Home

Context Navigation

mrun @ 134

Last change on this file since 134 was 129, checked in by letzel, 17 years ago

prognostic_equations include the respective wall_*flux in the parameter list of
calls of diffusion_s. Same as before, only the values of wall_heatflux(0:4)
can be assigned. At present, wall_humidityflux, wall_qflux, wall_salinityflux,
wall_scalarflux are kept zero. diffusion_s uses the respective wall_*flux
instead of wall_heatflux. This update serves two purposes:

it avoids errors in calculations with humidity/scalar/salinity and prescribed

non-zero wall_heatflux,

it prepares PALM for a possible assignment of wall fluxes of

humidity/scalar/salinity in a future release.

Bugfix: assignment of fluxes at walls

Updates to documentation:
chapter_4.2.html#mode_dvrp
chapter_3.5.4.html#time_series

Default for mrun options -q and -n is "sla3" for lctit. Queues bes1 and bes2
removed. DOC/misc/Tsubame.html updated.

Modified default paths (/work/...) for lctit in .mrun.config.default

Property svn:keywords set to Rev

File size: 139.9 KB

Rev	Line
[71]	1	#!/bin/ksh
[66]	2	# mrun - Plot-Shellskript
	3	# $Id: mrun 61 2007-03-12 05:42:06Z raasch $
[1]	4
	5	# Prozedur zum Starten von Modellaeufen
	6
	7	# letzte Aenderung:
	8	# 03/03/94 - Siggi - Entwicklungsbeginn
	9	# 21/03/94 - Siggi - Entwicklungsabschluss (Version 1.0)
	10	# 09/12/94 - Siggi - allexport unterbunden; statt dessen werden jetzt ein-
	11	# zelne Variable exportiert. Dies ist noetig, weil an-
	12	# sonsten irgendein Speicher ueberlaeuft und von mrun
	13	# aufgerufene Programme (z.B. stageout) mit Fehlern
	14	# abbrechen (too many arguments)
	15	# 20/06/95 - Siggi - noclobber muss explizit abgeschaltet, da jetzt
	16	# defaultmaessig im RRZN-Profile eingeschaltet
	17	# 10/06/97 - Siggi - Zusaetzliche Option -C bei cpp, damit // nicht
	18	# wegfallen
	19	# 25/04/00 - Siggi - Version 1.5
	20	# remote_addres und remote_user in return_addres bzw.
	21	# return_username umbenannt, return_username wird dem
	22	# mrun-Aufruf im Job ueber Option -U mitgegeben.
	23	# Neue Variable remote_username, die beim interaktiven
	24	# mrun-Aufruf zwingend ueber die neue Option -u oder
	25	# in der Konfigurationsdatei angegeben werden muss.
	26	# 08/02/01 - Siggi - Alle mrun-Meldungen ins englische uebersetzt,
	27	# Version 1.7
	28	# 05/05/02 - Siggi - Uebersetzungen mittels make-Mechanismus moeglich
	29	# 21/11/02 - Siggi - ENV-Variable XLFRTEOPTS wird vor Ausfuehrung auf
	30	# IBM gesetzt, um Record-Laenge der NAMELIST-Dateien,
	31	# zu bestimmen; Praeprozessoroptionen haben nun alle
	32	# die Form -Dtext=text, weil auf IBM sonst text durch
	33	# die leere Zeichenkette ersetzt wird
	34	# 01/08/03 - Siggi - Test of implementing dvrp+1PE on ibm
	35	# 07/01/04 - Siggi - additional preprocessor directive for ibm included
	36	# (-D$OMP=OMP) in order to avoid problems with
	37	# OMP_NUM_THREADS
	38	# 04/01/05 - Siggi - archiving on hanni and berni is done in separate
	39	# tar files, one for each node used
	40	# 07/01/04 - Siggi - old code for t3e, vpp and hpcs eliminated
	41	# 09/01/05 - Siggi - workaround for getting the IP address on gfdl3
	42	# 17/01/05 - Siggi - job for data transfer to local machine now within
	43	# job class c1 (HLRN)
	44	# 27/01/05 - Siggi - IP address workaround for gfdl3 removed
	45	# 28/01/05 - Siggi - tar-filenames on $PERM (HLRN) now include the
	46	# base filename and cycle number
	47	# 16/02/05 - Gerald - hababai validated
	48	# 14/03/05 - Siggi - abort on NEC after first runtime error (F_ERRCNT)
	49	# 29/03/05 - Marcus - berni*-en0 validated
	50	# 21/04/05 - Siggi - transfer-job-protocol for avs-data is no more stored
	51	# 24/04/05 - Siggi - netcdf support on lcmuk
	52	# 25/04/05 - Siggi - netcdf support on gfld3 (decalpha)
	53	# 11/05/05 - Siggi - files with non-numeric extensions (.xxx after cycle
	54	# number) can now be used within interactive runs
	55	# 12/05/05 - Siggi - netcdf support on ibm
	56	# 13/05/05 - Siggi - error in tar-filenames on $PERM (HLRN) removed
	57	# 18/05/05 - Siggi - netcdf support on nec
	58	# 24/05/05 - Siggi - netcdf support on ibms
	59	# 14/06/05 - Siggi - sleep interval after submit of restart job increased
	60	# to 30 seconds
	61	# 28/06/05 - Siggi - bora adjusted to new intel compiler (LD_LIBRARY_
	62	# PATH is temporarily set)
	63	# 07/09/05 - Siggi - setting of MP_EAGER_LIMIT switched off because it
	64	# caused warnings in the job protocol
	65	# 20/10/05 - Siggi - update of netcdf-version on decalpha (gfdl3)
	66	# 25/10/05 - Siggi - error in listing files for getting the cycle number
	67	# removed
	68	# 26/10/05 - Siggi - new paths for dvrp-library, transfer of catalogs
	69	# realized by file attribute trpe
	70	# 28/10/05 - Siggi - if existing, the file extension is output in case
	71	# of missing input file - no job abort in case of
	72	# missing input files with file extensions
	73	# (preliminary solution)
	74	# 31/10/05 - Siggi - data transfer from nech now within seperate job
	75	# 04/11/05 - Siggi - netcdf 3.6.0-p1 on ibmh/ibmb
	76	# 07/12/05 - Siggi - gallego and elephanta admitted
	77	# 30/12/05 - Siggi - gfdl5 (ibmy) admitted
	78	# 10/01/06 - Siggi - cpp directive for NetCDF 64bit support
	79	# 20/01/06 - Siggi - cpp directive for ibmy
	80	# 09/02/06 - Siggi - ibmy admitted for batch mode
	81	# 13/04/06 - Siggi - ostria admitted
	82	# 18/04/06 - Siggi - usage of OpenMP implemented (additional option -O)
	83	# 10/05/06 - Siggi - environment variable XLSMPOPTS set on IBM for
	84	# optimization of OpenMP runs (option stacksize is
	85	# necessary for large gridpoint numbers because
	86	# otherwise a segmentation fault occurs)
	87	# 23/05/05 - Siggi - lctit (SUN Fire X4600) admitted
	88	# 21/08/06 - Siggi - standard mrun path on scirocco is as on bora
	89	# 23/08/06 - Siggi - netcdf support for scirocco (notebook)
	90	# 20/09/06 - Marcus - add DVRP library on nech
	91	# 24/10/06 - Siggi - Environment variables for PALM steering are written
	92	# on local NAMELIST file ENVPAR
	93	# 24/11/06 - Siggi - levanto admitted, maestro switched to ifc 9.1
	94	# 28/11/06 - Siggi - call to interpret_config.x_levanto because of SuSe 10
	95	# 06/02/07 - Siggi - add DVRP library on lcmuk
	96	# 07/02/07 - Siggi - revision of source code handling, source code is
	97	# now expected in directory given by source_path and
	98	# not in the current working directory, source code
	99	# files provided in add_source_path are allways
	100	# compiled, source code to be compiled is allways
	101	# sampled in SOURCES_FOR_RUN_$fname which is a
	102	# subdirectory of the current working directory,
[5]	103	# -s TEST changed to -s WRITE_PERMIT or -s WP,
[1]	104	# adapted for RIAM (neck)
[5]	105	# bugfix for cycle number of output file (extout)
	106	# all hpmuk-related code removed
[14]	107	# 14/02/07 - Siggi - dvrp support for neck added
[21]	108	# 28/02/07 - Siggi - empty lines in configuration file are accepted
[26]	109	# mrun_path replaced by PALM_BIN,
	110	# all machines are calling interpret_config.x
[66]	111	# 14/03/07 - Siggi - fimm admitted, revision number added to terminal
	112	# output
[69]	113	# 16/03/07 - Siggi - adjustments for lctit
[78]	114	# 29/03/07 - Siggi - global revision transfered to batch job by new
	115	# option -G
[82]	116	# 30/03/07 - Siggi - compilation "by hand" removed, cpp-directives/options
	117	# + netcdf/dvrp-options are read from configuration
	118	# file, host identifier (local_host) is read from
	119	# config file, code related to ftp filetransfer
	120	# removed (incl. option -f)
[97]	121	# 19/06/07 - Siggi - time limit for cdata jobs increased
[102]	122	# 25/07/07 - Siggi - two sets of executables can be started on lcmuk,
	123	# if new option -Y (coupling) is given,
	124	# output of executables to aout_output removed,
	125	# messages are immediately written to stdout instead
[108]	126	# 03/08/07 - Marcus - add XOPT="-X $numprocs" for lcfimm
	127	# 09/08/07 - Marcus - workaround on lcfimm to propagate environment
	128	# variables out to the nodes in coupled mode -disabled-
	129	# 13/08/07 - Marcus - start local restart jobs per ssh on lcfimm
[109]	130	# 28/08/07 - Marcus - completely remove workaround on lcfimm to propagate
	131	# environment variables out to the nodes in coupled mode
[118]	132	# 15/10/07 - Siggi - Preliminary adjustments for lctit, based on Jin's
	133	# suggestions
[122]	134	# 19/10/07 - Marcus - further adjustments for lctit: add new optional
	135	# argument -g group_number, admit all sla* node_usage
	136	# queues
[129]	137	# 30/10/07 - Marcus - further adjustments for queues on lctit
[1]	138
	139
	140	# VARIABLENVEREINBARUNGEN + DEFAULTWERTE
	141
	142	set +o allexport # SICHERHEITSHALBER UNTERBINDEN, DA SONST EVTL. STAGEOUT
	143	# NICHT LAUEFT (TOO MANY ARGUMENTS - PROBLEM)
	144	set +o noclobber # EXISTIERENDE DATEIEN DUERFEN UEBERSCHRIEBEN WERDEN
	145
	146	AddFilenames=""
	147	additional_conditions=""
	148	add_source_path=""
	149	afname=""
	150	archive_save=true
	151	archive_system=none
	152	compiler_name=""
	153	cond1=""
	154	cond2=""
	155	config_file=.mrun.config
	156	cpp_opts=""
[82]	157	cpp_options=""
[1]	158	cpumax=0
	159	cpurest=0
	160	delete_temporary_catalog=true
	161	do_batch=false
	162	do_compile=true
	163	do_remote=false
	164	do_stagein=true
	165	do_stageout=true
	166	do_trace=false
	167	email_notification=""
	168	exclude=""
	169	executable=""
	170	execution_error=false
[67]	171	fimm=false
[1]	172	fname=test
	173	fromhost=""
[78]	174	global_revision=""
[122]	175	group_number=none
[1]	176	host=""
	177	host_file=""
	178	hp=""
	179	ignore_archive_error=false
	180	input_list=""
	181	interpreted_config_file=""
	182	job_on_file=""
	183	keep_data_from_previous_run=false
	184	localhost_realname=$(hostname)
	185	local_compile=false
	186	locat=normal
	187	mainprog=""
	188	makefile=""
	189	mc=$0
	190	while [[ $(echo $mc \| grep -c "/") != 0 ]]
	191	do
	192	mc=`echo $mc \| cut -f2- -d"/"`
	193	done
	194	module_files=""
	195	mrun_script_name=$mc
[82]	196	netcdf_inc=""
	197	netcdf_lib=""
[1]	198	netcdf_support=false
	199	node_usage=default
	200	numprocs=""
	201	OOPT=""
	202	openmp=false
	203	output_list=""
	204	package_list=""
	205	punkte="..........................................................."
	206	queue=none
	207	read_from_config=""
[5]	208	restart_run=false
[118]	209	return_addres=$(nslookup `hostname` 2>&1 \| grep "Address:" \| tail -1 \| awk '{print $2}')
[1]	210	if [[ $return_addres = 130.75.105.158 ]]
	211	then
	212	return_addres=172.20.25.41
	213	echo "+++ WARNING: return_addres changed to $return_addres !!!!!"
	214	fi
	215	# if [[ $return_addres = 210.117.65.1 ]]
	216	# if [[ $(nslookup `hostname` 2>&1 \| grep -c 210.117.65.1) = 1 ]]
	217	# then
	218	# [[ $localhost_realname = gfdl3.yonsei.ac.kr ]] && return_addres=165.132.26.56
	219	# fi
	220	return_password=""
	221	return_username=$LOGNAME
	222	remotecall=false
	223	remote_username=""
[102]	224	run_coupled_model=false
[1]	225	run_mode=""
	226	scirocco=false
	227	store_on_archive_system=true
