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source: palm/trunk/SCRIPTS/mrun @ 362

Last change on this file since 362 was 362, checked in by letzel, 15 years ago
New: totalview on hice/bice also available for mvapich2 (mrun)
Property svn:keywords set to `Id Rev`
File size: 164.9 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
[169]	3	# $Id: mrun 362 2009-08-21 08:48:30Z letzel $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[149]	138	# 14/02/08 - Bjoern - link of restart files with long file name possible
	139	# 28/02/08 - Marcus - If environment variable link_local_output is set to
	140	# true, mrun tries "ln -f" on local output and resorts
	141	# to "cp" or "cp -r" on error
[164]	142	# 15/04/08 - Siggi - argument -c introduced to most of the subjob calls,
	143	# which allows the user to choose his own job catalog
	144	# by setting job_catalog in the configuration file
	145	# (default is ~/job_queue),
[172]	146	# workaround for mpiexec with -env option,
[164]	147	# adjustments for lcxt4 (Bergen Center for Computational
	148	# Science)
[183]	149	# 22/05/08 - Marcus - If environment variable link_local_input is set to
	150	# true, mrun tries "ln -f" on local input and resorts
	151	# to "cp" or "cp -r" on error
[180]	152	# 27/05/08 - Siggi - PATH is set to PALM_BIN everywhere (missing so far)
[179]	153	# 14/07/08 - Siggi - adjustments for lcsgih
[188]	154	# 08/08/08 - Marcus - typo removed in lcxt4 branch
[204]	155	# 17/09/08 - Siggi - restart mechanism adjusted for lcsgi
[210]	156	# 02/10/08 - BjornM - argument "-Y" modified, adjustments for coupled runs
	157	# 21/10/08 - Siggi - bugfix for the case that -K has more than one
	158	# argument
[211]	159	# 08/11/08 - Siggi - bugfix for depository path settings in configuration
	160	# file
	161	# 11/11/08 - Siggi - rules for using user code files changed: user
	162	# code splitted into one file per subroutine,
	163	# user can provide his/her own makefile, only
	164	# default source-code filenames are allowed
[215]	165	# 14/11/08 - Siggi - cond1 and cond2 are part of the depository name
[221]	166	# 08/01/09 - Siggi - mpi module on sgi machines to be used can be set
	167	# with environment variable mpilib
[223]	168	# 13/01/09 - Siggi - totalview on hice/bice can be used in debug mode
	169	# using environment variable totalview
[246]	170	# 25/02/09 - Siggi - cputime-option (-t) is allowed to be omitted for
	171	# interactive runs
[253]	172	# 05/03/09 - Siggi - adjustments for new NEC-SX9 at RIAM (necriam)
[260]	173	# 16/03/09 - Siggi - dvrp_lib, dvrp_inc replaced by dvr_lib, dvr_inc,
	174	# dvr streaming server is automatically started using
	175	# new variable dvr_server and a configuration file
	176	# .dvrserver.config,
[261]	177	# processing of dvr output files using new script
	178	# process_dvr_output implemented, in order to make
	179	# dvr application more user friendly
[265]	180	# 20/03/09 - Marcus - update of n1ge command for lctit
[291]	181	# 16/04/09 - Siggi - new option -y for precursor (uncoupled) ocean runs
	182	# to be followed by a coupled atmosphere-ocean run
[343]	183	# 21/04/09 - Siggi - adjustments for new IBM at DKRZ, which is now ibmh
	184	# 24/06/09 - BjornM - adjustments for coupled/precursor runs on ibmy
[352]	185	# 08/07/09 - Siggi - default value for email_notification is none,
	186	# option -e added to subjob
[359]	187	# 19/08/09 - Marcus - MPI debug option
[362]	188	# 21/08/09 - Marcus - totalview on hice/bice also available for mvapich2
[211]	189
[1]	190
	191	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	192
	193	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	194	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	195	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	196
	197	AddFilenames=""
	198	additional_conditions=""
	199	add_source_path=""
	200	afname=""
	201	archive_save=true
	202	archive_system=none
	203	compiler_name=""
	204	cond1=""
	205	cond2=""
	206	config_file=.mrun.config
[206]	207	coupled_dist=""
	208	coupled_mode="mpi1"
[1]	209	cpp_opts=""
[82]	210	cpp_options=""
[1]	211	cpumax=0
	212	cpurest=0
	213	delete_temporary_catalog=true
	214	do_batch=false
	215	do_compile=true
	216	do_remote=false
	217	do_stagein=true
	218	do_stageout=true
	219	do_trace=false
[352]	220	email_notification="none"
[1]	221	exclude=""
	222	executable=""
	223	execution_error=false
[67]	224	fimm=false
[1]	225	fname=test
	226	fromhost=""
[78]	227	global_revision=""
[122]	228	group_number=none
[1]	229	host=""
	230	host_file=""
	231	hp=""
	232	ignore_archive_error=false
	233	input_list=""
	234	interpreted_config_file=""
[164]	235	job_catalog="~/job_queue"
[1]	236	job_on_file=""
	237	keep_data_from_previous_run=false
[183]	238	link_local_input=false
[149]	239	link_local_output=false
[1]	240	localhost_realname=$(hostname)
	241	local_compile=false
[260]	242	local_dvrserver_running=.FALSE.
[1]	243	locat=normal
	244	mainprog=""
	245	makefile=""
	246	mc=$0
	247	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	248	do
	249	mc=`echo $mc \| cut -f2- -d"/"`
	250	done
	251	module_files=""
	252	mrun_script_name=$mc
[82]	253	netcdf_inc=""
	254	netcdf_lib=""
[1]	255	netcdf_support=false
	256	node_usage=default
	257	numprocs=""
[206]	258	numprocs_atmos=0
	259	numprocs_ocean=0
[1]	260	OOPT=""
	261	openmp=false
	262	output_list=""
	263	package_list=""
	264	punkte="..........................................................."
	265	queue=none
	266	read_from_config=""
[5]	267	restart_run=false
[146]	268	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	269	if [[ $return_addres = 130.75.105.158 ]]
	270	then
	271	return_addres=172.20.25.41
	272	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	273	fi
	274	return_password=""
	275	return_username=$LOGNAME
	276	remotecall=false
	277	remote_username=""
[102]	278	run_coupled_model=false
[1]	279	run_mode=""
	280	scirocco=false
	281	store_on_archive_system=true
	282	striche=" ----------------------------------------------------------------------------"
	283	silent=false
	284	source_list=""
	285	source_path=SOURCE
	286	tasks_per_node=""
	287	threads_per_task=1
	288	tmpcreate=false
	289	tmp_data_catalog=""
	290	transfer_problems=false
	291	usern=$LOGNAME
	292	working_directory=`pwd`
	293	TOPT=""
	294	XOPT=""
	295	zeit=$( date \| cut -c 12-19 )
	296
	297	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[206]	298	typeset -i cputime i ii iia iii iio icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	299
[66]	300	typeset -R30 calltime
[1]	301	typeset -L20 spalte1
	302	typeset -L40 spalte2
	303	typeset -L60 spalte3
	304	typeset -L35 string1=`date`
	305	typeset -L12 string2=$usern
	306	typeset -L12 string3=$localhost_realname
	307	typeset -L12 string4
	308	typeset -L12 string5
[201]	309	typeset -L30 version="MRUN 2.0 Rev$Rev: 362 $"
[1]	310
	311
	312
	313	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	314	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	315
	316	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	317	# EXPORTIERT WERDEN
	318	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	319	export group_number input_list memory numprocs output_list queue run_mode
[1]	320
	321
	322
	323	# FEHLERBEHANDLUNG
	324	# BEI EXIT:
[83]	325	trap 'rm -rf $working_directory/tmp_mrun
[69]	326	if [[ $locat != localhost ]]
[1]	327	then
[22]	328	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	329	# then
	330	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	331	#MRUN-calls on $localhost
	332	#
	333	#date and time user localhost remotehost termination mrun-command
	334	#--------------------------------------------------------------------------------------------------------------------
	335	#%STATEND%
	336	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	337	# fi
	338	#
	339	# # EINTRAG IN DIE STATISTIK-DATEI
	340	# string4=$host
	341	# string5=$locat
	342	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	343	# then
	344	# if [[ $do_batch = true ]]
	345	# then
	346	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	347	# else
	348	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	349	# fi
	350	# fi
[69]	351	echo " " > /dev/null
[1]	352	fi
	353
	354	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	355	then
	356
	357	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	358	(( i = 0 ))
	359	while (( i < iec ))
	360	do
	361	(( i = i + 1 ))
	362	printf "\n *** Execution of ERROR-command:\n"
	363	printf " >>> ${err_command[$i]}\n"
	364	eval ${err_command[$i]}
	365	done
	366	if [[ -n $interpreted_config_file ]] then
	367	rm -rf $interpreted_config_file
	368	fi
[71]	369	if [[ -n .mrun_environment ]] then
	370	rm -rf .mrun_environment
	371	fi
[1]	372	if [[ $tmpcreate = true ]]
	373	then
	374	printf "\n *** Contents of \"$TEMPDIR\":\n"
	375	ls -al; cd
	376	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	377	fi
[260]	378	if [[ "$dvrserver_id" != "" ]]
	379	then
	380	echo "+++ killing dvrserver_id=$dvrserver_id"
	381	kill $dvrserver_id
	382	fi
[1]	383	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	384	then
	385	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	386	fi
	387	printf "\n\n+++ MRUN killed \n\n"
	388	elif [[ $locat != control_c ]]
	389	then
	390	printf "\n\n --> all actions finished\n\n"
	391	printf " Bye, bye $usern !!\n\n"
	392	fi' exit
	393
	394
	395	# BEI TERMINAL-BREAK:
[83]	396	trap 'rm -rf $working_directory/tmp_mrun
[69]	397	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	398	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	399	then
	400	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	401	fi
[260]	402	if [[ "$dvrserver_id" != "" ]]
	403	then
	404	echo "+++ killing dvrserver_id=$dvrserver_id"
	405	kill $dvrserver_id
	406	fi
[1]	407	printf "\n+++ MRUN killed by \"^C\" \n\n"
	408	locat=control_c
	409	exit
	410	' 2
	411
	412
[22]	413	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	414	# BEEN SET
	415	if [[ "$PALM_BIN" = "" ]]
	416	then
	417	printf "\n +++ environment variable PALM_BIN has not been set"
	418	printf "\n please set it to the directory where the PALM scripts are located"
	419	locat=palm_bin; exit
	420	fi
[180]	421	export PATH=$PALM_BIN:$PATH
[22]	422
	423
[1]	424
	425	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	426	# FUER FOLGEJOBS BENOETIGT WIRD
[291]	427	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:yY: option
[1]	428	do
	429	case $option in
	430	(a) afname=$OPTARG;;
	431	(A) store_on_archive_system=false; mc="$mc -A";;
	432	(b) do_batch=true; mc="$mc -b";;
	433	(B) delete_temporary_catalog=false; mc="$mc -B";;
	434	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	435	(C) restart_run=true; mc="$mc -C";;
[1]	436	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
[210]	437	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D'$OPTARG'";;
[79]	438	(F) job_on_file="-D"; mc="$mc -F";;
[122]	439	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	440	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	441	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	442	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	443	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	444	(I) ignore_archive_error=true; mc="$mc -I";;
	445	(k) keep_data_from_previous_run=true; mc="$mc -k";;
[210]	446	(K) additional_conditions="$OPTARG"; mc="$mc -K'$OPTARG'";;
[1]	447	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	448	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	449	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	450	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	451	(O) use_openmp=true; mc="$mc -O";;
	452	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	453	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	454	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	455	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	456	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	457	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	458	(S) read_from_config=false; mc="$mc -S";;
	459	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	460	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	461	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	462	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	463	(v) silent=true; mc="$mc -v";;
	464	(x) do_trace=true;set -x; mc="$mc -x";;
	465	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[291]	466	(y) ocean_file_appendix=true; mc="$mc -y";;
[206]	467	(Y) run_coupled_model=true; coupled_dist=$OPTARG; mc="$mc -Y'$OPTARG'";;
[1]	468	(\?) printf "\n +++ unknown option $OPTARG \n"
	469	printf "\n --> type \"$0 ?\" for available options \n"
	470	locat=parameter;exit;;
	471	esac
	472	done
	473
	474
	475	# EVTL. POSITIONSPARAMETER EINLESEN
	476	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	477	shift OPTIND-1
	478
	479
	480	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	481	if [[ "$1" = "?" ]]
	482	then
	483	(printf "\n *** mrun can be called as follows:\n"
[291]	484	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. -y -Y.. <modus>\n"
[1]	485	printf "\n Description of available options:\n"
	486	printf "\n Option Description Default-Value"
	487	printf "\n -a base name of input files equiv. -d"
	488	printf "\n -A no archiving when using file-attribute fl"
	489	printf "\n -b batch-job on local machine ---"
	490	printf "\n -B do not delete temporary directory at end ---"
	491	printf "\n -c configuration file .mrun.config"
	492	printf "\n -d base name of files attached to program test"
	493	printf "\n -D preprocessor(cpp)-directives \"\" "
	494	printf "\n -F create remote job file only ---"
	495	printf "\n -h execution host $localhost_realname"
	496	printf "\n -i INPUT control list \"\" "
	497	printf "\n -I archiving errors of previous batch-jobs"
	498	printf "\n will be ignored"
	499	printf "\n -k keep data from previous run"
	500	printf "\n -K additional conditions for controling"
	501	printf "\n usage of conditional code and"
	502	printf "\n env-variables in configuration file \"\" "
	503	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	504	printf "\n -M Makefile name Makefile"
	505	printf "\n -n node usage (shared/not_shared) depending on -h"
	506	printf "\n -o OUTPUT control list \"\" "
	507	printf "\n -O use OpenMP ---"
	508	printf "\n -p software package list \"\" "
	509	printf "\n -q queue \"$queue\" "
	510	printf "\n -r run control list (combines -i -o) \"\" "
	511	printf "\n -s filenames of routines to be compiled \"\" "
	512	printf "\n must end with .f, .f90, .F, or .c !"
	513	printf "\n use \"..\" for more than one file and wildcards"
	514	printf "\n -s TEST compiles all files with w-permit"
	515	printf "\n -S config file interpreted by shellscript ---"
	516	printf "\n -t allowed cpu-time in seconds (batch) 0"
	517	printf "\n -T tasks per node depending on -h"
	518	printf "\n -u username on remote machine \"\" "
	519	printf "\n -v no prompt for confirmation ---"
	520	printf "\n -x tracing of mrun for debug purposes ---"
	521	printf "\n -X # of processors (on parallel machines) 1"
[291]	522	printf "\n -y add appendix \"_O\" to all local output"
	523	printf "\n files (ocean precursor runs followed by"
	524	printf "\n coupled atmosphere-ocean runs) ---"
[206]	525	printf "\n -Y run coupled model, \"#1 #2\" with"
	526	printf "\n #1 atmosphere and #2 ocean processors \"#/2 #/2\" depending on -X"
[1]	527	printf "\n "
	528	printf "\n Possible values of positional parameter <modus>:"
	529	printf "\n \"?\" - this outline \n\n") \| more
	530	exit
	531	elif [[ "$1" != "" ]]
	532	then
	533	printf "\n +++ positional parameter $1 unknown \n"
	534	locat=parameter; exit
	535	fi
	536
	537
	538
	539	# KURZE STARTMELDUNG
	540	printf "\n*** $version "
	541	printf "\n will be executed. Please wait ..."
	542
	543
[82]	544
	545	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	546	if [[ ! -f $config_file ]]
	547	then
	548	printf "\n\n +++ configuration file: "
	549	printf "\n $config_file"
	550	printf "\n does not exist"
	551	locat=connect; exit
	552	fi
	553
	554
	555	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	556	line=""
	557	grep "%host_identifier" $config_file > tmp_mrun
	558	while read line
	559	do
[206]	560	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[82]	561	then
	562	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	563	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	564	if [[ $localhost_realname = $HOSTNAME ]]
[82]	565	then
	566	localhost=$host_identifier
	567	break
	568	fi
	569	fi
	570	done < tmp_mrun
	571
	572	if [[ "$localhost" = "" ]]
	573	then
	574	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	575	printf "\n for local host \"$localhost_realname\"."
