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source: palm/trunk/SCRIPTS/mrun @ 1249

Last change on this file since 1249 was 1242, checked in by heinze, 11 years ago
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1	#!/bin/ksh
2
3	# mrun - script for running PALM jobs
4
5	#--------------------------------------------------------------------------------#
6	# This file is part of PALM.
7	#
8	# PALM is free software: you can redistribute it and/or modify it under the terms
9	# of the GNU General Public License as published by the Free Software Foundation,
10	# either version 3 of the License, or (at your option) any later version.
11	#
12	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
13	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
14	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
15	#
16	# You should have received a copy of the GNU General Public License along with
17	# PALM. If not, see <http://www.gnu.org/licenses/>.
18	#
19	# Copyright 1997-2012 Leibniz University Hannover
20	#--------------------------------------------------------------------------------#
21	#
22	# Current revisions:
23	# ------------------
24	#
25	#
26	# Former revisions:
27	# -----------------
28	# $Id: mrun 1242 2013-10-30 11:50:11Z heinze $
29	#
30	# 1241 2013-10-30 11:36:58Z heinze
31	# Enable use of nudging input and input of large scale forcing from
32	# external files
33	#
34	# 1229 2013-09-20 06:55:19Z raasch
35	# further adjustments for lccrayb
36	#
37	# 1224 2013-09-16 07:27:23Z raasch
38	# first adjustments for lccrayb
39	#
40	# 1210 2013-08-14 10:58:20Z raasch
41	# fftw support added
42	#
43	# 1201 2013-07-10 16:17:59Z witha
44	# adjustments for Forwind cluster (lcflow)
45	#
46	# 1199 2013-07-05 14:52:22Z raasch
47	# adjustments for CSC Helsinki (lccrayf),
48	# executables for batch jobs can be created in advance, in order to avoid calling
49	# the compiler within the batch job (only works if batch jobs are submitted on
50	# local host)
51	#
52	# 1190 2013-06-25 09:39:21Z heinze
53	# enable use of automatic restarts for ibmh
54	# use of cluster/express queue enabled (ibmh)
55	#
56	# 1124 2013-04-09 15:46:52Z raasch
57	# variable "memory" is exported via typeset option -x, because otherwise an unknown
58	# side effect may lead to data loss while getopts is reading the script-option arguments
59	#
60	# 1122 2013-04-09 08:37:16Z heinze
61	# Bugfix: change type of variable last_char
62	#
63	# 1119 2013-04-05 15:11:19Z raasch
64	# Bugfix for setting -T option for subjob
65	#
66	# 1108 2013-03-05 07:03:32Z raasch
67	# bugfix for coupled runs on lckyut/lckyuh
68	#
69	# 1106 2013-03-04 05:31:38Z raasch
70	# --stdin argument for mpiexec on lckyuh
71	# -y and -Y settings output to header
72	#
73	# 1103 2013-02-20 02:15:53Z raasch
74	# default script runs again under ksh, because of unsolved problems with read
75	# from stdin: when bash script is called from a ksh, message "read error: 0:
76	# Resource temporarily unavailable" appears and script does not stop,
77	# further bash compatibility adjustments,
78	# shebang line replaced by /bin/bash when running jobs on lckyuh; no restarts
79	# on lckyuh, but mrun does not terminate and issues a warning instead
80	#
81	# 1101 2013-02-17 10:20:21Z raasch
82	# script now running under bash instead of ksh, which required small adjustments
83	# (output formatting with printf instead "typeset -L/-R", print replaced by echo,
84	# read from stdin),
85	# cross compilername on lckyuh compute nodes replaced by real compiler name
86	#
87	# 1099 2013-02-10 01:47:43Z raasch
88	# adjustments for Kyushu-University computing center (lckyuh - hayaka)
89	# and for Forwind cluster (lcflow)
90	# small further adjustments for lckyut
91	#
92	# 1094 2013-02-03 01:52:12Z raasch
93	# explicit ssh/scp port can be set in config file with environment variable
94	# scp_port. This port is handled to all ssh/scp/batch_scp calls.
95	# decalpha parts (yonsei) removed
96	#
97	# 2013-02-02 07:06:13Z raasch
98	# adjustments for Kyushu-University computing center (lckyut - tatara)
99	#
100	# 1083 2013-01-04 10:22:09Z maronga
101	# bugfix in parameter file check (read %cpp_options was missing)
102	#
103	# 1069 2012-11-28 16:18:43Z maronga
104	# bugfix: coupling mode was always set to mpi2, typos removed
105	#
106	# 1058 2012-11-21 07:00:35Z raasch
107	# Intel inspector (inspxe) is given the number of PEs instead of the number of
108	# nodes
109	#
110	# 1046 2012-11-09 14:38:45Z maronga
111	# code put under GPL (PALM 3.9)
112	#
113	# 21/03/94 - Siggi - first version finished
114	# 03/03/94 - Siggi - script development started
115	#
116	#--------------------------------------------------------------------------------#
117	# mrun - script for running PALM jobs
118	#--------------------------------------------------------------------------------#
119
120
121
122	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
123
124	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
125	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
126	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
127
128	AddFilenames=""
129	additional_conditions=""
130	add_source_path=""
131	afname=""
132	archive_save=true
133	archive_system=none
134	check_namelist_files=true
135	combine_plot_fields=true
136	compiler_name=""
137	cond1=""
138	cond2=""
139	config_file=.mrun.config
140	coupled_dist=""
141	coupled_mode="mpi1"
142	cpp_opts=""
143	cpp_options=""
144	cpumax=0
145	cpurest=0
146	create_executable_for_batch=false
147	delete_temporary_catalog=true
148	do_batch=false
149	do_compile=true
150	do_remote=false
151	do_stagein=true
152	do_stageout=true
153	do_trace=false
154	email_notification="none"
155	exclude=""
156	executable=""
157	execution_error=false
158	fftw_inc=""
159	fftw_lib=""
160	fftw_support=false
161	fimm=false
162	fname=test
163	fromhost=""
164	global_revision=""
165	group_number=none
166	host=""
167	host_file=""
168	hp=""
169	ignore_archive_error=false
170	input_list=""
171	interpreted_config_file=""
172	job_catalog="~/job_queue"
173	job_on_file=""
174	keep_data_from_previous_run=false
175	link_local_input=false
176	link_local_output=false
177	localhost_realname=$(hostname)
178	local_compile=false
179	local_dvrserver_running=.FALSE.
180	locat=normal
181	mainprog=""
182	makefile=""
183	max_par_io_str=""
184	mc=$0
185	while [[ $(echo $mc \| grep -c "/") != 0 ]]
186	do
187	mc=`echo $mc \| cut -f2- -d"/"`
188	done
189	module_calls=""
190	mrun_script_name=$mc
191	netcdf_inc=""
192	netcdf_lib=""
193	netcdf_support=false
194	node_usage=default
195	numprocs=""
196	numprocs_atmos=0
197	numprocs_ocean=0
198	OOPT=""
199	openmp=false
200	output_list=""
201	package_list=""
202	punkte="..........................................................."
203	queue=none
204	read_from_config=""
205	restart_run=false
206	if [[ `hostname` = rte10 ]]
207	then
208	return_addres=133.5.185.60
209	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
210	elif [[ `hostname` = climate0 ]]
211	then
212	return_addres=165.132.26.68
213	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
214	elif [[ `hostname` = urban00 ]]
215	then
216	return_addres=147.46.30.151
217	echo "+++ WARNING: fixed return_addres = $return_addres is used !!!!!"
218	else
219	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
220	fi
221	return_password=""
222	return_username=$LOGNAME
223	remotecall=false
224	remote_username=""
225	run_coupled_model=false
226	run_mode=""
227	scirocco=false
228	store_on_archive_system=false
229	striche=" ----------------------------------------------------------------------------"
230	silent=false
231	source_list=""
232	source_path=SOURCE
233	tasks_per_node=""
234	threads_per_task=1
235	tmpcreate=false
236	tmp_data_catalog=""
237	transfer_problems=false
238	usern=$LOGNAME
239	use_openmp=false
240	version="MRUN 2.0 Rev$Rev: 1242 $"
241	working_directory=`pwd`
242	TOPT=""
243	XOPT=""
244	zeit=$( date \| cut -c 12-19 )
245
246	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 stagein_anz=0 stageout_anz=0
247	typeset -x -i memory=0 # has to be exported here, otherwise an unknown side
248	# effect may cause data loss when getopts is reading the
249	# script-option arguments
250	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek last_char_int maxcycle minuten nodes pes sekunden tp1
251
252
253
254
255	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
256	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
257
258	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
259	# EXPORTIERT WERDEN
260	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
261	export group_number input_list numprocs output_list queue run_mode
262
263
264
265	# FEHLERBEHANDLUNG
266	# BEI EXIT:
267	trap 'rm -rf $working_directory/tmp_mrun
268	if [[ $locat != localhost ]]
269	then
270	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
271	# then
272	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
273	#MRUN-calls on $localhost
274	#
275	#date and time user localhost remotehost termination mrun-command
276	#--------------------------------------------------------------------------------------------------------------------
277	#%STATEND%
278	# chmod 666 ${mrun_path}/statistik/mrun_statistik
279	# fi
280	#
281	# # EINTRAG IN DIE STATISTIK-DATEI
282	# string1=`date` #-L35
283	# string2=$usern #-L12
284	# string3=$localhost_realname #-L12
285	# string4=$host #-L12
286	# string5=$locat #-L12
287	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
288	# then
289	# if [[ $do_batch = true ]]
290	# then
291	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
292	# else
293	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
294	# fi
295	# fi
296	echo " " > /dev/null
297	fi
298
299	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
300	then
301
302	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
303	(( i = 0 ))
304	while (( i < iec ))
305	do
306	(( i = i + 1 ))
307	printf "\n *** Execution of ERROR-command:\n"
308	printf " >>> ${err_command[$i]}\n"
309	eval ${err_command[$i]}
310	done
311	if [[ -n $interpreted_config_file ]]
312	then
313	rm -rf $interpreted_config_file
314	fi
315	if [[ -n .mrun_environment ]]
316	then
317	rm -rf .mrun_environment
318	fi
319	if [[ $tmpcreate = true ]]
320	then
321	printf "\n *** Contents of \"$TEMPDIR\":\n"
322	ls -al; cd
323	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
324	fi
325	if [[ "$dvrserver_id" != "" ]]
326	then
327	echo "+++ killing dvrserver_id=$dvrserver_id"
328	kill $dvrserver_id
329	fi
330	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
331	then
332	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
333	fi
334	printf "\n\n+++ MRUN killed \n\n"
335	elif [[ $locat != control_c ]]
336	then
337	printf "\n\n --> all actions finished\n\n"
338	printf " Bye, bye $usern !!\n\n"
339	fi' exit
340
341
342	# BEI TERMINAL-BREAK:
343	trap 'rm -rf $working_directory/tmp_mrun
344	rm -rf $working_directory/tmp_check_namelist_files
345	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
346	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
347	then
348	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
349	fi
350	if [[ "$dvrserver_id" != "" ]]
351	then
352	echo "+++ killing dvrserver_id=$dvrserver_id"
353	kill $dvrserver_id
354	fi
355	printf "\n+++ MRUN killed by \"^C\" \n\n"
356	locat=control_c
357	exit
358	' 2
359
360
361	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
362	# BEEN SET
363	if [[ "$PALM_BIN" = "" ]]
364	then
365	printf "\n +++ environment variable PALM_BIN has not been set"
366	printf "\n please set it to the directory where the PALM scripts are located"
367	locat=palm_bin; exit
368	fi
369	export PATH=$PALM_BIN:$PATH
370
371
372
373	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
374	# FUER FOLGEJOBS BENOETIGT WIRD
375	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:O:p:P:q:r:R:s:St:T:u:U:vw:xX:yY:zZ option
376	do
377	case $option in
378	(a) afname=$OPTARG;;
379	(A) store_on_archive_system=true; mc="$mc -A";;
380	(b) do_batch=true; mc="$mc -b";;
381	(B) delete_temporary_catalog=false; mc="$mc -B";;
382	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
383	(C) restart_run=true; mc="$mc -C";;
384	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
385	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
386	(F) job_on_file="-D"; mc="$mc -F";;
387	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
388	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
389	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
390	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
391	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
392	(I) ignore_archive_error=true; mc="$mc -I";;
393	(k) keep_data_from_previous_run=true; mc="$mc -k";;
394	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
395	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
396	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
397	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
398	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
399	(O) use_openmp=true; threads_per_task=$OPTARG; mc="$mc -O$OPTARG";;
400	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
401	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
402	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
403	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
404	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
405	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
406	(S) read_from_config=false; mc="$mc -S";;
407	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
408	(T) mrun_tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
409	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
410	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
411	(v) silent=true; mc="$mc -v";;
412	(w) max_par_io_str=$OPTARG; mc="$mc -w$OPTARG";;
413	(x) do_trace=true;set -x; mc="$mc -x";;
414	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
415	(y) ocean_file_appendix=true; mc="$mc -y";;
416	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
417	(z) check_namelist_files=false; mc="$mc -z";;
418	(Z) combine_plot_fields=false; mc="$mc -Z";;
419	(\?) printf "\n +++ unknown option $OPTARG \n"
420	printf "\n --> type \"$0 ?\" for available options \n"
421	locat=parameter;exit;;
422	esac
423	done
424
425
426	# EVTL. POSITIONSPARAMETER EINLESEN
427	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
428	(( to_shift = $OPTIND - 1 ))
429	shift $to_shift
430
431	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
432	if [[ "$1" = "?" ]]
433	then
434	(printf "\n *** mrun can be called as follows:\n"
435	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. -z -Z <modus> \n"
436	printf "\n Description of available options:\n"
437	printf "\n Option Description Default-Value"
438	printf "\n -a base name of input files equiv. -d"
439	printf "\n -A archiving when using file-attribute fl"
440	printf "\n -b batch-job on local machine ---"
441	printf "\n -B do not delete temporary directory at end ---"
442	printf "\n -c configuration file .mrun.config"
443	printf "\n -d base name of files attached to program test"
444	printf "\n -D preprocessor(cpp)-directives \"\" "
445	printf "\n -F create remote job file only ---"
446	printf "\n -h execution host $localhost_realname"
447	printf "\n -i INPUT control list \"\" "
448	printf "\n -I archiving errors of previous batch-jobs"
449	printf "\n will be ignored"
450	printf "\n -k keep data from previous run"
451	printf "\n -K additional conditions for controling"
452	printf "\n usage of conditional code and"
453	printf "\n env-variables in configuration file \"\" "
454	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
455	printf "\n -M Makefile name Makefile"
456	printf "\n -n node usage (shared/not_shared) depending on -h"
457	printf "\n -o OUTPUT control list \"\" "
458	printf "\n -O use OpenMP ---"
459	printf "\n -p software package list \"\" "
460	printf "\n -q queue \"$queue\" "
461	printf "\n -r run control list (combines -i -o) \"\" "
462	printf "\n -s filenames of routines to be compiled \"\" "
463	printf "\n must end with .f, .f90, .F, or .c !"
464	printf "\n use \"..\" for more than one file and wildcards"
465	printf "\n -s LM compiles all locally modified files"
466	printf "\n -S config file interpreted by shellscript ---"
467	printf "\n -t allowed cpu-time in seconds (batch) 0"
468	printf "\n -T tasks per node depending on -h"
469	printf "\n -u username on remote machine \"\" "
470	printf "\n -v no prompt for confirmation ---"
471	printf "\n -w maximum parallel io streams as given by -X"
472	printf "\n -x tracing of mrun for debug purposes ---"
473	printf "\n -X # of processors (on parallel machines) 1"
474	printf "\n -y add appendix \"_O\" to all local output"
475	printf "\n files (ocean precursor runs followed by"
476	printf "\n coupled atmosphere-ocean runs) ---"
477	printf "\n -Y run coupled model, \"#1 #2\" with"
478	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
479	printf "\n -z disable a priori parameter file check ---"
480	printf "\n -Z skip combine_plot_fields at the end of "
481	printf "\n the simulation ---"
482	printf "\n "
483	printf "\n Possible values of positional parameter <modus>:"
484	printf "\n \"?\" - this outline \n\n") \| more
485	exit
486	elif [[ "$1" != "" ]]
487	then
488	printf "\n +++ positional parameter $1 unknown \n"
489	locat=parameter; exit
490	fi
491
492
493
494	# KURZE STARTMELDUNG
495	printf "\n*** $version "
496	printf "\n will be executed. Please wait ..."
497
498
499
500	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
501	if [[ ! -f $config_file ]]
502	then
503	printf "\n\n +++ configuration file: "
504	printf "\n $config_file"
505	printf "\n does not exist"
506	locat=connect; exit
507	fi
508
509
510	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
511	line=""
512	grep "%host_identifier" $config_file > tmp_mrun
513	while read line
514	do
515	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
516	then
517	HOSTNAME=`echo $line \| cut -d" " -s -f2`
518	host_identifier=`echo $line \| cut -d" " -s -f3`
519	if [[ $localhost_realname = $HOSTNAME ]]
520	then
521	localhost=$host_identifier
522	break
523	fi
524	fi
525	done < tmp_mrun
526
527	if [[ "$localhost" = "" ]]
528	then
529	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
530	printf "\n for local host \"$localhost_realname\"."
531	printf "\n Please add line"
532	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
533	printf "\n to the configuration file."