	228	striche=" ----------------------------------------------------------------------------"
	229	silent=false
	230	source_list=""
	231	source_path=SOURCE
	232	tasks_per_node=""
	233	threads_per_task=1
	234	tmpcreate=false
	235	tmp_data_catalog=""
	236	transfer_problems=false
	237	usern=$LOGNAME
	238	working_directory=`pwd`
	239	TOPT=""
	240	XOPT=""
	241	zeit=$( date \| cut -c 12-19 )
	242
	243	typeset -i iec=0 iic=0 iin=0 ioc=0 iout=0 memory=0 stagein_anz=0 stageout_anz=0
[102]	244	typeset -i cputime i ii iii icycle inode ival jobges jobsek maxcycle minuten nodes pes sekunden tp1
[1]	245
[66]	246	typeset -R30 calltime
[1]	247	typeset -L20 spalte1
	248	typeset -L40 spalte2
	249	typeset -L60 spalte3
	250	typeset -L35 string1=`date`
	251	typeset -L12 string2=$usern
	252	typeset -L12 string3=$localhost_realname
	253	typeset -L12 string4
	254	typeset -L12 string5
[67]	255	typeset -L30 version="MRUN 2.0 Rev$Rev: 129 $"
[1]	256
	257
	258
	259	# EINZELNE VARIABLE FUER HAUPTPROGRAMM EXPORTIEREN
	260	export cpurest fname host localhost return_addres return_username remotecall tasks_per_node
	261
	262	# FOLGENDE VARIABLEN MUESSEN FUER DIE INTERPRETATION DER KONFIGURATIONSDATEI
	263	# EXPORTIERT WERDEN
	264	export afname config_file cpp_opts cpumax do_batch do_trace fname fromhost
[127]	265	export group_number input_list memory numprocs output_list queue run_mode
[1]	266
	267
	268
	269	# FEHLERBEHANDLUNG
	270	# BEI EXIT:
[83]	271	trap 'rm -rf $working_directory/tmp_mrun
[69]	272	if [[ $locat != localhost ]]
[1]	273	then
[22]	274	# if [[ ! -f ${mrun_path}/statistik/mrun_statistik ]]
	275	# then
	276	# cat > ${mrun_path}/statistik/mrun_statistik << %STATEND%
	277	#MRUN-calls on $localhost
	278	#
	279	#date and time user localhost remotehost termination mrun-command
	280	#--------------------------------------------------------------------------------------------------------------------
	281	#%STATEND%
	282	# chmod 666 ${mrun_path}/statistik/mrun_statistik
	283	# fi
	284	#
	285	# # EINTRAG IN DIE STATISTIK-DATEI
	286	# string4=$host
	287	# string5=$locat
	288	# if [[ "$job_on_file" = "" && $locat != control_c && $locat != user_abort ]]
	289	# then
	290	# if [[ $do_batch = true ]]
	291	# then
	292	# printf "$string1$string2$string3$string4$string5$mrun_com \n" >> ${mrun_path}/statistik/mrun_statistik
	293	# else
	294	# printf "$string1$string2$string3$string4$string5$mc \n" >> ${mrun_path}/statistik/mrun_statistik
	295	# fi
	296	# fi
[69]	297	echo " " > /dev/null
[1]	298	fi
	299
	300	if [[ $locat != normal && $locat != control_c && $locat != local_compile ]]
	301	then
	302
	303	# EVENTUELLE ERROR-KOMMANDOS ABARBEITEN
	304	(( i = 0 ))
	305	while (( i < iec ))
	306	do
	307	(( i = i + 1 ))
	308	printf "\n *** Execution of ERROR-command:\n"
	309	printf " >>> ${err_command[$i]}\n"
	310	eval ${err_command[$i]}
	311	done
	312	if [[ -n $interpreted_config_file ]] then
	313	rm -rf $interpreted_config_file
	314	fi
[71]	315	if [[ -n .mrun_environment ]] then
	316	rm -rf .mrun_environment
	317	fi
[1]	318	if [[ $tmpcreate = true ]]
	319	then
	320	printf "\n *** Contents of \"$TEMPDIR\":\n"
	321	ls -al; cd
	322	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	323	fi
	324	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	325	then
	326	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	327	fi
	328	printf "\n\n+++ MRUN killed \n\n"
	329	elif [[ $locat != control_c ]]
	330	then
	331	printf "\n\n --> all actions finished\n\n"
	332	printf " Bye, bye $usern !!\n\n"
	333	fi' exit
	334
	335
	336	# BEI TERMINAL-BREAK:
[83]	337	trap 'rm -rf $working_directory/tmp_mrun
[69]	338	[[ $tmpcreate = true ]] && (cd; rm -rf $TEMPDIR)
[1]	339	if [[ -f ~/job_queue/JOBINFO.$QSUB_REQID ]]
	340	then
	341	rm -rf ~/job_queue/JOBINFO.$QSUB_REQID
	342	fi
	343	printf "\n+++ MRUN killed by \"^C\" \n\n"
	344	locat=control_c
	345	exit
	346	' 2
	347
	348
[22]	349	# CHECK IF THE PATH FOR THE PALM BINARIES (SCRIPTS+UTILITY-PROGRAMS) HAS
	350	# BEEN SET
	351	if [[ "$PALM_BIN" = "" ]]
	352	then
	353	printf "\n +++ environment variable PALM_BIN has not been set"
	354	printf "\n please set it to the directory where the PALM scripts are located"
	355	locat=palm_bin; exit
	356	fi
	357
	358
[1]	359
	360	# SHELLSCRIPT-OPTIONEN EINLESEN UND KOMMANDO NEU ZUSAMMENSETZEN, FALLS ES
	361	# FUER FOLGEJOBS BENOETIGT WIRD
[122]	362	while getopts :a:AbBc:Cd:D:Fg:G:h:H:i:IkK:m:M:n:o:Op:P:q:r:R:s:St:T:u:U:vxX:Y option
[1]	363	do
	364	case $option in
	365	(a) afname=$OPTARG;;
	366	(A) store_on_archive_system=false; mc="$mc -A";;
	367	(b) do_batch=true; mc="$mc -b";;
	368	(B) delete_temporary_catalog=false; mc="$mc -B";;
	369	(c) config_file=$OPTARG; mc="$mc -c$OPTARG";;
[5]	370	(C) restart_run=true; mc="$mc -C";;
[1]	371	(d) fname=$OPTARG; mc="$mc -d$OPTARG";;
	372	(D) cpp_opts="$cpp_opts $OPTARG"; mc="$mc -D$OPTARG";;
[79]	373	(F) job_on_file="-D"; mc="$mc -F";;
[122]	374	(g) group_number=$OPTARG; mc="$mc -g$OPTARG";;
[78]	375	(G) global_revision=$OPTARG; mc="$mc -G'$OPTARG'";;
[1]	376	(h) host=$OPTARG; mc="$mc -h$OPTARG";;
	377	(H) fromhost=$OPTARG; mc="$mc -H$OPTARG";;
	378	(i) input_list=$OPTARG; mc="$mc -i'$OPTARG'";;
	379	(I) ignore_archive_error=true; mc="$mc -I";;
	380	(k) keep_data_from_previous_run=true; mc="$mc -k";;
	381	(K) additional_conditions="$OPTARG"; mc="$mc -K$OPTARG";;
	382	(m) memory=$OPTARG; mc="$mc -m$OPTARG";;
	383	(M) makefile=$OPTARG; mc="$mc -M$OPTARG";;
	384	(n) node_usage=$OPTARG; mc="$mc -n$OPTARG";;
	385	(o) output_list=$OPTARG; mc="$mc -o'$OPTARG'";;
	386	(O) use_openmp=true; mc="$mc -O";;
	387	(p) package_list=$OPTARG; mc="$mc -p'$OPTARG'";;
	388	(P) return_password=$OPTARG; mc="$mc -P$OPTARG";;
	389	(q) queue=$OPTARG; mc="$mc -q$OPTARG";;
	390	(r) run_mode=$OPTARG; mc="$mc -r'$OPTARG'";;
	391	(R) remotecall=true;return_addres=$OPTARG; mc="$mc -R$OPTARG";;
	392	(s) source_list=$OPTARG; mc="$mc -s'$OPTARG'";;
	393	(S) read_from_config=false; mc="$mc -S";;
	394	(t) cpumax=$OPTARG; mc="$mc -t$OPTARG";;
	395	(T) tasks_per_node=$OPTARG; mc="$mc -T$OPTARG";;
	396	(u) remote_username=$OPTARG; mc="$mc -u$OPTARG";;
	397	(U) return_username=$OPTARG; mc="$mc -U$OPTARG";;
	398	(v) silent=true; mc="$mc -v";;
	399	(x) do_trace=true;set -x; mc="$mc -x";;
	400	(X) numprocs=$OPTARG; mc="$mc -X$OPTARG";;
[102]	401	(Y) run_coupled_model=true; mc="$mc -Y";;
[1]	402	(\?) printf "\n +++ unknown option $OPTARG \n"
	403	printf "\n --> type \"$0 ?\" for available options \n"
	404	locat=parameter;exit;;
	405	esac
	406	done
	407
	408
	409	# EVTL. POSITIONSPARAMETER EINLESEN
	410	# ZUR ZEIT GIBT ES NUR DEN PARAMETER ? (=KURZINFO)
	411	shift OPTIND-1
	412
	413
	414	# KURZE AUFRUFBESCHREIBUNG WIRD HIER AUSGEGEBEN
	415	if [[ "$1" = "?" ]]
	416	then
	417	(printf "\n *** mrun can be called as follows:\n"
	418	printf "\n $mrun_script_name -b -c.. -d.. -D.. -f.. -F -h.. -i.. -I -K.. -m.. -o.. -p.. -r.. -R -s.. -t.. -T.. -v -x -X.. <modus>\n"
	419	printf "\n Description of available options:\n"
	420	printf "\n Option Description Default-Value"
	421	printf "\n -a base name of input files equiv. -d"
	422	printf "\n -A no archiving when using file-attribute fl"
	423	printf "\n -b batch-job on local machine ---"
	424	printf "\n -B do not delete temporary directory at end ---"
	425	printf "\n -c configuration file .mrun.config"
	426	printf "\n -d base name of files attached to program test"
	427	printf "\n -D preprocessor(cpp)-directives \"\" "
	428	printf "\n -F create remote job file only ---"
	429	printf "\n -h execution host $localhost_realname"
	430	printf "\n -i INPUT control list \"\" "
	431	printf "\n -I archiving errors of previous batch-jobs"
	432	printf "\n will be ignored"
	433	printf "\n -k keep data from previous run"
	434	printf "\n -K additional conditions for controling"
	435	printf "\n usage of conditional code and"
	436	printf "\n env-variables in configuration file \"\" "
	437	printf "\n -m memory demand in MB (batch-jobs) 0 MB"
	438	printf "\n -M Makefile name Makefile"
	439	printf "\n -n node usage (shared/not_shared) depending on -h"
	440	printf "\n -o OUTPUT control list \"\" "
	441	printf "\n -O use OpenMP ---"
	442	printf "\n -p software package list \"\" "
	443	printf "\n -q queue \"$queue\" "
	444	printf "\n -r run control list (combines -i -o) \"\" "
	445	printf "\n -s filenames of routines to be compiled \"\" "
	446	printf "\n must end with .f, .f90, .F, or .c !"
	447	printf "\n use \"..\" for more than one file and wildcards"
	448	printf "\n -s TEST compiles all files with w-permit"
	449	printf "\n -S config file interpreted by shellscript ---"
	450	printf "\n -t allowed cpu-time in seconds (batch) 0"
	451	printf "\n -T tasks per node depending on -h"
	452	printf "\n -u username on remote machine \"\" "
	453	printf "\n -v no prompt for confirmation ---"
	454	printf "\n -x tracing of mrun for debug purposes ---"
	455	printf "\n -X # of processors (on parallel machines) 1"
[102]	456	printf "\n -Y run coupled model ---"
[1]	457	printf "\n "
	458	printf "\n Possible values of positional parameter <modus>:"
	459	printf "\n \"?\" - this outline \n\n") \| more
	460	exit
	461	elif [[ "$1" != "" ]]
	462	then
	463	printf "\n +++ positional parameter $1 unknown \n"
	464	locat=parameter; exit
	465	fi
	466
	467
	468
	469	# KURZE STARTMELDUNG
	470	printf "\n*** $version "
	471	printf "\n will be executed. Please wait ..."
	472
	473
[82]	474
	475	# PRUEFEN, OB KONFIGURATIONS-DATEI VORHANDEN
	476	if [[ ! -f $config_file ]]
	477	then
	478	printf "\n\n +++ configuration file: "
	479	printf "\n $config_file"
	480	printf "\n does not exist"
	481	locat=connect; exit
	482	fi
	483
	484
	485	# HOST-IDENTIFIER (local_host) AUS KONFIGURATIONSDATEI BESTIMMEN
	486	line=""
	487	grep "%host_identifier" $config_file > tmp_mrun
	488	while read line
	489	do
	490	if [[ "$line" != "" \|\| $(echo $line \| cut -c1) != "#" ]]
	491	then
	492	HOSTNAME=`echo $line \| cut -d" " -s -f2`
	493	host_identifier=`echo $line \| cut -d" " -s -f3`
[83]	494	if [[ $localhost_realname = $HOSTNAME ]]
[82]	495	then
	496	localhost=$host_identifier
	497	break
	498	fi
	499	fi
	500	done < tmp_mrun
	501
	502	if [[ "$localhost" = "" ]]
	503	then
	504	printf "\n\n +++ no host identifier found in configuration file \"$config_file\""
	505	printf "\n for local host \"$localhost_realname\"."
	506	printf "\n Please add line"
	507	printf "\n \"\%host_identifier $localhost_realname <identifier>\""
	508	printf "\n to the configuration file."
	509	locat=localhost; exit
	510	fi
	511
	512
	513
	514	# HOSTSPEZIFISCHE VARIABLEN SETZEN
	515	case $localhost_realname in
	516	(breg-en0\|berni-en0) archive_system=tivoli;;
	517	(cs*) archive_system=ut;;
	518	(fimm.bccs.uib.no) fimm=true;;
	519	(gate\|n-sx) PATH=$PALM_BIN:$PATH:/usr/bin/nqsII;;
	520	(hreg-en0\|hanni-en0) archive_system=tivoli;;
	521	(scirocco) scirocco=true;;
	522	esac
	523
	524
	525
[1]	526	# BASISNAME DER INPUT-DATEIEN GLEICH ALLGEMEINEM BASISNAMEN SETZEN,
	527	# WENN NICHT VOM BENUTZER ANDERS BESTIMMT
	528	[[ "$afname" = "" ]] && afname=$fname
	529
	530
	531	# EVTL. RUN-MODUS DEN I/O-LISTEN HINZUFUEGEN