	576	printf "\n Please add line"
	577	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	578	printf "\n to the configuration file."
	579	locat=localhost; exit
	580	fi
	581
	582
	583	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	584	case $localhost_realname in
	585	(breg-en0\|berni-en0) archive_system=tivoli;;
	586	(cs*) archive_system=ut;;
	587	(fimm.bccs.uib.no) fimm=true;;
	588	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	589	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	590	(scirocco) scirocco=true;;
	591	esac
	592
	593
	594
[1]	595	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	596	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	597	[[ "$afname" = "" ]] && afname=$fname
	598
	599
	600	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	601	if [[ "$run_mode" != "" ]]
	602	then
	603	input_list="$input_list $run_mode"
	604	output_list="$output_list $run_mode"
	605	fi
	606
	607
	608	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	609	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	610	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	611	# STARTET)
	612	if [[ "$fromhost" = "" ]]
	613	then
	614	fromhost=$localhost
	615	fi
	616
	617
	618	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	619	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	620	then
	621	source_list=TEST
	622	local_compile=true
	623	host=$localhost
	624	fi
	625
	626
	627	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	628	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	629	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	630	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	631	if [[ -n $host && "$host" != $localhost ]]
	632	then
	633	do_batch=true
	634	do_remote=true
	635	case $host in
[251]	636	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|necriam\|lcsgib\|lcsgih\|lctit\|unics\|lcxt4) true;;
[1]	637	(*) printf "\n"
[83]	638	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	639	printf "\n is not available"
[1]	640	locat=nqs; (( iec = 0 )); exit;;
	641	esac
	642	else
	643	host=$localhost
	644	fi
	645
	646
	647	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	648	if [[ -n $additional_conditions ]]
	649	then
[69]	650	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	651	cond1=`echo $additional_conditions \| cut -d" " -f1`
	652	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	653	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	654	if [[ -n $dummy ]]
	655	then
	656	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	657	locat=options; exit
	658	fi
	659	fi
	660
	661
[206]	662	# KOPPLUNGSEIGENSCHAFTEN (-Y) AUSWERTEN UND coupled_mode BESTIMMEN
	663	if [[ $run_coupled_model = true ]]
	664	then
	665
	666	if [[ -n $coupled_dist ]]
	667	then
	668
	669	numprocs_atmos=`echo $coupled_dist \| cut -d" " -s -f1`
	670	numprocs_ocean=`echo $coupled_dist \| cut -d" " -s -f2`
	671
	672	if (( $numprocs_ocean + $numprocs_atmos != $numprocs ))
	673	then
	674
	675	printf "\n +++ number of processors does not fit to specification by \"-Y\"."
	676	printf "\n PEs (total) : $numprocs"
	677	printf "\n PEs (atmosphere): $numprocs_atmos"
	678	printf "\n PEs (ocean) : $numprocs_ocean"
	679	locat=coupling; exit
	680
	681	# REARRANGING BECAUSE CURRENTLY ONLY 1:1 TOPOLOGIES ARE SUPPORTED
	682	# THIS SHOULD BE REMOVED IN FUTURE
	683	elif (( $numprocs_ocean != $numprocs_atmos ))
	684	then
	685
	686	printf "\n +++ currently only 1:1 topologies are supported"
	687	printf "\n PEs (total) : $numprocs"
	688	printf "\n PEs (atmosphere): $numprocs_atmos"
	689	printf "\n PEs (ocean) : $numprocs_ocean"
	690	(( numprocs_atmos = $numprocs / 2 ))
	691	(( numprocs_ocean = $numprocs / 2 ))
	692	printf "\n +++ rearranged topology to $numprocs_atmos:$numprocs_ocean"
	693
	694	fi
	695
	696	else
	697
	698	(( numprocs_ocean = $numprocs / 2 ))
	699	(( numprocs_atmos = $numprocs / 2 ))
	700
	701	fi
	702	coupled_dist=`echo "$numprocs_atmos $numprocs_ocean"`
	703
	704	# GET coupled_mode FROM THE CONFIG FILE
	705	line=""
	706	grep "%cpp_options.-D__mpi2.$host" $config_file > tmp_mrun
	707	while read line
	708	do
	709	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" && ( $(echo $line \| cut -d" " -s -f4) = $cond1 \|\| $(echo $line \| cut -d" " -s -f4) = $cond2 ) ]]
	710	then
	711	coupled_mode="mpi2"
	712	fi
	713	done < tmp_mrun
	714
	715	fi
	716
	717
[1]	718	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	719	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	720	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	721	then
	722	if [[ $ignore_archive_error = false ]]
	723	then
	724	printf "\n +++ data archiving of previous run failed"
	725	printf "\n see directory \~/job_queue on remote machine"
	726	locat=archive; exit
	727	else
	728	printf "\n +++ warning: data archiving in a previous run failed"
	729	printf "\n MRUN continues, trying to get backup copy"
	730	fi
	731	fi
	732
	733
	734
	735	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	736	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	737	if [[ "$read_from_config" = false ]]
	738	then
	739
	740	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	741	while read zeile
	742	do
	743	[[ $silent = false ]] && printf "."
	744
	745
	746	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	747	# ERSETZEN
	748	eval zeile=\"$zeile\"
	749
	750
	751	# INTERPRETATION DER ZEILE
[21]	752	if [[ "$(echo $zeile)" = "" ]]
[1]	753	then
[21]	754	# LEERZEILE, KEINE AKTION
	755	continue
[1]	756
[21]	757	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	758	then
	759
[1]	760	# ZEILE IST KOMMENTARZEILE
	761	true
	762
	763	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	764	then
	765
	766	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	767	zeile=$(echo $zeile \| cut -c2-)
[69]	768	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	769	var=`echo $zeile \| cut -d" " -f1`
	770	value=`echo $zeile \| cut -d" " -s -f2`
	771	for_host=`echo $zeile \| cut -d" " -s -f3`
	772	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	773	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	774
	775	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	776	then
	777
	778	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	779	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	780	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	781
	782
	783	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	784	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	785	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	786	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	787	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	788	# KONFIGURATIONSDATEI
	789	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	790	then
	791	eval $var=\$value
	792
	793	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	794	if [[ $do_trace = true ]]
	795	then
	796	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	797	fi
	798	fi
	799
	800	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	801	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	802	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	803	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	804	if [[ $var = host ]]
	805	then
	806	if [[ -n $host && "$host" != $localhost ]]
	807	then
	808	do_batch=true
	809	do_remote=true
	810	case $host in
[251]	811	(ibm\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[83]	812	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	813	printf "\n is not available"
[1]	814	locat=nqs; exit;;
	815	esac
	816	else
	817	host=$localhost
	818	fi
	819	fi
	820
	821	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	822	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	823	# DEN PROGRAMMEN BENOETIGT WERDEN
	824	export $var
	825	fi
	826
	827
	828
	829
	830	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	831	then
	832
	833	# ZEILE DEFINIERT ERROR-KOMMANDO
	834	(( iec = iec + 1 ))
	835	zeile=$(echo $zeile \| cut -c4-)
	836	err_command[$iec]="$zeile"
	837
	838	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	839	then
	840
	841	# ZEILE DEFINIERT INPUT-KOMMANDO
	842	(( iic = iic + 1 ))
	843	zeile=$(echo $zeile \| cut -c4-)
	844	in_command[$iic]="$zeile"
	845
	846	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	847	then
	848
	849	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	850	(( ioc = ioc + 1 ))
	851	zeile=$(echo $zeile \| cut -c4-)
	852	out_command[$ioc]="$zeile"
	853
	854	else
	855
	856	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	857	# s2a: in/out - Feld
	858	# s2b: loc - Feld (optional)
	859	# s2c: tr/ar - Feld (optional)
[69]	860	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	861	s1=`echo $zeile \| cut -d" " -f1`
	862	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	863	s2a=$(echo $s2 \| cut -d":" -f1)
	864	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	865	then
	866	s2b=""
	867	s2c=""
	868	else
[69]	869	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	870	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	871	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	872	fi
[69]	873	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	874	s3=`echo $zeile \| cut -d" " -f3`
	875	s4=`echo $zeile \| cut -d" " -s -f4`
	876	s5=`echo $zeile \| cut -d" " -s -f5`
	877	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	878
	879
	880	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	881	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	882	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	883	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	884	# HANDEN SEIN MUSS (D.H. s2b = loc)
	885	IFSALT="$IFS"; IFS="$IFS:"
	886	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	887	then
	888	found=false
	889	for actual in $input_list
	890	do
	891	for formal in $s3
	892	do
	893	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	894	done
	895	done
	896	if [[ $found = true ]]
	897	then
	898	(( iin = iin + 1 ))
	899	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	900	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	901	extin[$iin]=$s6
	902	fi
	903	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	904	then
	905	found=false
	906	for actual in $output_list
	907	do
	908	for formal in $s3
	909	do
	910	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	911	done
	912	done
	913	if [[ $found = true ]]
	914	then
	915	(( iout = iout + 1 ))
	916	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	917	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	918	fi
	919	elif [[ "$s2a" != in && "$s2a" != out ]]
	920	then
	921	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	922	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	923	locat=connect; exit
	924	fi
	925	IFS="$IFSALT"
	926	fi
	927	done < $config_file
	928
	929	else
	930
	931
	932	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	933	[[ $silent = false ]] && printf "..."
	934	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	935	export interpreted_config_file=.icf.$RANDOM
	936
	937
[69]	938
	939	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	940	# VERFUEGUNG STELLEN
	941	cat > .mrun_environment << %%END%%
	942	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	943	config_file = '$config_file', do_remote = '$do_remote',
	944	do_trace = '$do_trace', host = '$host',
	945	input_list = '$input_list', icf = '$interpreted_config_file',
	946	localhost = '$localhost', output_list = '$output_list' /
	947
	948	%%END%%
	949
	950	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	951	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	952	mrun_memory=$memory
[127]	953	mrun_group_number=$group_number
[69]	954	mrun_cpumax=$cpumax
	955	mrun_numprocs=$numprocs
	956
[251]	957	if [[ $localhost_realname = "sx-fep" ]]
[66]	958	then
[251]	959	/home/COAR/NC/raasch/pub/interpret_config_necriam.x
[66]	960	else
	961	interpret_config.x
	962	fi
[71]	963	rm .mrun_environment
[1]	964
[71]	965
[1]	966	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	967	chmod u+x $interpreted_config_file
	968	export PATH=$PATH:.
	969	. $interpreted_config_file
[71]	970	rm $interpreted_config_file
[1]	971
[71]	972
[69]	973	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	974	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	975	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	976	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	977	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	978
[1]	979	fi
	980
	981
	982	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	983	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	984	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	985	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	986	if [[ "$SOURCES_COMPLETE" = "" ]]
	987	then
	988
	989	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	990	# VEREINBART WURDE
	991	source_path=""
	992	line=""
	993	grep "%source_path" $config_file > tmp_mrun
	994	while read line
	995	do
	996	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	997	then
	998	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	999	then
	1000	global_source_path=`echo $line \| cut -d" " -f2`
	1001	fi
	1002	fi
	1003	done < tmp_mrun
	1004
	1005	line=""
	1006	found=false
	1007	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	1008	while read line
	1009	do
	1010	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	1011	then
	1012	if [[ $found = true ]]
	1013	then
	1014	printf "\n\n +++ more than one source path found in configuration file"
	1015	printf "\n for local host \"$localhost\" "
	1016	locat=source_path; exit
	1017	fi
	1018	source_path=`echo $line \| cut -d" " -f2`
	1019	found=true
	1020	fi
	1021	done < tmp_mrun
	1022	rm tmp_mrun
	1023
	1024	if [[ "$source_path" = "" ]]
	1025	then
	1026	if [[ "$global_source_path" != "" ]]
	1027	then
	1028	source_path=$global_source_path
	1029	else
	1030	printf "\n\n +++ no source path found in configuration file"
	1031	printf "\n for local host \"$localhost\" "
	1032	locat=source_path; exit
	1033	fi
	1034	fi
	1035	eval source_path=$source_path
	1036
	1037	if [[ ! -d $source_path ]]
	1038	then
	1039	printf "\n\n +++ source path \"$source_path\" on local host"
	1040	printf "\n \"$localhost\" does not exist"
	1041	locat=source_path; exit
	1042	fi
	1043
	1044	fi
	1045
	1046
[78]	1047	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	1048	# DURCH OPTION -G MITGETEILT)
	1049	if [[ "$global_revision" = "" ]]
	1050	then
	1051	global_revision=`svnversion $source_path 2>/dev/null`
	1052	global_revision="Rev: $global_revision"
	1053	fi
[1]	1054
[78]	1055
[1]	1056	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	1057	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	1058	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	1059	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	1060	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	1061	if [[ -n $host && "$host" != $localhost ]]
	1062	then
	1063	do_batch=true
	1064	do_remote=true
	1065	case $host in
[251]	1066	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lcsgib\|lcsgih\|lctit\|nech\|necriam\|unics\|lcxt4) true;;
[1]	1067	(*) printf "\n"
[83]	1068	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	1069	printf "\n is not available"
[1]	1070	locat=nqs; (( iec = 0 )); exit;;
	1071	esac
	1072	else
	1073	host=$localhost
	1074	fi
	1075
	1076
	1077	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	1078	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	1079	then
	1080
	1081	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	1082	if [[ ! -n $numprocs ]]
	1083	then
	1084	printf "\n"
	1085	printf "\n +++ option \"-K parallel\" requires additional specification"
	1086	printf "\n of the number of processors to be used by"
	1087	printf "\n mrun-option \"-X\" or by environment-variable"
	1088	printf "\n \"numprocs\" in the configuration file"
	1089	locat=numprocs; (( iec = 0 )); exit
	1090	fi
	1091
	1092	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	1093	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	1094	# GESAMTPROZESSORANZAHL IST
[251]	1095	if [[ $host = nech \|\| $host = necriam \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
[1]	1096	then
	1097	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	1098	(( ival = $tasks_per_node ))
	1099	(( pes = numprocs ))
	1100	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	1101	# then
	1102	# (( pes = pes - 1 ))
	1103	# fi
	1104	(( ii = pes / ival ))
	1105	if (( pes - ii * ival > 0 ))
	1106	then
	1107	printf "\n"
	1108	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	1109	printf "\n divisor of the total number of processors (option \"-X\")"
	1110	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1111	locat=tasks_per_node; (( iec = 0 )); exit
	1112	fi
	1113	fi
	1114
	1115	# IBMY HAT NUR EINEN KNOTEN
	1116	if [[ $host = ibmy ]]
	1117	then
	1118	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	1119	then
	1120	printf "\n"
	1121	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	1122	printf "\n total number of processors (option \"-X\")"
	1123	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	1124	locat=tasks_per_node; (( iec = 0 )); exit
	1125	fi
	1126	fi
	1127
	1128	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1129	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1130	if [[ $use_openmp = true ]]
	1131	then
	1132	threads_per_task=$tasks_per_node
	1133	tasks_per_node=1
	1134	fi
	1135	OOPT="-O $threads_per_task"
	1136	TOPT="-T $tasks_per_node"
	1137
	1138	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1139	if [[ "$tasks_per_node" != "" ]]
	1140	then
	1141	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1142	fi
	1143
	1144	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1145	# SETZEN
	1146	if [[ $node_usage = default ]]
	1147	then
	1148	if [[ $host = ibms ]]
	1149	then
	1150	node_usage=shared
[118]	1151	elif [[ $host = lctit ]]
	1152	then
[265]	1153	node_usage=RAM64GB
[181]	1154	elif [[ $(echo $host \| cut -c1-5) = lcsgi ]]
	1155	then
	1156	node_usage=singlejob
[1]	1157	else
	1158	node_usage=not_shared
	1159	fi
	1160	fi
[181]	1161
[265]	1162	if [[ $node_usage != shared && $node_usage != not_shared && $node_usage != singlejob && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != RAM64GB ]]
[1]	1163	then
	1164	printf "\n"
	1165	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1166	printf "\n \"shared\" or \"not_shared\""
	1167	locat=tasks_per_node; (( iec = 0 )); exit
	1168	fi
	1169
	1170	fi
	1171
	1172	# PRUEFEN, OB HOSTFILE EXISTIERT
	1173	if [[ -n $hostfile ]]
	1174	then
	1175	if [[ ! -f $hostfile ]]
	1176	then
	1177	printf "\n"
	1178	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1179	locat=hostfile; exit
	1180	fi
	1181	fi
	1182
	1183	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1184	if [[ $host = ibmy && $do_remote = false ]]
	1185	then
	1186	if [[ ! -f $HOME/.rhosts ]]
	1187	then
	1188	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1189	printf "\n\n *** file:"
	1190	printf "\n $HOME/.rhosts"
	1191	printf "\n was created\n"
	1192	fi
	1193	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1194	then
	1195	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1196	printf "\n\n *** file:"
	1197	printf "\n $HOME/.rhosts"
	1198	printf "\n was extended by the name of the current host\n"
	1199	fi
	1200	fi
	1201
	1202
	1203
	1204	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1205	if [[ $queue = none ]]
	1206	then
	1207	case $host in
	1208	(ibmb) if [[ $node_usage = shared ]]
	1209	then
	1210	queue=cshare
	1211	else
	1212	queue=csolo
	1213	fi;;
[312]	1214	(ibmh) queue=no_class;;
[1]	1215	(ibmy) queue=parallel;;
[191]	1216	(lcsgib) queue=bigq;;
	1217	(lcsgih) queue=bigq;;
[265]	1218	(lctit) queue=RAM64GB;;
[1]	1219	(nech) queue=none;;
[253]	1220	(necriam) queue=SP;;
[1]	1221	(unics) queue=unics;;
	1222	esac
	1223	fi
	1224
	1225
	1226	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1227	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1228	# ERMITTELN
	1229	(( i = 0 ))
	1230	while (( i < iin ))
	1231	do
	1232	(( i = i + 1 ))
	1233	(( maxcycle = 0 ))
	1234
	1235	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1236	if [[ "${actionin[$i]}" = di ]]
	1237	then
	1238	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1239	# REM-MASCHINE AUSWERTEN
	1240	eval filename=${pathin[$i]}/${endin[$i]}
	1241	else
	1242	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1243	# REM-MASCHINE AUSWERTEN
	1244	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1245	fi
	1246
	1247	# PRUEFEN AUF VORHANDENSEIN
	1248	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1249	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1250	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1251	then
	1252	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1253	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1254	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1255	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1256	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1257	if [[ "${transin[$i]}" != "locopt" ]]
	1258	then
	1259	printf "\n\n +++ INPUT-file: "
	1260	if [[ "${extin[$i]}" = "" ]]
	1261	then
	1262	printf "\n $filename"
	1263	else
	1264	printf "\n $filename.${extin[$i]}"
	1265	fi
	1266	printf "\n does not exist\n"
	1267	locat=input; exit
	1268	else
	1269	transin[$i]="unavailable"
	1270	fi
	1271	else
	1272
	1273	# ZYKLUSNUMMER FESTSTELLEN
	1274	ls -1 -d $filename > filelist 2>/dev/null
	1275	ls -1 -d $filename.* >> filelist 2>/dev/null
	1276	while read zeile
	1277	do
	1278	cycle=$(print $zeile \| cut -f2 -d".")