534	locat=localhost; exit
535	fi
536
537
538	# HOSTSPEZIFISCHE VARIABLEN SETZEN
539	case $localhost_realname in
540	(r1\|r2\|h01\|b01) archive_system=tivoli;;
541	(cs*) archive_system=ut;;
542	(fimm.bccs.uib.no) fimm=true;;
543	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
544	(scirocco) scirocco=true;;
545	esac
546
547
548
549	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
550	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
551	[[ "$afname" = "" ]] && afname=$fname
552
553
554	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
555	if [[ "$run_mode" != "" ]]
556	then
557	input_list="$input_list $run_mode"
558	output_list="$output_list $run_mode"
559	fi
560
561
562	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
563	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
564	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
565	# STARTET)
566	if [[ "$fromhost" = "" ]]
567	then
568	fromhost=$localhost
569	fi
570
571
572	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
573	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
574	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
575	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
576	if [[ -n $host && "$host" != $localhost ]]
577	then
578	do_batch=true
579	do_remote=true
580	case $host in
581	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|nech\|necriam\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
582	(*) printf "\n"
583	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
584	printf "\n is not available"
585	locat=nqs; (( iec = 0 )); exit;;
586	esac
587	else
588	host=$localhost
589	fi
590
591
592	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
593	if [[ -n $additional_conditions ]]
594	then
595	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
596	cond1=`echo $additional_conditions \| cut -d" " -f1`
597	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
598	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
599	if [[ -n $dummy ]]
600	then
601	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
602	locat=options; exit
603	fi
604	block=_$cond1
605	[[ -n $cond2 ]] && block=${block}_$cond2
606	fi
607
608
609	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
610	if [[ $run_coupled_model = true ]]
611	then
612
613	if [[ -n $coupled_dist ]]
614	then
615
616	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
617	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
618
619	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
620	then
621
622	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
623	printf "\n PEs (total) : $numprocs"
624	printf "\n PEs (atmosphere): $numprocs_atmos"
625	printf "\n PEs (ocean) : $numprocs_ocean"
626	locat=coupling; exit
627
628	fi
629
630	else
631
632	(( numprocs_ocean = $numprocs / 2 ))
633	(( numprocs_atmos = $numprocs / 2 ))
634
635	fi
636	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
637
638	# GET coupled_mode FROM THE CONFIG FILE
639	line=""
640	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
641	while read line
642	do
643	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && $(echo $line \| cut -d" " -s -f4) = $cond1 && $(echo $line \| cut -d" " -s -f4) = $cond2 ]]
644	then
645	coupled_mode="mpi2"
646	fi
647	done < tmp_mrun
648
649	fi
650
651
652	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
653	# ARCHIVIERUNG FEHLGESCHLAGEN IST
654	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
655	then
656	if [[ $ignore_archive_error = false ]]
657	then
658	printf "\n +++ data archiving of previous run failed"
659	printf "\n see directory \~/job_queue on remote machine"
660	locat=archive; exit
661	else
662	printf "\n +++ warning: data archiving in a previous run failed"
663	printf "\n MRUN continues, trying to get backup copy"
664	fi
665	fi
666
667
668	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
669	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
670	mrun_memory=$memory
671	mrun_group_number=$group_number
672	mrun_cpumax=$cpumax
673	mrun_numprocs=$numprocs
674
675
676	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
677	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
678	if [[ "$read_from_config" = false ]]
679	then
680
681	[[ $silent = false ]] && printf "\n Reading the configuration file... "
682	while read zeile
683	do
684	[[ $silent = false ]] && printf "."
685
686
687	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
688	# ERSETZEN
689	eval zeile=\"$zeile\"
690
691
692	# INTERPRETATION DER ZEILE
693	if [[ "$(echo $zeile)" = "" ]]
694	then
695	# LEERZEILE, KEINE AKTION
696	continue
697
698	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
699	then
700
701	# ZEILE IST KOMMENTARZEILE
702	true
703
704	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
705	then
706
707	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
708	zeile=$(echo $zeile \| cut -c2-)
709	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
710	var=`echo $zeile \| cut -d" " -f1`
711	value=`echo $zeile \| cut -d" " -s -f2`
712	for_host=`echo $zeile \| cut -d" " -s -f3`
713	for_cond1=`echo $zeile \| cut -d" " -s -f4`
714	for_cond2=`echo $zeile \| cut -d" " -s -f5`
715
716	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
717	then
718
719	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
720	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
721	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
722
723
724	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
725	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
726	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
727	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
728	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
729	# KONFIGURATIONSDATEI
730	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
731	then
732	eval $var=\$value
733
734	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
735	if [[ $do_trace = true ]]
736	then
737	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
738	fi
739	fi
740
741	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
742	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
743	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
744	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
745	if [[ $var = host ]]
746	then
747	if [[ -n $host && "$host" != $localhost ]]
748	then
749	do_batch=true
750	do_remote=true
751	case $host in
752	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
753	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
754	printf "\n is not available"
755	locat=nqs; exit;;
756	esac
757	else
758	host=$localhost
759	fi
760	fi
761
762	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
763	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
764	# DEN PROGRAMMEN BENOETIGT WERDEN
765	export $var
766	fi
767
768
769
770
771	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
772	then
773
774	# ZEILE DEFINIERT ERROR-KOMMANDO
775	(( iec = iec + 1 ))
776	zeile=$(echo $zeile \| cut -c4-)
777	err_command[$iec]="$zeile"
778
779	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
780	then
781
782	# ZEILE DEFINIERT INPUT-KOMMANDO
783	(( iic = iic + 1 ))
784	zeile=$(echo $zeile \| cut -c4-)
785	in_command[$iic]="$zeile"
786
787	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
788	then
789
790	# ZEILE DEFINIERT OUTPUT-KOMMANDO
791	(( ioc = ioc + 1 ))
792	zeile=$(echo $zeile \| cut -c4-)
793	out_command[$ioc]="$zeile"
794
795	else
796
797	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
798	# s2a: in/out - Feld
799	# s2b: loc - Feld (optional)
800	# s2c: tr/ar - Feld (optional)
801	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
802	s1=`echo $zeile \| cut -d" " -f1`
803	s2=`echo $zeile \| cut -d" " -s -f2`
804	s2a=$(echo $s2 \| cut -d":" -f1)
805	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
806	then
807	s2b=""
808	s2c=""
809	else
810	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
811	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
812	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
813	fi
814	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
815	s3=`echo $zeile \| cut -d" " -f3`
816	s4=`echo $zeile \| cut -d" " -s -f4`
817	s5=`echo $zeile \| cut -d" " -s -f5`
818	s6=`echo $zeile \| cut -d" " -s -f6`
819
820
821	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
822	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
823	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
824	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
825	# HANDEN SEIN MUSS (D.H. s2b = loc)
826	IFSALT="$IFS"; IFS="$IFS:"
827	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
828	then
829	found=false
830	for actual in $input_list
831	do
832	for formal in $s3
833	do
834	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
835	done
836	done
837	if [[ $found = true ]]
838	then
839	(( iin = iin + 1 ))
840	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
841	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
842	extin[$iin]=$s6
843	fi
844	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
845	then
846	found=false
847	for actual in $output_list
848	do
849	for formal in $s3
850	do
851	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
852	done
853	done
854	if [[ $found = true ]]
855	then
856	(( iout = iout + 1 ))
857	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
858	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
859	fi
860	elif [[ "$s2a" != in && "$s2a" != out ]]
861	then
862	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
863	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
864	locat=connect; exit
865	fi
866	IFS="$IFSALT"
867	fi
868	done < $config_file
869
870	else
871
872
873	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
874	[[ $silent = false ]] && printf "..."
875	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
876	export interpreted_config_file=.icf.$RANDOM
877
878
879
880	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
881	# VERFUEGUNG STELLEN
882	cat > .mrun_environment << %%END%%
883	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
884	config_file = '$config_file', do_remote = '$do_remote',
885	do_trace = '$do_trace', host = '$host',
886	input_list = '$input_list', icf = '$interpreted_config_file',
887	localhost = '$localhost', output_list = '$output_list' /
888
889	%%END%%
890
891	if [[ $localhost_realname = "sx-fep" ]]
892	then
893	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
894	else
895
896	if [[ "$host" != $localhost ]]
897	then
898
899	# REMOTE JOB FROM LOCAL HOST: JUST TAKE THE FIRST EXECUTABLE FOUND
900	interpret_config_executable=`ls -1 ${PALM_BIN}/interpret_config*.x 2>/dev/null`
901	if [[ $? != 0 ]]
902	then
903	printf "\n\n +++ no interpret_config found"
904	printf "\n run \"mbuild -u -h ...\" to generate utilities for this host"
905	locat=interpret_config; exit
906	fi
907	interpret_config_executable=`echo $interpret_config_executable \| cut -d" " -f1`
908	$interpret_config_executable
909
910	else
911
912	# CHECK, IF THERE IS AN EXECUTABLE FOR THE BLOCK
913	if [[ ! -f ${PALM_BIN}/interpret_config${block}.x ]]
914	then
915	printf "\n\n +++ no interpret_config found for given block \"$cond1 $cond2\""
916	printf "\n run \"mbuild -u -h ...\" to generate utilities for this block"
917	locat=interpret_config; exit
918	else
919	interpret_config${block}.x
920	fi
921
922	fi
923	fi
924	rm .mrun_environment
925
926
927	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
928	chmod u+x $interpreted_config_file
929	export PATH=$PATH:.
930	. $interpreted_config_file
931	rm $interpreted_config_file
932
933	fi
934
935
936	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
937	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
938	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
939	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
940	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
941	[[ "$max_par_io_str" != "" ]] && maximum_parallel_io_streams=$max_par_io_str
942	[[ "$mrun_tasks_per_node" != "" ]] && tasks_per_node=$mrun_tasks_per_node
943
944
945	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
946	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
947	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
948	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
949	if [[ "$SOURCES_COMPLETE" = "" ]]
950	then
951
952	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
953	# VEREINBART WURDE
954	source_path=""
955	line=""
956	grep "%source_path" $config_file > tmp_mrun
957	while read line
958	do
959	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
960	then
961	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
962	then
963	global_source_path=`echo $line \| cut -d" " -f2`
964	fi
965	fi
966	done < tmp_mrun
967
968	line=""
969	found=false
970	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
971	while read line
972	do
973	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
974	then
975	if [[ $found = true ]]
976	then
977	printf "\n\n +++ more than one source path found in configuration file"
978	printf "\n for local host \"$localhost\" "
979	locat=source_path; exit
980	fi
981	source_path=`echo $line \| cut -d" " -f2`
982	found=true
983	fi
984	done < tmp_mrun
985	rm tmp_mrun
986
987	if [[ "$source_path" = "" ]]
988	then
989	if [[ "$global_source_path" != "" ]]
990	then
991	source_path=$global_source_path
992	else
993	printf "\n\n +++ no source path found in configuration file"
994	printf "\n for local host \"$localhost\" "
995	locat=source_path; exit
996	fi
997	fi
998	eval source_path=$source_path
999
1000	if [[ ! -d $source_path ]]
1001	then
1002	printf "\n\n +++ source path \"$source_path\" on local host"
1003	printf "\n \"$localhost\" does not exist"
1004	locat=source_path; exit
1005	fi
1006
1007	fi
1008
1009
1010	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
1011	# DURCH OPTION -G MITGETEILT)
1012	if [[ "$global_revision" = "" && $host != "ibmkisti" ]]
1013	then
1014	global_revision=`svnversion $source_path 2>/dev/null`
1015	global_revision="Rev: $global_revision"
1016	fi
1017
1018
1019	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
1020	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
1021	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
1022	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
1023	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
1024	if [[ -n $host && "$host" != $localhost ]]
1025	then
1026	do_batch=true
1027	do_remote=true
1028	case $host in
1029	(ibm\|ibmh\|ibmkisti\|ibmku\|ibms\|ibmy\|lccrayb\|lccrayf\|lcflow\|lckyoto\|lcsgib\|lcsgih\|nech\|necriam\|unics\|lcxe6\|lcxt5m\|lck\|lckiaps\|lckordi\|lckyuh\|lckyut\|lcsb) true;;
1030	(*) printf "\n"
1031	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
1032	printf "\n is not available"
1033	locat=nqs; (( iec = 0 )); exit;;
1034	esac
1035	else
1036	host=$localhost
1037	fi
1038
1039
1040	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
1041	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
1042	then
1043
1044	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
1045	if [[ ! -n $numprocs ]]
1046	then
1047	printf "\n"
1048	printf "\n +++ option \"-K parallel\" requires additional specification"
1049	printf "\n of the number of processors to be used by"
1050	printf "\n mrun-option \"-X\" or by environment-variable"
1051	printf "\n \"numprocs\" in the configuration file"
1052	locat=numprocs; (( iec = 0 )); exit
1053	fi
1054
1055	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
1056	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
1057	# GESAMTPROZESSORANZAHL IST
1058	if [[ "$tasks_per_node" = "" && $host != lcflow && $host != lcxt5m ]]
1059	then
1060	printf "\n"
1061	printf "\n +++ option \"-T\" (tasks per node) is missing"
1062	printf "\n set -T option or define tasks_per_node in the config file"
1063	locat=tasks_per_node; (( iec = 0 )); exit
1064	fi
1065	if [[ $host != lcflow && $host != lcxt5m ]]
1066	then
1067	(( ival = $tasks_per_node ))
1068	(( pes = numprocs ))
1069	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
1070	# then
1071	# (( pes = pes - 1 ))
1072	# fi
1073	(( ii = pes / ival ))
1074	if (( pes - ii * ival > 0 ))
1075	then
1076	printf "\n"
1077	printf "\n +++ tasks per node (option \"-T\") must be an integral"
1078	printf "\n divisor of the total number of processors (option \"-X\")"
1079	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1080	locat=tasks_per_node; (( iec = 0 )); exit
1081	fi
1082	fi
1083
1084
1085	# IBMY HAT NUR EINEN KNOTEN
1086	if [[ $host = ibmy ]]
1087	then
1088	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
1089	then
1090	printf "\n"
1091	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
1092	printf "\n total number of processors (option \"-X\")"
1093	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
1094	locat=tasks_per_node; (( iec = 0 )); exit
1095	fi
1096	fi
1097
1098
1099	# SETTINGS FOR SUBJOB-COMMAND
1100	OOPT="-O $threads_per_task"
1101
1102	# GESAMTZAHL DER KNOTEN BESTIMMEN
1103	if [[ "$tasks_per_node" != "" ]]
1104	then
1105	TOPT="-T $tasks_per_node"
1106	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
1107	fi
1108
1109	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
1110	# SETZEN
1111	if [[ $node_usage = default ]]
1112	then
1113	if [[ $host = ibms ]]
1114	then
1115	node_usage=shared
1116	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
1117	then
1118	node_usage=singlejob
1119	else
1120	node_usage=not_shared
1121	fi
1122	fi
1123
1124	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" ]]
1125	then
1126	printf "\n"
1127	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
1128	printf "\n \"shared\" or \"not_shared\""
1129	locat=tasks_per_node; (( iec = 0 )); exit
1130	fi
1131
1132	fi
1133
1134	# PRUEFEN, OB HOSTFILE EXISTIERT
1135	if [[ -n $hostfile ]]
1136	then
1137	if [[ ! -f $hostfile ]]
1138	then
1139	printf "\n"
1140	printf "\n +++ hostfile \"$hostfile\" does not exist"
1141	locat=hostfile; exit
1142	fi
1143	fi
1144
1145	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
1146	if [[ $host = ibmy && $do_remote = false ]]
1147	then
1148	if [[ ! -f $HOME/.rhosts ]]
1149	then
1150	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
1151	printf "\n\n *** file:"
1152	printf "\n $HOME/.rhosts"
1153	printf "\n was created\n"
1154	fi
1155	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
1156	then
1157	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
1158	printf "\n\n *** file:"
1159	printf "\n $HOME/.rhosts"
1160	printf "\n was extended by the name of the current host\n"
1161	fi
1162	fi
1163
1164
1165	# Set default value for the maximum number of parallel io streams
1166	if [[ "$maximum_parallel_io_streams" = "" ]]
1167	then
1168	maximum_parallel_io_streams=$numprocs
1169	fi
1170
1171
1172	# Set port number option for calls of ssh/scp, subjob and batch_scp scripts
1173	if [[ "$scp_port" != "" ]]
1174	then
1175	PORTOPT="-P $scp_port"
1176	SSH_PORTOPT="-p $scp_port"
1177	fi
1178
1179
1180	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
1181	if [[ $queue = none ]]
1182	then
1183	case $host in
1184	(ibmh) queue=cluster;;
1185	(ibmkisti) queue=class.32plus;;
1186	(ibmy) queue=parallel;;
1187	(lckiaps) queue=normal;;
1188	(lckyoto) queue=ph;;
1189	(lckyuh) queue=fx-single;;
1190	(lckyut) queue=cx-single;;
1191	(lcsgib) queue=testq;;
1192	(lcsgih) queue=testq;;
1193	(lctit) queue=S;;
1194	(nech) queue=none;;
1195	(necriam) queue=SP;;
1196	(unics) queue=unics;;
1197	esac
1198	fi
1199
1200
1201	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
1202	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1203	# ERMITTELN
1204	(( i = 0 ))
1205	while (( i < iin ))
1206	do
1207	(( i = i + 1 ))
1208	(( maxcycle = 0 ))
1209
1210	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
1211	if [[ "${actionin[$i]}" = di ]]
1212	then
1213	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
1214	# REM-MASCHINE AUSWERTEN
1215	eval filename=${pathin[$i]}/${endin[$i]}
1216	else
1217	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
1218	# REM-MASCHINE AUSWERTEN
1219	eval filename=${pathin[$i]}/${afname}${endin[$i]}
1220	fi
1221	eval pathname=${pathin[$i]}
1222
1223	# SAVE INPUT FILE NAME FOR PARAMETER FILE CHECK
1224	if [[ ("${transin[$i]}" = job) && (-f $filename) ]]
1225	then
1226	filename_input=$filename
1227	fi
1228
1229	# PRUEFEN AUF VORHANDENSEIN
1230	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1231	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1232	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1233	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1234	then
1235	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
1236	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
1237	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
1238	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
1239	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
1240	if [[ "${transin[$i]}" != "locopt" ]]
1241	then
1242	printf "\n\n +++ INPUT-file: "
1243	if [[ "${extin[$i]}" = "" ]]
1244	then
1245	printf "\n $filename"
1246	else
1247	printf "\n $filename.${extin[$i]}"
1248	fi
1249	printf "\n does not exist\n"
1250	locat=input; exit
1251	else
1252	transin[$i]="unavailable"
1253	fi
1254	else
1255
1256	# ZYKLUSNUMMER FESTSTELLEN
1257	ls -1 -d $filename > filelist 2>/dev/null
1258	ls -1 -d $filename.* >> filelist 2>/dev/null
1259	while read zeile
1260	do
1261	cycle=$(echo $zeile \| cut -f2 -d".")