	532	if [[ "$run_mode" != "" ]]
	533	then
	534	input_list="$input_list $run_mode"
	535	output_list="$output_list $run_mode"
	536	fi
	537
	538
	539	# RECHNERNAMEN ABSPEICHERN, VON DEM AUS JOB GESTARTET WIRD,
	540	# ALLERDINGS NUR DANN, WENN NICHT PER OPTION -H BEREITS EIN WERT
	541	# ZUGEWIESEN WURDE (MRUN MACHT DIES IMMER, WENN ES SELBST BATCH-JOBS
	542	# STARTET)
	543	if [[ "$fromhost" = "" ]]
	544	then
	545	fromhost=$localhost
	546	fi
	547
	548
	549	# PRUEFEN, OB MRUN NUR TESTWEISE AUF DER LOKALEN MASCHINE KOMPILIEREN SOLL
	550	if [[ "$source_list" = LOCAL_COMPILE_TEST ]]
	551	then
	552	source_list=TEST
	553	local_compile=true
	554	host=$localhost
	555	fi
	556
	557
	558	# PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	559	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	560	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	561	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	562	if [[ -n $host && "$host" != $localhost ]]
	563	then
	564	do_batch=true
	565	do_remote=true
	566	case $host in
[5]	567	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|nech\|neck\|lctit\|unics) true;;
[1]	568	(*) printf "\n"
[83]	569	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	570	printf "\n is not available"
[1]	571	locat=nqs; (( iec = 0 )); exit;;
	572	esac
	573	else
	574	host=$localhost
	575	fi
	576
	577
	578	# ZUSATZBEDINGUNGEN (OPTION -K) AUSWERTEN
	579	if [[ -n $additional_conditions ]]
	580	then
[69]	581	# echo $additional_conditions \| cut -d" " -f1-3 \| read cond1 cond2 dummy
	582	cond1=`echo $additional_conditions \| cut -d" " -f1`
	583	cond2=`echo $additional_conditions \| cut -d" " -s -f2`
	584	dummy=`echo $additional_conditions \| cut -d" " -s -f3`
[1]	585	if [[ -n $dummy ]]
	586	then
	587	printf "\n +++ more than 2 additional conditions given for Option \"-K\""
	588	locat=options; exit
	589	fi
	590	fi
	591
	592
	593	# PRUEFEN, OB EVTL. BEI VORHERGEHENDEM LAUF (KETTENJOB) EINE
	594	# ARCHIVIERUNG FEHLGESCHLAGEN IST
	595	if [[ -f ~/job_queue/ARCHIVE_ERROR_$fname ]]
	596	then
	597	if [[ $ignore_archive_error = false ]]
	598	then
	599	printf "\n +++ data archiving of previous run failed"
	600	printf "\n see directory \~/job_queue on remote machine"
	601	locat=archive; exit
	602	else
	603	printf "\n +++ warning: data archiving in a previous run failed"
	604	printf "\n MRUN continues, trying to get backup copy"
	605	fi
	606	fi
	607
	608
	609
	610	# LESEN UND INTERPRETIEREN DER KONFIGURATIONS-DATEI VOM SHELLSCRIPT AUS
	611	# VORUEBERGEHEND ZWINGEND AUF LINUX-RECHNERN
	612	if [[ "$read_from_config" = false ]]
	613	then
	614
	615	[[ $silent = false ]] && printf "\n Reading the configuration file... "
	616	while read zeile
	617	do
	618	[[ $silent = false ]] && printf "."
	619
	620
	621	# ZUERST EVENTUELL VORKOMMENDE ENVIRONMENT-VARIABLEN DURCH IHRE WERTE
	622	# ERSETZEN
	623	eval zeile=\"$zeile\"
	624
	625
	626	# INTERPRETATION DER ZEILE
[21]	627	if [[ "$(echo $zeile)" = "" ]]
[1]	628	then
[21]	629	# LEERZEILE, KEINE AKTION
	630	continue
[1]	631
[21]	632	elif [[ "$(echo $zeile \| cut -c1)" = "#" ]]
	633	then
	634
[1]	635	# ZEILE IST KOMMENTARZEILE
	636	true
	637
	638	elif [[ "$(echo $zeile \| cut -c1)" = "%" ]]
	639	then
	640
	641	# ZEILE DEFINIERT ENVIRONMENT-VARIABLE
	642	zeile=$(echo $zeile \| cut -c2-)
[69]	643	# echo $zeile \| cut -d" " -f1-5 \| read var value for_host for_cond1 for_cond2
	644	var=`echo $zeile \| cut -d" " -f1`
	645	value=`echo $zeile \| cut -d" " -s -f2`
	646	for_host=`echo $zeile \| cut -d" " -s -f3`
	647	for_cond1=`echo $zeile \| cut -d" " -s -f4`
	648	for_cond2=`echo $zeile \| cut -d" " -s -f5`
[1]	649
	650	if [[ "$for_host" = "" \|\| ( "$for_host" = $host && "$for_cond1" = "$cond1" && "$for_cond2" = "$cond2" ) \|\| $(echo "$input_list$output_list"\|grep -c "$for_host") != 0 ]]
	651	then
	652
	653	# BEI COMPILER- CPP- ODER LINKEROPTIONEN EVTL ":" DURCH " "
	654	# ERSETZEN. "::" WIRD DURCH ":" ERSETZT.
	655	value=`echo $value \| sed 's/::/%DUM%/g' \| sed 's/:/ /g' \| sed 's/%DUM%/:/g'`
	656
	657
	658	# ENVIRONMENT-VARIABLE WIRD WERT AUS KONFIGURATIONSDATEI
	659	# ZUGEWIESEN, WENN SIE SELBST NOCH KEINEN WERT UEBER DIE
	660	# ENTSPRECHENDE SCRIPT-OPTION ERHALTEN HAT. SOLCHE
	661	# VARIABLEN HAETTEN DANN DEN WERT "" ODER IM INTEGER-FALL DEN
	662	# WERT 0. ALLGEMEINE REGEL ALSO: SCRIPT-OPTION GEHT UEBER
	663	# KONFIGURATIONSDATEI
	664	if [[ "$(eval echo \$$var)" = "" \|\| "$(eval echo \$$var)" = "0" ]]
	665	then
	666	eval $var=\$value
	667
	668	# EVTL. BILDSCHIRMAUSGABEN DER ENVIRONMENT-VARIABLEN
	669	if [[ $do_trace = true ]]
	670	then
	671	printf "\n*** ENVIRONMENT-VARIABLE $var = $value"
	672	fi
	673	fi
	674
	675	# WENN ENVIRONMENT-VARIABLE HOST VEREINBART, DANN SOFORT AUSWERTEN
	676	# WERT VON do-remote WIRD BEI DATEIVERBINDUNGEN BENOETIGT
	677	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	678	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	679	if [[ $var = host ]]
	680	then
	681	if [[ -n $host && "$host" != $localhost ]]
	682	then
	683	do_batch=true
	684	do_remote=true
	685	case $host in
	686	(ibm\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
[83]	687	(*) printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	688	printf "\n is not available"
[1]	689	locat=nqs; exit;;
	690	esac
	691	else
	692	host=$localhost
	693	fi
	694	fi
	695
	696	# VOM BENUTZER DEFINIERTE ENVIRONMENT VARIABLEN MUESSEN PRINZIPIELL
	697	# EXPORTIERT WERDEN, DA SIE VIELLEICHT IN WEITER UNTEN AUFZURUFEN-
	698	# DEN PROGRAMMEN BENOETIGT WERDEN
	699	export $var
	700	fi
	701
	702
	703
	704
	705	elif [[ "$(echo $zeile \| cut -c1-3)" = "EC:" ]]
	706	then
	707
	708	# ZEILE DEFINIERT ERROR-KOMMANDO
	709	(( iec = iec + 1 ))
	710	zeile=$(echo $zeile \| cut -c4-)
	711	err_command[$iec]="$zeile"
	712
	713	elif [[ "$(echo $zeile \| cut -c1-3)" = "IC:" ]]
	714	then
	715
	716	# ZEILE DEFINIERT INPUT-KOMMANDO
	717	(( iic = iic + 1 ))
	718	zeile=$(echo $zeile \| cut -c4-)
	719	in_command[$iic]="$zeile"
	720
	721	elif [[ "$(echo $zeile \| cut -c1-3)" = "OC:" ]]
	722	then
	723
	724	# ZEILE DEFINIERT OUTPUT-KOMMANDO
	725	(( ioc = ioc + 1 ))
	726	zeile=$(echo $zeile \| cut -c4-)
	727	out_command[$ioc]="$zeile"
	728
	729	else
	730
	731	# ZEILE DEFINIERT DATEIVERBINDUNG. EINLESEN DER DATEIEIGENSCHAFTEN
	732	# s2a: in/out - Feld
	733	# s2b: loc - Feld (optional)
	734	# s2c: tr/ar - Feld (optional)
[69]	735	# echo $zeile \| cut -d" " -f1-2 \| read s1 s2
	736	s1=`echo $zeile \| cut -d" " -f1`
	737	s2=`echo $zeile \| cut -d" " -s -f2`
[1]	738	s2a=$(echo $s2 \| cut -d":" -f1)
	739	if [[ $(echo $s2 \| grep -c ":") = 0 ]]
	740	then
	741	s2b=""
	742	s2c=""
	743	else
[69]	744	# echo $s2 \| cut -d":" -f2-3 \| sed 's/:/ /g' \| read s2b s2c
	745	s2b=`echo $s2 \| cut -d":" -f2 \| sed 's/:/ /g'`
	746	s2c=`echo $s2 \| cut -d":" -s -f3 \| sed 's/:/ /g'`
[1]	747	fi
[69]	748	# echo $zeile \| cut -d" " -f3-6 \| read s3 s4 s5 s6
	749	s3=`echo $zeile \| cut -d" " -f3`
	750	s4=`echo $zeile \| cut -d" " -s -f4`
	751	s5=`echo $zeile \| cut -d" " -s -f5`
	752	s6=`echo $zeile \| cut -d" " -s -f6`
[1]	753
	754
	755	# ABSPEICHERN DER DATEIVERBINDUNG, FALLS IN INPUT- ODER OUTPUT-LIST
	756	# VERMERKT. VARIABLE S3 KANN AUCH LISTE ENTHALTEN (FELDTRENNER ":")
	757	# DATEIVERBINDUNG WIRD DANN NICHT ABGESPEICHERT UND GEPRUEFT, WENN
	758	# PROGRAMMLAUF AUF REMOTE-MASCHINE ERFOLGT UND DATEI NUR LOKAL VOR-
	759	# HANDEN SEIN MUSS (D.H. s2b = loc)
	760	IFSALT="$IFS"; IFS="$IFS:"
	761	if [[ "$s2a" = in && ! ( $do_remote = true && ( "$s2b" = loc \|\| "$s2b" = locopt ) ) ]]
	762	then
	763	found=false
	764	for actual in $input_list
	765	do
	766	for formal in $s3
	767	do
	768	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	769	done
	770	done
	771	if [[ $found = true ]]
	772	then
	773	(( iin = iin + 1 ))
	774	localin[$iin]=$s1; transin[$iin]=$s2b; actionin[$iin]=$s2c;
	775	typein[$iin]=$s3; pathin[$iin]=$s4; endin[$iin]=$s5;
	776	extin[$iin]=$s6
	777	fi
	778	elif [[ "$s2a" = out && ! ( $do_remote = true && "$s2b" = loc ) ]]
	779	then
	780	found=false
	781	for actual in $output_list
	782	do
	783	for formal in $s3
	784	do
	785	[[ $actual = $formal \|\| "$formal" = "-" ]] && found=true
	786	done
	787	done
	788	if [[ $found = true ]]
	789	then
	790	(( iout = iout + 1 ))
	791	localout[$iout]=$s1; actionout[$iout]=$s2c; typeout[$iout]=$s3;
	792	pathout[$iout]=$s4; endout[$iout]=$s5; extout[$iout]=$s6
	793	fi
	794	elif [[ "$s2a" != in && "$s2a" != out ]]
	795	then
	796	printf "\n +++ I/O-attribute in configuration file $config_file has the invalid"
	797	printf "\n value \"$s2\". Only \"in\" and \"out\" are allowed!"
	798	locat=connect; exit
	799	fi
	800	IFS="$IFSALT"
	801	fi
	802	done < $config_file
	803
	804	else
	805
	806
	807	# INTERPRETATION DER KONFIGURATIONSDATEI MITTELS FORTRAN 90 - PROGRAMM
	808	[[ $silent = false ]] && printf "..."
	809	export cond1 cond2 config_file do_remote do_trace input_list localhost output_list
	810	export interpreted_config_file=.icf.$RANDOM
	811
	812
[69]	813
	814	# ENVIRONMENT-VARIABLEN FUER INTERPRET_CONFIG UEBER NAMELIST_DATEI ZUR
	815	# VERFUEGUNG STELLEN
	816	cat > .mrun_environment << %%END%%
	817	&mrun_environment cond1 = '$cond1', cond2 = '$cond2',
	818	config_file = '$config_file', do_remote = '$do_remote',
	819	do_trace = '$do_trace', host = '$host',
	820	input_list = '$input_list', icf = '$interpreted_config_file',
	821	localhost = '$localhost', output_list = '$output_list' /
	822
	823	%%END%%
	824
	825	# WERTE VON MRUN-OPTIONEN SICHERN UND DAMIT GEGEBENENFALLS SPAETER DIE
	826	# IN DER KONFIGURAIONSDATEI ANGEGEBENEN WERTE UEBERSTEUERN
	827	mrun_memory=$memory
[127]	828	mrun_group_number=$group_number
[69]	829	mrun_cpumax=$cpumax
	830	mrun_numprocs=$numprocs
	831
[66]	832	if [[ $localhost_realname = "gate" ]]
	833	then
	834	interpret_config_gate.x
	835	else
	836	interpret_config.x
	837	fi
[71]	838	rm .mrun_environment
[1]	839
[71]	840
[1]	841	# AUSFUEHRUNG DER GENERIERTEN SHELL-KOMMANDOS IN DIESER SHELL
	842	chmod u+x $interpreted_config_file
	843	export PATH=$PATH:.
	844	. $interpreted_config_file
[71]	845	rm $interpreted_config_file
[1]	846
[71]	847
[69]	848	# OPTIONSWERTE UEBERSTEUERN KONFIGURATIONSDATEI
[71]	849	[[ $mrun_memory != 0 ]] && memory=$mrun_memory
[127]	850	[[ "$mrun_group_number" != "none" ]] && group_number=$mrun_group_number
[71]	851	[[ $mrun_cpumax != 0 ]] && cpumax=$mrun_cpumax
	852	[[ "$mrun_numprocs" != "" ]] && numprocs=$mrun_numprocs
[69]	853
[1]	854	fi
	855
	856
	857	# QUELLTEXTVERZEICHNIS AUF LOKALER MASCHINE AUS KONFIGURATIONSDATEI
	858	# BESTIMMEN (WUERDE SONST EVTL. DAS VERZEICHNIS DES JEWEILS UNTER -h
	859	# ANGEGEBENEN REMOTE-RECHNERS SEIN)
	860	# BEI BATCH-JOBS SIND DIE ZU UEBERSETZENDEN PROGRAMMTEILE SCHON KOMPLETT
	861	if [[ "$SOURCES_COMPLETE" = "" ]]
	862	then
	863
	864	# ZUERST PRUEFEN, OB EIN GLOBALER QUELLTEXTPFAD FUER ALLE RECHNER
	865	# VEREINBART WURDE
	866	source_path=""
	867	line=""
	868	grep "%source_path" $config_file > tmp_mrun
	869	while read line
	870	do
	871	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	872	then
	873	if [[ "$(echo $line \| cut -d" " -f3)" = "" ]]
	874	then
