 ))
4513	then
4514	printf "\n +++ stoped after 10 unsuccessful tries!"
4515	archive_save=false
4516	do_stageout=false
4517	else
4518	printf "\n *** new try to store on archive after 15 min:"
4519	sleep 900
4520	fi
4521	fi
4522	done
4523	elif [[ $archive_system = DMF ]]
4524	then
4525	if [[ $files_for_pes = false ]]
4526	then
4527	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4528	locat=DMF
4529	exit
4530	else
4531	rm -rf $ARCHIVE/${frelout[$i]}
4532	cp -r ${frelout[$i]} $ARCHIVE
4533	fi
4534	file_saved=true
4535	elif [[ $archive_system = tivoli ]]
4536	then
4537	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4538	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4539	# GELEGT WERDEN
4540	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4541	chmod g+rx $tmp_data_catalog
4542	if [[ $files_for_pes = false ]]
4543	then
4544	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4545	else
4546	mkdir $tmp_data_catalog/${frelout[$i]}
4547	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4548	fi
4549
4550	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4551	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4552	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4553	if [[ $files_for_pes = false ]]
4554	then
4555	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4556	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4557	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4558	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4559	else
4560	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4561	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4562	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4563	fi
4564
4565	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
4566	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4567	file_saved=true
4568
4569	elif [[ $archive_system = ut ]]
4570	then
4571	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4572	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4573	# GELEGT WERDEN
4574	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4575	chmod g+rx $tmp_data_catalog
4576	if [[ $files_for_pes = false ]]
4577	then
4578	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4579	else
4580	mkdir $tmp_data_catalog/${frelout[$i]}
4581	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4582	fi
4583
4584	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4585	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4586	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4587	if [[ $files_for_pes = false ]]
4588	then
4589	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4590	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4591	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4592	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4593	else
4594	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4595	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4596	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4597	fi
4598
4599	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
4600	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4601	file_saved=true
4602
4603	else
4604	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4605	archive_save=false
4606	fi
4607	if [[ $file_saved = true ]]
4608	then
4609	if [[ $files_for_pes = false ]]
4610	then
4611	cat /dev/null > ${pathout[$i]}
4612	else
4613	mkdir -p ${pathout[$i]}
4614	fi
4615	fi
4616	fi
4617
4618	# APPEND AUF LOKALER MASCHINE
4619	if [[ "${actionout[$i]}" = "a" ]]
4620	then
4621	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4622	then
4623	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4624	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4625	else
4626	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4627	cat ${localout[$i]} >> ${pathout[$i]}
4628	fi
4629	fi
4630
4631	# KOPIEREN AUF LOKALER MASCHINE
4632	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4633	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4634	then
4635
4636	# KOPIEREN AUF EINPROZESSORMASCHINE
4637	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4638	then
4639	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4640	if [[ $link_local_output = true ]]
4641	then
4642	printf " using ln -f\n"
4643	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4644	fi
4645	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4646	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4647	then
4648	if [[ $link_local_output = true ]]
4649	then
4650	printf " ln failed, using cp...\n"
4651	fi
4652	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4653	fi
4654	else
4655	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4656	if [[ $link_local_output = true ]]
4657	then
4658	printf " using ln -f\n"
4659	ln -f ${localout[$i]} ${pathout[$i]}
4660	fi
4661	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4662	if [[ ! -f "${pathout[$i]}" ]]
4663	then
4664	if [[ $link_local_output = true ]]
4665	then
4666	printf " ln failed, using cp...\n"
4667	fi
4668	cp ${localout[$i]} ${pathout[$i]}
4669	fi
4670	fi
4671
4672	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4673	then
4674
4675	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4676	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4677	# WIRD DANN KOPIERT
4678	# PER MOVE UMBENANNT WERDEN
4679	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4680	if [[ $link_local_output = true ]]
4681	then
4682	printf " using ln -f\n"
4683	mkdir ${pathout[$i]}
4684	cd ${localout[$i]}
4685	for file in $(ls *)
4686	do
4687	ln -f $file ${pathout[$i]}
4688	done
4689	cd $TEMPDIR
4690	fi
4691	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4692	if [[ ! -f "${pathout[$i]}/_0000" ]]
4693	then
4694	if [[ $link_local_output = true ]]
4695	then
4696	printf " ln failed for .../_0000, using cp...\n"
4697	fi
4698	cp -r ${localout[$i]} ${pathout[$i]}
4699	fi
4700
4701	fi
4702	fi
4703	done
4704	if (( i != 0 ))
4705	then
4706	if [[ $transfer_problems = true ]]
4707	then
4708	printf "\n$striche\n *** OUTPUT-files saved"
4709	printf "\n +++ WARNING: some data transfers failed! \n"
4710	else
4711	printf "\n$striche\n *** all OUTPUT-files saved \n"
4712	fi
4713	fi
4714
4715
4716	# EVENTUELL FOLGEJOB STARTEN
4717	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4718	if [[ -f CONTINUE_RUN ]]
4719	then
4720
4721	if [[ $archive_save = true ]]
4722	then
4723
4724	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4725	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4726	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4727	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4728	# HANDEN
4729	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4730	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4731	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4732	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4733	then
4734	mc=`echo $mc \| sed 's/#/f/g'`
4735	fi
4736
4737
4738	# JOB STARTEN
4739	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4740	echo " $mc"
4741	printf "\n$striche\n"
4742	if [[ $localhost != $fromhost ]]
4743	then
4744
4745	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms ]]
4746	then
4747	echo "*** ssh will be used to initiate restart-runs!"