	1279	if [[ "$cycle" = "$zeile" ]]
	1280	then
	1281	(( icycle = 0 ))
	1282	elif [[ "$cycle" = "${extin[$i]}" ]]
	1283	then
	1284	(( icycle = 0 ))
	1285	else
	1286	(( icycle = $cycle ))
	1287	fi
	1288	if (( icycle > maxcycle ))
	1289	then
	1290	(( maxcycle = icycle ))
	1291	file_to_be_used=$zeile
	1292	fi
	1293	done <filelist
	1294	rm filelist
	1295
	1296	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1297	if (( maxcycle > 0 ))
	1298	then
	1299	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1300	then
	1301	filename=${filename}.$maxcycle.${extin[$i]}
	1302	else
	1303	filename=${filename}.$maxcycle
	1304	fi
	1305	else
	1306	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1307	then
	1308	filename=${filename}.${extin[$i]}
	1309	fi
	1310	fi
	1311
	1312	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1313	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1314	absnamein[$i]=$filename
	1315	if (( maxcycle > 0 ))
	1316	then
	1317	if [[ "${actionin[$i]}" = di ]]
	1318	then
	1319	frelin[$i]=${endin[$i]}.$maxcycle
	1320	else
	1321	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1322	fi
	1323	else
	1324	if [[ "${actionin[$i]}" = di ]]
	1325	then
	1326	frelin[$i]=${endin[$i]}
	1327	else
	1328	frelin[$i]=${afname}${endin[$i]}
	1329	fi
	1330	fi
	1331
	1332	fi
	1333	done
	1334
	1335
	1336	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1337	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1338	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1339	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1340	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1341	(( i = 0 ))
	1342	while (( i < iout ))
	1343	do
	1344	(( i = i + 1 ))
	1345	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1346	then
[260]	1347	if [[ "${actionout[$i]}" = tr ]]
[1]	1348	then
	1349	actionout[$i]=""
[260]	1350	elif [[ "${actionout[$i]}" = trpe ]]
	1351	then
	1352	actionout[$i]=pe
[1]	1353	elif [[ "${actionout[$i]}" = tra ]]
	1354	then
	1355	actionout[$i]=a
	1356	fi
	1357	(( maxcycle = 0 ))
	1358	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1359	eval catalogname=${pathout[$i]}
	1360	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1361	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1362	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1363	then
	1364
	1365	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1366	if cat /dev/null > $filename
	1367	then
	1368	rm $filename
	1369	else
	1370
	1371	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1372	if [[ ! -d $catalogname ]]
	1373	then
	1374	if mkdir -p $catalogname
	1375	then
	1376	printf "\n\n *** directory:"
	1377	printf "\n $catalogname"
	1378	printf "\n was created\n"
	1379	else
	1380	printf "\n\n +++ OUTPUT-file:"
	1381	printf "\n $filename"
	1382	printf "\n cannot be created, because directory does not exist"
	1383	printf "\n and cannot be created either"
	1384	printf "\n"
	1385	locat=output ; exit
	1386	fi 2>/dev/null
	1387	else
	1388	printf "\n\n +++ OUTPUT-file:"
	1389	printf "\n $filename"
	1390	printf "\n cannot be created, although directory exists"
	1391	printf "\n"
	1392	locat=output ; exit
	1393	fi
	1394	fi 2>/dev/null
	1395	else
	1396
	1397	# ZYKLUSNUMMER FESTSTELLEN
	1398	ls -1 -d $filename > filelist 2>/dev/null
	1399	ls -1 -d $filename.* >> filelist 2>/dev/null
	1400	while read zeile
	1401	do
	1402	cycle=$(print $zeile \| cut -f2 -d".")
	1403	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1404	then
	1405	(( icycle = 1 ))
	1406	else
	1407	(( icycle = $cycle + 1 ))
	1408	fi
	1409	if (( icycle > maxcycle ))
	1410	then
	1411	(( maxcycle = icycle ))
	1412	fi
	1413	done <filelist
	1414	rm filelist
	1415	fi
	1416
	1417	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1418	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1419	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1420	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1421	if [[ "${actionout[$i]}" != a ]]
	1422	then
	1423	if (( maxcycle > 0 ))
	1424	then
	1425	filename=${filename}.$maxcycle
	1426	if cat /dev/null > $filename
	1427	then
	1428	rm $filename
	1429	else
	1430	printf "\n +++ OUTPUT-file:"
	1431	printf "\n $filename"
	1432	printf "\n cannot be created"
	1433	locat=output ; exit
	1434	fi
	1435	fi
	1436	else
	1437	(( maxcycle = maxcycle - 1 ))
	1438	if (( maxcycle > 0 ))
	1439	then
	1440	filename=${filename}.$maxcycle
	1441	fi
	1442	fi
	1443
	1444	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1445	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1446	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1447	pathout[$i]=$filename
	1448	if (( maxcycle > 0 ))
	1449	then
	1450	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1451	else
	1452	frelout[$i]=${fname}${endout[$i]}
	1453	fi
	1454
	1455	fi
	1456	done
	1457
	1458
[260]	1459	# DAS DVR-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
[83]	1460	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1461	then
[260]	1462	if [[ "$dvr_inc" = "" ]]
[83]	1463	then
[260]	1464	printf "\n\n +++ no value for \"dvr_inc\" given in configuration file"
[83]	1465	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1466	locat=dvr; exit
[83]	1467	fi
[260]	1468	if [[ "$dvr_lib" = "" ]]
[83]	1469	then
[260]	1470	printf "\n\n +++ no value for \"dvr_lib\" given in configuration file"
[83]	1471	printf "\n This is required for the dvrp_graphics package.\n"
[260]	1472	locat=dvr; exit
[83]	1473	fi
	1474	fi
	1475
	1476
[1]	1477	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1478	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1479	# UEBERSETZT ZU WERDEN)
	1480	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1481	then
	1482	printf "\n +++ neither main program nor executable defined"
	1483	locat=source; exit
	1484	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1485	then
	1486	printf "\n +++ main program as well as executable defined"
	1487	locat=source; exit
	1488	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1489	then
	1490	do_compile=false
	1491	fi
	1492
	1493
[191]	1494	# SOURCE-VERZEICHNIS ZUM AUFSAMMELN DER ZU UEBERSETZENDEN PROGRAMMTEILE
	1495	# ERZEUGEN. HIERHIN WERDEN SPAETER IM FALL VON BATCH-JOBS AUCH DAS MRUN-
	1496	# SCRIPTS SOWIE DIE KONFIGURATIONSDATEI KOPIERT
[193]	1497	if [[ $restart_run != true && "$SOURCES_COMPLETE" = "" ]]
[191]	1498	then
	1499	rm -rf SOURCES_FOR_RUN_$fname
	1500	mkdir SOURCES_FOR_RUN_$fname
	1501	fi
	1502
	1503
[1]	1504	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1505	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1506	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1507	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1508	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1509	then
	1510
[5]	1511	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1512	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1513
	1514
	1515	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1516	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1517	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1518	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1519	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1520	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1521	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1522	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1523	# GESAMMELT
[5]	1524	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1525	then
	1526
	1527	source_list=""
	1528	cd $source_path
	1529
	1530
	1531	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1532	Names=$(ls -1 *.f90 2>&1)
	1533	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1534	Names=$(ls -1 *.F90 2>&1)
	1535	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1536	Names=$(ls -1 *.F 2>&1)
	1537	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1538	Names=$(ls -1 *.f 2>&1)
	1539	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1540	Names=$(ls -1 *.c 2>&1)
	1541	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1542
	1543
	1544	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1545	for dateiname in $Filenames
	1546	do
	1547	if [[ -w $dateiname ]]
	1548	then
	1549	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1550	then
	1551	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1552	source_list=$source_list"$dateiname "
	1553	fi
	1554	fi
	1555	done
	1556
	1557	cd - > /dev/null
	1558
	1559
[5]	1560	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1561	then
	1562
	1563	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1564	source_list=""
	1565	cd $source_path
	1566
	1567
	1568	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1569	if [[ ! -d .svn ]]
	1570	then
	1571	printf "\n\n +++ source directory"
	1572	printf "\n \"$source_path\" "
	1573	printf "\n is not under control of \"subversion\"."
[306]	1574	printf "\n Please do not use mrun-option \"-s LOCALLY_MODIFIED\"\n"
[5]	1575	fi
	1576
	1577
	1578	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1579	Filenames=""
[69]	1580	svn status > tmp_mrun
	1581	while read line
[5]	1582	do
	1583	firstc=`echo $line \| cut -c1`
	1584	if [[ $firstc = M \|\| $firstc = "?" ]]
	1585	then
	1586	Name=`echo "$line" \| cut -c8-`
	1587	extension=`echo $Name \| cut -d. -f2`
	1588	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1589	then
	1590	Filenames="$Filenames "$Name
	1591	fi
	1592	fi
[69]	1593	done < tmp_mrun
[5]	1594
	1595
	1596	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1597	for dateiname in $Filenames
	1598	do
	1599	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1600	source_list=$source_list"$dateiname "
	1601	done
	1602
	1603	cd - > /dev/null
	1604
	1605
[1]	1606	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1607	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1608	# VORHANDEN
[5]	1609	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1610	then
	1611
	1612	cd $source_path
	1613
	1614	for filename in $source_list
	1615	do
	1616
	1617	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1618	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1619	then
	1620	printf "\n +++ source code file: $filename"
	1621	printf "\n must not contain (\"/\") "
	1622	locat=source; exit
	1623	fi
	1624
	1625	if [[ ! -f $filename ]]
	1626	then
	1627	printf "\n +++ source code file: $filename"
	1628	printf "\n does not exist"
	1629	locat=source; exit
	1630	else
	1631	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1632	fi
	1633
	1634	done
	1635
	1636	cd - > /dev/null
	1637
	1638	fi
	1639
	1640
	1641	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1642	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1643	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1644	if [[ $restart_run != true ]]
[1]	1645	then
	1646
	1647	if [[ ! -f "$source_path/$mainprog" ]]
	1648	then
	1649	printf "\n\n +++ main program: $mainprog"
	1650	printf "\n does not exist in source directory"
	1651	printf "\n \"$source_path\"\n"
	1652	locat=source; exit
	1653	else
	1654	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1655	then
	1656	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1657	source_list=${mainprog}" $source_list"
	1658	fi
	1659	fi
	1660	fi
	1661
	1662
[211]	1663	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1664	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
	1665	if [[ "$restart_run" != true ]]
	1666	then
	1667	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1668	if [[ ! -f $makefile ]]
	1669	then
	1670	printf "\n +++ file \"$makefile\" does not exist"
	1671	locat=make; exit
	1672	else
	1673	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1674	fi
	1675	fi
	1676
	1677
[1]	1678	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1679	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1680	then
	1681
	1682	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1683	if [[ ! -d $add_source_path ]]
	1684	then
	1685	printf "\n\n +++ WARNING: additional source code directory"
	1686	printf "\n \"$add_source_path\" "
	1687	printf "\n does not exist or is not a directory."
	1688	printf "\n No source code will be used from this directory!\n"
	1689	add_source_path=""
	1690	sleep 3
	1691	else
	1692
	1693	cd $add_source_path
[211]	1694	found=false
[1]	1695
	1696	Names=$(ls -1 *.f90 2>&1)
	1697	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1698	Names=$(ls -1 *.F90 2>&1)
	1699	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1700	Names=$(ls -1 *.F 2>&1)
	1701	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1702	Names=$(ls -1 *.f 2>&1)
	1703	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1704	Names=$(ls -1 *.c 2>&1)
	1705	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1706
	1707	cd - > /dev/null
	1708	cd SOURCES_FOR_RUN_$fname
	1709
[211]	1710	# COPY MAKEFILE IF EXISTING
	1711	if [[ -f $add_source_path/Makefile ]]
	1712	then
	1713	printf "\n\n *** user Makefile from directory"
	1714	printf "\n \"$add_source_path\" is used \n"
	1715	sleep 1
	1716	cp $add_source_path/Makefile .
	1717	fi
	1718
[1]	1719	for dateiname in $AddFilenames
	1720	do
	1721	if [[ -f $dateiname ]]
	1722	then
	1723	printf "\n +++ source code file \"$dateiname\" found in additional"
	1724	printf "\n source code directory \"$add_source_path\" "
[211]	1725	printf "\n but was also given with option \"-s\" which means that it should be taken"
	1726	printf "\n from directory \"$source_path\"."