	875	global_source_path=`echo $line \| cut -d" " -f2`
	876	fi
	877	fi
	878	done < tmp_mrun
	879
	880	line=""
	881	found=false
	882	grep " $localhost" $config_file \| grep "%source_path" > tmp_mrun
	883	while read line
	884	do
	885	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	886	then
	887	if [[ $found = true ]]
	888	then
	889	printf "\n\n +++ more than one source path found in configuration file"
	890	printf "\n for local host \"$localhost\" "
	891	locat=source_path; exit
	892	fi
	893	source_path=`echo $line \| cut -d" " -f2`
	894	found=true
	895	fi
	896	done < tmp_mrun
	897	rm tmp_mrun
	898
	899	if [[ "$source_path" = "" ]]
	900	then
	901	if [[ "$global_source_path" != "" ]]
	902	then
	903	source_path=$global_source_path
	904	else
	905	printf "\n\n +++ no source path found in configuration file"
	906	printf "\n for local host \"$localhost\" "
	907	locat=source_path; exit
	908	fi
	909	fi
	910	eval source_path=$source_path
	911
	912	if [[ ! -d $source_path ]]
	913	then
	914	printf "\n\n +++ source path \"$source_path\" on local host"
	915	printf "\n \"$localhost\" does not exist"
	916	locat=source_path; exit
	917	fi
	918
	919	fi
	920
	921
[78]	922	# GLOBALE REVISIONSNUMMER ERMITTELN (FORTSETZUNGSLAEUFEN WIRD DIESE
	923	# DURCH OPTION -G MITGETEILT)
	924	if [[ "$global_revision" = "" ]]
	925	then
	926	global_revision=`svnversion $source_path 2>/dev/null`
	927	global_revision="Rev: $global_revision"
	928	fi
[1]	929
[78]	930
[1]	931	# NOCHMAL PRUEFEN, OB AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL
	932	# (HOST KANN IN KONFIGURATIONSDATEI ANDERS FESTGELEGT WORDEN SEIN)
	933	# WERT VON do_remote WIRD FUER DATEIVERBINDUNGEN BENOETIGT.
	934	# WENN AUF REMOTE-MASCHINE GERECHNET WIRD, IST GLEICHZEITIG KLAR,
	935	# DASS EIN BATCH-JOB GESTARTET WERDEN MUSS
	936	if [[ -n $host && "$host" != $localhost ]]
	937	then
	938	do_batch=true
	939	do_remote=true
	940	case $host in
[5]	941	(ibm\|ibmb\|ibmh\|ibms\|ibmy\|lctit\|nech\|neck\|unics) true;;
[1]	942	(*) printf "\n"
[83]	943	printf "\n +++ sorry: execution of batch jobs on remote host \"$host\""
	944	printf "\n is not available"
[1]	945	locat=nqs; (( iec = 0 )); exit;;
	946	esac
	947	else
	948	host=$localhost
	949	fi
	950
	951
	952	# PRUEFUNG EINIGER PROZESSORZAHLANGABEN BEI RECHNUNGEN AUF PARALLELRECHNERN
	953	if [[ "$cond1" = parallel \|\| "$cond2" = parallel ]]
	954	then
	955
	956	# PRUEFEN, OB DIE ANZAHL DER ZU VERWENDENDEN PES ANGEGEBEN WURDE
	957	if [[ ! -n $numprocs ]]
	958	then
	959	printf "\n"
	960	printf "\n +++ option \"-K parallel\" requires additional specification"
	961	printf "\n of the number of processors to be used by"
	962	printf "\n mrun-option \"-X\" or by environment-variable"
	963	printf "\n \"numprocs\" in the configuration file"
	964	locat=numprocs; (( iec = 0 )); exit
	965	fi
	966
	967	# PRUEFEN, OB DIE PROZESSORANZAHL PRO KNOTEN ANGEGEBEN WURDE (GGF.
	968	# DEFAULT-WERT SETZEN) UND OB SIE EIN GANZZAHLIGER TEILER DER
	969	# GESAMTPROZESSORANZAHL IST
	970	if [[ $host = nech \|\| $host = neck \|\| $host = ibmh \|\| $host = ibmb \|\| $host = ibms ]]
	971	then
	972	[[ "$tasks_per_node" = "" ]] && tasks_per_node=6
	973	(( ival = $tasks_per_node ))
	974	(( pes = numprocs ))
	975	# if [[ $(echo $package_list \| grep -c dvrp_graphics+1PE) = 1 ]]
	976	# then
	977	# (( pes = pes - 1 ))
	978	# fi
	979	(( ii = pes / ival ))
	980	if (( pes - ii * ival > 0 ))
	981	then
	982	printf "\n"
	983	printf "\n +++ tasks per node (option \"-T\") must be an integral"
	984	printf "\n divisor of the total number of processors (option \"-X\")"
	985	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	986	locat=tasks_per_node; (( iec = 0 )); exit
	987	fi
	988	fi
	989
	990	# IBMY HAT NUR EINEN KNOTEN
	991	if [[ $host = ibmy ]]
	992	then
	993	if [[ "$tasks_per_node" != "" && "$tasks_per_node" != "$numprocs" ]]
	994	then
	995	printf "\n"
	996	printf "\n +++ on ibmy, tasks per node (option \"-T\") must be equal to the"
	997	printf "\n total number of processors (option \"-X\")"
	998	printf "\n values of this mrun-call: \"-T $tasks_per_node\" \"-X $numprocs\""
	999	locat=tasks_per_node; (( iec = 0 )); exit
	1000	fi
	1001	fi
	1002
	1003	# FALLS OPENMP PARALLELISIERUNG VERWENDET WERDEN SOLL, ANZAHL VON THREADS
	1004	# SETZEN UND ZAHL DER TASKS PRO KNOTEN AUF 1 SETZEN
	1005	if [[ $use_openmp = true ]]
	1006	then
	1007	threads_per_task=$tasks_per_node
	1008	tasks_per_node=1
	1009	fi
	1010	OOPT="-O $threads_per_task"
	1011	TOPT="-T $tasks_per_node"
	1012
	1013	# GESAMTZAHL DER KNOTEN BESTIMMEN
	1014	if [[ "$tasks_per_node" != "" ]]
	1015	then
	1016	(( nodes = numprocs / ( tasks_per_node * threads_per_task ) ))
	1017	fi
	1018
	1019	# PRUEFEN, OB NODE USAGE EINEN ERLAUBTEN WERT HAT BZW. DEN DEFAULT
	1020	# SETZEN
	1021	if [[ $node_usage = default ]]
	1022	then
	1023	if [[ $host = ibms ]]
	1024	then
	1025	node_usage=shared
[118]	1026	elif [[ $host = lctit ]]
	1027	then
[129]	1028	node_usage=sla3
[1]	1029	else
	1030	node_usage=not_shared
	1031	fi
	1032	fi
[126]	1033	if [[ $node_usage != shared && $node_usage != not_shared && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]]
[1]	1034	then
	1035	printf "\n"
	1036	printf "\n +++ node usage (option \"-n\") is only allowed to be set"
	1037	printf "\n \"shared\" or \"not_shared\""
	1038	locat=tasks_per_node; (( iec = 0 )); exit
	1039	fi
	1040
	1041	fi
	1042
	1043	# PRUEFEN, OB HOSTFILE EXISTIERT
	1044	if [[ -n $hostfile ]]
	1045	then
	1046	if [[ ! -f $hostfile ]]
	1047	then
	1048	printf "\n"
	1049	printf "\n +++ hostfile \"$hostfile\" does not exist"
	1050	locat=hostfile; exit
	1051	fi
	1052	fi
	1053
	1054	# PRUEFEN, OB RHOSTS DATEI EXISTIERT. GEGEBENENFALLS ANLEGEN BZW. ERWEITERN
	1055	if [[ $host = ibmy && $do_remote = false ]]
	1056	then
	1057	if [[ ! -f $HOME/.rhosts ]]
	1058	then
	1059	echo "gfdl5.yonsei.ac.kr" > $HOME/.rhosts
	1060	printf "\n\n *** file:"
	1061	printf "\n $HOME/.rhosts"
	1062	printf "\n was created\n"
	1063	fi
	1064	if [[ $(grep -c gfdl5.yonsei.ac.kr $HOME/.rhosts) = 0 ]]
	1065	then
	1066	echo "gfdl5.yonsei.ac.kr" >> $HOME/.rhosts
	1067	printf "\n\n *** file:"
	1068	printf "\n $HOME/.rhosts"
	1069	printf "\n was extended by the name of the current host\n"
	1070	fi
	1071	fi
	1072
	1073
	1074
	1075	# FALLS NICHT VORGEGEBEN, DEFAULT-QUEUE AUF DER ZIELMASCHINE FESTLEGEN
	1076	if [[ $queue = none ]]
	1077	then
	1078	case $host in
	1079	(ibmb) if [[ $node_usage = shared ]]
	1080	then
	1081	queue=cshare
	1082	else
	1083	queue=csolo
	1084	fi;;
	1085	(ibmh) if [[ $node_usage = shared ]]
	1086	then
	1087	queue=cshare
	1088	else
	1089	queue=csolo
	1090	fi;;
	1091	(ibmy) queue=parallel;;
[129]	1092	(lctit) queue=sla3;;
[1]	1093	(nech) queue=none;;
	1094	(neck) queue=P;;
	1095	(unics) queue=unics;;
	1096	esac
	1097	fi
	1098
	1099
	1100	# VOLLSTAENDIGE DATEINAMEN DER INPUT-FILES BILDEN,
	1101	# INPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1102	# ERMITTELN
	1103	(( i = 0 ))
	1104	while (( i < iin ))
	1105	do
	1106	(( i = i + 1 ))
	1107	(( maxcycle = 0 ))
	1108
	1109	# NAMENSBILDUNG (EVTL. IST FESTER DATEINAME VORGEGEBEN)
	1110	if [[ "${actionin[$i]}" = di ]]
	1111	then
	1112	remotepathin[$i]=${pathin[$i]}/${endin[$i]} # REMOTE-PFAD ERST AUF
	1113	# REM-MASCHINE AUSWERTEN
	1114	eval filename=${pathin[$i]}/${endin[$i]}
	1115	else
	1116	remotepathin[$i]=${pathin[$i]}/${afname}${endin[$i]} # REMOTE-PFAD ERST AUF
	1117	# REM-MASCHINE AUSWERTEN
	1118	eval filename=${pathin[$i]}/${afname}${endin[$i]}
	1119	fi
	1120
	1121	# PRUEFEN AUF VORHANDENSEIN
	1122	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1123	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1124	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1125	then
	1126	# DATEIEN MIT EXTENSION (Z.B. NC) MUESSEN NICHT ZWINGEND VORHANDEN
	1127	# SEIN, DESHALB IN SOLCHEN FAELLEN KEIN ABBRUCH. DIES IST NUR EINE
	1128	# VORUEBERGEHENDE LOESUNG (OKT 05). NICHT ZWINGEND BENOETIGTE
	1129	# EINGABEDATEIEN SOLLTEN EINE SPEZIELLE OPTION IN DER DATEI-
	1130	# VERBINDUNGSANWEISUNG BEKOMMEN (Z.B. inopt?)
	1131	if [[ "${transin[$i]}" != "locopt" ]]
	1132	then
	1133	printf "\n\n +++ INPUT-file: "
	1134	if [[ "${extin[$i]}" = "" ]]
	1135	then
	1136	printf "\n $filename"
	1137	else
	1138	printf "\n $filename.${extin[$i]}"
	1139	fi
	1140	printf "\n does not exist\n"
	1141	locat=input; exit
	1142	else
	1143	transin[$i]="unavailable"
	1144	fi
	1145	else
	1146
	1147	# ZYKLUSNUMMER FESTSTELLEN
	1148	ls -1 -d $filename > filelist 2>/dev/null
	1149	ls -1 -d $filename.* >> filelist 2>/dev/null
	1150	while read zeile
	1151	do
	1152	cycle=$(print $zeile \| cut -f2 -d".")
	1153	if [[ "$cycle" = "$zeile" ]]
	1154	then
	1155	(( icycle = 0 ))
	1156	elif [[ "$cycle" = "${extin[$i]}" ]]
	1157	then
	1158	(( icycle = 0 ))
	1159	else
	1160	(( icycle = $cycle ))
	1161	fi
	1162	if (( icycle > maxcycle ))
	1163	then
	1164	(( maxcycle = icycle ))
	1165	file_to_be_used=$zeile
	1166	fi
	1167	done <filelist
	1168	rm filelist
	1169
	1170	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN
	1171	if (( maxcycle > 0 ))
	1172	then
	1173	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1174	then
	1175	filename=${filename}.$maxcycle.${extin[$i]}
	1176	else
	1177	filename=${filename}.$maxcycle
	1178	fi
	1179	else
	1180	if [[ "${extin[$i]}" != " " && "${extin[$i]}" != "" ]]
	1181	then
	1182	filename=${filename}.${extin[$i]}
	1183	fi
	1184	fi
	1185
	1186	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1187	# DA SPAETER BEI RUECKSPEICHERN VOM ARCHIVSYSTEM EVTL. BENOETIGT
	1188	absnamein[$i]=$filename
	1189	if (( maxcycle > 0 ))
	1190	then
	1191	if [[ "${actionin[$i]}" = di ]]
	1192	then
	1193	frelin[$i]=${endin[$i]}.$maxcycle
	1194	else
	1195	frelin[$i]=${afname}${endin[$i]}.$maxcycle
	1196	fi
	1197	else
	1198	if [[ "${actionin[$i]}" = di ]]
	1199	then
	1200	frelin[$i]=${endin[$i]}
	1201	else
	1202	frelin[$i]=${afname}${endin[$i]}
	1203	fi
	1204	fi
	1205
	1206	fi
	1207	done
	1208
	1209
	1210	# VOLLSTAENDIGE DATEINAMEN (OHNE $ ODER ~) DER OUTPUT-FILES BILDEN,
	1211	# OUTPUT-DATEIEN AUF VORHANDENSEIN PRUEFEN UND EVTL. HOECHSTE ZYKLUSNUMMER
	1212	# ERMITTELN ODER, FALLS NICHT VORHANDEN, PRUEFEN, OB SIE SICH ANLEGEN LASSEN
	1213	# DIESE AKTIONEN FINDEN NICHT STATT, WENN PROGRAMM AUF REMOTE-MASCHINE
	1214	# RECHNET UND DATEI ANSCHLIESSEND TRANSFERIERT WERDEN SOLL!
	1215	(( i = 0 ))
	1216	while (( i < iout ))
	1217	do
	1218	(( i = i + 1 ))
	1219	if [[ ! ( $fromhost != $localhost && ( "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ) ) ]]
	1220	then
	1221	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = trpe ]]
	1222	then
	1223	actionout[$i]=""
	1224	elif [[ "${actionout[$i]}" = tra ]]
	1225	then
	1226	actionout[$i]=a
	1227	fi
	1228	(( maxcycle = 0 ))
	1229	eval filename=${pathout[$i]}/${fname}${endout[$i]}
	1230	eval catalogname=${pathout[$i]}
	1231	if [[ $(ls $filename* 2>&1 \| grep -c "not found") = 1 \|\| \
	1232	$(ls $filename* 2>&1 \| grep -c "No such file") = 1 \|\| \
	1233	$(ls $filename* 2>&1 \| grep -c "does not exist") = 1 ]]
	1234	then
	1235
	1236	# OUTPUT-DATEI NICHT VORHANDEN. PRUEFEN, OB ANLEGEN MOEGLICH.