1262	if [[ "$cycle" = "$zeile" ]]
1263	then
1264	(( icycle = 0 ))
1265	elif [[ "$cycle" = "${extin[$i]}" ]]
1266	then
1267	(( icycle = 0 ))
1268	else
1269	(( icycle = $cycle ))
1270	fi
1271	if (( icycle > maxcycle ))
1272	then
1273	(( maxcycle = icycle ))
1274	file_to_be_used=$zeile
1275	fi
1276	done <filelist
1277	rm filelist
1278
1279	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
1280	if (( maxcycle > 0 ))
1281	then
1282	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1283	then
1284	filename=${filename}.$maxcycle.${extin[$i]}
1285	else
1286	filename=${filename}.$maxcycle
1287	fi
1288	else
1289	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
1290	then
1291	filename=${filename}.${extin[$i]}
1292	fi
1293	fi
1294
1295	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1296	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
1297	absnamein[$i]=$filename
1298	if (( maxcycle > 0 ))
1299	then
1300	if [[ "${actionin[$i]}" = di ]]
1301	then
1302	frelin[$i]=${endin[$i]}.$maxcycle
1303	else
1304	frelin[$i]=${afname}${endin[$i]}.$maxcycle
1305	fi
1306	else
1307	if [[ "${actionin[$i]}" = di ]]
1308	then
1309	frelin[$i]=${endin[$i]}
1310	else
1311	frelin[$i]=${afname}${endin[$i]}
1312	fi
1313	fi
1314
1315	fi
1316	done
1317
1318	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
1319	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
1320	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
1321	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
1322	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
1323	(( i = 0 ))
1324	while (( i < iout ))
1325	do
1326	(( i = i + 1 ))
1327	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
1328	then
1329	if [[ "${actionout[$i]}" = tr ]]
1330	then
1331	actionout[$i]=""
1332	elif [[ "${actionout[$i]}" = trpe ]]
1333	then
1334	actionout[$i]=pe
1335	elif [[ "${actionout[$i]}" = tra ]]
1336	then
1337	actionout[$i]=a
1338	fi
1339	(( maxcycle = 0 ))
1340	eval filename=${pathout[$i]}/${fname}${endout[$i]}
1341	eval catalogname=${pathout[$i]}
1342	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
1343	$(ls $filename* 2>&1 \| grep -c "nicht gefunden") = 1 \|\| \
1344	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
1345	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
1346	then
1347
1348	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
1349	if cat /dev/null > $filename
1350	then
1351	rm $filename
1352	else
1353
1354	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
1355	if [[ ! -d $catalogname ]]
1356	then
1357	if mkdir -p $catalogname
1358	then
1359	printf "\n\n *** directory:"
1360	printf "\n $catalogname"
1361	printf "\n was created\n"
1362	else
1363	printf "\n\n +++ OUTPUT-file:"
1364	printf "\n $filename"
1365	printf "\n cannot be created, because directory does not exist"
1366	printf "\n and cannot be created either"
1367	printf "\n"
1368	locat=output ; exit
1369	fi 2>/dev/null
1370	else
1371	printf "\n\n +++ OUTPUT-file:"
1372	printf "\n $filename"
1373	printf "\n cannot be created, although directory exists"
1374	printf "\n"
1375	locat=output ; exit
1376	fi
1377	fi 2>/dev/null
1378	else
1379
1380	# ZYKLUSNUMMER FESTSTELLEN
1381	ls -1 -d $filename > filelist 2>/dev/null
1382	ls -1 -d $filename.* >> filelist 2>/dev/null
1383	while read zeile
1384	do
1385	cycle=$(echo $zeile \| cut -f2 -d".")
1386	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
1387	then
1388	(( icycle = 1 ))
1389	else
1390	(( icycle = $cycle + 1 ))
1391	fi
1392	if (( icycle > maxcycle ))
1393	then
1394	(( maxcycle = icycle ))
1395	fi
1396	done <filelist
1397	rm filelist
1398	fi
1399
1400	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
1401	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
1402	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
1403	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
1404	if [[ "${actionout[$i]}" != a ]]
1405	then
1406	if (( maxcycle > 0 ))
1407	then
1408	filename=${filename}.$maxcycle
1409	if cat /dev/null > $filename
1410	then
1411	rm $filename
1412	else
1413	printf "\n +++ OUTPUT-file:"
1414	printf "\n $filename"
1415	printf "\n cannot be created"
1416	locat=output ; exit
1417	fi
1418	fi
1419	else
1420	(( maxcycle = maxcycle - 1 ))
1421	if (( maxcycle > 0 ))
1422	then
1423	filename=${filename}.$maxcycle
1424	fi
1425	fi
1426
1427	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
1428	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
1429	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
1430	pathout[$i]=$filename
1431	if (( maxcycle > 0 ))
1432	then
1433	frelout[$i]=${fname}${endout[$i]}.$maxcycle
1434	else
1435	frelout[$i]=${fname}${endout[$i]}
1436	fi
1437
1438	fi
1439	done
1440
1441
1442	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
1443	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
1444	then
1445	if [[ "$dvr_inc" = "" ]]
1446	then
1447	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
1448	printf "\n This is required for the dvrp_graphics package.\n"
1449	locat=dvr; exit
1450	fi
1451	if [[ "$dvr_lib" = "" ]]
1452	then
1453	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
1454	printf "\n This is required for the dvrp_graphics package.\n"
1455	locat=dvr; exit
1456	fi
1457	fi
1458
1459
1460	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
1461	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
1462	# UEBERSETZT ZU WERDEN)
1463	if [[ "$mainprog" = "" && "$executable" = "" ]]
1464	then
1465	printf "\n +++ neither main program nor executable defined"
1466	locat=source; exit
1467	elif [[ "$mainprog" != "" && "$executable" != "" ]]
1468	then
1469	printf "\n +++ main program as well as executable defined"
1470	locat=source; exit
1471	elif [[ "$mainprog" = "" && "$executable" != "" ]]
1472	then
1473	do_compile=false
1474	fi
1475
1476
1477	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
1478	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
1479	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
1480	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
1481	then
1482	rm -rf SOURCES_FOR_RUN_$fname
1483	mkdir SOURCES_FOR_RUN_$fname
1484	fi
1485
1486
1487	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
1488	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
1489	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
1490	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
1491	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
1492	then
1493
1494	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
1495
1496	if [[ "$source_list" = LOCALLY_MODIFIED ]]
1497	then
1498
1499	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
1500	source_list=""
1501	cd $source_path
1502
1503
1504	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
1505	if [[ ! -d .svn ]]
1506	then
1507	printf "\n\n +++ source directory"
1508	printf "\n \"$source_path\" "
1509	printf "\n is not under control of \"subversion\"."
1510	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
1511	fi
1512
1513
1514	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
1515	Filenames=""
1516	svn status > tmp_mrun
1517	while read line
1518	do
1519	firstc=`echo $line \| cut -c1`
1520	if [[ $firstc = M \|\| $firstc = "?" ]]
1521	then
1522	Name=`echo "$line" \| cut -c8-`
1523	extension=`echo $Name \| cut -d. -f2`
1524	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
1525	then
1526	Filenames="$Filenames "$Name
1527	fi
1528	fi
1529	done < tmp_mrun
1530
1531
1532	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1533	for dateiname in $Filenames
1534	do
1535	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
1536	source_list=$source_list"$dateiname "
1537	done
1538
1539	cd - > /dev/null
1540
1541
1542	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
1543	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
1544	# VORHANDEN
1545	elif [[ "$source_list" != "" && $restart_run != true ]]
1546	then
1547
1548	cd $source_path
1549
1550	for filename in $source_list
1551	do
1552
1553	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
1554	if [[ $(echo $filename \| grep -c "/") != 0 ]]
1555	then
1556	printf "\n +++ source code file: $filename"
1557	printf "\n must not contain (\"/\") "
1558	locat=source; exit
1559	fi
1560
1561	if [[ ! -f $filename ]]
1562	then
1563	printf "\n +++ source code file: $filename"
1564	printf "\n does not exist"
1565	locat=source; exit
1566	else
1567	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
1568	fi
1569
1570	done
1571
1572	cd - > /dev/null
1573
1574	fi
1575
1576
1577	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
1578	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
1579	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
1580	if [[ $restart_run != true ]]
1581	then
1582
1583	if [[ ! -f "$source_path/$mainprog" ]]
1584	then
1585	printf "\n\n +++ main program: $mainprog"
1586	printf "\n does not exist in source directory"
1587	printf "\n \"$source_path\"\n"
1588	locat=source; exit
1589	else
1590	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
1591	then
1592	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
1593	source_list=${mainprog}" $source_list"
1594	fi
1595	fi
1596	fi
1597
1598
1599	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1600	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1601	if [[ "$restart_run" != true ]]
1602	then
1603	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1604	if [[ ! -f $makefile ]]
1605	then
1606	printf "\n +++ file \"$makefile\" does not exist"
1607	locat=make; exit
1608	else
1609	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1610	fi
1611	fi
1612
1613
1614	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
1615	if [[ $restart_run != true && "$add_source_path" != "" ]]
1616	then
1617
1618	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
1619	if [[ ! -d $add_source_path ]]
1620	then
1621	printf "\n\n +++ WARNING: additional source code directory"
1622	printf "\n \"$add_source_path\" "
1623	printf "\n does not exist or is not a directory."
1624	printf "\n No source code will be used from this directory!\n"
1625	add_source_path=""
1626	if [[ $silent == false ]]
1627	then
1628	sleep 3
1629	fi
1630	else
1631
1632	cd $add_source_path
1633	found=false
1634
1635	Names=$(ls -1 *.f90 2>&1)
1636	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
1637	Names=$(ls -1 *.F90 2>&1)
1638	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
1639	Names=$(ls -1 *.F 2>&1)
1640	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
1641	Names=$(ls -1 *.f 2>&1)
1642	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
1643	Names=$(ls -1 *.c 2>&1)
1644	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
1645
1646	cd - > /dev/null
1647	cd SOURCES_FOR_RUN_$fname
1648
1649	# COPY MAKEFILE IF EXISTING
1650	if [[ -f $add_source_path/Makefile ]]
1651	then
1652	printf "\n\n *** user Makefile from directory"
1653	printf "\n \"$add_source_path\" is used \n"
1654	if [[ $silent == false ]]
1655	then
1656	sleep 1
1657	fi
1658	cp $add_source_path/Makefile .
1659	fi
1660
1661	for dateiname in $AddFilenames
1662	do
1663	if [[ -f $dateiname ]]
1664	then
1665	printf "\n +++ source code file \"$dateiname\" found in additional"
1666	printf "\n source code directory \"$add_source_path\" "
1667	printf "\n but was also given with option \"-s\" which means that it should be taken"
1668	printf "\n from directory \"$source_path\"."
1669	locat=source; exit
1670	fi
1671
1672	cp $add_source_path/$dateiname .
1673	source_list="$source_list $dateiname"
1674
1675	# CHECK IF FILE IS CONTAINED IN MAKEFILE
1676	if [[ $(grep -c $dateiname Makefile) = 0 ]]
1677	then
1678	printf "\n\n +++ user file \"$dateiname\" "
1679	printf "\n is not listed in Makefile \n"
1680	locat=source; exit
1681	else
1682
1683	# Default User-Interface von der Liste entfernen, falls Datei
1684	# ein User-Interface enthaelt
1685	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
1686	# then
1687	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
1688	# then
1689	# rm -rf user_interface.f90
1690	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
1691	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
1692	# printf "\n since a user-interface is found in file"
1693	# printf "\n \"$add_source_path/$dateiname\" \n"
1694	# sleep 3
1695	# else
1696	if [[ $found = false ]]
1697	then
1698	found=true
1699	printf "\n\n *** following user file(s) added to the"
1700	printf " files to be translated:\n "
1701	fi
1702	printf "$dateiname "
1703	if [[ $silent == false ]]
1704	then
1705	sleep 0.5
1706	fi
1707
1708	fi
1709	done
1710	[[ $found = true ]] && printf "\n"
1711	cd - > /dev/null
1712	fi
1713	fi
1714
1715
1716	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
1717	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
1718	if [[ $restart_run != true && -n $package_list ]]
1719	then
1720
1721	cd $source_path
1722
1723	for package in $package_list
1724	do
1725
1726	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
1727
1728	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
1729	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
1730	# LIEFERT
1731	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
1732
1733
1734	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
1735	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
1736	for source_list_name in $package_source_list
1737	do
1738	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
1739	then
1740
1741	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
1742	ending=`echo $source_list_name \| cut -f2 -d.`
1743	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
1744	then
1745	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
1746	source_list="$source_list $source_list_name"
1747	fi
1748	fi
1749	done
1750	done
1751
1752	cd - > /dev/null
1753	fi
1754
1755
1756	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
1757	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
1758	# if [[ "$restart_run" != true ]]
1759	# then
1760	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
1761	# if [[ ! -f $makefile ]]
1762	# then
1763	# printf "\n +++ file \"$makefile\" does not exist"
1764	# locat=make; exit
1765	# else
1766	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
1767	# fi
1768	# fi
1769
1770	fi # do_compile=true
1771
1772
1773	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
1774	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
1775	if [[ $do_compile = true \|\| $create_executable_for_batch = true ]]
1776	then
1777
1778	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
1779	# ZUSAMMENSETZEN
1780	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
1781	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1782	then
1783	cpp_options="${cpp_options},-D__ibm=__ibm"
1784	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
1785	then
1786	cpp_options="$cpp_options -D__nec"
1787	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
1788	then
1789	cpp_options="$cpp_options -D__lc"
1790	else
1791	cpp_options="$cpp_options -D__$localhost"
1792	fi
1793
1794	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
1795	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1796	then
1797	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
1798	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
1799	else
1800	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
1801	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
1802	fi
1803
1804	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
1805	if [[ -n $package_list ]]
1806	then
1807	for package in $package_list
1808	do
1809	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1810	then
1811	if [[ $package != "dvrp_graphics+1PE" ]]
1812	then
1813	cpp_options="${cpp_options},-D__$package=__$package"
1814	else
1815	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
1816	export use_seperate_pe_for_dvrp_output=true
1817	fi
1818	else
1819	if [[ $package != "dvrp_graphics+1PE" ]]
1820	then
1821	cpp_options="$cpp_options -D__$package"
1822	else
1823	cpp_options="$cpp_options -D__dvrp_graphics"
1824	export use_seperate_pe_for_dvrp_output=true
1825	fi
1826	fi
1827	done
1828	fi
1829
1830	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
1831	if [[ -n $cpp_opts ]]
1832	then
1833	for popts in $cpp_opts
1834	do
1835	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
1836	then
1837	cpp_options="${cpp_options},-D__$popts=__$popts"
1838	else
1839	cpp_options="$cpp_options -D__$popts"
1840	fi
1841	done
1842	fi
1843
1844	else
1845
1846
1847	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
1848	if [[ $do_remote = false ]]
1849	then
1850	if [[ ! -f $executable ]]
1851	then
1852	printf "\n +++ executable file: $executable"
1853	printf "\n does not exist"
1854	locat=executable; exit
1855	fi
1856	fi
1857	fi
1858
1859
1860	# JOBMODUS FESTSTELLEN
1861	if [[ "$ENVIRONMENT" = BATCH ]]
1862	then
1863	jobmo=BATCH
1864	else
1865	jobmo=INTERACTIVE
1866	fi
1867
1868
1869	# no interactive runs on lctit
1870	if [[ $host = lctit && $jobmo = INTERACTIVE && $do_batch = false ]]
1871	then
1872	printf "\n +++ no interactive runs allowed on host \"$host\" "
1873	printf "\n please submit batch job using mrun option \"-b\" \n"
1874	locat=normal; exit
1875	fi
1876
1877
1878	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
1879	# DURCH BENUTZER ANDERWEITIG VEREINBART
1880	if [[ "$compiler_name" = "" ]]
1881	then
1882
1883	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
1884	locat=compiler_name; exit
1885
1886	fi
1887
1888
1889	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
1890	[[ $localhost = necriam ]] && compiler_name=mpif90
1891
1892
1893
1894	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
1895	kennung=$RANDOM
1896	if [[ "$tmp_user_catalog" = "" ]]
1897	then
1898	if [[ $localhost = ibmh ]]
1899	then
1900	tmp_user_catalog=$SCRATCH
1901	elif [[ $localhost = nech ]]
1902	then
1903	tmp_user_catalog=$WRKSHR
1904	else
1905	tmp_user_catalog=/tmp
1906	fi
1907	fi
1908	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
1909
1910
1911	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
1912	# BESTIMMEN