[1]	1727	locat=source; exit
	1728	fi
	1729
	1730	cp $add_source_path/$dateiname .
	1731	source_list="$source_list $dateiname"
	1732
[211]	1733	# CHECK IF FILE IS CONTAINED IN MAKEFILE
	1734	if [[ $(grep -c $dateiname Makefile) = 0 ]]
	1735	then
	1736	printf "\n\n +++ user file \"$dateiname\" "
	1737	printf "\n is not listed in Makefile \n"
	1738	locat=source; exit
	1739	else
	1740
[1]	1741	# Default User-Interface von der Liste entfernen, falls Datei
	1742	# ein User-Interface enthaelt
[211]	1743	# if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1744	# then
	1745	# if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
	1746	# then
	1747	# rm -rf user_interface.f90
	1748	# source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
	1749	# printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
	1750	# printf "\n since a user-interface is found in file"
	1751	# printf "\n \"$add_source_path/$dateiname\" \n"
	1752	# sleep 3
	1753	# else
	1754	if [[ $found = false ]]
[1]	1755	then
[211]	1756	found=true
	1757	printf "\n\n *** following user file(s) added to the"
	1758	printf " files to be translated:\n "
[1]	1759	fi
[211]	1760	printf "$dateiname "
	1761	sleep 0.5
[1]	1762	fi
	1763	done
[211]	1764	[[ $found = true ]] && printf "\n"
[1]	1765	cd - > /dev/null
	1766	fi
	1767	fi
	1768
	1769
	1770	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1771	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1772	if [[ $restart_run != true && -n $package_list ]]
[1]	1773	then
	1774
	1775	cd $source_path
	1776
	1777	for package in $package_list
	1778	do
	1779
	1780	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1781
	1782	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1783	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1784	# LIEFERT
	1785	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1786
	1787
	1788	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1789	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1790	for source_list_name in $package_source_list
	1791	do
	1792	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1793	then
	1794
	1795	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1796	ending=`echo $source_list_name \| cut -f2 -d.`
	1797	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1798	then
	1799	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1800	source_list="$source_list $source_list_name"
	1801	fi
	1802	fi
	1803	done
	1804	done
	1805
	1806	cd - > /dev/null
	1807	fi
	1808
	1809
	1810	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1811	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[211]	1812	# if [[ "$restart_run" != true ]]
	1813	# then
	1814	# [[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1815	# if [[ ! -f $makefile ]]
	1816	# then
	1817	# printf "\n +++ file \"$makefile\" does not exist"
	1818	# locat=make; exit
	1819	# else
	1820	# cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1821	# fi
	1822	# fi
[1]	1823
	1824	fi # do_compile=true
	1825
	1826
	1827	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1828	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1829	if [[ $do_compile = true ]]
	1830	then
	1831
	1832	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1833	# ZUSAMMENSETZEN
[83]	1834	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1835	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1836	then
[82]	1837	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1838	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1839	then
[82]	1840	cpp_options="$cpp_options -D__nec"
	1841	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1842	then
	1843	cpp_options="$cpp_options -D__lc"
[1]	1844	else
[82]	1845	cpp_options="$cpp_options -D__$localhost"
[1]	1846	fi
[83]	1847
	1848	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1849	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1850	then
[82]	1851	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1852	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1853	else
[82]	1854	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1855	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1856	fi
[83]	1857
	1858	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1859	if [[ -n $package_list ]]
	1860	then
	1861	for package in $package_list
	1862	do
	1863	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1864	then
	1865	if [[ $package != "dvrp_graphics+1PE" ]]
	1866	then
[82]	1867	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1868	else
[82]	1869	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1870	export use_seperate_pe_for_dvrp_output=true
	1871	fi
	1872	else
	1873	if [[ $package != "dvrp_graphics+1PE" ]]
	1874	then
[82]	1875	cpp_options="$cpp_options -D__$package"
[1]	1876	else
[82]	1877	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1878	export use_seperate_pe_for_dvrp_output=true
	1879	fi
	1880	fi
	1881	done
	1882	fi
[83]	1883
	1884	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1885	if [[ -n $cpp_opts ]]
	1886	then
	1887	for popts in $cpp_opts
	1888	do
[82]	1889	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1890	then
	1891	cpp_options="${cpp_options},-D__$popts=__$popts"
	1892	else
	1893	cpp_options="$cpp_options -D__$popts"
	1894	fi
[1]	1895	done
	1896	fi
	1897
	1898	else
	1899
	1900
	1901	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1902	if [[ $do_remote = false ]]
	1903	then
	1904	if [[ ! -f $executable ]]
	1905	then
	1906	printf "\n +++ executable file: $executable"
	1907	printf "\n does not exist"
	1908	locat=executable; exit
	1909	fi
	1910	fi
	1911	fi
	1912
	1913
	1914	# JOBMODUS FESTSTELLEN
	1915	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1916	then
	1917	jobmo=BATCH
	1918	else
	1919	jobmo=INTERACTIVE
	1920	fi
	1921
	1922
	1923	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1924	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1925	if [[ "$compiler_name" = "" ]]
	1926	then
[82]	1927
[220]	1928	printf "\n +++ no compiler specified for \"$host $cond1 $cond2\""
[82]	1929	locat=compiler_name; exit
	1930
[1]	1931	fi
	1932
	1933
[251]	1934	# COMPILER AUF RIAMS NEC UEBERSCHREIBEN
	1935	[[ $localhost = necriam ]] && compiler_name=mpif90
[1]	1936
	1937
	1938
	1939	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1940	kennung=$RANDOM
	1941	if [[ "$tmp_user_catalog" = "" ]]
	1942	then
[312]	1943	if [[ $localhost = ibmh ]]
[1]	1944	then
[312]	1945	tmp_user_catalog=$SCRATCH
[1]	1946	elif [[ $localhost = nech ]]
	1947	then
	1948	tmp_user_catalog=$WRKSHR
	1949	else
	1950	tmp_user_catalog=/tmp
	1951	fi
	1952	fi
	1953	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1954
	1955
	1956	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1957	# BESTIMMEN
	1958	if [[ "$tmp_data_catalog" = "" ]]
	1959	then
[312]	1960	if [[ $localhost = ibmb ]]
[1]	1961	then
	1962	tmp_data_catalog=$WORK/mrun_restart_data
	1963	elif [[ $localhost = nech ]]
	1964	then
	1965	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1966	else
	1967	tmp_data_catalog=/tmp/mrun_restart_data
	1968	fi
	1969	fi
	1970
	1971
	1972	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1973	# ERSETZEN
	1974	if [[ $do_remote = false && $do_compile = true ]]
	1975	then
	1976	eval fopts=\"$fopts\"
	1977	eval lopts=\"$lopts\"
	1978	fi
	1979
	1980
	1981
	1982	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[260]	1983	fopts="$fopts $netcdf_inc $dvr_inc"
	1984	lopts="$lopts $netcdf_lib $dvr_lib"
[1]	1985	ROPTS="$ropts"
[179]	1986	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lcsgih \|\| $host = lcsgib \|\| $host = lctit \|\| $host = lcfimm \|\| $host = lcxt4 ) && -n $numprocs ]]
[1]	1987	then
	1988	XOPT="-X $numprocs"
	1989	fi
	1990
	1991
	1992
	1993	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1994	# GRAMM BENOETIGT
	1995	done=false
	1996	while [[ $done = false ]]
	1997	do
	1998	cputime=$cpumax
	1999	if (( $cputime == 0 ))
	2000	then
[246]	2001	if [[ $do_batch = true ]]
	2002	then
	2003	printf "\n +++ cpu-time is undefined"
	2004	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	2005	printf "\n >>> "
	2006	read cputime 1>/dev/null 2>&1
	2007	else
	2008	cputime=10000000 # NO CPU LIMIT FOR INTERACTIVE RUNS
	2009	fi
[1]	2010	else
	2011	done=true
	2012	fi
	2013	cpumax=$cputime
	2014	done
	2015
	2016	(( minuten = cputime / 60 ))
	2017	(( sekunden = cputime - minuten * 60 ))
	2018
	2019
	2020	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	2021	if [[ $do_batch = true ]]
	2022	then
	2023	done=false
	2024	while [[ $done = false ]]
	2025	do
	2026	if (( memory == 0 ))
	2027	then
	2028	printf "\n +++ memory demand is undefined"
	2029	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	2030	printf "\n >>> "
	2031	read memory 1>/dev/null 2>&1
	2032	else
	2033	done=true
	2034	fi
	2035	done
	2036	fi
	2037
	2038
	2039	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	2040	if [[ $do_remote = true && -z $remote_username ]]
	2041	then
	2042	while [[ -z $remote_username ]]
	2043	do
	2044	printf "\n +++ username on remote host \"$host\" is undefined"
	2045	printf "\n >>> Please type username:"
	2046	printf "\n >>> "
	2047	read remote_username
	2048	done
	2049	mc="$mc -u$remote_username"
	2050	fi
	2051
[221]	2052
	2053	# SET DEFAULT VALUE FOR MPI MODULE TO BE USED ON SGI-ALTIX
	2054	if [[ $host = lcsgib \|\| $host = lcsgih ]]
	2055	then
	2056	[[ "$mpilib" = "" ]] && export mpilib=mpt
	2057	fi
	2058
	2059
	2060
[1]	2061	###########################################################################
	2062	# HEADER-AUSGABE
	2063	###########################################################################
	2064
	2065
	2066	calltime=$(date)
	2067	printf "\n"
	2068	# [[ $silent = false ]] && clear
	2069	printf "#--------------------------------------------------------------# \n"
	2070	printf "\| $version$calltime \| \n"
	2071	printf "\| \| \n"
	2072	spalte1="called on:"; spalte2=$localhost_realname
	2073	printf "\| $spalte1$spalte2 \| \n"
	2074	if [[ $local_compile = false ]]
	2075	then
	2076	if [[ $do_remote = true ]]
	2077	then
	2078	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	2079	else
	2080	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	2081	fi
	2082	else
	2083	spalte1="compiling test only!"; spalte2=""
	2084	fi
	2085	printf "\| $spalte1$spalte2 \| \n"
	2086	if [[ -n $numprocs ]]
	2087	then
	2088	spalte1="number of PEs:"; spalte2=$numprocs
	2089	printf "\| $spalte1$spalte2 \| \n"
	2090	fi
	2091	if [[ -n $tasks_per_node ]]
	2092	then
	2093	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	2094	printf "\| $spalte1$spalte2 \| \n"
	2095	fi
	2096	if [[ $threads_per_task != 1 ]]
	2097	then
	2098	spalte1="threads per task:"; spalte2="$threads_per_task"
	2099	printf "\| $spalte1$spalte2 \| \n"
	2100	fi
	2101	printf "\| \| \n"
	2102	if [[ $do_compile = true ]]
	2103	then
[82]	2104	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	2105	printf "\| $spalte1$spalte2 \| \n"
[82]	2106	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	2107	while [[ "$zeile" != "" ]]
	2108	do
	2109	spalte1=""
	2110	spalte2=$zeile
	2111	printf "\| $spalte1$spalte2 \| \n"
	2112	zeile=$(echo "$zeile" \| cut -c41-)
	2113	done
	2114
[82]	2115	spalte1=compiler-options:; spalte2="$fopts"
[1]	2116	printf "\| $spalte1$spalte2 \| \n"
[82]	2117	zeile=$(echo "$fopts" \| cut -c41-)
[1]	2118	while [[ "$zeile" != "" ]]
	2119	do
	2120	spalte1=""
	2121	spalte2=$zeile
	2122	printf "\| $spalte1$spalte2 \| \n"
	2123	zeile=$(echo "$zeile" \| cut -c41-)
	2124	done
	2125
[82]	2126	spalte1=linker-options:; spalte2=$lopts
[1]	2127	printf "\| $spalte1$spalte2 \| \n"
[82]	2128	zeile=$(echo "$lopts" \| cut -c41-)
[1]	2129	while [[ "$zeile" != "" ]]
	2130	do
	2131	spalte1=""
	2132	spalte2=$zeile
	2133	printf "\| $spalte1$spalte2 \| \n"
	2134	zeile=$(echo "$zeile" \| cut -c41-)
	2135	done
	2136
	2137	spalte1="main program":; spalte2=$mainprog
	2138	printf "\| $spalte1$spalte2 \| \n"
	2139	else
	2140	spalte1=executable:; spalte2=$executable
	2141	printf "\| $spalte1$spalte2 \| \n"
	2142	fi
	2143	printf "\| \| \n"
	2144	spalte1="base name of files":; spalte2=$fname
	2145	printf "\| $spalte1$spalte2 \| \n"
	2146	if [[ $fname != $afname ]]
	2147	then
	2148	spalte1="base name of input files":; spalte2=$afname
	2149	printf "\| $spalte1$spalte2 \| \n"
	2150	fi
	2151	spalte1="INPUT control list":; spalte2=$input_list
	2152	printf "\| $spalte1$spalte2 \| \n"
	2153	spalte1="OUTPUT control list":; spalte2=$output_list
	2154	printf "\| $spalte1$spalte2 \| \n"
	2155
	2156	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	2157	then
	2158	spalte1="memory demand / PE":; spalte2="$memory MB"
	2159	printf "\| $spalte1$spalte2 \| \n"
	2160	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	2161	printf "\| $spalte1$spalte2 \| \n"
	2162	fi
	2163
	2164	if [[ $do_compile = true ]]
	2165	then
	2166	printf "\| \| \n"
	2167	printf "\| Files to be compiled: \| \n"
	2168	zeile=$source_list
	2169	while [[ "$zeile" != "" ]]
	2170	do
	2171	spalte3=$zeile
	2172	printf "\| $spalte3 \| \n"
	2173	zeile=$(echo "$zeile" \| cut -c61-)
	2174	done
	2175	fi
	2176	printf "#--------------------------------------------------------------#"
	2177
	2178
	2179
	2180	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	2181	if [[ $do_trace = true ]]
	2182	then
	2183	(( i = 0 ))
	2184	while (( i < iin ))
	2185	do
	2186	(( i = i + 1 ))
	2187	if (( i == 1 ))
	2188	then
	2189	printf "\n\n >>> INPUT-file assignments:\n"
	2190	fi
	2191	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2192	done
	2193	(( i = 0 ))
	2194	while (( i < iout ))
	2195	do
	2196	(( i = i + 1 ))
	2197	if (( i == 1 ))
	2198	then
	2199	printf "\n\n >>> OUTPUT-file assignments:\n"
	2200	fi
	2201	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2202	done
	2203	(( i = 0 ))
	2204	while (( i < iic ))
	2205	do
	2206	(( i = i + 1 ))
	2207	if (( i == 1 ))
	2208	then
	2209	printf "\n\n >>> INPUT-commands:\n"
	2210	fi
	2211	printf "\n ${in_command[$i]}"
	2212	done
	2213	(( i = 0 ))
	2214	while (( i < ioc ))
	2215	do
	2216	(( i = i + 1 ))
	2217	if (( i == 1 ))
	2218	then
	2219	printf "\n\n >>> OUTPUT-commands:\n"
	2220	fi
	2221	printf "\n ${out_command[$i]}"
	2222	done
	2223	fi
	2224
	2225
	2226	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2227	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2228	then
	2229	antwort=dummy
	2230	printf "\n\n"
	2231	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2232	do
	2233	printf " >>> everything o.k. (y/n) ? "
	2234	read antwort
	2235	done
	2236	if [[ $antwort = n \|\| $antwort = N ]]
	2237	then
	2238	locat=user_abort; (( iec = 0 )); exit
	2239	fi
	2240	if [[ $do_batch = true ]]
	2241	then
	2242	printf " >>> batch-job will be created and submitted"
	2243	else
	2244	if [[ $local_compile = false ]]
	2245	then
	2246	printf " >>> MRUN will now continue to execute on this machine"
	2247	else
	2248	printf " >>> a test compilation will now be carried out on this machine"
	2249	fi
	2250	fi
	2251	fi
	2252
	2253
	2254
	2255
	2256	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2257	# CHENDE AKTIONEN DURCHGEFUEHRT
	2258	if [[ $do_batch = false ]]
	2259	then
	2260
	2261
	2262	# TEMPORAEREN KATALOG ERZEUGEN
	2263	mkdir -p $TEMPDIR
	2264	chmod go+rx $TEMPDIR
	2265	tmpcreate=true
	2266
	2267
	2268	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2269	# TEMPORAERES VERZEICHNIS KOPIEREN
	2270	if [[ $do_compile = true ]]
	2271	then
	2272
	2273	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2274	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2275	if [[ $localhost = nech ]]
	2276	then
	2277	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2278	if mkdir -p $TEMPDIR_COMPILE
	2279	then
	2280	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2281	printf "\n is generated as temporary directory for cross compiling\n"
	2282	else
	2283	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2284	printf "\n needed for cross compilation failed"
	2285	locat=compile
	2286	exit
	2287	fi
	2288	else
	2289	TEMPDIR_COMPILE=$TEMPDIR
	2290	fi
	2291
	2292
[82]	2293	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2294	line=""
	2295	grep "%depository_path" $config_file > tmp_mrun
	2296	while read line
	2297	do
	2298	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2299	then
	2300	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2301	then
[82]	2302	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2303	fi
[82]	2304	fi
	2305	done < tmp_mrun
[1]	2306
[82]	2307	line=""
	2308	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2309	while read line
	2310	do
	2311	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2312	then
[211]	2313	if [[ "$(echo $line \| cut -d" " -s -f4)" = "$cond1" && "$(echo $line \| cut -d" " -s -f5)" = "$cond2" ]]
	2314	then
	2315	local_depository_path=`echo $line \| cut -d" " -s -f2`
	2316	fi
[1]	2317	fi
[82]	2318	done < tmp_mrun
[1]	2319
[82]	2320	if [[ "$local_depository_path" = "" ]]
	2321	then
	2322	if [[ "$global_depository_path" != "" ]]
[1]	2323	then
[82]	2324	local_depository_path=$global_depository_path
[1]	2325	else
[82]	2326	printf "\n\n +++ no depository path found in configuration file"
	2327	printf "\n for local host \"$localhost\" "
	2328	printf "\n please set \"\%depository_path\" in configuration file\n"
	2329	locat=config_file; exit
[1]	2330	fi
[82]	2331	fi
	2332	eval local_depository_path=$local_depository_path
[215]	2333	[[ "$cond1" != "" ]] && local_depository_path=${local_depository_path}_$cond1
	2334	[[ "$cond2" != "" ]] && local_depository_path=${local_depository_path}_$cond2
[1]	2335
[215]	2336
[82]	2337	basename=`print $mainprog \| cut -f1 -d"."`
	2338	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2339	if [[ ! -f $make_depository ]]
	2340	then
	2341	printf "\n"
	2342	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2343	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2344	else
	2345	cp $make_depository $TEMPDIR_COMPILE
[1]	2346	cd $TEMPDIR_COMPILE
[82]	2347	tar -xf $make_depository > /dev/null 2>&1
[1]	2348	cd - > /dev/null
	2349	fi
[82]	2350
	2351	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2352
	2353	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2354	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2355	# MAKEFILE EINTRAGEN
[211]	2356	# cd $TEMPDIR_COMPILE
	2357	# interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2358	# if [[ "$interface_file" != "" ]]
	2359	# then
	2360	# interface_file=`echo $interface_file \| cut -d"." -f1`
	2361	# mv Makefile Makefile_old
	2362	# sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2363	# fi
	2364	# cd - > /dev/null
[1]	2365	else
	2366	cp $executable ${TEMPDIR}/a.out
	2367	fi
	2368
	2369
	2370	# WECHSEL IN TEMPORAEREN KATALOG
	2371	cd $TEMPDIR
	2372	printf "\n *** changed to temporary directory: $TEMPDIR"
	2373
	2374
	2375	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2376	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2377	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2378	# ERMITTELN
	2379	(( i = 0 ))
	2380	while (( i < iout ))
	2381	do
	2382	(( i = i + 1 ))
	2383	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2384	then
	2385	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2386	else
	2387	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2388	fi
	2389	done
	2390
	2391
	2392	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2393	if [[ $do_compile = true ]]
	2394	then
	2395
	2396
	2397	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2398	printf "\n\n\n *** compilation starts \n$striche\n"
	2399	printf " *** compilation with make using following options:\n"
[211]	2400	printf " make depository: $make_depository"
[82]	2401	printf " compilername: $compiler_name\n"
	2402	printf " options: $fopts\n"
	2403	printf " preprocessor-directives: $cpp_options \n"
	2404	printf " linker-options: $lopts \n"
	2405	printf " source code files: $source_list \n"
	2406
	2407	if [[ $localhost = nech ]]
[1]	2408	then
[82]	2409	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2410	cp $TEMPDIR_COMPILE/a.out .