	1237	if cat /dev/null > $filename
	1238	then
	1239	rm $filename
	1240	else
	1241
	1242	# PRUEFEN, OB KATALOG VORHANDEN UND EVTL. DIESEN ANLEGEN
	1243	if [[ ! -d $catalogname ]]
	1244	then
	1245	if mkdir -p $catalogname
	1246	then
	1247	printf "\n\n *** directory:"
	1248	printf "\n $catalogname"
	1249	printf "\n was created\n"
	1250	else
	1251	printf "\n\n +++ OUTPUT-file:"
	1252	printf "\n $filename"
	1253	printf "\n cannot be created, because directory does not exist"
	1254	printf "\n and cannot be created either"
	1255	printf "\n"
	1256	locat=output ; exit
	1257	fi 2>/dev/null
	1258	else
	1259	printf "\n\n +++ OUTPUT-file:"
	1260	printf "\n $filename"
	1261	printf "\n cannot be created, although directory exists"
	1262	printf "\n"
	1263	locat=output ; exit
	1264	fi
	1265	fi 2>/dev/null
	1266	else
	1267
	1268	# ZYKLUSNUMMER FESTSTELLEN
	1269	ls -1 -d $filename > filelist 2>/dev/null
	1270	ls -1 -d $filename.* >> filelist 2>/dev/null
	1271	while read zeile
	1272	do
	1273	cycle=$(print $zeile \| cut -f2 -d".")
	1274	if [[ "$cycle" = "$zeile" \|\| "$cycle" = ${extout[$i]} ]]
	1275	then
	1276	(( icycle = 1 ))
	1277	else
	1278	(( icycle = $cycle + 1 ))
	1279	fi
	1280	if (( icycle > maxcycle ))
	1281	then
	1282	(( maxcycle = icycle ))
	1283	fi
	1284	done <filelist
	1285	rm filelist
	1286	fi
	1287
	1288	# EVTL. ZYKLUSNUMMER AN DATEINAMEN ANFUEGEN UND PRUEFEN, OB SICH
	1289	# DATEI AUCH WIRKLICH ANLEGEN LAESST. IM APPEND-FALL MUSS AN DEN
	1290	# HOECHSTEN VORHANDENEN ZYKLUS-ANGEHAENGT WERDEN. ANLAGEPRUEFUNG
	1291	# IST DANN NATUERLICH NICHT ZULAESSIG BZW. MOEGLICH
	1292	if [[ "${actionout[$i]}" != a ]]
	1293	then
	1294	if (( maxcycle > 0 ))
	1295	then
	1296	filename=${filename}.$maxcycle
	1297	if cat /dev/null > $filename
	1298	then
	1299	rm $filename
	1300	else
	1301	printf "\n +++ OUTPUT-file:"
	1302	printf "\n $filename"
	1303	printf "\n cannot be created"
	1304	locat=output ; exit
	1305	fi
	1306	fi
	1307	else
	1308	(( maxcycle = maxcycle - 1 ))
	1309	if (( maxcycle > 0 ))
	1310	then
	1311	filename=${filename}.$maxcycle
	1312	fi
	1313	fi
	1314
	1315	# DATEINAMEN OHNE PFAD ABER MIT ZYKLUSNUMMER ABSPEICHERN,
	1316	# DA SPAETER BEI ABLAGE AUF ARCHIVSYSTEM BZW. FUER
	1317	# DATEI OUTPUT_FILE_CONNECTIONS EVTL. BENOETIGT
	1318	pathout[$i]=$filename
	1319	if (( maxcycle > 0 ))
	1320	then
	1321	frelout[$i]=${fname}${endout[$i]}.$maxcycle
	1322	else
	1323	frelout[$i]=${fname}${endout[$i]}
	1324	fi
	1325
	1326	fi
	1327	done
	1328
	1329
[83]	1330	# DAS DVRP-PAKET ERFORDERT EINE ENTSPRECHENDE BIBLIOTHEK
	1331	if [[ $(echo $package_list \| grep -c dvrp_graphics) != 0 ]]
	1332	then
	1333	if [[ "$dvrp_inc" = "" ]]
	1334	then
	1335	printf "\n\n +++ no value for \"dvrp_inc\" given in configuration file"
	1336	printf "\n This is required for the dvrp_graphics package.\n"
	1337	locat=dvrp; exit
	1338	fi
	1339	if [[ "$dvrp_lib" = "" ]]
	1340	then
	1341	printf "\n\n +++ no value for \"dvrp_lib\" given in configuration file"
	1342	printf "\n This is required for the dvrp_graphics package.\n"
	1343	locat=dvrp; exit
	1344	fi
	1345	fi
	1346
	1347
[1]	1348	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM ODER NUR EIN AUSFUEHRBARES
	1349	# PROGRAMM VEREINBART WURDE (IN DIESEM FALL BRAUCHT IM WEITEREN NICHT
	1350	# UEBERSETZT ZU WERDEN)
	1351	if [[ "$mainprog" = "" && "$executable" = "" ]]
	1352	then
	1353	printf "\n +++ neither main program nor executable defined"
	1354	locat=source; exit
	1355	elif [[ "$mainprog" != "" && "$executable" != "" ]]
	1356	then
	1357	printf "\n +++ main program as well as executable defined"
	1358	locat=source; exit
	1359	elif [[ "$mainprog" = "" && "$executable" != "" ]]
	1360	then
	1361	do_compile=false
	1362	fi
	1363
	1364
	1365	# ALLE ZU UEBERSETZENDEN PROGRAMMTEILE ZUSAMMENSAMMELN
	1366	# BEI BATCH-JOBS IST DIES NICHT NOETIG, WEIL DIE PROGRAMMTEILE BEREITS DURCH
	1367	# DEN MRUN-AUFRUF ERMITTELT SIND, DER DEN BATCH-JOB GENERIERT HAT, UND
	1368	# IM VERZEICHNIS SOURCES_FOR_RUN_... ABGELEGT SIND
	1369	if [[ $do_compile = true && "$SOURCES_COMPLETE" = "" ]]
	1370	then
	1371
[5]	1372	[[ "$source_list" = LM ]] && source_list=LOCALLY_MODIFIED
	1373	[[ "$source_list" = WP ]] && source_list=WRITE_PERMIT
[1]	1374
[5]	1375	if [[ $restart_run != true ]]
[1]	1376	then
	1377	rm -rf SOURCES_FOR_RUN_$fname
	1378	mkdir SOURCES_FOR_RUN_$fname
	1379	fi
	1380
	1381
	1382	# EVTL. ZU UEBERSETZENDE PROGRAMMTEILE DADURCH BESTIMMEN, DASS GEPRUEFT
	1383	# WIRD, WELCHE DATEIEN WRITE-PERMIT BESITZEN (DATEIEN SOLLTEN DESHALB
	1384	# UNTER RCS-KONTROLLE STEHEN). MIT DER VARIABLEN EXCLUDE KOENNEN
	1385	# BESTIMMTE DATEIEN GRUNDSAETZLICH VON DER UEBERSETZUNG AUSGESCHLOSSEN
	1386	# WERDEN. DIES IST NUR BEI MANUELLEM START VON MRUN DURCH DEN BENUTZER
	1387	# MOEGLICH, DA BEI AUTOMATISCHEN RESTARTS TEST DURCH DIE TATSAECHLICH
	1388	# ZU UBERSETZENDEN DATEIEN ERSETZT IST.
	1389	# ALLE ERMITTELTEN DATEIEN WERDEN IM VERZEICHNIS SOURCES_FOR_RUN_...
	1390	# GESAMMELT
[5]	1391	if [[ "$source_list" = WRITE_PERMIT ]]
[1]	1392	then
	1393
	1394	source_list=""
	1395	cd $source_path
	1396
	1397
	1398	# ALLE MOEGLICHEN QUELLCODEDATEIEN AUFLISTEN
	1399	Names=$(ls -1 *.f90 2>&1)
	1400	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && Filenames="$Names"
	1401	Names=$(ls -1 *.F90 2>&1)
	1402	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && Filenames="$Filenames $Names"
	1403	Names=$(ls -1 *.F 2>&1)
	1404	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && Filenames="$Filenames $Names"
	1405	Names=$(ls -1 *.f 2>&1)
	1406	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && Filenames="$Filenames $Names"
	1407	Names=$(ls -1 *.c 2>&1)
	1408	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && Filenames="$Filenames $Names"
	1409
	1410
	1411	# DATEIEN MIT WRITE-PERMIT NACH SOURCES_FOR_RUN_... KOPIEREN
	1412	for dateiname in $Filenames
	1413	do
	1414	if [[ -w $dateiname ]]
	1415	then
	1416	if [[ "$exclude" = "" \|\| $(echo $exclude \| grep -c $dateiname) = 0 ]]
	1417	then
	1418	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1419	source_list=$source_list"$dateiname "
	1420	fi
	1421	fi
	1422	done
	1423
	1424	cd - > /dev/null
	1425
	1426
[5]	1427	elif [[ "$source_list" = LOCALLY_MODIFIED ]]
	1428	then
	1429
	1430	# MODIFIZIERTE DATEIEN DER SVN-ARBEITSKOPIE BESTIMMEN
	1431	source_list=""
	1432	cd $source_path
	1433
	1434
	1435	# PRUEFEN, OB VERZEICHNIS UEBERHAUPT UNTER SVN-KONTROLLE STEHT
	1436	if [[ ! -d .svn ]]
	1437	then
	1438	printf "\n\n +++ source directory"
	1439	printf "\n \"$source_path\" "
	1440	printf "\n is not under control of \"subversion\"."
	1441	printf "\n Please do not use mrun-option \"-s LOCALLY MODIFIED\"\n"
	1442	fi
	1443
	1444
	1445	# ALLE MODIFIZIERTEN QUELLCODEDATEIEN AUFLISTEN
	1446	Filenames=""
[69]	1447	svn status > tmp_mrun
	1448	while read line
[5]	1449	do
	1450	firstc=`echo $line \| cut -c1`
	1451	if [[ $firstc = M \|\| $firstc = "?" ]]
	1452	then
	1453	Name=`echo "$line" \| cut -c8-`
	1454	extension=`echo $Name \| cut -d. -f2`
	1455	if [[ "$extension" = f90 \|\| "$extension" = F90 \|\| "$extension" = f \|\| "$extension" = F \|\| "$extension" = c ]]
	1456	then
	1457	Filenames="$Filenames "$Name
	1458	fi
	1459	fi
[69]	1460	done < tmp_mrun
[5]	1461
	1462
	1463	# DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1464	for dateiname in $Filenames
	1465	do
	1466	cp $dateiname $working_directory/SOURCES_FOR_RUN_$fname
	1467	source_list=$source_list"$dateiname "
	1468	done
	1469
	1470	cd - > /dev/null
	1471
	1472
[1]	1473	# MITTELS OPTION -s ANGEGEBENE DATEIEN NACH SOURCES_FOR_RUN_... KOPIEREN
	1474	# BEI AUTOMATISCHEN FORTSETZUNGSLAEUFEN SIND DORT SCHON ALLE DATEIEN
	1475	# VORHANDEN
[5]	1476	elif [[ "$source_list" != "" && $restart_run != true ]]
[1]	1477	then
	1478
	1479	cd $source_path
	1480
	1481	for filename in $source_list
	1482	do
	1483
	1484	# QUELLTEXT-DATEI DARF KEINE PFADE BEINHALTEN
	1485	if [[ $(print $filename \| grep -c "/") != 0 ]]
	1486	then
	1487	printf "\n +++ source code file: $filename"
	1488	printf "\n must not contain (\"/\") "
	1489	locat=source; exit
	1490	fi
	1491
	1492	if [[ ! -f $filename ]]
	1493	then
	1494	printf "\n +++ source code file: $filename"
	1495	printf "\n does not exist"
	1496	locat=source; exit
	1497	else
	1498	cp $filename $working_directory/SOURCES_FOR_RUN_$fname
	1499	fi
	1500
	1501	done
	1502
	1503	cd - > /dev/null
	1504
	1505	fi
	1506
	1507
	1508	# PRUEFEN, OB ENTWEDER HAUPTPROGRAMM VORHANDEN UND ES EVTL. IN DER
	1509	# LISTE DER ZU UEBERSETZENDEN PROGRAMMTEILE MIT ENTHALTEN IST (WENN
	1510	# NICHT, WIRD ES DIESER LISTE HINZUGEFUEGT)
[5]	1511	if [[ $restart_run != true ]]
[1]	1512	then
	1513
	1514	if [[ ! -f "$source_path/$mainprog" ]]
	1515	then
	1516	printf "\n\n +++ main program: $mainprog"
	1517	printf "\n does not exist in source directory"
	1518	printf "\n \"$source_path\"\n"
	1519	locat=source; exit
	1520	else
	1521	if [[ $(echo $source_list \| grep -c $mainprog) = 0 ]]
	1522	then
	1523	cp $source_path/$mainprog SOURCES_FOR_RUN_$fname
	1524	source_list=${mainprog}" $source_list"
	1525	fi
	1526	fi
	1527	fi
	1528
	1529
	1530	# DATEIEN AUS ZUSAETZLICHEM QUELLVERZEICHNIS HINZUFUEGEN
[5]	1531	if [[ $restart_run != true && "$add_source_path" != "" ]]
[1]	1532	then
	1533
	1534	# GIBT ES DAS VERZEICHNIS UEBERHAUPT?
	1535	if [[ ! -d $add_source_path ]]
	1536	then
	1537	printf "\n\n +++ WARNING: additional source code directory"
	1538	printf "\n \"$add_source_path\" "
	1539	printf "\n does not exist or is not a directory."
	1540	printf "\n No source code will be used from this directory!\n"
	1541	add_source_path=""
	1542	sleep 3
	1543	else
	1544
	1545	cd $add_source_path
	1546
	1547	Names=$(ls -1 *.f90 2>&1)
	1548	[[ $(echo $Names \| grep -c '*.f90') = 0 ]] && AddFilenames="$Names"
	1549	Names=$(ls -1 *.F90 2>&1)
	1550	[[ $(echo $Names \| grep -c '*.F90') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1551	Names=$(ls -1 *.F 2>&1)
	1552	[[ $(echo $Names \| grep -c '*.F') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1553	Names=$(ls -1 *.f 2>&1)
	1554	[[ $(echo $Names \| grep -c '*.f') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1555	Names=$(ls -1 *.c 2>&1)
	1556	[[ $(echo $Names \| grep -c '*.c') = 0 ]] && AddFilenames="$AddFilenames $Names"
	1557
	1558	cd - > /dev/null
	1559	cd SOURCES_FOR_RUN_$fname
	1560
	1561	for dateiname in $AddFilenames
	1562	do
	1563	if [[ -f $dateiname ]]
	1564	then
	1565	printf "\n +++ source code file \"$dateiname\" found in additional"
	1566	printf "\n source code directory \"$add_source_path\" "
	1567	printf "\n as well as in directory \"$source_path\"."
	1568	locat=source; exit
	1569	fi
	1570
	1571	cp $add_source_path/$dateiname .
	1572	source_list="$source_list $dateiname"
	1573
	1574	# Default User-Interface von der Liste entfernen, falls Datei
	1575	# ein User-Interface enthaelt
	1576	if [[ $( cat $dateiname \| grep -c "END SUBROUTINE user_parin" ) != 0 ]]
	1577	then
[50]	1578	if [[ $dateiname != user_interface.f90 && -f user_interface.f90 ]]
[1]	1579	then
	1580	rm -rf user_interface.f90