1913	if [[ "$tmp_data_catalog" = "" ]]
1914	then
1915	if [[ $localhost = nech ]]
1916	then
1917	tmp_data_catalog=$WRKSHR/mrun_restart_data
1918	else
1919	tmp_data_catalog=/tmp/mrun_restart_data
1920	fi
1921	fi
1922
1923
1924	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
1925	# ERSETZEN
1926	if [[ $do_remote = false && $do_compile = true \|\| $create_executable_for_batch = true ]]
1927	then
1928	eval fopts=\"$fopts\"
1929	eval lopts=\"$lopts\"
1930	fi
1931
1932
1933
1934	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
1935	fopts="$fopts $netcdf_inc $fftw_inc $dvr_inc"
1936	lopts="$lopts $netcdf_lib $fftw_lib $dvr_lib"
1937	ROPTS="$ropts"
1938	# if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lckyoto \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcflow \|\| $host = lcxe6 \|\| $host = lcxt5m \|\| $host = lck \|\| $host = lckiaps \|\| $host = lckordi \|\| $host = lcsb \|\| $host ) && -n $numprocs ]]
1939	# then
1940	XOPT="-X $numprocs"
1941	# fi
1942
1943
1944
1945	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
1946	# GRAMM BENOETIGT
1947	done=false
1948	while [[ $done = false ]]
1949	do
1950	cputime=$cpumax
1951	if (( $cputime == 0 ))
1952	then
1953	if [[ $do_batch = true ]]
1954	then
1955	printf "\n +++ cpu-time is undefined"
1956	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
1957	printf "\n >>> "
1958	read cputime 1>/dev/null 2>&1
1959	else
1960	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
1961	fi
1962	else
1963	done=true
1964	fi
1965	cpumax=$cputime
1966	done
1967
1968	(( minuten = cputime / 60 ))
1969	(( sekunden = cputime - minuten * 60 ))
1970
1971
1972	# PRUEFEN DER KERNSPEICHERANFORDERUNG
1973	if [[ $do_batch = true ]]
1974	then
1975	done=false
1976	while [[ $done = false ]]
1977	do
1978	if (( memory == 0 ))
1979	then
1980	printf "\n +++ memory demand is undefined"
1981	printf "\n >>> Please type memory in MByte per process as INTEGER:"
1982	printf "\n >>> "
1983	read memory 1>/dev/null 2>&1
1984	else
1985	done=true
1986	fi
1987	done
1988	fi
1989
1990
1991	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
1992	if [[ $do_remote = true && -z $remote_username ]]
1993	then
1994	while [[ -z $remote_username ]]
1995	do
1996	printf "\n +++ username on remote host \"$host\" is undefined"
1997	printf "\n >>> Please type username:"
1998	printf "\n >>> "
1999	read remote_username
2000	done
2001	mc="$mc -u$remote_username"
2002	fi
2003
2004	# CHECK FOR INITIAL COMMANDS AFTER LOGIN
2005	if [[ "$login_init_cmd" != "" ]]
2006	then
2007	export init_cmds="${login_init_cmd};"
2008	fi
2009
2010
2011	# set module load command and export for subjob
2012	if [[ "$modules" != "" ]]
2013	then
2014	if [[ $host = lctit ]]
2015	then
2016	export module_calls=". $modules"
2017	else
2018	export module_calls="module load ${modules};"
2019	fi
2020	fi
2021
2022	# bugfix for wrong netcdf module and for netCDF4 usage in case of mpt
2023	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2024	then
2025	if [[ $(echo $module_calls \| grep -c netcdf/3.6.3-intel) != 0 ]]
2026	then
2027	export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/dataformats/netcdf/3.6.3-intel/lib:\$LD_LIBRARY_PATH;"
2028	fi
2029	# if [[ $(echo $module_calls \| grep -c mpt) != 0 ]]
2030	# then
2031	# export module_calls="$module_calls export LD_LIBRARY_PATH=/sw/sgi/mpt/2011-02-07/lib:\$LD_LIBRARY_PATH;"
2032	# echo "*** module_calls = $module_calls"
2033	# fi
2034	fi
2035
2036
2037	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
2038	if [[ $host = lcsgib \|\| $host = lcsgih ]]
2039	then
2040	if [[ $(echo $modules \| grep -c mpt ) != 0 ]]
2041	then
2042	mpilib=mpt
2043	elif [[ $(echo $modules \| grep -c mvapich ) != 0 ]]
2044	then
2045	mpilib=mvapich
2046	elif [[ $(echo $modules \| grep -c impi ) != 0 ]]
2047	then
2048	mpilib=impi
2049	fi
2050	fi
2051
2052
2053
2054	###########################################################################
2055	# HEADER-AUSGABE
2056	###########################################################################
2057
2058
2059	calltime=$(date)
2060	printf "\n"
2061	# [[ $silent = false ]] && clear
2062	printf "#------------------------------------------------------------------------# \n"
2063	printf "\| %-35s%35s \| \n" "$version" "$calltime"
2064	printf "\| \| \n"
2065	spalte1="called on:"; spalte2=$localhost_realname
2066	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2067	if [[ $local_compile = false ]]
2068	then
2069	if [[ $do_remote = true ]]
2070	then
2071	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
2072	else
2073	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
2074	fi
2075	else
2076	spalte1="compiling test only!"; spalte2=""
2077	fi
2078	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2079	if [[ -n $numprocs ]]
2080	then
2081	if [[ $run_coupled_model = false ]]
2082	then
2083	spalte1="number of PEs:"; spalte2=$numprocs
2084	else
2085	spalte1="number of PEs:"; spalte2="$numprocs (atmosphere: $numprocs_atmos, ocean: $numprocs_ocean)"
2086	fi
2087	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2088	fi
2089	if [[ -n $tasks_per_node ]]
2090	then
2091	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
2092	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2093	fi
2094	if [[ $maximum_parallel_io_streams != $numprocs ]]
2095	then
2096	spalte1="max par io streams:"; spalte2="$maximum_parallel_io_streams"
2097	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2098	fi
2099	if [[ $use_openmp = true ]]
2100	then
2101	spalte1="threads per task:"; spalte2="$threads_per_task"
2102	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2103	fi
2104	printf "\| \| \n"
2105	if [[ $do_compile = true ]]
2106	then
2107	if [[ "$mopts" != "" ]]
2108	then
2109	spalte1="make options:"; spalte2=$(echo "$mopts" \| cut -c-45)
2110	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2111	zeile=$(echo "$mopts" \| cut -c46-)
2112	while [[ "$zeile" != "" ]]
2113	do
2114	spalte1=""
2115	spalte2=$(echo "$zeile" \| cut -c-45)
2116	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2117	zeile=$(echo "$zeile" \| cut -c46-)
2118	done
2119	fi
2120
2121	spalte1="cpp directives:"; spalte2=$(echo "$cpp_options" \| cut -c-45)
2122	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2123	zeile=$(echo "$cpp_options" \| cut -c46-)
2124	while [[ "$zeile" != "" ]]
2125	do
2126	spalte1=""
2127	spalte2=$(echo "$zeile" \| cut -c-45)
2128	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2129	zeile=$(echo "$zeile" \| cut -c46-)
2130	done
2131
2132	spalte1="compiler options:"; spalte2=$(echo "$fopts" \| cut -c-45)
2133	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2134	zeile=$(echo "$fopts" \| cut -c46-)
2135	while [[ "$zeile" != "" ]]
2136	do
2137	spalte1=""
2138	spalte2=$(echo "$zeile" \| cut -c-45)
2139	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2140	zeile=$(echo "$zeile" \| cut -c46-)
2141	done
2142
2143	spalte1="linker options:"; spalte2=$(echo "$lopts" \| cut -c-45)
2144	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2145	zeile=$(echo "$lopts" \| cut -c46-)
2146	while [[ "$zeile" != "" ]]
2147	do
2148	spalte1=""
2149	spalte2=$(echo "$zeile" \| cut -c-45)
2150	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2151	zeile=$(echo "$zeile" \| cut -c46-)
2152	done
2153
2154	spalte1="modules to be load:"; spalte2=$(echo "$modules" \| cut -c-45)
2155	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2156	zeile=$(echo "$modules" \| cut -c46-)
2157	while [[ "$zeile" != "" ]]
2158	do
2159	spalte1=""
2160	spalte2=$(echo "$zeile" \| cut -c-45)
2161	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2162	zeile=$(echo "$zeile" \| cut -c46-)
2163	done
2164
2165	spalte1="main program:"; spalte2=$mainprog
2166	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2167	else
2168	spalte1=executable:; spalte2=$executable
2169	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2170	fi
2171	printf "\| \| \n"
2172	spalte1="base name of files:"; spalte2=$fname
2173	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2174	if [[ $fname != $afname ]]
2175	then
2176	spalte1="base name of input files:"; spalte2=$afname
2177	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2178	fi
2179	spalte1="INPUT control list:"; spalte2=$(echo $input_list)
2180	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2181	spalte1="OUTPUT control list:"; spalte2=$(echo $output_list)
2182	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2183
2184	if [[ "$ocean_file_appendix" = true ]]
2185	then
2186	printf "\| %-35s%-35s \| \n" "suffix \"_O\" is added to local files" " "
2187	fi
2188
2189	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
2190	then
2191	spalte1="memory demand / PE":; spalte2="$memory MB"
2192	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2193	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
2194	printf "\| %-25s%-45s \| \n" "$spalte1" "$spalte2"
2195	fi
2196
2197	if [[ $do_compile = true ]]
2198	then
2199	printf "\| \| \n"
2200	printf "\| Files to be compiled: \| \n"
2201	zeile=$source_list
2202	while [[ "$zeile" != "" ]]
2203	do
2204	linestart=$(echo $zeile \| cut -c-70)
2205	printf "\| %-70s \| \n" "$linestart"
2206	zeile=$(echo "$zeile" \| cut -c71-)
2207	done
2208	fi
2209	printf "#------------------------------------------------------------------------#"
2210
2211
2212
2213	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
2214	if [[ $do_trace = true ]]
2215	then
2216	(( i = 0 ))
2217	while (( i < iin ))
2218	do
2219	(( i = i + 1 ))
2220	if (( i == 1 ))
2221	then
2222	printf "\n\n >>> INPUT-file assignments:\n"
2223	fi
2224	printf "\n ${localin[$i]} : ${absnamein[$i]}"
2225	done
2226	(( i = 0 ))
2227	while (( i < iout ))
2228	do
2229	(( i = i + 1 ))
2230	if (( i == 1 ))
2231	then
2232	printf "\n\n >>> OUTPUT-file assignments:\n"
2233	fi
2234	printf "\n ${localout[$i]} : ${pathout[$i]}"
2235	done
2236	(( i = 0 ))
2237	while (( i < iic ))
2238	do
2239	(( i = i + 1 ))
2240	if (( i == 1 ))
2241	then
2242	printf "\n\n >>> INPUT-commands:\n"
2243	fi
2244	printf "\n ${in_command[$i]}"
2245	done
2246	(( i = 0 ))
2247	while (( i < ioc ))
2248	do
2249	(( i = i + 1 ))
2250	if (( i == 1 ))
2251	then
2252	printf "\n\n >>> OUTPUT-commands:\n"
2253	fi
2254	printf "\n ${out_command[$i]}"
2255	done
2256	fi
2257
2258
2259	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
2260	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
2261	then
2262	antwort=dummy
2263	printf "\n\n"
2264	printf " >>> everything o.k. (y/n) ? "
2265	while read antwort
2266	do
2267	if [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
2268	then
2269	printf " >>> everything o.k. (y/n) ? "
2270	else
2271	break
2272	fi
2273	done
2274	if [[ $antwort = n \|\| $antwort = N ]]
2275	then
2276	locat=user_abort; (( iec = 0 )); exit
2277	fi
2278	if [[ $do_batch = true ]]
2279	then
2280	printf " >>> batch-job will be created and submitted"
2281	else
2282	if [[ $local_compile = false ]]
2283	then
2284	printf " >>> MRUN will now continue to execute on this machine"
2285	else
2286	printf " >>> a test compilation will now be carried out on this machine"
2287	fi
2288	fi
2289	fi
2290
2291
2292	# PERFORM PARAMETER FILE CHECK (COUPLED RUNS ARE NOT SUPPORTED YET)
2293	# DEFINE VARIABLES FOR FREQUENTLY USED DIRECTORIES
2294	check_depository="${working_directory}/trunk/UTIL"
2295	check_sources="${working_directory}/tmp_check_namelist_files"
2296	skip_check=false
2297
2298	# CHECK IF NAMELIST_FILE_CHECK HAS BEEN COMPILED SUCCESSFULLY
2299	if [[ ! -f $check_depository/check_namelist_files.tar ]]
2300	then
2301	skip_check=true
2302	reason="run on remote host or parameter file check has not been compiled."
2303	fi
2304	if [[ ! -f $PALM_BIN/check_namelist_files.x ]]
2305	then
2306	skip_check=true
2307	reason="parameter file check has not been compiled."
2308	fi
2309
2310	# CHECK FOR PARALLEL RUN; OTHERWISE SKIP CHECK
2311	if [[ "$cond1" != "parallel" && "$cond2" != "parallel" ]]
2312	then
2313	skip_check=true
2314	reason="serial run."
2315	fi
2316
2317	# ONLY PERFORM CHECK IF -z OPTION IS NOT SET, NO RESTART RUN IS CARRIED OUT
2318	# AND IF THE EXECUTION HOST IS THE LOCAL HOST
2319	# ATTENTION: THIS ROUTINE DOES NOT WORK IF THE COMPILER ON THE LOCAL HOST
2320	# DIFFERS FROM THE COMPILER ON THE REMOTE HOST
2321	if [[ $check_namelist_files == false ]]
2322	then
2323	skip_check=true
2324	reason="-z option set."
2325	fi
2326
2327	if [[ $fromhost != $localhost ]]
2328	then
2329	skip_check=true
2330	reason="submitting host is local host."
2331	fi
2332
2333	if [[ $run_coupled_model == true ]]
2334	then
2335	skip_check=true
2336	reason="coupled run."
2337	fi
2338
2339	if [[ $restart_run == true ]]
2340	then
2341	skip_check=true
2342	reason="restart run."
2343	fi
2344
2345	# SKIP CHECK IN CASE OF RESTART RUN: CHECK WHETHER THE LAST CHAR IS "f" IN PARIN
2346	(( last_char_int = `echo $filename_input \| wc -c` - 1 ))
2347	last_char=`echo $filename_input \| cut -c $last_char_int`
2348	if [[ "$last_char" == "f" ]]
2349	then
2350	skip_check=true
2351	reason="restart run."
2352	fi
2353
2354	if [[ $skip_check == false ]]
2355	then
2356	tmp_check=${working_directory}/tmp_check
2357
2358	# GET TOPOGRAPHY PARAMETER FILE SUFFIX (USUALLY "_TOPO"). THIS FILE IS
2359	# NOT NECESSARILY REQUIRED
2360	line=""
2361	found=false
2362	grep "TOPOGRAPHY_DATA" $config_file > $tmp_check
2363	while read line1
2364	do
2365	line="$line1"
2366	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2367	then
2368	topo_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2369	found=true
2370	fi
2371	done < $tmp_check
2372
2373	if [[ $found = false ]]
2374	then
2375	printf "\n +++ no TOPOGRAPHY list entry found in the configuration file."
2376	fi
2377
2378	# GET NUDGING PARAMETER FILE SUFFIX (USUALLY "_NUDGE"). THIS FILE IS
2379	# NOT NECESSARILY REQUIRED
2380	line=""
2381	found=false
2382	grep "NUDGING_DATA" $config_file > $tmp_check
2383	while read line1
2384	do
2385	line="$line1"
2386	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2387	then
2388	nudge_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2389	found=true
2390	fi
2391	done < $tmp_check
2392
2393	if [[ $found = false ]]
2394	then
2395	printf "\n +++ no NUDGING list entry found in the configuration file."
2396	fi
2397
2398	# GET LARGE SCALE FORCING PARAMETER FILE SUFFIX (USUALLY "_LSF"). THIS FILE IS
2399	# NOT NECESSARILY REQUIRED
2400	line=""
2401	found=false
2402	grep "LSF_DATA" $config_file > $tmp_check
2403	while read line1
2404	do
2405	line="$line1"
2406	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2407	then
2408	lsf_suffix=`echo $line \| tr -s " " \| cut -d" " -s -f5`
2409	found=true
2410	fi
2411	done < $tmp_check
2412
2413	if [[ $found = false ]]
2414	then
2415	printf "\n +++ no LSF list entry found in the configuration file."
2416	fi
2417
2418	rm -rf ${working_directory}/tmp_check
2419
2420	# CHECK IF THE P3DF FILE MUST BE CHECKED
2421	for item in $input_list
2422	do
2423	if [[ "$item" == "restart" ]]
2424	then
2425	check_restart=1
2426	else
2427	check_restart=0
2428	fi
2429	done
2430
2431	# ERROR IF NO PARAMETER FILE WAS FOUND, OTHERWISE PROCEED
2432	if [[ (! -f $filename_input) && ( "$filename_input" != "" ) ]]
2433	then
2434	printf "\n\n +++ ERROR: parameter file ($filename_input) not found."
2435	locat=check_namelist; exit
2436	fi
2437
2438	# CHECK IF THE RESTART PARAMETER FILE EXISTS (IF NECESSARY)
2439	if [[ $check_restart == 1 ]]
2440	then
2441
2442	filenamef="${filename_input}f"
2443	if [[ ! -f $filenamef ]]
2444	then
2445	printf "\n\n +++ WARNING: restart parameter file ($filenamef) is missing."
2446	check_restart=0
2447	answer=dummy
2448	printf "\n\n"
2449
2450	if [[ $silent == false ]]
2451	then
2452	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2453	do
2454	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2455	read answer
2456	done
2457	if [[ $answer = a \|\| $answer = A ]]
2458	then
2459	printf "\n +++ Aborting...."
2460	locat=normal; exit
2461	fi
2462	fi
2463	else
2464	check_restart=1
2465	fi
2466	fi
2467
2468	# CREATE TEMPORARY SOURCES_FOR_CHECK PATH
2469	mkdir $check_sources
2470	cd $check_sources
2471
2472
2473	# CHECK FOR USER CODE, OTHERWISE USE THE PRECOMPILED CHECK_NAMELIST_FILES.X
2474	if [[ -d $add_source_path ]]
2475	then
2476	printf "\n\n *** copying files from $check_depository"
2477	cp $check_depository/check_namelist_files.tar ./
2478
2479	printf "\n\n *** untar of makefile and source files in $check_sources"
2480	tar -xf check_namelist_files.tar > /dev/null 2>&1
2481
2482	printf "\n\n *** adding user code."
2483	cp $add_source_path/* ./
2484	touch check_namelist_files.f90
2485
2486	# GET COMPILER OPTIONS AND PERFORM MAKE
2487	printf "\n\n *** compiling code if necessary...\n"
2488
2489	# workaround for batch jobs on local machine (lcxe6)
2490	if [[ $do_batch == true && $do_remote == false ]]
2491	then
2492	eval $init_cmds
2493	fi
2494
2495	# GET CHECK OPTIONS
2496	line=""
2497	found=false
2498
2499	grep "$localhost" ${base_directory}/${config_file} \| grep "%cpp_options" > $tmp_check
2500
2501	while read line1
2502	do
2503
2504	if [[ $(echo $line1 \| cut -d" " -s -f3-) = "$localhost" ]]
2505	then
2506	line="$line1"
2507	fi
2508
2509	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2510	then
2511	# EVENTUELLE DOPPELPUNKTE AUS OPTIONSSTRING UND ALLE -D ENTFERNEN
2512	line="$line "
2513	copts_check=`echo $line \| cut -d" " -s -f2 \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g' \| sed 's/-D[^ ]* //g' \| sed 's/ -D.*//g'`
2514	found=true
2515	fi
2516
2517	done < $tmp_check
2518	copts_check="$copts_check -D__check -D__parallel"
2519
2520	make -f Makefile_check F90=$compiler_name_ser COPT="$copts_check"
2521
2522	# GET MAKE OUTPUT
2523	if [[ $? != 0 ]]
2524	then
2525	printf "\n +++ error during make."
2526	answer=dummy
2527	printf "\n\n"
2528	if [[ $silent == false ]]
2529	then
2530	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2531	do
2532	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2533	read answer
2534	done
2535	if [[ $answer = a \|\| $answer = A ]]
2536	then
2537	printf "\n +++ Aborting..."