	2411	[[ $? != 0 ]] && compile_error=true
	2412	rm -rf $TEMPDIR_COMPILE
[312]	2413	elif [[ $localhost = ibmh ]]
	2414	then
[325]	2415	printf " compiler is called via ssh on \"plogin1\" \n"
	2416	ssh plogin1 -l $usern "export PATH=/sw/ibm/xlf/12.1.0.3/usr/bin:$PATH; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[312]	2417	[[ ! -f a.out ]] && compile_error=true
	2418	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[197]	2419	elif [[ $localhost = lcsgib ]]
	2420	then
[221]	2421	printf " compiler is called via ssh on \"bicegate\" using module \"$mpilib\" \n"
[291]	2422	ssh 130.73.232.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
[197]	2423	[[ ! -f a.out ]] && compile_error=true
	2424	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
	2425	elif [[ $localhost = lcsgih ]]
	2426	then
[221]	2427	printf " compiler is called via ssh on \"hicegate2\" using module \"$mpilib\" \n"
	2428	ssh 130.75.4.103 -l $usern ". /usr/share/modules/init/bash; module load $mpilib; cd $TEMPDIR; make -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" 2>&1 "
[197]	2429	[[ ! -f a.out ]] && compile_error=true
	2430	continue # ANDERENFALLS IST STATUS=1, FALLS A.OUT VORHANDEN
[1]	2431	else
[118]	2432	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2433	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2434	fi
[1]	2435
	2436	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2437	then
	2438	printf "\n +++ error occured while compiling or linking"
	2439	locat=compile
[181]	2440
[182]	2441	# WORKAROUND: REMOVE IF CONSTRUCT LATER, BUT KEEP THE EXIT!
[197]	2442	# if [[ $localhost != lcsgib && $localhost != lcsgih ]]
	2443	# then
[181]	2444	exit
[197]	2445	# else
	2446	# locat=normal
	2447	# fi
[1]	2448	else
	2449	printf "$striche\n *** compilation finished \n"
	2450	fi
	2451	fi
	2452
	2453
	2454	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2455	if [[ $local_compile = true ]]
	2456	then
	2457	cd $HOME
	2458	rm -rf $TEMPDIR
	2459	locat=local_compile; exit
	2460	fi
	2461
	2462
	2463	# BEREITSTELLEN DER INPUT-DATEIEN
	2464	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2465	(( i = 0 ))
	2466	while (( i < iin ))
	2467	do
	2468	(( i = i + 1 ))
	2469	if (( i == 1 ))
	2470	then
	2471	printf "\n\n *** providing INPUT-files:\n$striche"
	2472	fi
	2473
	2474
	2475	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2476	if [[ "${transin[$i]}" = unavailable ]]
	2477	then
	2478	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2479	then
	2480	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2481	printf "\n is not available!"
	2482	else
	2483	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2484	printf "\n is not available!"
	2485	fi
	2486	continue
	2487	fi
	2488
	2489	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2490	files_for_pes=false; datentyp=file
	2491	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2492	then
	2493	files_for_pes=true; datentyp=directory
	2494	actionin[$i]=""
	2495	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2496	then
	2497	actionin[$i]=""
	2498	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2499	then
	2500	files_for_pes=true; datentyp=directory
	2501	actionin[$i]="ar"
	2502	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2503	then
	2504	actionin[$i]="ar"
	2505	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2506	then
	2507	files_for_pes=true; datentyp=directory
	2508	actionin[$i]="fl"
	2509	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2510	then
	2511	actionin[$i]="fl"
	2512	fi
	2513
	2514	if [[ $files_for_pes = true ]]
	2515	then
	2516	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2517	else
	2518	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2519	fi
	2520
	2521	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2522	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2523	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2524	# SERVER ZU HOLEN
	2525	if [[ "${actionin[$i]}" = fl ]]
	2526	then
	2527	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2528	if [[ $files_for_pes = false ]]
	2529	then
	2530	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2531	then
	2532	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2533	got_tmp[$i]=true
	2534	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2535	then
	2536	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2537	printf "\n *** trying to use backup copy in \"$WORK\" "
	2538	cp $WORK/${frelin[$i]} ${localin[$i]}
	2539	else
	2540	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2541	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2542	printf "\n *** trying to get copy from archive"
	2543	actionin[$i]=ar
	2544	fi
	2545	else
	2546	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2547	then
	2548	mkdir ${localin[$i]}
[149]	2549	cd $tmp_data_catalog/${frelin[$i]}
	2550	for file in $(ls *)
	2551	do
	2552	ln $file $TEMPDIR/${localin[$i]}
	2553	done
	2554	cd $TEMPDIR
[1]	2555	got_tmp[$i]=true
	2556	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2557	then
	2558	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2559	printf "\n *** trying to use backup copy in \"$WORK\" "
	2560	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2561	else
	2562	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2563	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2564	printf "\n *** trying to get copy from archive"
	2565	actionin[$i]=ar
	2566	fi
	2567	fi
	2568	fi
	2569
	2570
	2571	# DATEI LIEGT AUF ARCHIV-SERVER
	2572	if [[ "${actionin[$i]}" = ar ]]
	2573	then
	2574
	2575	if [[ $files_for_pes = false ]]
	2576	then
	2577	printf "\n file will be restored from archive-system ($archive_system)!"
	2578	else
	2579	printf "\n directory will be restored from archive-system ($archive_system)!"
	2580	fi
	2581
	2582	file_restored=false
	2583
	2584	if [[ $archive_system = asterix ]]
	2585	then
	2586	do_stagein=true
	2587	(( stagein_anz = 0 ))
	2588	while [[ $do_stagein = true ]]
	2589	do
	2590	if [[ $files_for_pes = false ]]
	2591	then
	2592	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2593	else
	2594	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2595	fi
	2596	cat STAGEIN_OUTPUT
	2597	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2598	then
	2599	file_restored=true
	2600	do_stagein=false
	2601	else
	2602	(( stagein_anz = stagein_anz + 1 ))
	2603	if (( stagein_anz == 10 ))
	2604	then
	2605	printf "\n +++ stagein stoped after 10 tries"
	2606	locat=stage
	2607	exit
	2608	fi
	2609	printf "\n +++ restoring from archive failed, trying again:"
	2610	sleep 900
	2611	fi
	2612	done
	2613	elif [[ $archive_system = DMF ]]
	2614	then
	2615	if [[ $files_for_pes = false ]]
	2616	then
	2617	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2618	locat=DMF
	2619	exit
	2620	else
	2621	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2622	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2623	file_restored=true
	2624	fi
	2625	elif [[ $archive_system = tivoli ]]
	2626	then
	2627	if [[ $files_for_pes = false ]]
	2628	then
	2629	if [[ $localhost = ibmh ]]
	2630	then
	2631	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2632	else
	2633	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2634	fi
	2635	else
	2636	(( inode = 0 ))
	2637	while (( inode < nodes ))
	2638	do
	2639	if [[ $localhost = ibmh ]]
	2640	then
	2641	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2642	else
	2643	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2644	fi
	2645	(( inode = inode + 1 ))
	2646	done
	2647	fi
	2648	file_restored=true
	2649	elif [[ $archive_system = ut ]]
	2650	then
	2651	if [[ $files_for_pes = false ]]
	2652	then
	2653	cp $UT/${frelin[$i]} .
	2654	else
	2655	(( inode = 0 ))
	2656	while (( inode < nodes ))
	2657	do
	2658	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2659	(( inode = inode + 1 ))
	2660	done
	2661	fi
	2662	file_restored=true
	2663	else
	2664	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2665	locat=rearchive
	2666	exit
	2667	fi
	2668
	2669	if [[ $file_restored = true ]]
	2670	then
	2671
	2672	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2673	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2674	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2675	if [[ $files_for_pes = false ]]
	2676	then
	2677	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2678	else
	2679	mkdir $tmp_data_catalog/${frelin[$i]}
	2680	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2681	fi
	2682	got_tmp[$i]=true
	2683
	2684	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2685	mv ${frelin[$i]} ${localin[$i]}
	2686
	2687	fi
	2688	fi
	2689
	2690
	2691	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2692	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2693	then
	2694
	2695	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2696	then
	2697
	2698	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2699	printf "\n file will be provided for $numprocs processors"
	2700	mkdir ${localin[$i]}
	2701	ival=$numprocs
	2702	(( ii = 0 ))
	2703	while (( ii <= ival-1 ))
	2704	do
	2705	if (( ii < 10 ))
	2706	then
	2707	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2708	elif (( ii < 100 ))
	2709	then
	2710	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2711	elif (( ii < 1000 ))
	2712	then
	2713	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2714	else
	2715	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2716	fi
	2717	(( ii = ii + 1 ))
	2718	done
	2719
	2720	else
	2721
	2722	if [[ $files_for_pes = true ]]
	2723	then
	2724
	2725	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2726	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2727	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2728	# PER MOVE UMBENANNT WERDEN
	2729	printf "\n providing $numprocs files for the respective processors"
	2730	mkdir ${localin[$i]}
[183]	2731	if [[ $link_local_input = true ]]
	2732	then
	2733	printf " using ln -f\n"
	2734	cd ${absnamein[$i]}
	2735	for file in $(ls *)
	2736	do
	2737	ln -f $file ${localin[$i]}
	2738	done
	2739	cd $TEMPDIR
	2740	fi
	2741	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp -r"
	2742	if [[ ! -f "${localin[$i]}/_0000" ]]
	2743	then
	2744	if [[ $link_local_input = true ]]
	2745	then
	2746	printf " ln failed for .../_0000, using cp...\n"
	2747	fi
	2748	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2749	fi
[1]	2750
	2751	else
	2752	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
[183]	2753	if [[ $link_local_input = true ]]
	2754	then
	2755	printf " using ln -f\n"
	2756	ln -f ${absnamein[$i]} ${localin[$i]}
	2757	fi
	2758	# If "ln -f" fails of if "$link_local_input = false" do a normal "cp"
	2759	if [[ ! -f "${localin[$i]}" ]]
	2760	then
	2761	if [[ $link_local_input = true ]]
	2762	then
	2763	printf " ln failed, using cp...\n"
	2764	fi
	2765	cp ${absnamein[$i]} ${localin[$i]}
	2766	fi
[1]	2767	fi
	2768	fi
	2769	fi
	2770
	2771	done
	2772	if (( i != 0 ))
	2773	then
	2774	printf "\n$striche\n *** all INPUT-files provided \n"
	2775	fi
	2776
	2777
	2778	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2779	(( i = 0 ))
	2780	while (( i < iic ))
	2781	do
	2782	(( i = i + 1 ))
	2783	if (( i == 1 ))
	2784	then
	2785	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2786	fi
	2787	printf "\n >>> ${in_command[$i]}"
	2788	eval ${in_command[$i]}
	2789	if (( i == iic ))
	2790	then
	2791	printf "\n$striche\n"
	2792	fi
	2793	done
	2794
	2795
	2796	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2797	cpurest=${cpumax}.
	2798
	2799
[260]	2800	# START DVR STREAMING SERVER
	2801	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	2802	then
	2803	if [[ "$dvr_server" != "" ]]
	2804	then
	2805
	2806	printf "\n\n *** preparing the dvr streaming server configuration file"
	2807
	2808	# Check, if a dvr server is already running
	2809	running_dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config \| grep -v grep) \| cut -d" " -f2`
	2810	if [[ "$running_dvrserver_id" != "" ]]
	2811	then
	2812
[261]	2813	printf "\n\n +++ WARNING: A dvr server with id=$running_dvrserver_id is already running!"