	1581	source_list=`echo $source_list \| sed -e 's/user_interface.f90//'`
[50]	1582	printf "\n\n *** default \"user_interface.f90\" removed from the files to be translated"
[1]	1583	printf "\n since a user-interface is found in file"
	1584	printf "\n \"$add_source_path/$dateiname\" \n"
	1585	sleep 3
	1586	else
	1587	printf "\n\n *** user-interface file \"$dateiname\" "
	1588	printf "\n added to the files to be translated \n"
	1589	sleep 3
	1590	fi
	1591	fi
	1592	done
	1593
	1594	cd - > /dev/null
	1595	fi
	1596	fi
	1597
	1598
	1599	# ALLE UNTERPROGRAMME, DIE ZU VEREINBARTEN SOFTWAREPAKETEN GEHOEREN,
	1600	# DER LISTE DER ZU UEBERSETZENDEN DATEIEN HINZUFUEGEN
[5]	1601	if [[ $restart_run != true && -n $package_list ]]
[1]	1602	then
	1603
	1604	cd $source_path
	1605
	1606	for package in $package_list
	1607	do
	1608
	1609	[[ $package = "dvrp_graphics+1PE" ]] && package=dvrp_graphics
	1610
	1611	# ERMITTELE ALLE DATEIEN, DIE ZUM PAKET GEHOEREN
	1612	# FEHLERMELDUNGEN WERDEN ABGEFANGEN, DA * AUCH VERZEICHNISSNAMEN
	1613	# LIEFERT
	1614	package_source_list=`grep "defined( __$package " * 2>/dev/null \| cut -f1 -d:`
	1615
	1616
	1617	# FUEGE DIESE DATEIEN DER LISTE DER ZU UEBERSETZENDEN DATEIEN
	1618	# HINZU, FALLS SIE NOCH NICHT DAZUGEHOEREN
	1619	for source_list_name in $package_source_list
	1620	do
	1621	if [[ $(echo $source_list \| grep -c $source_list_name) = 0 ]]
	1622	then
	1623
	1624	# NUR DATEIEN MIT GUELTIGEN ENDUNGEN VERWENDEN
	1625	ending=`echo $source_list_name \| cut -f2 -d.`
	1626	if [[ "$ending" = f90 \|\| "$ending" = F90 \|\| "$ending" = f \|\| "$ending" = F \|\| "$ending" = c ]]
	1627	then
	1628	cp $source_list_name $working_directory/SOURCES_FOR_RUN_$fname
	1629	source_list="$source_list $source_list_name"
	1630	fi
	1631	fi
	1632	done
	1633	done
	1634
	1635	cd - > /dev/null
	1636	fi
	1637
	1638
	1639	# MAKEFILE AUF VORHANDENSEIN PRUEFEN UND KOPIEREN
	1640	# BEI RESTART-LAEUFEN LIEGT ES SCHON IM VERZEICHNIS SOURCES_FOR_RUN...
[82]	1641	if [[ "$restart_run" != true ]]
[1]	1642	then
	1643	[[ "$makefile" = "" ]] && makefile=$source_path/Makefile
	1644	if [[ ! -f $makefile ]]
	1645	then
	1646	printf "\n +++ file \"$makefile\" does not exist"
	1647	locat=make; exit
	1648	else
	1649	cp $makefile SOURCES_FOR_RUN_$fname/Makefile
	1650	fi
	1651	fi
	1652
	1653	fi # do_compile=true
	1654
	1655
	1656	# FALLS PROGRAMMTEILE UEBERSETZT WERDEN SOLLEN, FOLGEN JETZT EINIGE
	1657	# UEBERPRUEFUNGEN UND DAS SETZEN DER PRAEPROZESSOR-DIREKTIVEN
	1658	if [[ $do_compile = true ]]
	1659	then
	1660
	1661	# PRAEPROZESSOR-DIREKTIVEN ZUM SELEKTIVEN AUSWAEHLEN VON CODETEILEN
	1662	# ZUSAMMENSETZEN
[83]	1663	# DIREKTIVEN ZUM AKTIVIEREN VON RECHNERSPEZIFISCHEM CODE
[1]	1664	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1665	then
[82]	1666	cpp_options="${cpp_options},-D__ibm=__ibm"
[1]	1667	elif [[ $(echo $localhost \| cut -c1-3) = nec ]]
	1668	then
[82]	1669	cpp_options="$cpp_options -D__nec"
	1670	elif [[ $(echo $localhost \| cut -c1-2) = lc ]]
	1671	then
	1672	cpp_options="$cpp_options -D__lc"
[1]	1673	else
[82]	1674	cpp_options="$cpp_options -D__$localhost"
[1]	1675	fi
[83]	1676
	1677	# DIREKTIVEN DIE DURCH OPTION -K BESTIMMT WERDEN (Z.B. PARALLEL)
[1]	1678	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1679	then
[82]	1680	[[ -n $cond1 ]] && cpp_options="${cpp_options},-D__$cond1=__$cond1"
	1681	[[ -n $cond2 ]] && cpp_options="${cpp_options},-D__$cond2=__$cond2"
[1]	1682	else
[82]	1683	[[ -n $cond1 ]] && cpp_options="$cpp_options -D__$cond1"
	1684	[[ -n $cond2 ]] && cpp_options="$cpp_options -D__$cond2"
[1]	1685	fi
[83]	1686
	1687	# DIREKTIVEN DIE SOFTWAREPAKETE AKTIVIEREN (OPTION -p)
[1]	1688	if [[ -n $package_list ]]
	1689	then
	1690	for package in $package_list
	1691	do
	1692	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1693	then
	1694	if [[ $package != "dvrp_graphics+1PE" ]]
	1695	then
[82]	1696	cpp_options="${cpp_options},-D__$package=__$package"
[1]	1697	else
[82]	1698	cpp_options="${cpp_options},-D__dvrp_graphics=__dvrp_graphics"
[1]	1699	export use_seperate_pe_for_dvrp_output=true
	1700	fi
	1701	else
	1702	if [[ $package != "dvrp_graphics+1PE" ]]
	1703	then
[82]	1704	cpp_options="$cpp_options -D__$package"
[1]	1705	else
[82]	1706	cpp_options="$cpp_options -D__dvrp_graphics"
[1]	1707	export use_seperate_pe_for_dvrp_output=true
	1708	fi
	1709	fi
	1710	done
	1711	fi
[83]	1712
	1713	# DIREKTIVEN DIE DURCH OPTION -D FESTGELEGT SIND
[1]	1714	if [[ -n $cpp_opts ]]
	1715	then
	1716	for popts in $cpp_opts
	1717	do
[82]	1718	if [[ $(echo $localhost \| cut -c1-3) = ibm ]]
	1719	then
	1720	cpp_options="${cpp_options},-D__$popts=__$popts"
	1721	else
	1722	cpp_options="$cpp_options -D__$popts"
	1723	fi
[1]	1724	done
	1725	fi
	1726
	1727	else
	1728
	1729
	1730	# BEI LOKALEN RECHNUNGEN PRUEFEN, OB EXECUTABLE VORHANDEN
	1731	if [[ $do_remote = false ]]
	1732	then
	1733	if [[ ! -f $executable ]]
	1734	then
	1735	printf "\n +++ executable file: $executable"
	1736	printf "\n does not exist"
	1737	locat=executable; exit
	1738	fi
	1739	fi
	1740	fi
	1741
	1742
	1743	# JOBMODUS FESTSTELLEN
	1744	if [[ "$ENVIRONMENT" = BATCH && $localhost != lctit \|\| "$QUEUE" != interactive && $localhost = lctit ]]
	1745	then
	1746	jobmo=BATCH
	1747	else
	1748	jobmo=INTERACTIVE
	1749	fi
	1750
	1751
	1752	# HOSTSPEZIFISCHE DEFAULT-COMPILER SETZEN, FALLS NICHT BEREITS
	1753	# DURCH BENUTZER ANDERWEITIG VEREINBART
	1754	if [[ "$compiler_name" = "" ]]
	1755	then
[82]	1756
	1757	printf "\n +++ no compiler specified for \"$localhost $cond1 $cond2\""
	1758	locat=compiler_name; exit
	1759
[1]	1760	fi
	1761
	1762
	1763	# COMPILER AUF NECK UEBERSCHREIBEN
	1764	[[ $localhost = neck ]] && compiler_name=mpif90
	1765
	1766
	1767
	1768	# TEMPORAEREN KATALOGNAMEN BESTIMMEN
	1769	kennung=$RANDOM
	1770	if [[ "$tmp_user_catalog" = "" ]]
	1771	then
	1772	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1773	then
	1774	tmp_user_catalog=$TMPDIR
	1775	elif [[ $localhost = nech ]]
	1776	then
	1777	tmp_user_catalog=$WRKSHR
	1778	else
	1779	tmp_user_catalog=/tmp
	1780	fi
	1781	fi
	1782	TEMPDIR=$tmp_user_catalog/${usern}.$kennung
	1783
	1784
	1785	# KATALOGNAMEN FUER ZWISCHENSPEICHERUNG VON FORTSETZUNGSLAUFDATEIEN
	1786	# BESTIMMEN
	1787	if [[ "$tmp_data_catalog" = "" ]]
	1788	then
	1789	if [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	1790	then
	1791	tmp_data_catalog=$WORK/mrun_restart_data
	1792	elif [[ $localhost = nech ]]
	1793	then
	1794	tmp_data_catalog=$WRKSHR/mrun_restart_data
	1795	else
	1796	tmp_data_catalog=/tmp/mrun_restart_data
	1797	fi
	1798	fi
	1799
	1800
	1801	# EVENTUELL BEI LOKALEN RECHNUNGEN $-ZEICHEN IN ENVIRONMENT-VARIABLEN
	1802	# ERSETZEN
	1803	if [[ $do_remote = false && $do_compile = true ]]
	1804	then
	1805	eval fopts=\"$fopts\"
	1806	eval lopts=\"$lopts\"
	1807	fi
	1808
	1809
	1810
	1811	# COMPILE- UND LINK-OPTIONEN BESTIMMEN
[82]	1812	fopts="$fopts $netcdf_inc $dvrp_inc"
	1813	lopts="$lopts $netcdf_lib $dvrp_lib"
[1]	1814	ROPTS="$ropts"
[108]	1815	if [[ ( $(echo $host \| cut -c1-3) = nec \|\| $(echo $host \| cut -c1-3) = ibm \|\| $host = lctit \|\| $host = lcfimm ) && -n $numprocs ]]
[1]	1816	then
	1817	XOPT="-X $numprocs"
	1818	fi
	1819
	1820
	1821
	1822	# PRUEFEN DER CPU-ZEIT. (CPUMAX WIRD ALS ENV-VARIABLE VOM HAUTPRO-
	1823	# GRAMM BENOETIGT
	1824	done=false
	1825	while [[ $done = false ]]
	1826	do
	1827	cputime=$cpumax
	1828	if (( $cputime == 0 ))
	1829	then
	1830	printf "\n +++ cpu-time is undefined"
	1831	printf "\n >>> Please type CPU-time in seconds as INTEGER:"
	1832	printf "\n >>> "
	1833	read cputime 1>/dev/null 2>&1
	1834	else
	1835	done=true
	1836	fi
	1837	cpumax=$cputime
	1838	done
	1839
	1840	(( minuten = cputime / 60 ))
	1841	(( sekunden = cputime - minuten * 60 ))
	1842
	1843
	1844	# PRUEFEN DER KERNSPEICHERANFORDERUNG
	1845	if [[ $do_batch = true ]]
	1846	then
	1847	done=false
	1848	while [[ $done = false ]]
	1849	do
	1850	if (( memory == 0 ))
	1851	then
	1852	printf "\n +++ memory demand is undefined"
	1853	printf "\n >>> Please type memory in MByte per process as INTEGER:"
	1854	printf "\n >>> "
	1855	read memory 1>/dev/null 2>&1
	1856	else
	1857	done=true
	1858	fi
	1859	done
	1860	fi
	1861
	1862
	1863	# PRUEFEN, OB FUER REMOTE-RECHNUNGEN EIN BENUTZERNAME ANGEGEBEN WURDE
	1864	if [[ $do_remote = true && -z $remote_username ]]
	1865	then
	1866	while [[ -z $remote_username ]]
	1867	do
	1868	printf "\n +++ username on remote host \"$host\" is undefined"
	1869	printf "\n >>> Please type username:"
	1870	printf "\n >>> "
	1871	read remote_username
	1872	done
	1873	mc="$mc -u$remote_username"
	1874	fi
	1875
	1876	###########################################################################
	1877	# HEADER-AUSGABE
	1878	###########################################################################
	1879
	1880
	1881	calltime=$(date)
	1882	printf "\n"
	1883	# [[ $silent = false ]] && clear
	1884	printf "#--------------------------------------------------------------# \n"
	1885	printf "\| $version$calltime \| \n"
	1886	printf "\| \| \n"
	1887	spalte1="called on:"; spalte2=$localhost_realname
	1888	printf "\| $spalte1$spalte2 \| \n"
	1889	if [[ $local_compile = false ]]
	1890	then
	1891	if [[ $do_remote = true ]]
	1892	then
	1893	spalte1="execution on:"; spalte2="$host (username: $remote_username)"
	1894	else
	1895	spalte1="execution on:"; spalte2="$host ($localhost_realname)"
	1896	fi
	1897	else
	1898	spalte1="compiling test only!"; spalte2=""
	1899	fi
	1900	printf "\| $spalte1$spalte2 \| \n"
	1901	if [[ -n $numprocs ]]
	1902	then
	1903	spalte1="number of PEs:"; spalte2=$numprocs
	1904	printf "\| $spalte1$spalte2 \| \n"
	1905	fi
	1906	if [[ -n $tasks_per_node ]]
	1907	then
	1908	spalte1="tasks per node:"; spalte2="$tasks_per_node (number of nodes: $nodes)"
	1909	printf "\| $spalte1$spalte2 \| \n"
	1910	fi
	1911	if [[ $threads_per_task != 1 ]]
	1912	then
	1913	spalte1="threads per task:"; spalte2="$threads_per_task"
	1914	printf "\| $spalte1$spalte2 \| \n"
	1915	fi
	1916	printf "\| \| \n"
	1917	if [[ $do_compile = true ]]
	1918	then
[82]	1919	spalte1=cpp-directives:; spalte2=$cpp_options
[1]	1920	printf "\| $spalte1$spalte2 \| \n"
[82]	1921	zeile=$(echo "$cpp_options" \| cut -c41-)
[1]	1922	while [[ "$zeile" != "" ]]
	1923	do
	1924	spalte1=""
	1925	spalte2=$zeile
	1926	printf "\| $spalte1$spalte2 \| \n"
	1927	zeile=$(echo "$zeile" \| cut -c41-)
	1928	done
	1929
[82]	1930	spalte1=compiler-options:; spalte2="$fopts"
[1]	1931	printf "\| $spalte1$spalte2 \| \n"
[82]	1932	zeile=$(echo "$fopts" \| cut -c41-)
[1]	1933	while [[ "$zeile" != "" ]]
	1934	do
	1935	spalte1=""
	1936	spalte2=$zeile
	1937	printf "\| $spalte1$spalte2 \| \n"
	1938	zeile=$(echo "$zeile" \| cut -c41-)
	1939	done
	1940
[82]	1941	spalte1=linker-options:; spalte2=$lopts
[1]	1942	printf "\| $spalte1$spalte2 \| \n"
[82]	1943	zeile=$(echo "$lopts" \| cut -c41-)
[1]	1944	while [[ "$zeile" != "" ]]
	1945	do
	1946	spalte1=""
	1947	spalte2=$zeile
	1948	printf "\| $spalte1$spalte2 \| \n"
	1949	zeile=$(echo "$zeile" \| cut -c41-)
	1950	done
	1951
	1952	spalte1="main program":; spalte2=$mainprog