4748	echo " return_addres=\"$return_addres\" "
4749	echo " return_username=\"$return_username\" "
4750	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4751	then
4752	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4753	else
4754	if [[ $localhost = ibmkisti ]]
4755	then
4756	ssh $usern@gaiad "ssh $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4757	else
4758	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4759	fi
4760	fi
4761	else
4762	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4763	locat=restart; exit
4764	fi
4765
4766	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4767	# DER AKTUELLE JOB ENDET
4768	if [[ $queue = special1q ]]
4769	then
4770	sleep 120
4771	else
4772	sleep 30
4773	fi
4774
4775	else
4776
4777	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4778	# RUFEN WERDEN, AUSSER AUF lcfimm
4779	cd $LOCAL_PWD
4780	if [[ $localhost = lcfimm ]]
4781	then
4782	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4783	else
4784	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4785	fi
4786	cd - > /dev/null
4787	fi
4788	printf "\n$striche\n *** restart-run initiated \n"
4789
4790
4791	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4792	# GEHOLT WORDEN SIND, LOESCHEN
4793	(( i = 0 ))
4794	while (( i < iin ))
4795	do
4796	(( i = i + 1 ))
4797	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4798	then
4799	rm -r $tmp_data_catalog/${frelin[$i]}
4800	fi
4801	done
4802
4803	else
4804
4805	printf "\n +++ no restart-run possible, since errors occured"
4806	printf "\n during the archive process"
4807	fi
4808
4809	fi
4810
4811
4812
4813	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4814	if [[ "$email_notification" != "none" ]]
4815	then
4816
4817	if [[ $localhost != $fromhost ]]
4818	then
4819	if [[ -f CONTINUE_RUN ]]
4820	then
4821	echo "PALM restart run necessary" > email_text
4822	echo "description header of actual run:" >> email_text
4823	cat CONTINUE_RUN >> email_text
4824	echo "mrun-command to restart:" >> email_text
4825	echo "$mc" >> email_text
4826	else
4827	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4828	fi
4829	mail $email_notification < email_text
4830	printf "\n *** email notification sent to \"$email_notification\" "
4831	fi
4832	fi
4833
4834
4835
4836	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4837	cd $HOME
4838	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4839
4840	else
4841
4842
4843	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4844	# CHENDE AKTIONEN DURCHGEFUEHRT
4845
4846	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4847	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4848	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4849	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4850	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4851	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4852	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4853	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4854	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4855	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4856	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4857	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4858	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4859	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4860	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4861	if [[ $use_openmp = true ]]
4862	then
4863	mrun_com=${mrun_com}" -O $threads_per_task"
4864	fi
4865	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4866	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4867	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4868	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4869	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4870	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4871	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4872	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4873	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4874	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4875	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4876	if [[ $do_remote = true ]]
4877	then
4878	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4879	fi
4880
4881
4882	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4883	jobfile=jobfile.$RANDOM
4884
4885
4886	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4887	echo "mkdir $TEMPDIR" >> $jobfile
4888	echo "cd $TEMPDIR" >> $jobfile
4889
4890
4891	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4892	if [[ $do_trace = true ]]
4893	then
4894	echo "set -x" >> $jobfile
4895	else
4896	echo "set +vx" >> $jobfile
4897	fi
4898
4899
4900	# initialize the environment and load modules
4901	if [[ "$init_cmds" != "" ]]
4902	then
4903	echo "$init_cmds" >> $jobfile
4904	fi
4905	if [[ "$module_calls" != "" ]]
4906	then
4907	echo "$module_calls" >> $jobfile
4908	fi
4909
4910
4911	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4912	# DATEI FUER DEN JOB
4913	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti ]]
4914	then
4915
4916	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4917	# KOPIEREN
4918	if [[ $restart_run != true ]]
4919	then