2538	rm -rf $check_sources
2539	locat=normal; exit
2540	else
2541	skip_check=true
2542	fi
2543	else
2544	skip_check=true
2545	fi
2546	fi
2547	else
2548	cp $PALM_BIN/check_namelist_files.x ./
2549	fi
2550
2551	cp $filename_input ./PARIN
2552	if [[ $check_restart == 1 ]]
2553	then
2554	cp $filenamef ./PARINF
2555	fi
2556
2557	if [[ -f ${pathname}/${fname}${topo_suffix} && $skip_check == false ]]
2558	then
2559	printf "\n *** adding topography data"
2560	cp ${pathname}/${fname}${topo_suffix} ./TOPOGRAPHY_DATA
2561
2562	# IN CASE OF TOPOGRAPHY AND HIGH GRID POINT NUMBERS, THE STACK SIZE
2563	# MUST BE INCREASED. THIS IS DUE TO THE ARRAY nzb_local AND topo_height,
2564	# WHICH REQUIRE SUFFICIENT MEMORY
2565	ulimit -s unlimited
2566	fi
2567
2568	if [[ -f ${pathname}/${fname}${nudge_suffix} && $skip_check == false ]]
2569	then
2570	printf "\n *** adding nudging data"
2571	cp ${pathname}/${fname}${nudge_suffix} ./NUDGING_DATA
2572	fi
2573
2574	if [[ -f ${pathname}/${fname}${lsf_suffix} && $skip_check == false ]]
2575	then
2576	printf "\n *** adding large scale forcing data"
2577	cp ${pathname}/${fname}${lsf_suffix} ./LSF_DATA
2578	fi
2579
2580	# CREATE ENVPAR FILE, WHICH IS NEEDED BY CHECK_NAMELIST_FILES.X
2581	cat > ENVPAR << %%END%%
2582	&envpar run_identifier = '$fname', host = '$host',
2583	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
2584	maximum_parallel_io_streams = $maximum_parallel_io_streams,
2585	maximum_cpu_time_allowed = ${cpumax}.,
2586	revision = '$global_revision',
2587	local_dvrserver_running = $local_dvrserver_running /
2588
2589	%%END%%
2590
2591	# SAFETY CHECK: ONLY PROCEED IF THE PARAMETER CHECK PROGRAM WAS PROPERLY COMPILED
2592	if [[ ! -f check_namelist_files.x && $skip_check == false ]]
2593	then
2594	printf "\n +++ WARNING: check_namelist_files.x not found."
2595	answer=dummy
2596	printf "\n\n"
2597
2598	if [[ $silent == false ]]
2599	then
2600	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2601	do
2602	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2603	read answer
2604	done
2605	if [[ $answer = a \|\| $answer = A ]]
2606	then
2607	printf "\n +++ Aborting..."
2608	rm -rf $check_sources
2609	locat=normal; exit
2610	else
2611	printf "\n *** skipping parameter file check."
2612	fi
2613	fi
2614
2615	elif [[ $skip_check == false ]]
2616	then
2617	# STARTING THE PARAMETER FILE CHECK
2618	printf "\n\n *** starting parameter file check..."
2619
2620	# CHECKING THE P3D FILE
2621	printf "\n\n (1) checking $filename_input"
2622	echo "$numprocs 0 0" > VARIN
2623	errors=`./check_namelist_files.x < VARIN 2>&1`
2624
2625	check_error=false
2626	if [[ "$errors" == "" ]]
2627	then
2628	printf " --> o.k."
2629	else
2630	printf " --> failed."
2631	check_error=true
2632	printf "\n\n $errors"
2633	fi
2634
2635	# CHECKING THE PD3F FILE IF NECESSARY
2636	if [[ $check_restart == 1 && $check_error == false ]]
2637	then
2638	printf "\n\n (2) checking $filenamef"
2639
2640	# FIRST CHECK IF INITIALIZING_ACTIONS="READ_RESTART_DATA" IS SET
2641	# IN &INIPAR LIST
2642	found=false
2643	cat PARINF \| while read line
2644	do
2645	line=$(echo $line\|sed 's/ //g')
2646	if [[ $line == "&inipar" ]]
2647	then
2648	start_search=true
2649	fi
2650
2651	if [[ $start_search == true ]]
2652	then
2653	if [[ $line == "initializing_actions='read_restart_data'" ]]
2654	then
2655	found=true
2656	break
2657	fi
2658	fi
2659
2660	if [[ $line == "/" ]]
2661	then
2662	start_search=false
2663	fi
2664
2665	done
2666
2667	if [[ $found = false ]]
2668	then
2669	printf "\n\n +++ ERROR: initializing_actions = 'read_restart_data' not found"
2670	printf "\n in &inipar list in $fname$p3df_suffix."
2671	rm -rf $check_sources
2672	locat=check_namelist; exit
2673	fi
2674
2675	# READ max_user_pr FROM FILES
2676	if [[ -f parin_for_check ]]
2677	then
2678	read max_pr_user < parin_for_check
2679	else
2680	max_user_pr=0
2681	fi
2682
2683	echo "$numprocs 1 $max_pr_user" > VARIN
2684	errors=`./check_namelist_files.x < VARIN 2>&1`
2685
2686	if [[ "$errors" == "" ]]
2687	then
2688	printf " --> o.k."
2689	else
2690	printf " --> failed."
2691	check_error=true
2692	printf "\n\n $errors"
2693	fi
2694	fi
2695
2696	# REPORT ERRORS AND CONTINUE/EXIT
2697	if [[ $check_error == true ]]
2698	then
2699	printf "\n +++ errors found in the parameter file!\n"
2700	answer=dummy
2701	printf "\n\n"
2702
2703	while [[ "$answer" != c && "$answer" != C && "$answer" != a && "$answer" != A ]]
2704	do
2705	printf " >>> continue anyway (c(ontinue)/a(bort)) ? "
2706	read answer
2707	done
2708
2709	if [[ $answer = a \|\| $answer = A ]]
2710	then
2711	printf "\n +++ Aborting..."
2712	rm -rf $check_sources
2713	locat=normal; exit
2714	fi
2715	else
2716	printf "\n\n *** parameter file(s) seem(s) to be o.k.\n"
2717	fi
2718	rm -rf $check_sources
2719	fi
2720	else
2721	printf "\n\n +++ skipping parameter file check due to following reason: $reason \n"
2722	fi
2723
2724	# DELETE TEMPORARY DIRECTORY AND FINISH NAMELIST FILE CHECK
2725	rm -rf $check_sources
2726	cd $working_directory
2727
2728
2729	# DETERMINE PATH FOR MAKE DEPOSITORY
2730	if [[ $do_batch = false \|\| $create_executable_for_batch = true ]]
2731	then
2732
2733	line=""
2734	grep "%depository_path" $config_file > tmp_mrun
2735	while read line
2736	do
2737	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2738	then
2739	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
2740	then
2741	global_depository_path=`echo $line \| cut -d" " -s -f2`
2742	fi
2743	fi
2744	done < tmp_mrun
2745
2746	line=""
2747	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
2748	while read line
2749	do
2750	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
2751	then
2752	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
2753	then
2754	local_depository_path=`echo $line \| cut -d" " -s -f2`
2755	fi
2756	fi
2757	done < tmp_mrun
2758
2759	if [[ "$local_depository_path" = "" ]]
2760	then
2761	if [[ "$global_depository_path" != "" ]]
2762	then
2763	local_depository_path=$global_depository_path
2764	else
2765	printf "\n\n +++ no depository path found in configuration file"
2766	printf "\n for local host \"$localhost\" "
2767	printf "\n please set \"\%depository_path\" in configuration file\n"
2768	locat=config_file; exit
2769	fi
2770	fi
2771	eval local_depository_path=$local_depository_path
2772	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
2773	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
2774
2775
2776	basename=`echo $mainprog \| cut -f1 -d"."`
2777	eval make_depository=${local_depository_path}/${basename}_current_version.tar
2778	if [[ ! -f $make_depository ]]
2779	then
2780	printf "\n"
2781	printf "\n *** WARNING: make depository \"$make_depository\" not found"
2782	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
2783	fi
2784
2785	fi
2786
2787
2788	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
2789	# CHENDE AKTIONEN DURCHGEFUEHRT
2790	if [[ $do_batch = false ]]
2791	then
2792
2793
2794	# TEMPORAEREN KATALOG ERZEUGEN
2795	mkdir -p $TEMPDIR
2796	chmod go+rx $TEMPDIR
2797	tmpcreate=true
2798
2799
2800	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
2801	# TEMPORAERES VERZEICHNIS KOPIEREN
2802	if [[ $do_compile = true ]]
2803	then
2804
2805	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
2806	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
2807	if [[ $localhost = nech ]]
2808	then
2809	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
2810	if mkdir -p $TEMPDIR_COMPILE
2811	then
2812	printf "\n *** \"$TEMPDIR_COMPILE\" "
2813	printf "\n is generated as temporary directory for cross compiling\n"
2814	else
2815	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
2816	printf "\n needed for cross compilation failed"
2817	locat=compile
2818	exit
2819	fi
2820	else
2821	TEMPDIR_COMPILE=$TEMPDIR
2822	fi
2823
2824	cp $make_depository $TEMPDIR_COMPILE
2825	cd $TEMPDIR_COMPILE
2826	tar -xf $make_depository > /dev/null 2>&1
2827	cd - > /dev/null
2828
2829	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
2830
2831	else
2832
2833	cp $executable ${TEMPDIR}/a.out
2834
2835	fi
2836
2837
2838	# WECHSEL IN TEMPORAEREN KATALOG
2839	cd $TEMPDIR
2840	printf "\n *** changed to temporary directory: $TEMPDIR"
2841
2842
2843	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
2844	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
2845	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
2846	# ERMITTELN
2847	(( i = 0 ))
2848	while (( i < iout ))
2849	do
2850	(( i = i + 1 ))
2851	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
2852	then
2853	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2854	else
2855	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
2856	fi
2857	done
2858
2859
2860	# IF REQUIRED, START WITH COMPILING ACTIONS
2861	if [[ $do_compile = true ]]
2862	then
2863
2864
2865	if [[ -f a.out ]]
2866	then
2867
2868	# EXECUTABLE WAS CREATED DURING INTERACTIVE CALL OF MRUN
2869	printf "\n\n\n *** executable a.out found"
2870	printf "\n no compilation required \n"
2871
2872	else
2873
2874	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
2875	printf "\n\n\n *** compilation starts \n$striche\n"
2876	printf " *** compilation with make using following options:\n"
2877	printf " make depository: $make_depository"
2878	if [[ "$mopts" != "" ]]
2879	then
2880	printf " make options: $mopts\n"
2881	fi
2882	printf " compilername: $compiler_name\n"
2883	printf " compiler options: $fopts\n"
2884	printf " preprocessor directives: $cpp_options \n"
2885	printf " linker options: $lopts \n"
2886	if [[ "$modules" != "" ]]
2887	then
2888	printf " modules to be load: $modules \n"
2889	fi
2890	printf " source code files: $source_list \n"
2891
2892	if [[ $localhost = nech ]]
2893	then
2894	ssh $SSH_PORTOPT 136.172.44.192 -l $usern "$init_cmds $module_calls cd \$HOME/work/${usern}.$kennung; sxmake $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2895	cp $TEMPDIR_COMPILE/a.out .
2896	[[ $? != 0 ]] && compile_error=true
2897	rm -rf $TEMPDIR_COMPILE
2898	elif [[ $localhost = ibmh ]]
2899	then
2900	printf " compiler is called via ssh on \"plogin1\" \n"
2901	ssh $SSH_PORTOPT plogin1 -l $usern "$init_cmds export PATH=/sw/ibm/xlf/13.1.0.8/usr/bin:$PATH; $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2902	[[ ! -f a.out ]] && compile_error=true
2903	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2904	elif [[ $localhost = lcsgib ]]
2905	then
2906	printf " compiler is called via ssh on \"bicegate0\" \n"
2907	ssh $SSH_PORTOPT bicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2908	[[ ! -f a.out ]] && compile_error=true
2909	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2910	elif [[ $localhost = lcsgih ]]
2911	then
2912	printf " compiler is called via ssh on \"hicegate0\" \n"
2913	ssh $SSH_PORTOPT hicegate0 -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
2914	[[ ! -f a.out ]] && compile_error=true
2915	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2916	elif [[ $localhost = lcflow ]]
2917	then
2918	printf " compiler is called via ssh on \"flow\" \n"
2919	/usr/bin/ssh $SSH_PORTOPT flow02.hpc.uni-oldenburg.de -l $usern "$init_cmds $module_calls cd $TEMPDIR; make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
2920	[[ ! -f a.out ]] && compile_error=true
2921	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
2922	elif [[ $localhost = lccrayf ]]
2923	then
2924	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2925	else
2926	[[ "$init_cmds" != "" ]] && eval $init_cmds
2927	[[ "$module_calls" != "" ]] && eval $module_calls
2928	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
2929	fi
2930
2931	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
2932	then
2933	printf "\n +++ error occured while compiling or linking"
2934	locat=compile
2935
2936	exit
2937	else
2938	printf "$striche\n *** compilation finished \n"
2939	fi
2940
2941	fi
2942
2943	fi
2944
2945
2946	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
2947	if [[ $local_compile = true ]]
2948	then
2949	cd $HOME
2950	rm -rf $TEMPDIR
2951	locat=local_compile; exit
2952	fi
2953
2954
2955	# BEREITSTELLEN DER INPUT-DATEIEN
2956	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
2957	(( i = 0 ))
2958	while (( i < iin ))
2959	do
2960	(( i = i + 1 ))
2961	if (( i == 1 ))
2962	then
2963	printf "\n\n *** providing INPUT-files:\n$striche"
2964	fi
2965
2966
2967	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
2968	if [[ "${transin[$i]}" = unavailable ]]
2969	then
2970	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
2971	then
2972	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
2973	printf "\n is not available!"
2974	else
2975	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
2976	printf "\n is not available!"
2977	fi
2978	continue
2979	fi
2980
2981	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
2982	files_for_pes=false; datentyp=file
2983	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
2984	then
2985	files_for_pes=true; datentyp=directory
2986	actionin[$i]=""
2987	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
2988	then
2989	actionin[$i]=""
2990	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
2991	then
2992	files_for_pes=true; datentyp=directory
2993	actionin[$i]="ar"
2994	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
2995	then
2996	actionin[$i]="ar"
2997	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
2998	then
2999	files_for_pes=true; datentyp=directory
3000	actionin[$i]="fl"
3001	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
3002	then
3003	actionin[$i]="fl"
3004	fi
3005
3006	if [[ $files_for_pes = true ]]
3007	then
3008	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
3009	else
3010	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
3011	fi
3012
3013	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
3014	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
3015	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
3016	# SERVER ZU HOLEN
3017	if [[ "${actionin[$i]}" = fl ]]
3018	then
3019	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
3020	if [[ $files_for_pes = false ]]
3021	then
3022	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
3023	then
3024	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
3025	got_tmp[$i]=true
3026	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3027	then
3028	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3029	printf "\n *** trying to use backup copy in \"$WORK\" "
3030	cp $WORK/${frelin[$i]} ${localin[$i]}
3031	else
3032	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3033	printf "\n or \"$tmp_data_catalog\" does not exist!"
3034	printf "\n *** trying to get copy from archive"
3035	actionin[$i]=ar
3036	fi
3037	else
3038	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
3039	then
3040	mkdir ${localin[$i]}
3041	cd $tmp_data_catalog/${frelin[$i]}
3042	for file in $(ls *)
3043	do
3044	ln $file $TEMPDIR/${localin[$i]}
3045	done
3046	cd $TEMPDIR
3047	got_tmp[$i]=true
3048	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
3049	then
3050	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
3051	printf "\n *** trying to use backup copy in \"$WORK\" "
3052	cp -r $WORK/${frelin[$i]} ${localin[$i]}
3053	else
3054	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
3055	printf "\n or \"$tmp_data_catalog\" does not exist!"
3056	printf "\n *** trying to get copy from archive"
3057	actionin[$i]=ar
3058	fi
3059	fi
3060	fi
3061
3062
3063	# DATEI LIEGT AUF ARCHIV-SERVER
3064	if [[ "${actionin[$i]}" = ar ]]
3065	then
3066
3067	if [[ $files_for_pes = false ]]
3068	then
3069	printf "\n file will be restored from archive-system ($archive_system)!"
3070	else
3071	printf "\n directory will be restored from archive-system ($archive_system)!"
3072	fi
3073
3074	file_restored=false
3075
3076	if [[ $archive_system = asterix ]]
3077	then
3078	do_stagein=true
3079	(( stagein_anz = 0 ))
3080	while [[ $do_stagein = true ]]
3081	do
3082	if [[ $files_for_pes = false ]]
3083	then
3084	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
3085	else
3086	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
3087	fi
3088	cat STAGEIN_OUTPUT
3089	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
3090	then
3091	file_restored=true
3092	do_stagein=false
3093	else
3094	(( stagein_anz = stagein_anz + 1 ))
3095	if (( stagein_anz == 10 ))
3096	then
3097	printf "\n +++ stagein stoped after 10 tries"
3098	locat=stage
3099	exit
3100	fi
3101	printf "\n +++ restoring from archive failed, trying again:"
3102	sleep 900
3103	fi
3104	done
3105	elif [[ $archive_system = DMF ]]
3106	then
3107	if [[ $files_for_pes = false ]]
3108	then
3109	printf "\n +++ restoring of single files impossible with $archive_system !\n"
3110	locat=DMF
3111	exit
3112	else
3113	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
3114	cp -r $ARCHIVE/${frelin[$i]} $PWD
3115	file_restored=true
3116	fi
3117	elif [[ $archive_system = tivoli ]]
3118	then
3119	if [[ $files_for_pes = false ]]
3120	then
3121	if [[ $localhost = lcsgih ]]
3122	then
3123	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3124	else
3125	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
3126	fi
3127	else
3128	(( inode = 0 ))
3129	while (( inode < nodes ))
3130	do
3131	if [[ $localhost = lcsgih ]]
3132	then
3133	ssh $SSH_PORTOPT $usern@hicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3134	else
3135	ssh $SSH_PORTOPT $usern@bicedata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
3136	fi
3137	(( inode = inode + 1 ))
3138	done
3139	fi
3140	file_restored=true
3141	elif [[ $archive_system = ut ]]
3142	then
3143	if [[ $files_for_pes = false ]]
3144	then
3145	cp $UT/${frelin[$i]} .