	1953	printf "\| $spalte1$spalte2 \| \n"
	1954	else
	1955	spalte1=executable:; spalte2=$executable
	1956	printf "\| $spalte1$spalte2 \| \n"
	1957	fi
	1958	printf "\| \| \n"
	1959	spalte1="base name of files":; spalte2=$fname
	1960	printf "\| $spalte1$spalte2 \| \n"
	1961	if [[ $fname != $afname ]]
	1962	then
	1963	spalte1="base name of input files":; spalte2=$afname
	1964	printf "\| $spalte1$spalte2 \| \n"
	1965	fi
	1966	spalte1="INPUT control list":; spalte2=$input_list
	1967	printf "\| $spalte1$spalte2 \| \n"
	1968	spalte1="OUTPUT control list":; spalte2=$output_list
	1969	printf "\| $spalte1$spalte2 \| \n"
	1970
	1971	if [[ $do_batch = true \|\| "$LOADLBATCH" = yes ]]
	1972	then
	1973	spalte1="memory demand / PE":; spalte2="$memory MB"
	1974	printf "\| $spalte1$spalte2 \| \n"
	1975	spalte1=CPU-time:; spalte2="$minuten:$sekunden"
	1976	printf "\| $spalte1$spalte2 \| \n"
	1977	fi
	1978
	1979	if [[ $do_compile = true ]]
	1980	then
	1981	printf "\| \| \n"
	1982	printf "\| Files to be compiled: \| \n"
	1983	zeile=$source_list
	1984	while [[ "$zeile" != "" ]]
	1985	do
	1986	spalte3=$zeile
	1987	printf "\| $spalte3 \| \n"
	1988	zeile=$(echo "$zeile" \| cut -c61-)
	1989	done
	1990	fi
	1991	printf "#--------------------------------------------------------------#"
	1992
	1993
	1994
	1995	# BEDINGTE AUSGABE DER DATEIVERBINDUNGEN
	1996	if [[ $do_trace = true ]]
	1997	then
	1998	(( i = 0 ))
	1999	while (( i < iin ))
	2000	do
	2001	(( i = i + 1 ))
	2002	if (( i == 1 ))
	2003	then
	2004	printf "\n\n >>> INPUT-file assignments:\n"
	2005	fi
	2006	printf "\n ${localin[$i]} : ${absnamein[$i]}"
	2007	done
	2008	(( i = 0 ))
	2009	while (( i < iout ))
	2010	do
	2011	(( i = i + 1 ))
	2012	if (( i == 1 ))
	2013	then
	2014	printf "\n\n >>> OUTPUT-file assignments:\n"
	2015	fi
	2016	printf "\n ${localout[$i]} : ${pathout[$i]}"
	2017	done
	2018	(( i = 0 ))
	2019	while (( i < iic ))
	2020	do
	2021	(( i = i + 1 ))
	2022	if (( i == 1 ))
	2023	then
	2024	printf "\n\n >>> INPUT-commands:\n"
	2025	fi
	2026	printf "\n ${in_command[$i]}"
	2027	done
	2028	(( i = 0 ))
	2029	while (( i < ioc ))
	2030	do
	2031	(( i = i + 1 ))
	2032	if (( i == 1 ))
	2033	then
	2034	printf "\n\n >>> OUTPUT-commands:\n"
	2035	fi
	2036	printf "\n ${out_command[$i]}"
	2037	done
	2038	fi
	2039
	2040
	2041	# ABFRAGEN BEI AUFRUF AUF LOKALER MASCHINE
	2042	if [[ $remotecall = false && $silent = false && $jobmo != BATCH ]]
	2043	then
	2044	antwort=dummy
	2045	printf "\n\n"
	2046	while [[ "$antwort" != y && "$antwort" != Y && "$antwort" != n && "$antwort" != N ]]
	2047	do
	2048	printf " >>> everything o.k. (y/n) ? "
	2049	read antwort
	2050	done
	2051	if [[ $antwort = n \|\| $antwort = N ]]
	2052	then
	2053	locat=user_abort; (( iec = 0 )); exit
	2054	fi
	2055	if [[ $do_batch = true ]]
	2056	then
	2057	printf " >>> batch-job will be created and submitted"
	2058	else
	2059	if [[ $local_compile = false ]]
	2060	then
	2061	printf " >>> MRUN will now continue to execute on this machine"
	2062	else
	2063	printf " >>> a test compilation will now be carried out on this machine"
	2064	fi
	2065	fi
	2066	fi
	2067
	2068
	2069
	2070
	2071	# FALLS AUF DIESER MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	2072	# CHENDE AKTIONEN DURCHGEFUEHRT
	2073	if [[ $do_batch = false ]]
	2074	then
	2075
	2076
	2077	# TEMPORAEREN KATALOG ERZEUGEN
	2078	mkdir -p $TEMPDIR
	2079	chmod go+rx $TEMPDIR
	2080	tmpcreate=true
	2081
	2082
	2083	# SAEMTLICHE QUELLTEXT-DATEIEN BZW. AUSFUEHRBARES PROGRAMM IN
	2084	# TEMPORAERES VERZEICHNIS KOPIEREN
	2085	if [[ $do_compile = true ]]
	2086	then
	2087
	2088	# ON NEC, COMPILATION IS DONE ON HOST CROSS VIA CROSS COMPILING
	2089	# CREATE A TEMPORARY DIRECTORY ON THAT MACHINE (HOME MOUNTED VIA NFS)
	2090	if [[ $localhost = nech ]]
	2091	then
	2092	TEMPDIR_COMPILE=$HOME/work/${usern}.$kennung
	2093	if mkdir -p $TEMPDIR_COMPILE
	2094	then
	2095	printf "\n *** \"$TEMPDIR_COMPILE\" "
	2096	printf "\n is generated as temporary directory for cross compiling\n"
	2097	else
	2098	printf "\n +++ creating directory \"$TEMPDIR_COMPILE\" "
	2099	printf "\n needed for cross compilation failed"
	2100	locat=compile
	2101	exit
	2102	fi
	2103	else
	2104	TEMPDIR_COMPILE=$TEMPDIR
	2105	fi
	2106
	2107
[82]	2108	# PFADNAMEN FUER DAS MAKE-DEPOSITORY ERMITTELN
	2109	line=""
	2110	grep "%depository_path" $config_file > tmp_mrun
	2111	while read line
	2112	do
	2113	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
	2114	then
	2115	if [[ "$(echo $line \| cut -d" " -s -f3)" = "" ]]
[1]	2116	then
[82]	2117	global_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2118	fi
[82]	2119	fi
	2120	done < tmp_mrun
[1]	2121
[82]	2122	line=""
	2123	grep " $localhost" $config_file \| grep "%depository_path" > tmp_mrun
	2124	while read line
	2125	do
	2126	if [[ "$line" != "" && $(echo $line \| cut -c1) != "#" ]]
[1]	2127	then
[82]	2128	local_depository_path=`echo $line \| cut -d" " -s -f2`
[1]	2129	fi
[82]	2130	done < tmp_mrun
[1]	2131
[82]	2132	if [[ "$local_depository_path" = "" ]]
	2133	then
	2134	if [[ "$global_depository_path" != "" ]]
[1]	2135	then
[82]	2136	local_depository_path=$global_depository_path
[1]	2137	else
[82]	2138	printf "\n\n +++ no depository path found in configuration file"
	2139	printf "\n for local host \"$localhost\" "
	2140	printf "\n please set \"\%depository_path\" in configuration file\n"
	2141	locat=config_file; exit
[1]	2142	fi
[82]	2143	fi
	2144	eval local_depository_path=$local_depository_path
[1]	2145
[82]	2146	basename=`print $mainprog \| cut -f1 -d"."`
	2147	eval make_depository=${local_depository_path}/${basename}_current_version.tar
	2148	if [[ ! -f $make_depository ]]
	2149	then
	2150	printf "\n"
	2151	printf "\n *** WARNING: make depository \"$make_depository\" not found"
	2152	printf "\n \"make\" will fail, if the Makefile or other source files are missing\n"
	2153	else
	2154	cp $make_depository $TEMPDIR_COMPILE
[1]	2155	cd $TEMPDIR_COMPILE
[82]	2156	tar -xf $make_depository > /dev/null 2>&1
[1]	2157	cd - > /dev/null
	2158	fi
[82]	2159
	2160	cp SOURCES_FOR_RUN_$fname/* $TEMPDIR_COMPILE
	2161
	2162	# FALLS USER-INTERFACE VORHANDEN UND AUF DATEI MIT ANDEREM NAMEN
	2163	# ALS user_interface.f90 LIEGT, DIESEN GEAENDERTEN NAMEN INS
	2164	# MAKEFILE EINTRAGEN
	2165	cd $TEMPDIR_COMPILE
	2166	interface_file=`grep -l "END SUBROUTINE user_parin" $source_list`
	2167	if [[ "$interface_file" != "" ]]
	2168	then
	2169	interface_file=`echo $interface_file \| cut -d"." -f1`
	2170	mv Makefile Makefile_old
	2171	sed "s/user_interface/$interface_file/g" Makefile_old > Makefile
	2172	fi
	2173	cd - > /dev/null
[1]	2174	else
	2175	cp $executable ${TEMPDIR}/a.out
	2176	fi
	2177
	2178
	2179	# WECHSEL IN TEMPORAEREN KATALOG
	2180	cd $TEMPDIR
	2181	printf "\n *** changed to temporary directory: $TEMPDIR"
	2182
	2183
	2184	# OUTPUT-DATEI-VERBINDUNGEN AUF TEMPORAERER DATEI ABLEGEN
	2185	# DIESE DATEI KANN VON SPAETER AUFZURUFENDEN BENUTZERPROZEDUREN GELESEN
	2186	# WERDEN, UM ZU LOKALEN DATEINAMEN GEHOERENDE PERMANENTE NAMEN ZU
	2187	# ERMITTELN
	2188	(( i = 0 ))
	2189	while (( i < iout ))
	2190	do
	2191	(( i = i + 1 ))
	2192	if [[ "${actionout[$i]}" = tr \|\| "${actionout[$i]}" = tra \|\| "${actionout[$i]}" = trpe ]]
	2193	then
	2194	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${localhost}_${fname}${endout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2195	else
	2196	printf "${localout[$i]} ${actionout[$i]}\n${pathout[$i]}\n${frelout[$i]}\n" >> OUTPUT_FILE_CONNECTIONS
	2197	fi
	2198	done
	2199
	2200
	2201	# EVTL. UEBERSETZUNGSAKTIONEN STARTEN
	2202	if [[ $do_compile = true ]]
	2203	then
	2204
	2205
	2206	# COMPILING WITH MAKE (ON NEC COMPILER IS CALLED ON HOST CROSS)
[82]	2207	printf "\n\n\n *** compilation starts \n$striche\n"
	2208	printf " *** compilation with make using following options:\n"
	2209	printf " compilername: $compiler_name\n"
	2210	printf " options: $fopts\n"
	2211	printf " preprocessor-directives: $cpp_options \n"
	2212	printf " linker-options: $lopts \n"
	2213	printf " source code files: $source_list \n"
	2214
	2215	if [[ $localhost = nech ]]
[1]	2216	then
[82]	2217	ssh 136.172.44.192 -l $usern ". /SX/opt/etc/initsx.sh; cd \$HOME/work/${usern}.$kennung; sxmake -f Makefile PROG=a.out F90=$compiler_name COPT=\"$cpp_options\" F90FLAGS=\"$fopts\" LDFLAGS=\"$lopts\" "
	2218	cp $TEMPDIR_COMPILE/a.out .
	2219	[[ $? != 0 ]] && compile_error=true
	2220	rm -rf $TEMPDIR_COMPILE
[1]	2221	else
[118]	2222	[[ $localhost = lctit ]] && export LM_LICENSE_FILE=27050@tggls
[82]	2223	make -f Makefile PROG=a.out F90=$compiler_name COPT="$cpp_options" F90FLAGS="$fopts" LDFLAGS="$lopts"
	2224	fi
[1]	2225
	2226	if [[ $? != 0 \|\| "$compile_error" = true \|\| "$module_compile_error" = true ]]
	2227	then
	2228	printf "\n +++ error occured while compiling or linking"
	2229	locat=compile
	2230	exit
	2231	else
	2232	printf "$striche\n *** compilation finished \n"
	2233	fi
	2234	fi
	2235
	2236
	2237	# FALLS NUR TESTWEISE KOMPILIERT WERDEN SOLLTE, IST MRUN JETZT FERTIG
	2238	if [[ $local_compile = true ]]
	2239	then
	2240	cd $HOME
	2241	rm -rf $TEMPDIR
	2242	locat=local_compile; exit
	2243	fi
	2244
	2245
	2246	# BEREITSTELLEN DER INPUT-DATEIEN
	2247	# SCHLEIFE UEBER ALLE VOM BENUTZER ANGEGEBENEN DATEIEN
	2248	(( i = 0 ))
	2249	while (( i < iin ))
	2250	do
	2251	(( i = i + 1 ))
	2252	if (( i == 1 ))
	2253	then
	2254	printf "\n\n *** providing INPUT-files:\n$striche"
	2255	fi
	2256
	2257
	2258	# OPTIONALE DATEIEN BEI NICHTVORHANDENSEIN UEBERGEHEN
	2259	if [[ "${transin[$i]}" = unavailable ]]
	2260	then
	2261	if [[ "${extin[$i]}" = "" \|\| "${extin[$i]}" = " " ]]
	2262	then
	2263	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}\" "
	2264	printf "\n is not available!"
	2265	else
	2266	printf "\n +++ WARNING: input file \"${pathin[$i]}/${afname}${endin[$i]}.${extin[$i]}\" "
	2267	printf "\n is not available!"
	2268	fi
	2269	continue
	2270	fi
	2271
	2272	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2273	files_for_pes=false; datentyp=file
	2274	if [[ "${actionin[$i]}" = pe && -n $numprocs ]]
	2275	then
	2276	files_for_pes=true; datentyp=directory
	2277	actionin[$i]=""
	2278	elif [[ "${actionin[$i]}" = pe && ! -n $numprocs ]]
	2279	then
	2280	actionin[$i]=""
	2281	elif [[ "${actionin[$i]}" = arpe && -n $numprocs ]]
	2282	then
	2283	files_for_pes=true; datentyp=directory
	2284	actionin[$i]="ar"
	2285	elif [[ "${actionin[$i]}" = arpe && ! -n $numprocs ]]
	2286	then
	2287	actionin[$i]="ar"
	2288	elif [[ "${actionin[$i]}" = flpe && -n $numprocs ]]
	2289	then
	2290	files_for_pes=true; datentyp=directory
	2291	actionin[$i]="fl"
	2292	elif [[ "${actionin[$i]}" = flpe && ! -n $numprocs ]]
	2293	then
	2294	actionin[$i]="fl"
	2295	fi
	2296
	2297	if [[ $files_for_pes = true ]]
	2298	then
	2299	printf "\n >>> INPUT: ${absnamein[$i]}/.... to ${localin[$i]}"
	2300	else
	2301	printf "\n >>> INPUT: ${absnamein[$i]} to ${localin[$i]}"
	2302	fi
	2303
	2304	# INPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. ES WIRD GEPRUEFT,
	2305	# OB DIESE DATEI NOCH AUF DEM TEMPORAEREN DATENKATALOG VORHANDEN