[260]	2814	printf "\n This server is used instead starting a new one!"
[261]	2815	printf "\n If required, script \"process_dvr_output\" has to be run manually."
[260]	2816
	2817	else
	2818
	2819	# COPY CONFIGURATION FILE FOR STREAMING SERVER FROM REPOSITORY TO HERE
	2820	if [[ -f ${PALM_BIN}/.dvrserver.config ]]
	2821	then
	2822	cp ${PALM_BIN}/.dvrserver.config .
	2823
	2824	# Entering the BASEDIR, UID and GID into this file
	2825	user_id=`id -u`
	2826	group_id=`id -g`
	2827	# & is needed as seperator, because TEMPDIR contains /
	2828	sed "s&<replace by dvr data directory>&${TEMPDIR}&g" .dvrserver.config > .dvrserver.1
	2829	sed "s/<replace by user id>/$user_id/g" .dvrserver.1 > .dvrserver.2
	2830	sed "s/<replace by group id>/$group_id/g" .dvrserver.2 > .dvrserver.3
	2831	mv .dvrserver.3 .dvrserver.config
	2832	rm .dvrserver.1 .dvrserver.2
	2833
	2834	# Start dvr server in background, get his id and print on terminal
	2835	$dvr_server .dvrserver.config >> DVR_LOGFILE 2>&1 &
	2836	dvrserver_id=`echo $(ps -edaf \| grep .dvrserver.config) \| cut -d" " -f2`
	2837	printf "\n *** streaming server with id=$dvrserver_id is started in background"
	2838	local_dvrserver_running=.TRUE.
	2839	else
	2840	printf "\n +++ missing file \".dvrserver.config\" in directory:"
	2841	printf "\n \"$PALM_BIN\" "
	2842	locat=dvr
	2843	exit
	2844	fi
	2845
	2846	fi
	2847
	2848	else
	2849	printf "\n\n --- INFORMATIVE: no dvr streaming server will be started"
	2850	fi
	2851	fi
	2852
	2853
	2854	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2855	# LESEN VON PALM)
	2856	cat > ENVPAR << %%END%%
	2857	&envpar run_identifier = '$fname', host = '$localhost',
	2858	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
	2859	maximum_cpu_time_allowed = ${cpumax}.,
	2860	revision = '$global_revision',
	2861	local_dvrserver_running = $local_dvrserver_running /
	2862
	2863	%%END%%
	2864
	2865
[1]	2866	# PROGRAMMSTART
	2867	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2868	PATH=$PATH:$TEMPDIR
	2869
[359]	2870	# MPI debug option (argument checking, slows down execution due to increased latency)
	2871	if [[ "$mpi_debug" = true ]]
	2872	then
	2873	export MPI_CHECK_ARGS=1
	2874	printf "\n +++ MPI_CHECK_ARGS=$MPI_CHECK_ARGS"
	2875	fi
	2876
[1]	2877	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2878	then
	2879	if [[ "$ENVIRONMENT" = BATCH ]]
	2880	then
[211]	2881	if [[ $(echo $localhost \| cut -c1-5) != lcsgi ]]
	2882	then
	2883	printf "\n +++ debug is allowed in interactive mode only"
	2884	locat=debug
	2885	exit
	2886	fi
[1]	2887	fi
[5]	2888	if [[ $localhost = decalpha ]]
[1]	2889	then
	2890	dxladebug a.out
	2891	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2892	then
	2893
	2894	# SETUP THE IBM MPI ENVIRONMENT
	2895	export MP_SHARED_MEMORY=yes
	2896	export AIXTHREADS_SCOPE=S
	2897	export OMP_NUM_THREADS=$threads_per_task
	2898	export AUTHSTATE=files
	2899	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2900
	2901	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2902	export MP_ADAPTER_USE=shared
	2903	export MP_CPU_USE=multiple
	2904	export MP_TIMEOUT=1200
	2905
	2906	unset MP_TASK_AFFINITY
	2907
	2908	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2909	#(( ii = 1 ))
	2910	#while (( ii <= $numprocs ))
	2911	#do
	2912	# echo $localhost_realname >> hostfile
	2913	# (( ii = ii + 1 ))
	2914	#done
	2915	#export MP_HOSTFILE=hostfile
	2916
	2917	if [[ "$LOADLBATCH" = yes ]]
	2918	then
	2919	totalview poe a.out $ROPTS
	2920	else
	2921	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2922	export TVDSVRLAUNCHCMD=ssh
	2923	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2924	fi
[211]	2925	elif [[ $(echo $localhost \| cut -c1-5) = lcsgi ]]
	2926	then
	2927	# CURRENTLY NO DEBUGGER ON LCSGI
	2928	if [[ $run_coupled_model = true ]]
	2929	then
	2930	printf "\n +++ no debug in coupled mode available on \"$localhost\" "
	2931	locat=debug
	2932	exit
[223]	2933	else
	2934	echo "no_coupling" > runfile_atmos
[211]	2935	fi
	2936	(( ii = $numprocs / $threads_per_task ))
	2937	export OMP_NUM_THREADS=$threads_per_task
	2938	echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
	2939	if [[ $threads_per_task != 1 ]]
	2940	then
	2941	printf "\n threads per task: $threads_per_task"
	2942	fi
	2943	printf "\n\n"
[223]	2944	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	2945	then
	2946	# export MPI_LAUNCH_TIMEOUT=360
	2947	if [[ "$totalview" = true ]]
	2948	then
	2949	printf "\n running totalview debugger"
	2950	mpiexec_mpt -tv -n $ii ./a.out $ROPTS < runfile_atmos
	2951	else
	2952	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	2953	fi
	2954	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	2955	then
	2956	# ulimit -s 300000 # A too large stack size causes problems
	2957	# export MV2_NUM_PORTS=2
	2958	# export MV2_CPU_MAPPING=0:1:2:3
[362]	2959	if [[ "$totalview" = true ]]
	2960	then
	2961	printf "\n running totalview debugger"
	2962	mpiexec -tv ./a.out $ROPTS < runfile_atmos
	2963	else
	2964	mpiexec ./a.out $ROPTS < runfile_atmos
	2965	fi
[223]	2966	fi
[1]	2967	else
	2968	printf "\n +++ no debug available on \"$localhost\" "
	2969	printf "\n or not implemented in mrun so far"
	2970	locat=debug
	2971	exit
	2972	fi
	2973	else
	2974	if [[ -n $numprocs ]]
	2975	then
	2976	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2977	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2978	then
	2979	# SETUP THE IBM MPI ENVIRONMENT
[312]	2980	if [[ $host != ibmh ]]
	2981	then
	2982	export MP_SHARED_MEMORY=yes
	2983	export AIXTHREAD_SCOPE=S
	2984	export OMP_NUM_THREADS=$threads_per_task
	2985	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2986	export AUTHSTATE=files
	2987	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2988	# export MP_PRINTENV=yes
[1]	2989
[312]	2990	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2991	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2992	export MP_WAIT_MODE=poll
	2993	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2994	fi
[1]	2995	if [[ "$LOADLBATCH" = yes ]]
	2996	then
	2997	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2998	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	2999	then
[102]	3000	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	3001	else
[343]	3002	if [[ $run_coupled_model = false ]]
	3003	then
	3004	if [[ "$ocean_file_appendix" = true ]]
	3005	then
	3006	echo "precursor_ocean" > runfile_atmos
	3007	else
	3008	echo "precursor_atmos" > runfile_atmos
	3009	fi
	3010	else
	3011	(( iia = $numprocs_atmos / $threads_per_task ))
	3012	(( iio = $numprocs_ocean / $threads_per_task ))
	3013	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3014	printf "\n using $coupled_mode coupling"
	3015	printf "\n\n"
	3016	echo "coupled_run $iia $iio" > runfile_atmos
	3017	fi
	3018	poe ./a.out $ROPTS < runfile_atmos
[1]	3019	fi
	3020	else
	3021	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	3022	then
[102]	3023	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	3024	elif [[ $localhost = ibmy ]]
	3025	then
	3026	if [[ -f $hostfile ]]
	3027	then
	3028	cp $hostfile hostfile
	3029	else
	3030	(( ii = 1 ))
	3031	while (( ii <= $numprocs ))
	3032	do
	3033	echo $localhost_realname >> hostfile
	3034	(( ii = ii + 1 ))
	3035	done
	3036	fi
	3037	export MP_HOSTFILE=hostfile
[331]	3038	if [[ $run_coupled_model = false ]]
	3039	then
	3040	if [[ "$ocean_file_appendix" = true ]]
	3041	then
	3042	echo "precursor_ocean" > runfile_atmos
	3043	else
	3044	echo "precursor_atmos" > runfile_atmos
	3045	fi
	3046	else
	3047	(( iia = $numprocs_atmos / $threads_per_task ))
	3048	(( iio = $numprocs_ocean / $threads_per_task ))
	3049	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3050	printf "\n using $coupled_mode coupling"
	3051	printf "\n\n"
	3052	echo "coupled_run $iia $iio" > runfile_atmos
	3053	fi
	3054	./a.out -procs $tasks_per_node $ROPTS < runfile_atmos
	3055
[1]	3056	else
	3057	if [[ "$host_file" = "" ]]
	3058	then
	3059	printf "\n +++ no hostfile given in configuration file"
	3060	locat=config_file
	3061	exit
	3062	else
	3063	eval host_file=$host_file
	3064	fi
	3065	export MP_HOSTFILE=$host_file
[102]	3066	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	3067	fi
	3068	fi
[251]	3069	elif [[ $host = nech \|\| $host = necriam ]]
[1]	3070	then
	3071	(( ii = nodes ))
	3072	if [[ $ii = 1 ]]
	3073	then
	3074	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	3075	export MPIPROGINF=YES
[61]	3076	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	3077	echo "*** execution on single node with mpirun"
[102]	3078	mpirun -np $numprocs ./a.out $ROPTS
[1]	3079	else
	3080	(( i = 0 ))
	3081	while (( i < ii ))
	3082	do
	3083	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	3084	(( i = i + 1 ))
	3085	done
	3086
	3087	echo "#!/bin/sh" > mpi_exec_shell
	3088	echo " " >> mpi_exec_shell
	3089	echo "set -u" >> mpi_exec_shell
	3090	echo "F_ERRCNT=0" >> mpi_exec_shell
	3091	echo "MPIPROGINV=YES" >> mpi_exec_shell
	3092	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	3093	echo "cpurest=$cpurest" >> mpi_exec_shell
	3094	echo "fname=$fname" >> mpi_exec_shell
	3095	echo "localhost=$localhost" >> mpi_exec_shell
	3096	echo "return_addres=$return_addres" >> mpi_exec_shell
	3097	echo "return_username=$return_username" >> mpi_exec_shell
	3098	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	3099	echo "write_binary=$write_binary" >> mpi_exec_shell
	3100	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3101	echo " " >> mpi_exec_shell
	3102	echo "export F_ERRCNT" >> mpi_exec_shell
	3103	echo "export MPIPROGINV" >> mpi_exec_shell
	3104	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	3105	echo "export cpurest" >> mpi_exec_shell
	3106	echo "export fname" >> mpi_exec_shell
	3107	echo "export localhost" >> mpi_exec_shell
	3108	echo "export return_addres" >> mpi_exec_shell
	3109	echo "export return_username" >> mpi_exec_shell
	3110	echo "export tasks_per_node" >> mpi_exec_shell
	3111	echo "export write_binary" >> mpi_exec_shell
	3112	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	3113	echo " " >> mpi_exec_shell
[102]	3114	echo "exec ./a.out" >> mpi_exec_shell
[1]	3115
	3116	chmod u+x mpi_exec_shell
	3117	export MPIPROGINF=YES
	3118	mpirun -f multinode_config &
	3119	wait
	3120
	3121	fi
[82]	3122	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	3123	then
	3124
	3125	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	3126	# DOES NOT EXIST
[179]	3127	if [[ $host != lcsgih && $host != lcsgib ]]
[1]	3128	then
[179]	3129	if [[ -f $hostfile ]]
	3130	then
	3131	cp $hostfile hostfile
	3132	else
	3133	(( ii = 1 ))
	3134	while (( ii <= $numprocs / $threads_per_task ))
	3135	do
	3136	echo $localhost_realname >> hostfile
	3137	(( ii = ii + 1 ))
	3138	done
	3139	fi
	3140	eval zeile=\"`head -n $ii hostfile`\"
	3141	printf "\n *** running on: $zeile"
[1]	3142	fi
[179]	3143
[1]	3144	(( ii = $numprocs / $threads_per_task ))
	3145	export OMP_NUM_THREADS=$threads_per_task
[246]	3146	# echo "OMP_NUM_THREADS=$OMP_NUM_THREADS"
[1]	3147	if [[ $threads_per_task != 1 ]]
	3148	then
	3149	printf "\n threads per task: $threads_per_task"
	3150	fi
[102]	3151	if [[ $run_coupled_model = false ]]
[1]	3152	then
[291]	3153	if [[ "$ocean_file_appendix" = true ]]
	3154	then
	3155	echo "precursor_ocean" > runfile_atmos
	3156	else
	3157	echo "precursor_atmos" > runfile_atmos
	3158	fi
[102]	3159	printf "\n\n"
[179]	3160	if [[ $host = lcsgih \|\| $host = lcsgib ]]
[164]	3161	then
[221]	3162	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3163	then
	3164	# export MPI_LAUNCH_TIMEOUT=360
[223]	3165	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3166	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3167	then
	3168	# ulimit -s 300000 # A too large stack size causes problems
	3169	# export MV2_NUM_PORTS=2
	3170	# export MV2_CPU_MAPPING=0:1:2:3
[325]	3171	mpiexec -np $ii ./a.out $ROPTS < runfile_atmos
[221]	3172	fi
[179]	3173	elif [[ $host = lcxt4 ]]
	3174	then
[223]	3175	aprun -n $ii -N $tasks_per_node a.out $ROPTS < runfile_atmos
[164]	3176	else
[223]	3177	mpiexec -machinefile hostfile -n $ii a.out < runfile_atmos $ROPTS
[164]	3178	fi
[1]	3179	else
[164]	3180
[206]	3181	# currently there is no full MPI-2 support on ICE and XT4
	3182	(( iia = $numprocs_atmos / $threads_per_task ))
	3183	(( iio = $numprocs_ocean / $threads_per_task ))
	3184	printf "\n coupled run ($iia atmosphere, $iio ocean)"
	3185	printf "\n using $coupled_mode coupling"
[102]	3186	printf "\n\n"
[164]	3187
[206]	3188	if [[ $coupled_mode = "mpi2" ]]
[164]	3189	then
[206]	3190	echo "atmosphere_to_ocean $iia $iio" > runfile_atmos
	3191	echo "ocean_to_atmosphere $iia $iio" > runfile_ocean
	3192	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3193	then
[197]	3194
[221]	3195	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3196	then
	3197	# export MPI_LAUNCH_TIMEOUT=360
	3198	mpiexec_mpt -np $iia ./a.out $ROPTS < runfile_atmos &
	3199	mpiexec_mpt -np $iio ./a.out $ROPTS < runfile_ocean &
	3200	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3201	then
	3202	# ulimit -s 300000 # A too large stack size causes problems
	3203	# export MV2_NUM_PORTS=2
	3204	# export MV2_CPU_MAPPING=0:1:2:3
	3205	mpiexec -n $iia ./a.out $ROPTS < runfile_atmos &
	3206	mpiexec -n $iio ./a.out $ROPTS < runfile_ocean &
	3207	fi
[197]	3208
[206]	3209	elif [[ $host = lcxt4 ]]
	3210	then
[197]	3211
[206]	3212	aprun -n $iia -N $tasks_per_node a.out < runfile_atmos $ROPTS &
	3213	aprun -n $iio -N $tasks_per_node a.out < runfile_ocean $ROPTS &
	3214
	3215	else
	3216	# WORKAROUND BECAUSE mpiexec WITH -env option IS NOT AVAILABLE ON SOME SYSTEMS
	3217	mpiexec -machinefile hostfile -n $iia a.out $ROPTS < runfile_atmos &
	3218	mpiexec -machinefile hostfile -n $iio a.out $ROPTS < runfile_ocean &
	3219	# mpiexec -machinefile hostfile -n $iia -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	3220	# mpiexec -machinefile hostfile -n $iio -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
	3221	fi
	3222	wait
	3223
[164]	3224	else
	3225
[206]	3226	echo "coupled_run $iia $iio" > runfile_atmos
	3227	if [[ $host = lcsgih \|\| $host = lcsgib ]]
	3228	then
	3229
[221]	3230	if [[ $( echo $mpilib \| cut -c1-3 ) = mpt ]]
	3231	then
	3232	# export MPI_LAUNCH_TIMEOUT=360
	3233	mpiexec_mpt -np $ii ./a.out $ROPTS < runfile_atmos
	3234	elif [[ $( echo $mpilib \| cut -c1-3 ) = mva ]]
	3235	then
	3236	# ulimit -s 300000 # A too large stack size causes problems
	3237	# export MV2_NUM_PORTS=2
	3238	# export MV2_CPU_MAPPING=0:1:2:3
	3239	mpiexec ./a.out $ROPTS < runfile_atmos
	3240	fi
[206]	3241
	3242	elif [[ $host = lcxt4 ]]
	3243	then
	3244
	3245	aprun -n $ii -N $tasks_per_node a.out < runfile_atmos $ROPTS
	3246
	3247	fi
	3248	wait
[164]	3249	fi
[102]	3250
	3251	# if [[ $scirocco = true ]]
	3252	# then
	3253	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	3254	# else
	3255	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	3256	# fi
[206]	3257	fi
[1]	3258	elif [[ $host = decalpha ]]
	3259	then
[102]	3260	dmpirun -np $numprocs a.out $ROPTS
[1]	3261	elif [[ $host = lctit ]]
	3262	then
	3263	export runfile=runfile.$kennung
	3264
	3265	echo "cd $PWD" > $runfile
	3266	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	3267	echo "export cpurest=$cpurest" >> $runfile
	3268	echo "export fname=$fname" >> $runfile
	3269	echo "export localhost=$localhost" >> $runfile
	3270	echo "export return_addres=$return_addres" >> $runfile
	3271	echo "export return_username=$return_username" >> $runfile
	3272	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	3273	echo "export write_binary=$write_binary" >> $runfile
	3274	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	3275	echo "./a.out" >> $runfile
	3276	chmod u+x $runfile
	3277
	3278	if [[ "$QUEUE" = interactive ]]
	3279	then
[102]	3280	mpirun -np $numprocs a.out $ROPTS
[1]	3281	else
[127]	3282	(( mem_tsubame = $memory / 1024.0 ))
	3283	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	3284	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[265]	3285	# /n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
	3286	n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	3287	fi
	3288
	3289	rm $runfile
	3290	else
[102]	3291	mpprun -n $numprocs a.out $ROPTS
[1]	3292	fi
	3293	[[ $? != 0 ]] && execution_error=true
	3294
	3295
	3296	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	3297	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	3298	then
	3299	apprentice
	3300	fi
	3301	else
[102]	3302	a.out $ROPTS
[1]	3303	fi
	3304	fi
	3305	if [[ $? != 0 \|\| $execution_error = true ]]
	3306	then