3146	else
3147	(( inode = 0 ))
3148	while (( inode < nodes ))
3149	do
3150	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
3151	(( inode = inode + 1 ))
3152	done
3153	fi
3154	file_restored=true
3155	else
3156	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
3157	locat=rearchive
3158	exit
3159	fi
3160
3161	if [[ $file_restored = true ]]
3162	then
3163
3164	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
3165	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
3166	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
3167	if [[ $files_for_pes = false ]]
3168	then
3169	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
3170	else
3171	mkdir $tmp_data_catalog/${frelin[$i]}
3172	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
3173	fi
3174	got_tmp[$i]=true
3175
3176	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
3177	mv ${frelin[$i]} ${localin[$i]}
3178
3179	fi
3180	fi
3181
3182
3183	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
3184	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
3185	then
3186
3187	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
3188	then
3189
3190	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
3191	printf "\n file will be provided for $numprocs processors"
3192	mkdir ${localin[$i]}
3193	ival=$numprocs
3194	(( ii = 0 ))
3195	while (( ii <= ival-1 ))
3196	do
3197	if (( ii < 10 ))
3198	then
3199	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
3200	elif (( ii < 100 ))
3201	then
3202	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
3203	elif (( ii < 1000 ))
3204	then
3205	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
3206	else
3207	cp ${absnamein[$i]} ${localin[$i]}/_$ii
3208	fi
3209	(( ii = ii + 1 ))
3210	done
3211
3212	else
3213
3214	if [[ $files_for_pes = true ]]
3215	then
3216
3217	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
3218	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
3219	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
3220	# PER MOVE UMBENANNT WERDEN
3221	printf "\n providing $numprocs files for the respective processors"
3222	mkdir ${localin[$i]}
3223	if [[ $link_local_input = true ]]
3224	then
3225	printf " using ln -f\n"
3226	cd ${absnamein[$i]}
3227	for file in $(ls *)
3228	do
3229	ln -f $file ${localin[$i]}
3230	done
3231	cd $TEMPDIR
3232	fi
3233	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
3234	if [[ ! -f "${localin[$i]}/_0000" ]]
3235	then
3236	if [[ $link_local_input = true ]]
3237	then
3238	printf " ln failed for .../_0000, using cp...\n"
3239	fi
3240	cp -r ${absnamein[$i]}/* ${localin[$i]}
3241	fi
3242
3243	else
3244	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
3245	if [[ $link_local_input = true ]]
3246	then
3247	printf " using ln -f\n"
3248	ln -f ${absnamein[$i]} ${localin[$i]}
3249	fi
3250	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
3251	if [[ ! -f "${localin[$i]}" ]]
3252	then
3253	if [[ $link_local_input = true ]]
3254	then
3255	printf " ln failed, using cp...\n"
3256	fi
3257	cp ${absnamein[$i]} ${localin[$i]}
3258	fi
3259	fi
3260	fi
3261	fi
3262
3263	done
3264	if (( i != 0 ))
3265	then
3266	printf "\n$striche\n *** all INPUT-files provided \n"
3267	fi
3268
3269
3270	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
3271	(( i = 0 ))
3272	while (( i < iic ))
3273	do
3274	(( i = i + 1 ))
3275	if (( i == 1 ))
3276	then
3277	printf "\n\n *** execution of INPUT-commands:\n$striche"
3278	fi
3279	printf "\n >>> ${in_command[$i]}"
3280	eval ${in_command[$i]}
3281	if (( i == iic ))
3282	then
3283	printf "\n$striche\n"
3284	fi
3285	done
3286
3287
3288	# VERBLEIBENDE CPU-ZEIT BERECHNEN
3289	cpurest=${cpumax}.
3290
3291
3292	# START DVR STREAMING SERVER
3293	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3294	then
3295	if [[ "$dvr_server" != "" ]]
3296	then
3297
3298	printf "\n\n *** preparing the dvr streaming server configuration file"
3299
3300	# Check, if a dvr server is already running
3301	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
3302	if [[ "$running_dvrserver_id" != "" ]]
3303	then
3304
3305	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
3306	printf "\n This server is used instead starting a new one!"
3307	printf "\n If required, script \"process_dvr_output\" has to be run manually."
3308
3309	else
3310
3311	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
3312	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
3313	then
3314	cp ${PALM_BIN}/.dvrserver.config .
3315
3316	# Entering the BASEDIR, UID and GID into this file
3317	user_id=`id -u`
3318	group_id=`id -g`
3319	# & is needed as seperator, because TEMPDIR contains /
3320	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
3321	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
3322	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
3323	mv .dvrserver.3 .dvrserver.config
3324	rm .dvrserver.1 .dvrserver.2
3325
3326	# Start dvr server in background, get his id and print on terminal
3327	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
3328	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
3329	printf "\n *** streaming server with id=$dvrserver_id is started in background"
3330	local_dvrserver_running=.TRUE.
3331	else
3332	printf "\n +++ missing file \".dvrserver.config\" in directory:"
3333	printf "\n \"$PALM_BIN\" "
3334	locat=dvr
3335	exit
3336	fi
3337
3338	fi
3339
3340	else
3341	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
3342	fi
3343	fi
3344
3345
3346	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
3347	# LESEN VON PALM)
3348	cat > ENVPAR << %%END%%
3349	&envpar run_identifier = '$fname', host = '$localhost',
3350	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
3351	maximum_parallel_io_streams = $maximum_parallel_io_streams,
3352	maximum_cpu_time_allowed = ${cpumax}.,
3353	revision = '$global_revision',
3354	local_dvrserver_running = $local_dvrserver_running /
3355
3356	%%END%%
3357
3358
3359	# PROGRAMMSTART
3360	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
3361	PATH=$PATH:$TEMPDIR
3362
3363	# MPI debug option (argument checking, slows down execution due to increased latency)
3364	if [[ "$mpi_debug" = true ]]
3365	then
3366	export MPI_CHECK_ARGS=1
3367	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
3368	fi
3369
3370	if [[ "$totalview" = true ]]
3371	then
3372	printf "\n *** totalview debugger will be used"
3373	tv_opt="-tv"
3374	else
3375	tv_opt=""
3376	fi
3377
3378	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
3379	then
3380	if [[ "$ENVIRONMENT" = BATCH ]]
3381	then
3382	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
3383	then
3384	printf "\n +++ debug is allowed in interactive mode only"
3385	locat=debug
3386	exit
3387	fi
3388	fi
3389	if [[ $localhost = ibmh ]]
3390	then
3391
3392	# SETUP THE IBM MPI ENVIRONMENT
3393	export MP_SHARED_MEMORY=yes
3394	export AIXTHREADS_SCOPE=S
3395	export OMP_NUM_THREADS=$threads_per_task
3396	export AUTHSTATE=files
3397	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3398
3399	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
3400	export MP_ADAPTER_USE=shared
3401	export MP_CPU_USE=multiple
3402	export MP_TIMEOUT=1200
3403
3404	unset MP_TASK_AFFINITY
3405
3406	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
3407	#(( ii = 1 ))
3408	#while (( ii <= $numprocs ))
3409	#do
3410	# echo $localhost_realname >> hostfile
3411	# (( ii = ii + 1 ))
3412	#done
3413	#export MP_HOSTFILE=hostfile
3414
3415	if [[ "$LOADLBATCH" = yes ]]
3416	then
3417	totalview poe a.out $ROPTS
3418	else
3419	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3420	export TVDSVRLAUNCHCMD=ssh
3421	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
3422	fi
3423	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
3424	then
3425	# CURRENTLY NO DEBUGGER ON LCSGI
3426	if [[ $run_coupled_model = true ]]
3427	then
3428	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
3429	locat=debug
3430	exit
3431	else
3432	echo "no_coupling" > runfile_atmos
3433	fi
3434	(( ii = $numprocs / $threads_per_task ))
3435	export OMP_NUM_THREADS=$threads_per_task
3436	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3437	if [[ $threads_per_task != 1 ]]
3438	then
3439	printf "\n threads per task: $threads_per_task"
3440	fi
3441	printf "\n\n"
3442	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3443	then
3444	# export MPI_LAUNCH_TIMEOUT=360
3445	if [[ "$totalview" = true ]]
3446	then
3447	printf "\n running totalview debugger"
3448	mpiexec_mpt $tv_opt -n $ii ./a.out $ROPTS < runfile_atmos
3449	else
3450	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3451	fi
3452	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3453	then
3454	# ulimit -s 300000 # A too large stack size causes problems
3455	# export MV2_NUM_PORTS=2
3456	# export MV2_CPU_MAPPING=0:1:2:3
3457	if [[ "$totalview" = true ]]
3458	then
3459	printf "\n running totalview debugger"
3460	mpiexec $tv_opt ./a.out $ROPTS < runfile_atmos
3461	else
3462	mpiexec ./a.out $ROPTS < runfile_atmos
3463	fi
3464	fi
3465	else
3466	printf "\n +++ no debug available on \"$localhost\" "
3467	printf "\n or not implemented in mrun so far"
3468	locat=debug
3469	exit
3470	fi
3471
3472	# end debug mode
3473	else
3474
3475	# normal execution
3476	if [[ -n $numprocs ]]
3477	then
3478	# RUNNING THE PROGRAM ON PARALLEL MACHINES
3479	if [[ $(echo $host \| cut -c1-3) = ibm ]]
3480	then
3481	# SETUP THE IBM MPI ENVIRONMENT
3482	if [[ $host != ibmh && $host != ibmkisti ]]
3483	then
3484	export MP_SHARED_MEMORY=yes
3485	export AIXTHREAD_SCOPE=S
3486	export OMP_NUM_THREADS=$threads_per_task
3487	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
3488	export AUTHSTATE=files
3489	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
3490	# export MP_PRINTENV=yes
3491
3492	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
3493	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
3494	export MP_WAIT_MODE=poll
3495	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
3496	fi
3497
3498	if [[ $host = ibmkisti ]]
3499	then
3500	export LANG=en_US
3501	export MP_SHARED_MEMORY=yes
3502	if [[ $threads_per_task = 1 ]]
3503	then
3504	export MP_SINGLE_THREAD=yes
3505	export MEMORY_AFFINITY=MCM
3506	else
3507	export OMP_NUM_THREADS=$threads_per_task
3508	fi
3509	fi
3510
3511	if [[ "$LOADLBATCH" = yes ]]
3512	then
3513	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
3514	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
3515	then
3516	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
3517	else
3518	if [[ $run_coupled_model = false ]]
3519	then
3520	if [[ "$ocean_file_appendix" = true ]]
3521	then
3522	echo "precursor_ocean" > runfile_atmos
3523	else
3524	echo "precursor_atmos" > runfile_atmos
3525	fi
3526	else
3527	(( iia = $numprocs_atmos / $threads_per_task ))
3528	(( iio = $numprocs_ocean / $threads_per_task ))
3529	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3530	printf "\n using $coupled_mode coupling"
3531	printf "\n\n"
3532	echo "coupled_run $iia $iio" > runfile_atmos
3533	fi
3534	poe ./a.out $ROPTS < runfile_atmos
3535	fi
3536	else
3537	if [[ $localhost = ibmh \|\| $localhost = ibms ]]
3538	then
3539	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
3540	elif [[ $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibmy ]]
3541	then
3542	if [[ -f $hostfile ]]
3543	then
3544	cp $hostfile hostfile
3545	else
3546	(( ii = 1 ))
3547	while (( ii <= $numprocs ))
3548	do
3549	echo $localhost_realname >> hostfile
3550	(( ii = ii + 1 ))
3551	done
3552	fi
3553	export MP_HOSTFILE=hostfile
3554	if [[ $run_coupled_model = false ]]
3555	then
3556	if [[ "$ocean_file_appendix" = true ]]
3557	then
3558	echo "precursor_ocean" > runfile_atmos
3559	else
3560	echo "precursor_atmos" > runfile_atmos
3561	fi
3562	else
3563	(( iia = $numprocs_atmos / $threads_per_task ))
3564	(( iio = $numprocs_ocean / $threads_per_task ))
3565	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3566	printf "\n using $coupled_mode coupling"
3567	printf "\n\n"
3568	echo "coupled_run $iia $iio" > runfile_atmos
3569	fi
3570	if [[ $localhost = ibmy ]]
3571	then
3572	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
3573	else
3574	poe ./a.out -procs $numprocs $ROPTS < runfile_atmos
3575	fi
3576
3577	else
3578	if [[ "$host_file" = "" ]]
3579	then
3580	printf "\n +++ no hostfile given in configuration file"
3581	locat=config_file
3582	exit
3583	else
3584	eval host_file=$host_file
3585	fi
3586	export MP_HOSTFILE=$host_file
3587	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
3588	fi
3589	fi
3590	elif [[ $host = nech \|\| $host = necriam ]]
3591	then
3592	(( ii = nodes ))
3593	if [[ $ii = 1 ]]
3594	then
3595	export F_ERRCNT=0 # acceptable number of errors before program is stopped
3596	export MPIPROGINF=YES
3597	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
3598	echo "*** execution on single node with mpirun"
3599	mpirun -np $numprocs ./a.out $ROPTS
3600	else
3601	(( i = 0 ))
3602	while (( i < ii ))
3603	do
3604	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
3605	(( i = i + 1 ))
3606	done
3607
3608	echo "#!/bin/sh" > mpi_exec_shell
3609	echo " " >> mpi_exec_shell
3610	echo "set -u" >> mpi_exec_shell
3611	echo "F_ERRCNT=0" >> mpi_exec_shell
3612	echo "MPIPROGINV=YES" >> mpi_exec_shell
3613	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
3614	echo "cpurest=$cpurest" >> mpi_exec_shell
3615	echo "fname=$fname" >> mpi_exec_shell
3616	echo "localhost=$localhost" >> mpi_exec_shell
3617	echo "return_addres=$return_addres" >> mpi_exec_shell
3618	echo "return_username=$return_username" >> mpi_exec_shell
3619	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
3620	echo "write_binary=$write_binary" >> mpi_exec_shell
3621	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3622	echo " " >> mpi_exec_shell
3623	echo "export F_ERRCNT" >> mpi_exec_shell
3624	echo "export MPIPROGINV" >> mpi_exec_shell
3625	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
3626	echo "export cpurest" >> mpi_exec_shell
3627	echo "export fname" >> mpi_exec_shell
3628	echo "export localhost" >> mpi_exec_shell
3629	echo "export return_addres" >> mpi_exec_shell
3630	echo "export return_username" >> mpi_exec_shell
3631	echo "export tasks_per_node" >> mpi_exec_shell
3632	echo "export write_binary" >> mpi_exec_shell
3633	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
3634	echo " " >> mpi_exec_shell
3635	echo "exec ./a.out" >> mpi_exec_shell
3636
3637	chmod u+x mpi_exec_shell
3638	export MPIPROGINF=YES
3639	mpirun -f multinode_config &
3640	wait
3641
3642	fi
3643	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lckyoto && $host != lctit ]]
3644	then
3645
3646	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
3647	# DOES NOT EXIST
3648	if [[ $host != lccrayb &&$host != lccrayf && $host != lcsgih && $host != lcsgib && $host != lckyuh && $host != lckyut ]]
3649	then
3650	if [[ -f $hostfile ]]
3651	then
3652	cp $hostfile hostfile
3653	(( ii = $numprocs / $threads_per_task ))
3654	else
3655	(( ii = 1 ))
3656	while (( ii <= $numprocs / $threads_per_task ))
3657	do
3658	echo $localhost_realname >> hostfile
3659	(( ii = ii + 1 ))
3660	done
3661	fi
3662	eval zeile=\"`head -n $ii hostfile`\"
3663	printf "\n *** running on: $zeile"
3664	fi
3665
3666	(( ii = $numprocs / $threads_per_task ))
3667	export OMP_NUM_THREADS=$threads_per_task
3668	# echo "*** OMP_NUM_THREADS=$OMP_NUM_THREADS"
3669	if [[ $threads_per_task != 1 ]]
3670	then
3671	# increase stack size to unlimited, because large runs
3672	# may abort otherwise
3673	ulimit -Ss unlimited
3674	printf "\n threads per task: $threads_per_task stacksize: unlimited"
3675	fi
3676	if [[ $run_coupled_model = false ]]
3677	then
3678	if [[ "$ocean_file_appendix" = true ]]
3679	then
3680	echo "precursor_ocean" > runfile_atmos
3681	else
3682	echo "precursor_atmos" > runfile_atmos
3683	fi
3684	printf "\n\n"
3685	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3686	then
3687	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3688	then
3689	# MPI_DSM_DISTRIBUTE not necessary when MPI_DSM_CPULIST is set
3690	# export MPI_DSM_DISTRIBUTE=1
3691	# MPI_DSM_CPULIST: pin MPI processes to cores
3692	if [[ $use_openmp = false ]]
3693	then
3694	if [[ "$sgi_feature" = ice2 ]]
3695	then
3696	export MPI_DSM_CPULIST="0,4,1,5,2,6,3,7:allhosts"
3697	else
3698	export MPI_DSM_CPULIST="0,1,4,5,2,3,6,7:allhosts"
3699	fi
3700	else
3701	unset MPI_DSM_CPULIST
3702	fi
3703	# MPI_IB_RAILS: use both IB rails on ICE2
3704	export MPI_BUFS_PER_HOST=512
3705	export MPI_IB_RAILS=2
3706	# NECESSARY, IF MORE THAN 4096 PEs ARE USED
3707	export MPI_CONNECTIONS_THRESHOLD=8192
3708	# echo "*** MPI_DSM_CPULIST=$MPI_DSM_CPULIST"
3709	export MPI_TYPE_DEPTH=20
3710	# echo "*** MPI_TYPE_DEPTH=$MPI_TYPE_DEPTH"
3711	export MPI_GROUP_MAX=64
3712	# echo "*** MPI_GROUP_MAX=$MPI_GROUP_MAX"
3713	if [[ $use_openmp = true ]]
3714	then
3715	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3716	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3717	else
3718	mpiexec_mpt -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3719	fi
3720
3721	# next is test for openmp usage
3722	# echo "mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3723	# mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos
3724	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3725	then
3726	export MV2_NUM_PORTS=2
3727	# The default setting of MV2_CPU_MAPPING gives best results
3728	# export MV2_ENABLE_AFFINITY=1
3729	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3730	# if [[ "$sgi_feature" = ice2 ]]
3731	# then
3732	# export MV2_CPU_MAPPING=0,4,1,5,2,6,3,7
3733	# else
3734	# export MV2_CPU_MAPPING=0,1,4,5,2,3,6,7
3735	# fi
3736	if [[ $use_openmp = true ]]
3737	then
3738	unset MV2_CPU_MAPPING
3739	export MV2_ENABLE_AFFINITY=0
3740	fi
3741	echo "*** MV2_CPU_MAPPING=$MV2_CPU_MAPPING"
3742	echo "*** MV2_ENABLE_AFFINITY=$MV2_ENABLE_AFFINITY"
3743	if [[ $use_openmp = true ]]
3744	then
3745	echo " mpiexec -npernode $tasks_per_node ./a.out $ROPTS < runfile_atmos"
3746	mpiexec -npernode $tasks_per_node $tv_opt ./a.out $ROPTS < runfile_atmos
3747	else
3748	mpiexec -np $ii $tv_opt ./a.out $ROPTS < runfile_atmos
3749	fi
3750	elif [[ "$mpilib" = impi ]]
3751	then
3752	echo "mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos"
3753	mpirun -np $ii inspxe-cl -r result -collect mi3 -- ./a.out < runfile_atmos
3754	fi
3755	elif [[ $host = lccrayb ]]
3756	then
3757	echo "--- aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos"
3758	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3759	# aprun -n $ii -ss -r2 -j1 a.out $ROPTS < runfile_atmos
3760	elif [[ $host = lccrayf ]]
3761	then
3762	aprun -n $ii -N $tasks_per_node -m ${memory}M a.out $ROPTS < runfile_atmos
3763	elif [[ $host = lcxe6 \|\| $host = lcxt5m ]]
3764	then
3765	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
3766	elif [[ $host = lcflow ]]
3767	then
3768	mpirun -bootstrap sge -np $ii -env I_MPI_FABRICS shm:ofa a.out < runfile_atmos $ROPTS
3769	elif [[ $host = lcsb ]]
3770	then
3771	mpirun_rsh -hostfile $PBS_NODEFILE -np `cat $PBS_NODEFILE \| wc -l` a.out < runfile_atmos $ROPTS
3772	elif [[ $host = lckiaps ]]
3773	then
3774	mpirun -np $ii -f $PBS_NODEFILE a.out < runfile_atmos $ROPTS
3775	elif [[ $host = lckyu* ]]
3776	then
3777	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3778	else
3779	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
3780	fi
3781	else
3782
3783	# currently there is no full MPI-2 support on ICE and XT4
3784	(( iia = $numprocs_atmos / $threads_per_task ))
3785	(( iio = $numprocs_ocean / $threads_per_task ))
3786	printf "\n coupled run ($iia atmosphere, $iio ocean)"
3787	printf "\n using $coupled_mode coupling"
3788	printf "\n\n"
3789
3790	if [[ $coupled_mode = "mpi2" ]]
3791	then
3792	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
3793	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
3794	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3795	then
3796
3797	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3798	then
3799	# export MPI_LAUNCH_TIMEOUT=360
3800	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
3801	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
3802	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3803	then
3804	# ulimit -s 300000 # A too large stack size causes problems
3805	# export MV2_NUM_PORTS=2
3806	# export MV2_CPU_MAPPING=0:1:2:3
3807	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
3808	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
3809	fi
3810