4920	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4921	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4922	fi
4923
4924	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4925	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4926	echo "set -x" >> $jobfile
4927	if [[ $host = $localhost ]]
4928	then
4929	echo "cp -r $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4930	else
4931	if [[ $host != ibmkisti ]]
4932	then
4933	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4934	else
4935	# on KISTI's IBM firewall is only opened on interactive node
4936	echo "localdir=\`pwd\`" >> $jobfile
4937	echo "ssh $remote_username@gaiad \"cd \$localdir; scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4938	fi
4939	fi
4940	echo "export SOURCES_COMPLETE=true" >> $jobfile
4941
4942	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4943	# ARBEITSVERZEICHNIS VERSCHIEBEN
4944	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4945	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4946	echo "execute_mrun=true" >> $jobfile
4947	echo " " >> $jobfile
4948
4949	else
4950
4951	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4952	# SOWIE GEGEBENENFALLS DES MAKEFILES
4953	if [[ $do_compile = true ]]
4954	then
4955
4956	source_catalog=SOURCES_FOR_RUN_$fname
4957
4958	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4959	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4960	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4961	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4962	echo "export SOURCES_COMPLETE=true" >> $jobfile
4963	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4964
4965	for filename in $source_list
4966	do
4967	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4968	echo "cat > $filename << \"%END%\"" >> $jobfile
4969	cat $source_catalog/$filename >> $jobfile
4970	echo " " >> $jobfile
4971	echo "%END%" >> $jobfile
4972	echo " " >> $jobfile
4973	done
4974
4975	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4976	echo "cat > Makefile << \"%END%\"" >> $jobfile
4977	cat $source_catalog/Makefile >> $jobfile
4978	echo " " >> $jobfile
4979	echo "%END%" >> $jobfile
4980	echo " " >> $jobfile
4981
4982	echo "cd - > /dev/null" >> $jobfile
4983
4984	fi
4985
4986
4987	# ABSPEICHERN DER KONFIGURATIONSDATEI
4988	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4989	echo "cat > $config_file << \"%END%\"" >> $jobfile
4990	cat $config_file >> $jobfile
4991	echo "%END%" >> $jobfile
4992	echo " " >> $jobfile
4993
4994
4995	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
4996	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4997	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
4998	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
4999	echo "%END%" >> $jobfile
5000	echo "chmod u+x $mrun_script_name" >> $jobfile
5001	echo "execute_mrun=true" >> $jobfile
5002	echo " " >> $jobfile
5003
5004	fi
5005
5006
5007	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5008	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5009	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5010	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5011	if [[ $do_remote = true ]]
5012	then
5013	(( i = 0 ))
5014	while (( i < iin ))
5015	do
5016	(( i = i + 1 ))
5017	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5018	if [[ "${transin[$i]}" = job ]]
5019	then
5020	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5021	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5022	echo " " >> $jobfile
5023	echo "%END%" >> $jobfile
5024	else
5025	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5026	fi
5027
5028	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5029	echo "if [[ \$? = 1 ]]" >> $jobfile
5030	echo "then" >> $jobfile
5031	echo " echo \" \" " >> $jobfile
5032	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5033	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5034	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5035	echo " execute_mrun=false" >> $jobfile
5036	echo "fi" >> $jobfile
5037	done
5038	fi
5039
5040	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5041	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5042	echo "LOCAL_PWD=$working_directory" >> $jobfile
5043	echo "export LOCAL_PWD" >> $jobfile
5044
5045	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5046	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5047	echo "export LOCAL_MRUN_PATH" >> $jobfile
5048
5049	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5050	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5051	then
5052	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5053	fi
5054
5055	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5056	echo "set -x" >> $jobfile
5057	echo "queue=$queue" >> $jobfile
5058	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5059
5060	echo 'ls -al; echo `pwd`' >> $jobfile
5061	echo "cd \$HOME" >> $jobfile
5062	echo "rm -rf $TEMPDIR" >> $jobfile
5063
5064
5065
5066
5067	# JOB PER SUBJOB STARTEN
5068	if [[ $silent = false ]]
5069	then
5070	printf "\n "
5071	else
5072	printf "\n\n"
5073	fi
5074
5075	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
5076	rm -rf $jobfile
5077
5078
5079	fi # ENDE REMOTE-TEIL
5080
5081
5082
5083	# ENDE DER PROZEDUR

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