	3307
	3308	# ABBRUCH BEI LAUFZEITFEHLER
[102]	3309	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3310	printf "\n +++ runtime error occured"
	3311	locat=execution
	3312	exit
	3313	else
[102]	3314	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	3315	printf "\n$striche\n *** execution finished \n"
[260]	3316
[261]	3317	# Stop the dvr streaming server and process the dvr output in order
	3318	# to create dvrs- and html-files containing all streams
[260]	3319	if [[ "$dvrserver_id" != "" ]]
	3320	then
	3321	kill $dvrserver_id
	3322	printf "\n *** dvr server with id=$dvrserver_id has been stopped"
[261]	3323
[262]	3324	# If there is a directory, data have been output by the
	3325	# streaming server. Otherwise, user has chosen dvrp_output=local
	3326	if [[ -d DATA_DVR ]]
	3327	then
[261]	3328
[262]	3329	# Add the current dvr configuration file to the dvr output
	3330	# directory
	3331	cp .dvrserver.config DATA_DVR
	3332
	3333	# Process the dvr output (option -s for also generating
	3334	# sequence mode data)
	3335	process_dvr_output -d DATA_DVR -f $fname -s
	3336
	3337	else
	3338
	3339	# Process the local output
	3340	process_dvr_output -l -d DATA_DVR -f $fname
	3341
	3342	fi
	3343
	3344	elif [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	3345	then
	3346
	3347	# Process dvr output generated in local mode (dvrp_output=local)
	3348	process_dvr_output -l -d DATA_DVR -f $fname
	3349
[260]	3350	fi
[1]	3351	fi
	3352
	3353
	3354
	3355	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	3356	(( i = 0 ))
	3357	while (( i < ioc ))
	3358	do
	3359	(( i = i + 1 ))
	3360	if (( i == 1 ))
	3361	then
	3362	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	3363	fi
	3364	printf "\n >>> ${out_command[$i]}"
	3365	eval ${out_command[$i]}
	3366	if (( i == ioc ))
	3367	then
	3368	printf "\n$striche\n"
	3369	fi
	3370	done
	3371
	3372
	3373	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	3374	if [[ $do_trace = true ]]
	3375	then
	3376	printf "\n\n"
	3377	ls -al
	3378	fi
	3379
	3380
	3381
	3382	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	3383	(( i = 0 ))
	3384	while (( i < iout ))
	3385	do
	3386	(( i = i + 1 ))
	3387	if (( i == 1 ))
	3388	then
	3389	printf "\n\n *** saving OUTPUT-files:\n$striche"
	3390	fi
	3391
	3392	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	3393	files_for_pes=false; filetyp=file
	3394	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	3395	then
	3396	files_for_pes=true; filetyp=directory
	3397	actionout[$i]=""
	3398	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	3399	then
	3400	actionout[$i]=""
	3401	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	3402	then
	3403	files_for_pes=true; filetyp=directory
	3404	actionout[$i]="ar"
	3405	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	3406	then
	3407	actionout[$i]="ar"
	3408	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	3409	then
	3410	files_for_pes=true; filetyp=directory
	3411	actionout[$i]="fl"
	3412	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	3413	then
	3414	actionout[$i]="fl"
	3415	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	3416	then
	3417	files_for_pes=true; filetyp=directory
	3418	actionout[$i]="tr"
	3419	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	3420	then
	3421	actionout[$i]="tr"
	3422	fi
	3423
	3424	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	3425	then
	3426	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
[260]	3427	elif [[ ! -d ${localout[$i]} && $files_for_pes = true ]]
[1]	3428	then
	3429	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	3430	else
	3431
	3432
	3433	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3434	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3435	# REMOTE-RECHNUNGEN
	3436	if [[ "${actionout[$i]}" = tr ]]
	3437	then
	3438	if [[ $localhost != $fromhost ]]
	3439	then
	3440	if [[ $files_for_pes = false ]]
	3441	then
	3442	cps=""
	3443	cst=""
	3444	else
	3445	cps=-c
	3446	cst="/"
	3447	fi
[325]	3448	if [[ $localhost = ibmb \|\| $localhost = nech ]]
[1]	3449	then
	3450
	3451	# TRANSFER IN EIGENSTAENDIGEM JOB
	3452	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3453	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3454	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3455	if [[ $files_for_pes = false ]]
	3456	then
	3457	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3458	else
	3459	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	3460	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	3461	fi
	3462
	3463	echo "set -x" > transfer_${localout[$i]}
	3464	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3465
	3466	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	3467	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	3468	printf "\n or higher cycle\n"
	3469	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3470
[1]	3471	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3472
	3473	if [[ $localhost = nech ]]
	3474	then
[82]	3475	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3476	else
	3477	if [[ "$LOGNAME" = b323013 ]]
	3478	then
[164]	3479	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3480	else
[164]	3481	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3482	fi
	3483	fi
	3484
	3485	else
	3486
	3487	# TRANSFER INNERHALB DIESES JOBS
	3488	transfer_failed=false
[82]	3489	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	3490	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	3491	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3492	[[ $? != 0 ]] && transfer_failed=true
[1]	3493
	3494	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3495	# LOKALER MASCHINE ANLEGEN
	3496	if [[ $transfer_failed = true ]]
	3497	then
	3498	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3499	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3500
	3501	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3502	# ANLEGEN.
	3503	eval local_catalog=${pathout[$i]}
	3504	if [[ ! -d $local_catalog ]]
	3505	then
	3506	printf " *** local directory does not exist. Trying to create:\n"
	3507	printf " $local_catalog \n"
	3508	mkdir -p $local_catalog
	3509	fi
	3510	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3511	transfer_problems=true
	3512	fi
	3513	fi
	3514	else
	3515
	3516	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3517	actionout[$i]=""
	3518	fi
	3519	fi
	3520
	3521
	3522	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3523	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3524	# REMOTE-RECHNUNGEN
	3525	if [[ "${actionout[$i]}" = tra ]]
	3526	then
	3527	if [[ $localhost != $fromhost ]]
	3528	then
	3529	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3530	then
	3531
	3532	# TRANSFER IN EIGENSTAENDIGEM JOB
	3533	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3534	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3535	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3536	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3537
	3538	echo "set -x" > transfer_${localout[$i]}
	3539	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3540
	3541	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3542	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3543	printf "\n or higher cycle\n"
	3544	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3545
[1]	3546	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3547
	3548	if [[ $localhost = nech ]]
	3549	then
[82]	3550	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3551	else
	3552	if [[ $LOGNAME = b323013 ]]
	3553	then
[164]	3554	subjob -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3555	else
[164]	3556	subjob -d -v -q c1 -X 0 -m 1000 -t 900 -c $job_catalog transfer_${localout[$i]}
[1]	3557	fi
	3558	fi
	3559
	3560	else
	3561
	3562	# TRANSFER INNERHALB DIESES JOBS
	3563	transfer_failed=false
[82]	3564	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3565	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3566	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3567	[[ $? != 0 ]] && transfer_failed=true
[1]	3568
	3569	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3570	# LOKALER MASCHINE ANLEGEN
	3571	if [[ $transfer_failed = true ]]
	3572	then
	3573	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3574	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3575
	3576	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3577	# ANLEGEN
	3578	eval local_catalog=${pathout[$i]}
	3579	if [[ ! -d $local_catalog ]]
	3580	then
	3581	printf " *** local directory does not exist. Trying to create:\n"
	3582	printf " $local_catalog \n"
	3583	mkdir -p $local_catalog
	3584	fi
	3585
	3586	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3587	transfer_problems=true
	3588	fi
	3589	fi
	3590	else
	3591
	3592	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3593	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3594	actionout[$i]=a
	3595	fi
	3596	fi
	3597
	3598
	3599	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3600	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3601	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3602	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3603	if [[ "${actionout[$i]}" = fl ]]
	3604	then
	3605	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3606	chmod g+rx $tmp_data_catalog
	3607	if [[ $files_for_pes = false ]]
	3608	then
	3609	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3610	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3611	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3612	else
	3613	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3614	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3615	mkdir $tmp_data_catalog/${frelout[$i]}
[149]	3616	cd ${localout[$i]}
	3617	for file in $(ls *)
	3618	do
	3619	ln -f $file $tmp_data_catalog/${frelout[$i]}
	3620	done
	3621	cd $TEMPDIR
[1]	3622	fi
	3623
	3624
	3625	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3626	if [[ $store_on_archive_system = true ]]
	3627	then
	3628
	3629	if [[ $archive_system = asterix ]]
	3630	then
	3631	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3632	if [[ $files_for_pes = false ]]
	3633	then
	3634	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3635	else
	3636	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3637	fi
	3638	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3639	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3640	echo "then" >> archive_${frelout[$i]}
	3641	echo " do_stageout=false" >> archive_${frelout[$i]}
	3642	echo "else" >> archive_${frelout[$i]}
	3643	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3644	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3645	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3646	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3647	if [[ $files_for_pes = false ]]
	3648	then
	3649	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3650	else
	3651	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3652	fi
	3653	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3654	echo "fi" >> archive_${frelout[$i]}
	3655	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3656	elif [[ $archive_system = DMF ]]
	3657	then
	3658	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3659	if [[ $files_for_pes = false ]]
	3660	then
	3661	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3662	locat=DMF
	3663	exit
	3664	else
	3665	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3666	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3667	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3668	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3669	fi
	3670	elif [[ $archive_system = tivoli ]]
	3671	then
	3672	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3673	if [[ $files_for_pes = false ]]
	3674	then
	3675	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3676	echo "set -x" >> archive_${frelout[$i]}
	3677	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3678	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3679	else
	3680
	3681	echo "set -x" >> archive_${frelout[$i]}
	3682	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3683	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3684	cd $tmp_data_catalog
	3685	all_files=`ls -1 ${frelout[$i]}/*`
	3686	cd - > /dev/null
	3687	(( inode = 0 ))
	3688	(( tp1 = tasks_per_node + 1 ))
	3689	while (( inode < nodes ))
	3690	do
	3691	# echo "*** all_files = \"$all_files\" "
	3692	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3693	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3694	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3695	# echo "*** files = \"$files\" "
	3696	# echo "*** all_files = \"$all_files\" "
	3697	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3698	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3699	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3700	(( inode = inode + 1 ))
	3701	done
	3702	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3703	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3704	fi
	3705	elif [[ $archive_system = ut ]]
	3706	then
	3707	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3708	if [[ $files_for_pes = false ]]
	3709	then
	3710	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3711	echo "set -x" >> archive_${frelout[$i]}
	3712	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3713	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3714	else
	3715
	3716	echo "set -x" >> archive_${frelout[$i]}
	3717	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3718	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3719	cd $tmp_data_catalog
	3720	all_files=`ls -1 ${frelout[$i]}/*`
	3721	cd - > /dev/null
	3722	(( inode = 0 ))
	3723	(( tp1 = tasks_per_node + 1 ))
	3724	while (( inode < nodes ))
	3725	do
	3726	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3727	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3728	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3729	(( inode = inode + 1 ))
	3730	done
	3731	fi
	3732	elif [[ $archive_system = none ]]
	3733	then
	3734	printf " +++ archiving on $localhost not available!\n"
	3735	fi
	3736
	3737	if [[ $archive_system != none ]]
	3738	then
	3739	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3740	then
[164]	3741	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
	3742	subjob -v -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3743	elif [[ $localhost = nech ]]
	3744	then
[82]	3745	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3746	fi
	3747	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3748	fi
	3749	else
	3750	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3751	fi
	3752
	3753
	3754	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3755	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3756	if [[ $files_for_pes = false ]]
	3757	then
	3758	cat /dev/null > ${pathout[$i]}
	3759	else
	3760	mkdir -p ${pathout[$i]}
	3761	fi
	3762
	3763	fi
	3764
	3765
	3766	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3767	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3768	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3769	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3770	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3771	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3772	if [[ "${actionout[$i]}" = ar ]]
	3773	then
	3774	if [[ $files_for_pes = false ]]
	3775	then
	3776	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3777	printf "\n ${pathout[$i]}"
	3778	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3779	else
	3780	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3781	printf "\n ${pathout[$i]}"
	3782	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3783	fi
	3784	mv ${localout[$i]} ${frelout[$i]}
	3785
	3786	file_saved=false
	3787
	3788	if [[ $archive_system = asterix ]]
	3789	then
	3790	do_stageout=true
	3791	(( stageout_anz = 0 ))
	3792	while [[ $do_stageout = true ]]
	3793	do
	3794	if [[ $files_for_pes = false ]]
	3795	then
	3796	stageout ${frelout[$i]} > STAGE_OUTPUT
	3797	else
	3798	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3799	fi
	3800	cat STAGE_OUTPUT
	3801	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3802	then
	3803	file_saved=true
	3804	do_stageout=false
	3805	else
	3806	if [[ $files_for_pes = false ]]
	3807	then
	3808	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3809	else
	3810	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3811	fi
	3812	(( stageout_anz = stageout_anz + 1 ))
	3813	if (( stageout_anz == 10 ))
	3814	then
	3815	printf "\n +++ stoped after 10 unsuccessful tries!"