3811	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3812	then
3813
3814	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
3815	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
3816
3817	else
3818	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
3819	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
3820	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
3821	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
3822	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
3823	fi
3824	wait
3825
3826	else
3827
3828	echo "coupled_run $iia $iio" > runfile_atmos
3829	if [[ $host = lcsgih \|\| $host = lcsgib ]]
3830	then
3831
3832	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
3833	then
3834	# export MPI_LAUNCH_TIMEOUT=360
3835	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
3836	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
3837	then
3838	# ulimit -s 300000 # A too large stack size causes problems
3839	# export MV2_NUM_PORTS=2
3840	# export MV2_CPU_MAPPING=0:1:2:3
3841	mpiexec ./a.out $ROPTS < runfile_atmos
3842	fi
3843
3844	elif [[ $host = lccrayf \|\| $host = lcxe6 \|\| $host = lcxt5m ]]
3845	then
3846
3847	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
3848
3849	elif [[ $host = lck \|\| $host = lckordi ]]
3850	then
3851
3852	mpiexec -n $ii ./a.out $ROPTS < runfile_atmos &
3853
3854	elif [[ $host = lckyu* ]]
3855	then
3856
3857	mpiexec -n $ii --stdin runfile_atmos ./a.out $ROPTS
3858
3859	fi
3860	wait
3861	fi
3862
3863	fi
3864	elif [[ $host = lckyoto ]]
3865	then
3866	set -xv
3867	export P4_RSHCOMMAND=plesh
3868	echo " P4_RSHCOMMAND = $P4_RSHCOMMAND"
3869	if [[ "$ENVIRONMENT" = BATCH ]]
3870	then
3871	if [[ "$cond2" = fujitsu ]]
3872	then
3873	mpiexec -n $numprocs ./a.out $ROPTS # for fujitsu-compiler
3874	elif [[ "cond2" = pgi ]]
3875	then
3876	mpirun -np $numprocs -machinefile ${QSUB_NODEINF} ./a.out $ROPTS
3877	else
3878	mpirun_rsh -np $numprocs -hostfile ${QSUB_NODEINF} MV2_USE_SRQ=0 ./a.out ${ROPTS} \|\| /bin/true
3879	fi
3880	else
3881	if [[ "$cond2" = "" ]]
3882	then
3883	mpiruni_rsh -np $numprocs ./a.out $ROPTS # for intel
3884	else
3885	mpirun -np $numprocs ./a.out $ROPTS
3886	fi
3887	fi
3888	set +xv
3889	elif [[ $host = lctit ]]
3890	then
3891	export OMP_NUM_THREADS=$threads_per_task
3892	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
3893	if [[ "$threads_per_task" != 1 ]]
3894	then
3895	export MV2_ENABLE_AFFINITY=0
3896	fi
3897	echo "----- PBS_NODEFILE content:"
3898	cat $PBS_NODEFILE
3899	echo "-----"
3900	(( ii = $numprocs / $threads_per_task ))
3901	echo "mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS"
3902	mpirun -np $ii -hostfile $PBS_NODEFILE ./a.out $ROPTS
3903	else
3904	mpprun -n $numprocs a.out $ROPTS
3905	fi
3906	[[ $? != 0 ]] && execution_error=true
3907
3908
3909	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
3910	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
3911	then
3912	apprentice
3913	fi
3914	else
3915	a.out $ROPTS
3916	fi
3917	fi
3918	if [[ $? != 0 \|\| $execution_error = true ]]
3919	then
3920
3921	# ABBRUCH BEI LAUFZEITFEHLER
3922	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3923	printf "\n +++ runtime error occured"
3924	locat=execution
3925	exit
3926	else
3927	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
3928	printf "\n$striche\n *** execution finished \n"
3929
3930	# Stop the dvr streaming server and process the dvr output in order
3931	# to create dvrs- and html-files containing all streams
3932	if [[ "$dvrserver_id" != "" ]]
3933	then
3934	kill $dvrserver_id
3935	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
3936
3937	# If there is a directory, data have been output by the
3938	# streaming server. Otherwise, user has chosen dvrp_output=local
3939	if [[ -d DATA_DVR ]]
3940	then
3941
3942	# Add the current dvr configuration file to the dvr output
3943	# directory
3944	cp .dvrserver.config DATA_DVR
3945
3946	# Process the dvr output (option -s for also generating
3947	# sequence mode data)
3948	process_dvr_output -d DATA_DVR -f $fname -s
3949
3950	else
3951
3952	# Process the local output
3953	process_dvr_output -l -d DATA_DVR -f $fname
3954
3955	fi
3956
3957	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
3958	then
3959
3960	# Process dvr output generated in local mode (dvrp_output=local)
3961	process_dvr_output -l -d DATA_DVR -f $fname
3962
3963	fi
3964	fi
3965
3966
3967
3968	# Call of combine_plot_fields in order to merge single files written
3969	# by each PE into one file.
3970	if [[ ! -f ${PALM_BIN}/combine_plot_fields${block}.x ]]
3971	then
3972	printf "\n\n\n +++ WARNING: no combine_plot_fields found for given block \"$cond1 $cond2\""
3973	printf "\n 2d- and/or 3d-data may be incomplete!"
3974	printf "\n Run \"mbuild -u -h $localhost\" to generate utilities for this block.\n"
3975	elif [[ "$combine_plot_fields" == true ]]
3976	then
3977	printf "\n\n\n *** post-processing: now executing \"combine_plot_fields${block}.x\" ..."
3978	combine_plot_fields${block}.x
3979	else
3980	# Temporary solution to skip combine_plot_fields. This is necessary in case of huge amount of
3981	# data output. To do: extend this branch by creating a batch job for combine_plot_fields.
3982	printf "\n\n\n *** post-processing: skipping combine_plot_fields (-Z option set) ..."
3983	fi
3984
3985
3986
3987	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
3988	(( i = 0 ))
3989	while (( i < ioc ))
3990	do
3991	(( i = i + 1 ))
3992	if (( i == 1 ))
3993	then
3994	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
3995	fi
3996	printf "\n >>> ${out_command[$i]}"
3997	eval ${out_command[$i]}
3998	if (( i == ioc ))
3999	then
4000	printf "\n$striche\n"
4001	fi
4002	done
4003
4004
4005	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
4006	if [[ $do_trace = true ]]
4007	then
4008	printf "\n\n"
4009	ls -al
4010	fi
4011
4012
4013
4014	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
4015	(( i = 0 ))
4016	while (( i < iout ))
4017	do
4018	(( i = i + 1 ))
4019	if (( i == 1 ))
4020	then
4021	printf "\n\n *** saving OUTPUT-files:\n$striche"
4022	fi
4023
4024	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
4025	files_for_pes=false; filetyp=file
4026	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
4027	then
4028	files_for_pes=true; filetyp=directory
4029	actionout[$i]=""
4030	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
4031	then
4032	actionout[$i]=""
4033	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
4034	then
4035	files_for_pes=true; filetyp=directory
4036	actionout[$i]="ar"
4037	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
4038	then
4039	actionout[$i]="ar"
4040	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
4041	then
4042	files_for_pes=true; filetyp=directory
4043	actionout[$i]="fl"
4044	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
4045	then
4046	actionout[$i]="fl"
4047	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
4048	then
4049	files_for_pes=true; filetyp=directory
4050	actionout[$i]="tr"
4051	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
4052	then
4053	actionout[$i]="tr"
4054	fi
4055
4056	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
4057	then
4058	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
4059	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
4060	then
4061	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
4062	else
4063
4064
4065	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4066	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4067	# REMOTE-RECHNUNGEN
4068	if [[ "${actionout[$i]}" = tr ]]
4069	then
4070	if [[ $localhost != $fromhost ]]
4071	then
4072	if [[ $files_for_pes = false ]]
4073	then
4074	cps=""
4075	cst=""
4076	else
4077	cps=-c
4078	cst="/"
4079	fi
4080	if [[ $localhost = nech ]]
4081	then
4082
4083	# TRANSFER IN EIGENSTAENDIGEM JOB
4084	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4085	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4086	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4087	if [[ $files_for_pes = false ]]
4088	then
4089	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4090	else
4091	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
4092	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
4093	fi
4094
4095	echo "set -x" > transfer_${localout[$i]}
4096	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4097
4098	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
4099	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
4100	printf "\n or higher cycle\n"
4101	echo "batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4102
4103	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4104
4105	if [[ $localhost = nech ]]
4106	then
4107	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4108	else
4109	if [[ "$LOGNAME" = b323013 ]]
4110	then
4111	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4112	else
4113	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4114	fi
4115	fi
4116
4117	else
4118
4119	# TRANSFER INNERHALB DIESES JOBS
4120	transfer_failed=false
4121	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
4122	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
4123	batch_scp $PORTOPT $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4124	[[ $? != 0 ]] && transfer_failed=true
4125
4126	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4127	# LOKALER MASCHINE ANLEGEN
4128	if [[ $transfer_failed = true ]]
4129	then
4130	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4131	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4132
4133	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4134	# ANLEGEN.
4135	eval local_catalog=${pathout[$i]}
4136	if [[ ! -d $local_catalog ]]
4137	then
4138	printf " *** local directory does not exist. Trying to create:\n"
4139	printf " $local_catalog \n"
4140	mkdir -p $local_catalog
4141	fi
4142	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4143	transfer_problems=true
4144	fi
4145	fi
4146	else
4147
4148	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
4149	actionout[$i]=""
4150	fi
4151	fi
4152
4153
4154	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
4155	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
4156	# REMOTE-RECHNUNGEN
4157	if [[ "${actionout[$i]}" = tra ]]
4158	then
4159	if [[ $localhost != $fromhost ]]
4160	then
4161	if [[ $localhost = ibmh \|\| $localhost = nech ]]
4162	then
4163
4164	# TRANSFER IN EIGENSTAENDIGEM JOB
4165	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
4166	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
4167	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
4168	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
4169
4170	echo "set -x" > transfer_${localout[$i]}
4171	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
4172
4173	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
4174	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
4175	printf "\n or higher cycle\n"
4176	echo "batch_scp $PORTOPT -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
4177
4178	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
4179
4180	if [[ $localhost = nech ]]
4181	then
4182	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 $PORTOPT transfer_${localout[$i]}
4183	else
4184	if [[ $LOGNAME = b323013 ]]
4185	then
4186	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4187	else
4188	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog $PORTOPT transfer_${localout[$i]}
4189	fi
4190	fi
4191
4192	else
4193
4194	# TRANSFER INNERHALB DIESES JOBS
4195	transfer_failed=false
4196	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
4197	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
4198	batch_scp $PORTOPT -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
4199	[[ $? != 0 ]] && transfer_failed=true
4200
4201	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
4202	# LOKALER MASCHINE ANLEGEN
4203	if [[ $transfer_failed = true ]]
4204	then
4205	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
4206	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
4207
4208	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
4209	# ANLEGEN
4210	eval local_catalog=${pathout[$i]}
4211	if [[ ! -d $local_catalog ]]
4212	then
4213	printf " *** local directory does not exist. Trying to create:\n"
4214	printf " $local_catalog \n"
4215	mkdir -p $local_catalog
4216	fi
4217
4218	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
4219	transfer_problems=true
4220	fi
4221	fi
4222	else
4223
4224	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
4225	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
4226	actionout[$i]=a
4227	fi
4228	fi
4229
4230
4231	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
4232	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
4233	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
4234	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
4235	if [[ "${actionout[$i]}" = fl ]]
4236	then
4237	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4238	chmod g+rx $tmp_data_catalog
4239	if [[ $files_for_pes = false ]]
4240	then
4241	printf "\n >>> OUTPUT: ${localout[$i]} to"
4242	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4243	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
4244	else
4245	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
4246	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
4247	mkdir $tmp_data_catalog/${frelout[$i]}
4248	cd ${localout[$i]}
4249	for file in $(ls *)
4250	do
4251	ln -f $file $tmp_data_catalog/${frelout[$i]}
4252	done
4253	cd $TEMPDIR
4254	fi
4255
4256
4257	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
4258	if [[ $store_on_archive_system = true ]]
4259	then
4260
4261	if [[ $archive_system = asterix ]]
4262	then
4263	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4264	if [[ $files_for_pes = false ]]
4265	then
4266	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4267	else
4268	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4269	fi
4270	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4271	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
4272	echo "then" >> archive_${frelout[$i]}
4273	echo " do_stageout=false" >> archive_${frelout[$i]}
4274	echo "else" >> archive_${frelout[$i]}
4275	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
4276	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
4277	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
4278	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
4279	if [[ $files_for_pes = false ]]
4280	then
4281	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
4282	else
4283	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
4284	fi
4285	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
4286	echo "fi" >> archive_${frelout[$i]}
4287	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
4288	elif [[ $archive_system = DMF ]]
4289	then
4290	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4291	if [[ $files_for_pes = false ]]
4292	then
4293	printf "\n +++ archiving of single files impossible with $archive_system !\n"
4294	locat=DMF
4295	exit
4296	else
4297	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
4298	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
4299	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
4300	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
4301	fi
4302	elif [[ $archive_system = tivoli ]]
4303	then
4304	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4305	if [[ $files_for_pes = false ]]
4306	then
4307	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4308	echo "set -x" >> archive_${frelout[$i]}
4309	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4310	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4311	else
4312
4313	echo "set -x" >> archive_${frelout[$i]}
4314	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
4315	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4316	cd $tmp_data_catalog
4317	all_files=`ls -1 ${frelout[$i]}/*`
4318	cd - > /dev/null
4319	(( inode = 0 ))
4320	(( tp1 = tasks_per_node + 1 ))
4321	while (( inode < nodes ))
4322	do
4323	# echo "*** all_files = \"$all_files\" "
4324	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4325	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4326	# echo "*** tasks_per_node = \"$tasks_per_node\" "
4327	# echo "*** files = \"$files\" "
4328	# echo "*** all_files = \"$all_files\" "
4329	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4330	### echo "tar cvf ${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4331	### echo "cp ${frelout[$i]}.node_$inode.tar \$PERM/${frelout[$i]}/" >> archive_${frelout[$i]}
4332	###echo "rm ${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4333	# echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4334	# echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
4335	(( inode = inode + 1 ))
4336	done
4337	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4338	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4339	fi
4340	elif [[ $archive_system = ut ]]
4341	then
4342	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
4343	if [[ $files_for_pes = false ]]
4344	then
4345	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4346	echo "set -x" >> archive_${frelout[$i]}
4347	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4348	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4349	else
4350
4351	echo "set -x" >> archive_${frelout[$i]}
4352	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
4353	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
4354	cd $tmp_data_catalog
4355	all_files=`ls -1 ${frelout[$i]}/*`
4356	cd - > /dev/null
4357	(( inode = 0 ))
4358	(( tp1 = tasks_per_node + 1 ))
4359	while (( inode < nodes ))
4360	do
4361	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
4362	all_files=`echo $all_files \| cut -d" " -f$tp1-`
4363	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
4364	(( inode = inode + 1 ))
4365	done
4366	fi
4367	elif [[ $archive_system = none ]]
4368	then
4369	printf " +++ archiving on $localhost not available!\n"
4370	fi
4371
4372	if [[ $archive_system != none ]]
4373	then
4374	if [[ $localhost = lcsgih \|\| $localhost = lcsgib ]]
4375	then
4376	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4377	subjob -v -q permq -X 1 -T 1 -m 1000 -t 172800 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4378	elif [[ $localhost = nech ]]
4379	then
4380	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4381	fi
4382	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4383	fi
4384	else
4385	printf " +++ caution: option -A is switched off. No archiving on $archive_system!\n"
4386	fi
4387
4388
4389	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
4390	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4391	if [[ $files_for_pes = false ]]
4392	then
4393	cat /dev/null > ${pathout[$i]}
4394	else
4395	mkdir -p ${pathout[$i]}
4396	fi
4397
4398	fi
4399
4400
4401	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
4402	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
4403	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
4404	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
4405	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
4406	# GEMAESSEN ARCHIVIERUNGEN GESETZT
4407	if [[ "${actionout[$i]}" = ar ]]
4408	then
4409	if [[ $files_for_pes = false ]]
4410	then
4411	printf "\n >>> OUTPUT: ${localout[$i]} to"
4412	printf "\n ${pathout[$i]}"
4413	printf "\n File will be copied to archive-system ($archive_system) !\n"
4414	else
4415	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
4416	printf "\n ${pathout[$i]}"
4417	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
4418	fi
4419	mv ${localout[$i]} ${frelout[$i]}
4420
4421	file_saved=false
4422
4423	if [[ $archive_system = asterix ]]
4424	then
4425	do_stageout=true
4426	(( stageout_anz = 0 ))
4427	while [[ $do_stageout = true ]]
4428	do
4429	if [[ $files_for_pes = false ]]
4430	then
4431	stageout ${frelout[$i]} > STAGE_OUTPUT
4432	else
4433	stageout -t ${frelout[$i]} > STAGE_OUTPUT
4434	fi
4435	cat STAGE_OUTPUT
4436	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
4437	then
4438	file_saved=true
4439	do_stageout=false
4440	else
4441	if [[ $files_for_pes = false ]]
4442	then
4443	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
4444	else
4445	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
4446	fi
4447	(( stageout_anz = stageout_anz + 1 ))
4448	if (( stageout_anz == 10 ))
4449	then
4450	printf "\n +++ stoped after 10 unsuccessful tries!"
4451	archive_save=false
4452	do_stageout=false
4453	else
4454	printf "\n *** new try to store on archive after 15 min:"
4455	sleep 900
4456	fi
4457	fi
4458	done
4459	elif [[ $archive_system = DMF ]]
4460	then
4461	if [[ $files_for_pes = false ]]
4462	then
4463	printf "\n +++ archiving of single files impossible on $archive_system!\n"
4464	locat=DMF
4465	exit
4466	else
4467	rm -rf $ARCHIVE/${frelout[$i]}
4468	cp -r ${frelout[$i]} $ARCHIVE
4469	fi
4470	file_saved=true
4471	elif [[ $archive_system = tivoli ]]
4472	then
4473	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4474	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4475	# GELEGT WERDEN
4476	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4477	chmod g+rx $tmp_data_catalog
4478	if [[ $files_for_pes = false ]]
4479	then
4480	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4481	else
4482	mkdir $tmp_data_catalog/${frelout[$i]}
4483	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4484	fi
4485
4486	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4487	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4488	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4489	if [[ $files_for_pes = false ]]
4490	then
4491	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4492	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4493	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
4494	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4495	else
4496	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4497	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4498	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4499	fi
4500
4501	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog $PORTOPT archive_${frelout[$i]}
4502	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4503	file_saved=true
4504
4505	elif [[ $archive_system = ut ]]
4506	then
4507	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
4508	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
4509	# GELEGT WERDEN
4510	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
4511	chmod g+rx $tmp_data_catalog
4512	if [[ $files_for_pes = false ]]
4513	then
4514	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
4515	else
4516	mkdir $tmp_data_catalog/${frelout[$i]}
4517	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
4518	fi
4519
4520	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
4521	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
4522	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
4523	if [[ $files_for_pes = false ]]
4524	then
4525	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
4526	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4527	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
4528	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4529	else
4530	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
4531	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
4532	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
4533	fi
4534
4535	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 $PORTOPT archive_${frelout[$i]}
4536	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
4537	file_saved=true
4538
4539	else
4540	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
4541	archive_save=false
4542	fi
4543	if [[ $file_saved = true ]]
4544	then
4545	if [[ $files_for_pes = false ]]
4546	then
4547	cat /dev/null > ${pathout[$i]}
4548	else
4549	mkdir -p ${pathout[$i]}
4550	fi
4551	fi
4552	fi
4553
4554	# APPEND AUF LOKALER MASCHINE
4555	if [[ "${actionout[$i]}" = "a" ]]
4556	then
4557	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4558	then
4559	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}.${extout[$i]}\n"
4560	cat ${localout[$i]} >> ${pathout[$i]}.${extout[$i]}
4561	else
4562	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
4563	cat ${localout[$i]} >> ${pathout[$i]}
4564	fi
4565	fi
4566
4567	# KOPIEREN AUF LOKALER MASCHINE
4568	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
4569	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
4570	then
4571
4572	# KOPIEREN AUF EINPROZESSORMASCHINE
4573	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
4574	then
4575	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
4576	if [[ $link_local_output = true ]]
4577	then
4578	printf " using ln -f\n"
4579	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4580	fi
4581	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4582	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
4583	then
4584	if [[ $link_local_output = true ]]
4585	then
4586	printf " ln failed, using cp...\n"
4587	fi
4588	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
4589	fi
4590	else
4591	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
4592	if [[ $link_local_output = true ]]
4593	then
4594	printf " using ln -f\n"
4595	ln -f ${localout[$i]} ${pathout[$i]}
4596	fi
4597	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
4598	if [[ ! -f "${pathout[$i]}" ]]
4599	then
4600	if [[ $link_local_output = true ]]
4601	then
4602	printf " ln failed, using cp...\n"
4603	fi
4604	cp ${localout[$i]} ${pathout[$i]}
4605	fi
4606	fi
4607
4608	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
4609	then
4610
4611	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
4612	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
4613	# WIRD DANN KOPIERT
4614	# PER MOVE UMBENANNT WERDEN
4615	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
4616	if [[ $link_local_output = true ]]
4617	then
4618	printf " using ln -f\n"
4619	mkdir ${pathout[$i]}
4620	cd ${localout[$i]}
4621	for file in $(ls *)
4622	do
4623	ln -f $file ${pathout[$i]}
4624	done
4625	cd $TEMPDIR
4626	fi
4627	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
4628	if [[ ! -f "${pathout[$i]}/_0000" ]]
4629	then
4630	if [[ $link_local_output = true ]]
4631	then
4632	printf " ln failed for .../_0000, using cp...\n"
4633	fi
4634	cp -r ${localout[$i]} ${pathout[$i]}
4635	fi
4636
4637	fi
4638	fi
4639	done
4640	if (( i != 0 ))
4641	then
4642	if [[ $transfer_problems = true ]]
4643	then
4644	printf "\n$striche\n *** OUTPUT-files saved"
4645	printf "\n +++ WARNING: some data transfers failed! \n"
4646	else
4647	printf "\n$striche\n *** all OUTPUT-files saved \n"
4648	fi
4649	fi
4650
4651
4652	# EVENTUELL FOLGEJOB STARTEN
4653	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
4654	if [[ -f CONTINUE_RUN ]]
4655	then
4656
4657	if [[ $archive_save = true ]]
4658	then
4659
4660	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
4661	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
4662	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
4663	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
4664	# HANDEN
4665	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
4666	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
4667	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
4668	if [[ $(echo $mc \| grep -c "#") != 0 ]]
4669	then
4670	mc=`echo $mc \| sed 's/#/f/g'`
4671	fi
4672
4673
4674	# JOB STARTEN
4675	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
4676	echo " $mc"
4677	printf "\n$striche\n"
4678	if [[ $localhost != $fromhost ]]
4679	then
4680
4681	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmh \|\| $localhost = ibmkisti \|\| $localhost = ibmku \|\| $localhost = ibms \|\| $localhost = lcflow \|\| $localhost = lckyu* ]]
4682	then
4683	echo "*** ssh will be used to initiate restart-runs!"
4684	echo " return_addres=\"$return_addres\" "
4685	echo " return_username=\"$return_username\" "
4686	if [[ $(echo $return_addres \| grep -c "130.75.105") = 1 ]]
4687	then
4688	if [[ $localhost = ibmh ]]
4689	then
4690	ssh $SSH_PORTOPT $usern@136.172.40.15 "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4691	else
4692	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;. /muksoft/packages/intel/bin/compilervars.sh intel64;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4693	fi
4694	else
4695	if [[ $localhost = ibmkisti ]]
4696	then
4697	ssh $SSH_PORTOPT $usern@gaiad "ssh $SSH_PORTOPT $return_addres -l $return_username \"PATH=\\\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc\" "
4698	else
4699	if [[ $localhost = lcflow ]]
4700	then
4701	/usr/bin/ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4702	else
4703	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4704	fi
4705	fi
4706	fi
4707	else
4708	printf "\n +++ no restart mechanism available for host \"$localhost\" "
4709	locat=restart; exit
4710	fi
4711
4712	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
4713	# DER AKTUELLE JOB ENDET
4714	if [[ $queue = special1q ]]
4715	then
4716	sleep 120
4717	else
4718	sleep 30
4719	fi
4720
4721	else
4722
4723	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
4724	# RUFEN WERDEN, AUSSER AUF lcfimm
4725	cd $LOCAL_PWD
4726	if [[ $localhost = lcfimm ]]
4727	then
4728	ssh $SSH_PORTOPT $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
4729	elif [[ $localhost = lckyuh ]]
4730	then
4731	printf "\n +++ WARNING: no restart mechanism available for host \"$localhost\" "
4732	printf "\n please restart job manually using command:\n"
4733	printf "\n \"$mc\" "
4734	else
4735	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
4736	fi
4737	cd - > /dev/null
4738	fi
4739	if [[ $localhost = lckyuh ]]
4740	then
4741	printf "\n$striche\n *** restart-run to be initiated manually\n"
4742	else
4743	printf "\n$striche\n *** restart-run initiated \n"
4744	fi
4745
4746
4747	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
4748	# GEHOLT WORDEN SIND, LOESCHEN
4749	(( i = 0 ))
4750	while (( i < iin ))
4751	do
4752	(( i = i + 1 ))
4753	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
4754	then
4755	rm -r $tmp_data_catalog/${frelin[$i]}
4756	fi
4757	done
4758
4759	else
4760
4761	printf "\n +++ no restart-run possible, since errors occured"
4762	printf "\n during the archive process"
4763	fi
4764
4765	fi
4766
4767
4768
4769	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
4770	if [[ "$email_notification" != "none" ]]
4771	then
4772
4773	if [[ $localhost != $fromhost ]]
4774	then
4775	if [[ -f CONTINUE_RUN ]]
4776	then
4777	echo "PALM restart run necessary" > email_text
4778	echo "description header of actual run:" >> email_text
4779	cat CONTINUE_RUN >> email_text
4780	echo "mrun-command to restart:" >> email_text
4781	echo "$mc" >> email_text
4782	else
4783	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
4784	fi
4785	mail $email_notification < email_text
4786	printf "\n *** email notification sent to \"$email_notification\" "
4787	fi
4788	fi
4789
4790
4791
4792	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
4793	cd $HOME
4794	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
4795
4796	else
4797
4798
4799	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
4800	# CHENDE AKTIONEN DURCHGEFUEHRT
4801
4802	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
4803	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
4804	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
4805	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
4806	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
4807	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
4808	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
4809	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
4810	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
4811	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
4812	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
4813	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
4814	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
4815	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
4816	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
4817	if [[ $use_openmp = true ]]
4818	then
4819	mrun_com=${mrun_com}" -O $threads_per_task"
4820	fi
4821	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
4822	[[ $store_on_archive_system = true ]] && mrun_com=${mrun_com}" -A"
4823	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
4824	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
4825	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
4826	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
4827	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
4828	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
4829	[[ "$check_namelist_files" = false ]] && mrun_com=${mrun_com}" -z"
4830	[[ "$combine_plot_fields" = false ]] && mrun_com=${mrun_com}" -Z"
4831	[[ "$max_par_io_str" != "" ]] && mrun_com=${mrun_com}" -w $max_par_io_str"
4832	if [[ $do_remote = true ]]
4833	then
4834	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
4835	fi
4836
4837
4838	# create executable for batch job
4839	if [[ $create_executable_for_batch = true && $restart_run != true ]]
4840	then
4841
4842	printf "\n *** creating the executable for batch job\n"
4843
4844	# method only works for batch jobs on local hosts
4845	if [[ $host != $localhost ]]
4846	then
4847	printf "\n +++ creation of executables is only allowed for batch jobs on local hosts."
4848	printf "\n Please set create_executable_for_batch = false in the config-file.\n"
4849	locat=create_executable; exit
4850	fi
4851
4852	mkdir $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4853	cd $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4854
4855	cp $make_depository .
4856	tar -xf $make_depository > /dev/null 2>&1
4857	cp ../* . > /dev/null 2>&1
4858
4859	make $mopts -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
4860
4861	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
4862	then
4863	printf "\n +++ error occured while compiling or linking"
4864	locat=compile
4865	exit
4866	fi
4867
4868	mv a.out ..
4869	cd - > /dev/null 2>&1
4870	rm -rf $working_directory/SOURCES_FOR_RUN_${fname}/TMPDIR_FOR_CREATING_EXECUTABLE
4871
4872	printf " *** executable created in \"$working_directory/SOURCES_FOR_RUN_${fname}\"\n "
4873
4874	fi
4875
4876
4877	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
4878	jobfile=jobfile.$RANDOM
4879
4880
4881	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
4882	echo "mkdir $TEMPDIR" >> $jobfile
4883	echo "cd $TEMPDIR" >> $jobfile
4884
4885
4886	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
4887	if [[ $do_trace = true ]]
4888	then
4889	echo "set -x" >> $jobfile
4890	else
4891	echo "set +vx" >> $jobfile
4892	fi
4893
4894
4895	# initialize the environment and load modules
4896	if [[ "$init_cmds" != "" ]]
4897	then
4898	echo "$init_cmds" >> $jobfile
4899	fi
4900	if [[ "$module_calls" != "" ]]
4901	then
4902	echo "$module_calls" >> $jobfile
4903	fi
4904
4905
4906	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
4907	# DATEI FUER DEN JOB
4908	if [[ $( echo $host \| cut -c1-5 ) = lcsgi \|\| $host = ibmkisti \|\| $host = lccrayb \|\| $host = lccrayf ]]
4909	then
4910
4911	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
4912	# KOPIEREN
4913	if [[ $restart_run != true ]]
4914	then
4915	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
4916	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
4917	fi
4918
4919	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
4920	# (BEI JOBS AUF LOKALEM RECHNER REICHT CP)
4921	echo "set -x" >> $jobfile
4922	if [[ $host = $localhost ]]
4923	then
4924
4925	# DUE TO UNKNOWN REASONS, COPY WITH cp COMMAND CREATES CORRUPT
4926	# FILES ON CRAY XC30 SYSTEMS (CSC HELSINKI), rsync IS USED INSTEAD
4927	echo "rsync -ae -t $working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4928
4929	else
4930	if [[ $host != ibmkisti ]]
4931	then
4932	echo "scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
4933	else
4934	# on KISTI's IBM firewall is only opened on interactive node
4935	echo "localdir=\`pwd\`" >> $jobfile
4936	echo "ssh $SSH_PORTOPT $remote_username@gaiad \"cd \$localdir; scp $PORTOPT -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname .\" " >> $jobfile
4937	fi
4938	fi
4939	echo "export SOURCES_COMPLETE=true" >> $jobfile
4940
4941	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
4942	# ARBEITSVERZEICHNIS VERSCHIEBEN
4943	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
4944	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
4945	echo "chmod u+rwx $mrun_script_name" >> $jobfile
4946	echo "execute_mrun=true" >> $jobfile
4947	echo " " >> $jobfile
4948
4949	else
4950
4951	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
4952	# SOWIE GEGEBENENFALLS DES MAKEFILES
4953	if [[ $do_compile = true ]]
4954	then
4955
4956	source_catalog=SOURCES_FOR_RUN_$fname
4957
4958	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
4959	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
4960	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
4961	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
4962	echo "export SOURCES_COMPLETE=true" >> $jobfile
4963	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
4964
4965	for filename in $source_list
4966	do
4967	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4968	echo "cat > $filename << \"%END%\"" >> $jobfile
4969	cat $source_catalog/$filename >> $jobfile
4970	echo " " >> $jobfile
4971	echo "%END%" >> $jobfile
4972	echo " " >> $jobfile
4973	done
4974
4975	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4976	echo "cat > Makefile << \"%END%\"" >> $jobfile
4977	cat $source_catalog/Makefile >> $jobfile
4978	echo " " >> $jobfile
4979	echo "%END%" >> $jobfile
4980	echo " " >> $jobfile
4981
4982	echo "cd - > /dev/null" >> $jobfile
4983
4984	fi
4985
4986
4987	# ABSPEICHERN DER KONFIGURATIONSDATEI
4988	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
4989	# Lines with #$ coming from the svn keyword substitution are
4990	# removed from the config file in order to avoid problems
4991	# with the SGE batch system
4992	echo "cat > $config_file << \"%END%\"" >> $jobfile
4993	if [[ $host = lckyuh ]]
4994	then
4995	# no cross compiler on compute node
4996	sed 's/frtpx/frt/g' $config_file >> $jobfile
4997	else
4998	sed 's/#$.*//g' $config_file >> $jobfile
4999	fi
5000	echo "%END%" >> $jobfile
5001	echo " " >> $jobfile
5002
5003
5004	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
5005	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
5006	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
5007	if [[ $host = lckyuh ]]
5008	then
5009	sed 's/\/bin\/ksh/\/bin\/bash/g' ${PALM_BIN}/$mrun_script_name >> $jobfile
5010	else
5011	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
5012	fi
5013	echo "%END%" >> $jobfile
5014	echo "chmod u+x $mrun_script_name" >> $jobfile
5015	echo "execute_mrun=true" >> $jobfile
5016	echo " " >> $jobfile
5017
5018	fi
5019
5020
5021	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
5022	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
5023	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
5024	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
5025	if [[ $do_remote = true ]]
5026	then
5027	(( i = 0 ))
5028	while (( i < iin ))
5029	do
5030	(( i = i + 1 ))
5031	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
5032	if [[ "${transin[$i]}" = job ]]
5033	then
5034	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
5035	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
5036	echo " " >> $jobfile
5037	echo "%END%" >> $jobfile
5038	else
5039	echo "batch_scp $PORTOPT -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
5040	fi
5041
5042	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
5043	echo "if [[ \$? = 1 ]]" >> $jobfile
5044	echo "then" >> $jobfile
5045	echo " echo \" \" " >> $jobfile
5046	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
5047	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
5048	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
5049	echo " execute_mrun=false" >> $jobfile
5050	echo "fi" >> $jobfile
5051	done
5052	fi
5053
5054	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
5055	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
5056	echo "LOCAL_PWD=$working_directory" >> $jobfile
5057	echo "export LOCAL_PWD" >> $jobfile
5058
5059	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
5060	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
5061	echo "export LOCAL_MRUN_PATH" >> $jobfile
5062
5063	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
5064	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
5065	then
5066	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
5067	elif [[ $host = lcflow \|\| $localhost = lcflow ]]
5068	then
5069	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $jobfile
5070	echo "export PATH=\$PATH:\$PALM_BIN" >> $jobfile
5071	fi
5072
5073	# MRUN AUF ZIELRECHNER AUFRUFEN (queue is workaround for ibmkisti)
5074	echo "set -x" >> $jobfile
5075	echo "queue=$queue" >> $jobfile
5076	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
5077	echo 'ls -al; echo `pwd`' >> $jobfile
5078	echo "cd \$HOME" >> $jobfile
5079	echo "rm -rf $TEMPDIR" >> $jobfile
5080
5081
5082
5083
5084	# JOB PER SUBJOB STARTEN
5085	if [[ $silent = false ]]
5086	then
5087	printf "\n "
5088	else
5089	printf "\n\n"
5090	fi
5091
5092	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $PORTOPT $jobfile
5093	rm -rf $jobfile
5094
5095
5096	fi # ENDE REMOTE-TEIL
5097
5098
5099
5100	# ENDE DER PROZEDUR

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