	3816	archive_save=false
	3817	do_stageout=false
	3818	else
	3819	printf "\n *** new try to store on archive after 15 min:"
	3820	sleep 900
	3821	fi
	3822	fi
	3823	done
	3824	elif [[ $archive_system = DMF ]]
	3825	then
	3826	if [[ $files_for_pes = false ]]
	3827	then
	3828	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3829	locat=DMF
	3830	exit
	3831	else
	3832	rm -rf $ARCHIVE/${frelout[$i]}
	3833	cp -r ${frelout[$i]} $ARCHIVE
	3834	fi
	3835	file_saved=true
	3836	elif [[ $archive_system = tivoli ]]
	3837	then
	3838	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3839	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3840	# GELEGT WERDEN
	3841	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3842	chmod g+rx $tmp_data_catalog
	3843	if [[ $files_for_pes = false ]]
	3844	then
	3845	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3846	else
	3847	mkdir $tmp_data_catalog/${frelout[$i]}
	3848	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3849	fi
	3850
	3851	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3852	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3853	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3854	if [[ $files_for_pes = false ]]
	3855	then
	3856	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3857	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3858	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3859	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3860	else
	3861	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3862	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3863	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3864	fi
	3865
[164]	3866	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 -c $job_catalog archive_${frelout[$i]}
[1]	3867	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3868	file_saved=true
	3869
	3870	elif [[ $archive_system = ut ]]
	3871	then
	3872	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3873	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3874	# GELEGT WERDEN
	3875	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3876	chmod g+rx $tmp_data_catalog
	3877	if [[ $files_for_pes = false ]]
	3878	then
	3879	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3880	else
	3881	mkdir $tmp_data_catalog/${frelout[$i]}
	3882	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3883	fi
	3884
	3885	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3886	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3887	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3888	if [[ $files_for_pes = false ]]
	3889	then
	3890	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3891	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3892	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3893	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3894	else
	3895	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3896	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3897	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3898	fi
	3899
[82]	3900	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3901	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3902	file_saved=true
	3903
	3904	else
	3905	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3906	archive_save=false
	3907	fi
	3908	if [[ $file_saved = true ]]
	3909	then
	3910	if [[ $files_for_pes = false ]]
	3911	then
	3912	cat /dev/null > ${pathout[$i]}
	3913	else
	3914	mkdir -p ${pathout[$i]}
	3915	fi
	3916	fi
	3917	fi
	3918
	3919	# APPEND AUF LOKALER MASCHINE
	3920	if [[ "${actionout[$i]}" = "a" ]]
	3921	then
	3922	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3923	cat ${localout[$i]} >> ${pathout[$i]}
	3924	fi
	3925
	3926	# KOPIEREN AUF LOKALER MASCHINE
	3927	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3928	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3929	then
	3930
	3931	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3932	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3933	then
	3934	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
[149]	3935	if [[ $link_local_output = true ]]
	3936	then
	3937	printf " using ln -f\n"
	3938	ln -f ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3939	fi
	3940	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3941	if [[ ! -f "${pathout[$i]}.${extout[$i]}" ]]
	3942	then
	3943	if [[ $link_local_output = true ]]
	3944	then
	3945	printf " ln failed, using cp...\n"
	3946	fi
	3947	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3948	fi
[1]	3949	else
	3950	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
[149]	3951	if [[ $link_local_output = true ]]
	3952	then
	3953	printf " using ln -f\n"
	3954	ln -f ${localout[$i]} ${pathout[$i]}
	3955	fi
	3956	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp"
	3957	if [[ ! -f "${pathout[$i]}" ]]
	3958	then
	3959	if [[ $link_local_output = true ]]
	3960	then
	3961	printf " ln failed, using cp...\n"
	3962	fi
	3963	cp ${localout[$i]} ${pathout[$i]}
	3964	fi
[1]	3965	fi
	3966
	3967	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3968	then
	3969
	3970	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3971	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3972	# WIRD DANN KOPIERT
	3973	# PER MOVE UMBENANNT WERDEN
	3974	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
[149]	3975	if [[ $link_local_output = true ]]
	3976	then
	3977	printf " using ln -f\n"
	3978	mkdir ${pathout[$i]}
	3979	cd ${localout[$i]}
	3980	for file in $(ls *)
	3981	do
	3982	ln -f $file ${pathout[$i]}
	3983	done
	3984	cd $TEMPDIR
	3985	fi
	3986	# If "ln -f" fails of if "$link_local_output = false" do a normal "cp -r"
	3987	if [[ ! -f "${pathout[$i]}/_0000" ]]
	3988	then
	3989	if [[ $link_local_output = true ]]
	3990	then
	3991	printf " ln failed for .../_0000, using cp...\n"
	3992	fi
	3993	cp -r ${localout[$i]} ${pathout[$i]}
	3994	fi
[1]	3995
	3996	fi
	3997	fi
	3998	done
	3999	if (( i != 0 ))
	4000	then
	4001	if [[ $transfer_problems = true ]]
	4002	then
	4003	printf "\n$striche\n *** OUTPUT-files saved"
	4004	printf "\n +++ WARNING: some data transfers failed! \n"
	4005	else
	4006	printf "\n$striche\n *** all OUTPUT-files saved \n"
	4007	fi
	4008	fi
	4009
	4010
	4011	# EVENTUELL FOLGEJOB STARTEN
	4012	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	4013	if [[ -f CONTINUE_RUN ]]
	4014	then
	4015
	4016	if [[ $archive_save = true ]]
	4017	then
	4018
	4019	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	4020	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	4021	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	4022	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	4023	# HANDEN
	4024	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	4025	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	4026	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	4027	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	4028	then
	4029	mc=`echo $mc \| sed 's/#/f/g'`
	4030	fi
	4031
	4032
	4033	# JOB STARTEN
	4034	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	4035	echo " $mc"
	4036	printf "\n$striche\n"
	4037	if [[ $localhost != $fromhost ]]
	4038	then
	4039
[204]	4040	if [[ $localhost = lcsgih \|\| $localhost = lcsgib \|\| $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
[1]	4041	then
	4042	echo "*** ssh will be used to initiate restart-runs!"
	4043	echo " return_addres=\"$return_addres\" "
	4044	echo " return_username=\"$return_username\" "
	4045	if [[ $return_addres = 172.20.25.41 ]]
	4046	then
	4047	# WORKAROUND AUF SCIROCCO AM TIT
[33]	4048	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	4049	else
[33]	4050	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	4051	fi
	4052	else
	4053	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	4054	locat=restart; exit
	4055	fi
	4056
	4057	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	4058	# DER AKTUELLE JOB ENDET
	4059	sleep 30
	4060
	4061	else
	4062
	4063	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	4064	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	4065	cd $LOCAL_PWD
[108]	4066	if [[ $localhost = lcfimm ]]
	4067	then
	4068	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	4069	else
	4070	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	4071	fi
[1]	4072	cd - > /dev/null
	4073	fi
	4074	printf "\n$striche\n *** restart-run initiated \n"
	4075
	4076
	4077	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	4078	# GEHOLT WORDEN SIND, LOESCHEN
	4079	(( i = 0 ))
	4080	while (( i < iin ))
	4081	do
	4082	(( i = i + 1 ))
	4083	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	4084	then
	4085	rm -r $tmp_data_catalog/${frelin[$i]}
	4086	fi
	4087	done
	4088
	4089	else
	4090
	4091	printf "\n +++ no restart-run possible, since errors occured"
	4092	printf "\n during the archive process"
	4093	fi
	4094
	4095	fi
	4096
	4097
	4098
	4099	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
[352]	4100	if [[ "$email_notification" != "none" ]]
[1]	4101	then
	4102
	4103	if [[ $localhost != $fromhost ]]
	4104	then
	4105	if [[ -f CONTINUE_RUN ]]
	4106	then
	4107	echo "PALM restart run necessary" > email_text
	4108	echo "description header of actual run:" >> email_text
	4109	cat CONTINUE_RUN >> email_text
	4110	echo "mrun-command to restart:" >> email_text
	4111	echo "$mc" >> email_text
	4112	else
	4113	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	4114	fi
	4115	mail $email_notification < email_text
	4116	printf "\n *** email notification sent to \"$email_notification\" "
	4117	fi
	4118	fi
	4119
	4120
	4121
	4122	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	4123	cd $HOME
	4124	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	4125
	4126	else
	4127
	4128
	4129	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	4130	# CHENDE AKTIONEN DURCHGEFUEHRT
	4131
	4132	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	4133	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	4134	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	4135	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	4136	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	4137	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	4138	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	4139	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	4140	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	4141	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	4142	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	4143	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	4144	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	4145	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	4146	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	4147	if [[ $use_openmp = true ]]
	4148	then
	4149	mrun_com=${mrun_com}" -O"
	4150	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	4151	else
	4152	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	4153	fi
	4154	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	4155	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	4156	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	4157	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	4158	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[291]	4159	[[ "$ocean_file_appendix" = true ]] && mrun_com=${mrun_com}" -y"
[206]	4160	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y \"$coupled_dist\""
[1]	4161	if [[ $do_remote = true ]]
	4162	then
	4163	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	4164	fi
	4165
	4166
	4167	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	4168	jobfile=jobfile.$RANDOM
	4169
	4170
	4171	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	4172	echo "mkdir $TEMPDIR" >> $jobfile
	4173	echo "cd $TEMPDIR" >> $jobfile
	4174
	4175
	4176	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	4177	if [[ $do_trace = true ]]
	4178	then
	4179	echo "set -x" >> $jobfile
	4180	else
	4181	echo "set +vx" >> $jobfile
	4182	fi
	4183
	4184
[191]	4185	# BEREITSTELLUNG VON QUELLTEXTEN, MRUN-SCRIPTS UND KONFIGURATIONS-
	4186	# DATEI FUER DEN JOB
	4187	if [[ $( echo $host \| cut -c1-5 ) = lcsgi ]]
[1]	4188	then
	4189
[191]	4190	# KONFIGURATIONSDATEI UND MRUN_SCRIPT IN DAS SOURCE-VERZEICHNIS
	4191	# KOPIEREN
	4192	if [[ $restart_run != true ]]
	4193	then
	4194	cp $config_file $working_directory/SOURCES_FOR_RUN_$fname
	4195	cp ${PALM_BIN}/$mrun_script_name $working_directory/SOURCES_FOR_RUN_$fname
	4196	fi
[1]	4197
[191]	4198	# SOURCE-VERZEICHNIS VOM LOKALEN RECHNER PER SCP TRANSFERIEREN
[193]	4199	echo "set -x" >> $jobfile
	4200	echo "scp -r $return_username@$return_addres:$working_directory/SOURCES_FOR_RUN_$fname ." >> $jobfile
	4201	echo "export SOURCES_COMPLETE=true" >> $jobfile
[1]	4202
[193]	4203	# QUELLTEXTE, MRUN-SCRIPT UND KONFIGURATIONSDATEI IN DAS AKTUELLE
	4204	# ARBEITSVERZEICHNIS VERSCHIEBEN
	4205	echo "mv SOURCES_FOR_RUN_$fname/$config_file . " >> $jobfile
	4206	echo "mv SOURCES_FOR_RUN_$fname/$mrun_script_name . " >> $jobfile
	4207	echo "execute_mrun=true" >> $jobfile
	4208	echo " " >> $jobfile
	4209
[191]	4210	else
	4211
	4212	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	4213	# SOWIE GEGEBENENFALLS DES MAKEFILES
	4214	if [[ $do_compile = true ]]
	4215	then
	4216
	4217	source_catalog=SOURCES_FOR_RUN_$fname
	4218
	4219	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	4220	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	4221	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	4222	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	4223	echo "export SOURCES_COMPLETE=true" >> $jobfile
	4224	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	4225
	4226	for filename in $source_list
	4227	do
	4228	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4229	echo "cat > $filename << \"%END%\"" >> $jobfile
	4230	cat $source_catalog/$filename >> $jobfile
	4231	echo " " >> $jobfile
	4232	echo "%END%" >> $jobfile
	4233	echo " " >> $jobfile
	4234	done
	4235
[1]	4236	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
[191]	4237	echo "cat > Makefile << \"%END%\"" >> $jobfile
	4238	cat $source_catalog/Makefile >> $jobfile
[1]	4239	echo " " >> $jobfile
	4240	echo "%END%" >> $jobfile
	4241	echo " " >> $jobfile
	4242
[191]	4243	echo "cd - > /dev/null" >> $jobfile
[1]	4244
[191]	4245	fi
[1]	4246
	4247
[191]	4248	# ABSPEICHERN DER KONFIGURATIONSDATEI
	4249	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4250	echo "cat > $config_file << \"%END%\"" >> $jobfile
	4251	cat $config_file >> $jobfile
	4252	echo "%END%" >> $jobfile
	4253	echo " " >> $jobfile
[1]	4254
	4255
[191]	4256	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	4257	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	4258	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
	4259	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
	4260	echo "%END%" >> $jobfile
	4261	if [[ $host = lctit ]]
	4262	then
	4263	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	4264	echo "mv mrun_new $mrun_script_name" >> $jobfile
	4265	fi
	4266	echo "chmod u+x $mrun_script_name" >> $jobfile
	4267	echo "execute_mrun=true" >> $jobfile
	4268	echo " " >> $jobfile
[1]	4269
	4270	fi
	4271
[191]	4272
[1]	4273	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	4274	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	4275	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	4276	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	4277	if [[ $do_remote = true ]]
	4278	then
	4279	(( i = 0 ))
	4280	while (( i < iin ))
	4281	do
	4282	(( i = i + 1 ))
	4283	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	4284	if [[ "${transin[$i]}" = job ]]
	4285	then
	4286	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	4287	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	4288	echo " " >> $jobfile
	4289	echo "%END%" >> $jobfile
	4290	else
[82]	4291	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	4292	fi
	4293
	4294	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	4295	echo "if [[ \$? = 1 ]]" >> $jobfile
	4296	echo "then" >> $jobfile
	4297	echo " echo \" \" " >> $jobfile
	4298	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	4299	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	4300	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	4301	echo " execute_mrun=false" >> $jobfile
	4302	echo "fi" >> $jobfile
	4303	done
	4304	fi
	4305
	4306	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	4307	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	4308	echo "LOCAL_PWD=$working_directory" >> $jobfile
	4309	echo "export LOCAL_PWD" >> $jobfile
	4310
	4311	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	4312	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	4313	echo "export LOCAL_MRUN_PATH" >> $jobfile
	4314
[66]	4315	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	4316	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	4317	then
	4318	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	4319	fi
[1]	4320
	4321	# MRUN AUF ZIELRECHNER AUFRUFEN
	4322	echo "set -x" >> $jobfile
	4323	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	4324
	4325	echo 'ls -al; echo `pwd`' >> $jobfile
	4326	echo "cd \$HOME" >> $jobfile
	4327	echo "rm -rf $TEMPDIR" >> $jobfile
	4328
	4329
	4330
	4331
	4332	# JOB PER SUBJOB STARTEN
	4333	if [[ $silent = false ]]
	4334	then
	4335	printf "\n "
	4336	else
	4337	printf "\n\n"
	4338	fi
	4339
[352]	4340	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v -c $job_catalog -e $email_notification $jobfile
[1]	4341	rm -rf $jobfile
	4342
	4343
	4344	fi # ENDE REMOTE-TEIL
	4345
	4346
	4347
	4348	# ENDE DER PROZEDUR

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