	2306	# IST. FALLS NICHT, WIRD VERSUCHT, SIE ANSCHLIESSEND VOM ARCHIV-
	2307	# SERVER ZU HOLEN
	2308	if [[ "${actionin[$i]}" = fl ]]
	2309	then
	2310	printf "\n $datentyp will be fetched from temporary directory \"${tmp_data_catalog}\" !"
	2311	if [[ $files_for_pes = false ]]
	2312	then
	2313	if [[ -f "$tmp_data_catalog/${frelin[$i]}" ]]
	2314	then
	2315	ln $tmp_data_catalog/${frelin[$i]} ${localin[$i]}
	2316	got_tmp[$i]=true
	2317	elif [[ -f "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2318	then
	2319	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2320	printf "\n *** trying to use backup copy in \"$WORK\" "
	2321	cp $WORK/${frelin[$i]} ${localin[$i]}
	2322	else
	2323	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2324	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2325	printf "\n *** trying to get copy from archive"
	2326	actionin[$i]=ar
	2327	fi
	2328	else
	2329	if [[ -d "$tmp_data_catalog/${frelin[$i]}" ]]
	2330	then
	2331	mkdir ${localin[$i]}
	2332	ln $tmp_data_catalog/${frelin[$i]}/* ${localin[$i]}
	2333	got_tmp[$i]=true
	2334	elif [[ -d "$WORK/${frelin[$i]}" && $ignore_archive_error = true ]]
	2335	then
	2336	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" !"
	2337	printf "\n *** trying to use backup copy in \"$WORK\" "
	2338	cp -r $WORK/${frelin[$i]} ${localin[$i]}
	2339	else
	2340	printf "\n +++ $datentyp not found in \"$tmp_data_catalog\" "
	2341	printf "\n or \"$tmp_data_catalog\" does not exist!"
	2342	printf "\n *** trying to get copy from archive"
	2343	actionin[$i]=ar
	2344	fi
	2345	fi
	2346	fi
	2347
	2348
	2349	# DATEI LIEGT AUF ARCHIV-SERVER
	2350	if [[ "${actionin[$i]}" = ar ]]
	2351	then
	2352
	2353	if [[ $files_for_pes = false ]]
	2354	then
	2355	printf "\n file will be restored from archive-system ($archive_system)!"
	2356	else
	2357	printf "\n directory will be restored from archive-system ($archive_system)!"
	2358	fi
	2359
	2360	file_restored=false
	2361
	2362	if [[ $archive_system = asterix ]]
	2363	then
	2364	do_stagein=true
	2365	(( stagein_anz = 0 ))
	2366	while [[ $do_stagein = true ]]
	2367	do
	2368	if [[ $files_for_pes = false ]]
	2369	then
	2370	stagein -O ${frelin[$i]} > STAGEIN_OUTPUT
	2371	else
	2372	stagein -t -O ${frelin[$i]} > STAGEIN_OUTPUT
	2373	fi
	2374	cat STAGEIN_OUTPUT
	2375	if [[ $(grep -c "st.msg:i24" STAGEIN_OUTPUT) != 0 ]]
	2376	then
	2377	file_restored=true
	2378	do_stagein=false
	2379	else
	2380	(( stagein_anz = stagein_anz + 1 ))
	2381	if (( stagein_anz == 10 ))
	2382	then
	2383	printf "\n +++ stagein stoped after 10 tries"
	2384	locat=stage
	2385	exit
	2386	fi
	2387	printf "\n +++ restoring from archive failed, trying again:"
	2388	sleep 900
	2389	fi
	2390	done
	2391	elif [[ $archive_system = DMF ]]
	2392	then
	2393	if [[ $files_for_pes = false ]]
	2394	then
	2395	printf "\n +++ restoring of single files impossible with $archive_system !\n"
	2396	locat=DMF
	2397	exit
	2398	else
	2399	find $ARCHIVE/${frelin[$i]} -type m -print \| dmget
	2400	cp -r $ARCHIVE/${frelin[$i]} $PWD
	2401	file_restored=true
	2402	fi
	2403	elif [[ $archive_system = tivoli ]]
	2404	then
	2405	if [[ $files_for_pes = false ]]
	2406	then
	2407	if [[ $localhost = ibmh ]]
	2408	then
	2409	ssh $usern@hdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2410	else
	2411	ssh $usern@bdata.hlrn.de "cp $PERM/${frelin[$i]} $PWD"
	2412	fi
	2413	else
	2414	(( inode = 0 ))
	2415	while (( inode < nodes ))
	2416	do
	2417	if [[ $localhost = ibmh ]]
	2418	then
	2419	ssh $usern@hdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2420	else
	2421	ssh $usern@bdata.hlrn.de "cd $PWD; tar xf $PERM/${frelin[$i]}/${frelin[$i]}.node_$inode.tar"
	2422	fi
	2423	(( inode = inode + 1 ))
	2424	done
	2425	fi
	2426	file_restored=true
	2427	elif [[ $archive_system = ut ]]
	2428	then
	2429	if [[ $files_for_pes = false ]]
	2430	then
	2431	cp $UT/${frelin[$i]} .
	2432	else
	2433	(( inode = 0 ))
	2434	while (( inode < nodes ))
	2435	do
	2436	tar xf $UT/${frelin[$i]}/${frelin[$i]}.node_$inode.tar
	2437	(( inode = inode + 1 ))
	2438	done
	2439	fi
	2440	file_restored=true
	2441	else
	2442	printf "\n +++ archive_system=\"$archive_system\" restore impossible!"
	2443	locat=rearchive
	2444	exit
	2445	fi
	2446
	2447	if [[ $file_restored = true ]]
	2448	then
	2449
	2450	# DATEI AUCH AUF TEMPORAERES DATENVERZEICHNIS LEGEN, DAMIT
	2451	# SIE BEI WEITEREN ZUGRIFFEN NOCH VORHANDEN IST
	2452	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog; chmod g+rx $tmp_data_catalog
	2453	if [[ $files_for_pes = false ]]
	2454	then
	2455	ln -f ${frelin[$i]} $tmp_data_catalog/${frelin[$i]}
	2456	else
	2457	mkdir $tmp_data_catalog/${frelin[$i]}
	2458	ln -f ${frelin[$i]}/* $tmp_data_catalog/${frelin[$i]}
	2459	fi
	2460	got_tmp[$i]=true
	2461
	2462	# DATEI UNTER LOKALEM NAMEN ZUR VERFUEGUNG STELLEN
	2463	mv ${frelin[$i]} ${localin[$i]}
	2464
	2465	fi
	2466	fi
	2467
	2468
	2469	# DATEI LIEGT IM VOM BENUTZER ANGEGEBENEN VERZEICHNIS
	2470	if [[ "${actionin[$i]}" = "" \|\| "${actionin[$i]}" = "di" \|\| "${actionin[$i]}" = "npe" ]]
	2471	then
	2472
	2473	if [[ "${actionin[$i]}" = "npe" && -n $numprocs ]]
	2474	then
	2475
	2476	# DATEI WIRD FUER DIE PROZESSOREN EINES PARALLERECHNERS BEREITGESTELLT
	2477	printf "\n file will be provided for $numprocs processors"
	2478	mkdir ${localin[$i]}
	2479	ival=$numprocs
	2480	(( ii = 0 ))
	2481	while (( ii <= ival-1 ))
	2482	do
	2483	if (( ii < 10 ))
	2484	then
	2485	cp ${absnamein[$i]} ${localin[$i]}/_000$ii
	2486	elif (( ii < 100 ))
	2487	then
	2488	cp ${absnamein[$i]} ${localin[$i]}/_00$ii
	2489	elif (( ii < 1000 ))
	2490	then
	2491	cp ${absnamein[$i]} ${localin[$i]}/_0$ii
	2492	else
	2493	cp ${absnamein[$i]} ${localin[$i]}/_$ii
	2494	fi
	2495	(( ii = ii + 1 ))
	2496	done
	2497
	2498	else
	2499
	2500	if [[ $files_for_pes = true ]]
	2501	then
	2502
	2503	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	2504	# DATEIEN WERDEN BEREITGESTELLT, INDEM ZUERST DER GESAMTE
	2505	# KATALOGINHALT KOPIERT UND DANN DIE EINZELNEN DATEIEN
	2506	# PER MOVE UMBENANNT WERDEN
	2507	printf "\n providing $numprocs files for the respective processors"
	2508	mkdir ${localin[$i]}
	2509	cp -r ${absnamein[$i]}/* ${localin[$i]}
	2510
	2511	else
	2512	# BEREITSTELLUNG AUF EINPROZESSORRECHNERN
	2513	cp ${absnamein[$i]} ${localin[$i]}
	2514	fi
	2515	fi
	2516	fi
	2517
	2518	done
	2519	if (( i != 0 ))
	2520	then
	2521	printf "\n$striche\n *** all INPUT-files provided \n"
	2522	fi
	2523
	2524
	2525	# NAMELIST-DATEI MIT WERTEN VON ENVIRONMENT-VARIABLEN ERZEUGEN (ZU
	2526	# LESEN VON PALM)
	2527	cat > ENVPAR << %%END%%
	2528	&envpar run_identifier = '$fname', host = '$localhost',
	2529	write_binary = '$write_binary', tasks_per_node = $tasks_per_node,
[75]	2530	maximum_cpu_time_allowed = ${cpumax}.,
	2531	revision = '$global_revision' /
[1]	2532
	2533	%%END%%
	2534
	2535
	2536	# EVENTUELLE INPUT-KOMMANDOS ABARBEITEN
	2537	(( i = 0 ))
	2538	while (( i < iic ))
	2539	do
	2540	(( i = i + 1 ))
	2541	if (( i == 1 ))
	2542	then
	2543	printf "\n\n *** execution of INPUT-commands:\n$striche"
	2544	fi
	2545	printf "\n >>> ${in_command[$i]}"
	2546	eval ${in_command[$i]}
	2547	if (( i == iic ))
	2548	then
	2549	printf "\n$striche\n"
	2550	fi
	2551	done
	2552
	2553
	2554	# VERBLEIBENDE CPU-ZEIT BERECHNEN
	2555	cpurest=${cpumax}.
	2556
	2557
	2558	# PROGRAMMSTART
	2559	printf "\n\n *** execution starts in directory\n \"`pwd`\"\n$striche\n"
	2560	PATH=$PATH:$TEMPDIR
	2561
	2562	if [[ "$cond1" = debug \|\| "$cond2" = debug ]]
	2563	then
	2564	if [[ "$ENVIRONMENT" = BATCH ]]
	2565	then
	2566	printf "\n +++ debug is allowed in interactive mode only"
	2567	locat=debug
	2568	exit
	2569	fi
[5]	2570	if [[ $localhost = decalpha ]]
[1]	2571	then
	2572	dxladebug a.out
	2573	elif [[ $localhost = ibmb \|\| $localhost = ibmh ]]
	2574	then
	2575
	2576	# SETUP THE IBM MPI ENVIRONMENT
	2577	export MP_SHARED_MEMORY=yes
	2578	export AIXTHREADS_SCOPE=S
	2579	export OMP_NUM_THREADS=$threads_per_task
	2580	export AUTHSTATE=files
	2581	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2582
	2583	# FOLLOWING OPTIONS ARE MANDATORY FOR TOTALVIEW
	2584	export MP_ADAPTER_USE=shared
	2585	export MP_CPU_USE=multiple
	2586	export MP_TIMEOUT=1200
	2587
	2588	unset MP_TASK_AFFINITY
	2589
	2590	# SO FAR, TOTALVIEW NEEDS HOSTFILE MECHANISM FOR EXECUTION
	2591	#(( ii = 1 ))
	2592	#while (( ii <= $numprocs ))
	2593	#do
	2594	# echo $localhost_realname >> hostfile
	2595	# (( ii = ii + 1 ))
	2596	#done
	2597	#export MP_HOSTFILE=hostfile
	2598
	2599	if [[ "$LOADLBATCH" = yes ]]
	2600	then
	2601	totalview poe a.out $ROPTS
	2602	else
	2603	echo totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2604	export TVDSVRLAUNCHCMD=ssh
	2605	totalview poe -a a.out -procs $numprocs -rmpool 0 -nodes 1 $ROPTS
	2606	fi
	2607	else
	2608	printf "\n +++ no debug available on \"$localhost\" "
	2609	printf "\n or not implemented in mrun so far"
	2610	locat=debug
	2611	exit
	2612	fi
	2613	else
	2614	if [[ -n $numprocs ]]
	2615	then
	2616
	2617	# RUNNING THE PROGRAM ON PARALLEL MACHINES
	2618	if [[ $(echo $host \| cut -c1-3) = ibm ]]
	2619	then
	2620	# SETUP THE IBM MPI ENVIRONMENT
	2621	export MP_SHARED_MEMORY=yes
	2622	export AIXTHREAD_SCOPE=S
	2623	export OMP_NUM_THREADS=$threads_per_task
	2624	export XLSMPOPTS="spins=0:yields=0:stack=20000000"
	2625	export AUTHSTATE=files
	2626	export XLFRTEOPTS="nlwidth=132:err_recovery=no" # RECORD-LENGTH OF NAMELIST-OUTPUT
	2627	# export MP_PRINTENV=yes
	2628
	2629	# TUNING-VARIABLEN ZUR VERBESSERUNG DER KOMMUNIKATION
	2630	# ZEIGEN ABER DERZEIT (SEP 04, FEDERATION) KAUM WIRKUNG
	2631	export MP_WAIT_MODE=poll
	2632	[[ $node_usage = not_shared ]] && export MP_SINGLE_THREAD=yes
	2633	# export MP_EAGER_LIMIT=65535
	2634
	2635	# # TESTWEISE FUER TURBOMPI (JAN 05)
	2636	# export MPJ_MTAB=128
	2637	# export MPJ_ALLTOALL=1
	2638	# export MPJ_ALLTOALLV=1
	2639
	2640	if [[ "$LOADLBATCH" = yes ]]
	2641	then
	2642	printf "\n--- Control: OMP_NUM_THREADS = \"$OMP_NUM_THREADS\" \n"
	2643	if [[ "$cond1" = hpmcount \|\| "$cond2" = hpmcount ]]
	2644	then
[102]	2645	/opt/optibm/HPM_2_4_1/bin/hpmcount a.out $ROPTS
[1]	2646	else
[102]	2647	poe ./a.out $ROPTS
[1]	2648	fi
	2649	else
	2650	if [[ $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms ]]
	2651	then
[102]	2652	poe a.out -procs $numprocs -nodes 1 -rmpool 0 $ROPTS
[1]	2653	elif [[ $localhost = ibmy ]]
	2654	then
	2655	if [[ -f $hostfile ]]
	2656	then
	2657	cp $hostfile hostfile
	2658	else
	2659	(( ii = 1 ))
	2660	while (( ii <= $numprocs ))
	2661	do
	2662	echo $localhost_realname >> hostfile
	2663	(( ii = ii + 1 ))
	2664	done
	2665	fi
	2666	export MP_HOSTFILE=hostfile
[102]	2667	./a.out -procs $tasks_per_node $ROPTS
[1]	2668	else
	2669	if [[ "$host_file" = "" ]]
	2670	then
	2671	printf "\n +++ no hostfile given in configuration file"
	2672	locat=config_file
	2673	exit
	2674	else
	2675	eval host_file=$host_file
	2676	fi
	2677	export MP_HOSTFILE=$host_file
[102]	2678	poe a.out -procs $numprocs -tasks_per_node $numprocs $ROPTS
[1]	2679	fi
	2680	fi
	2681	elif [[ $host = nech \|\| $host = neck ]]
	2682	then
	2683	(( ii = nodes ))
	2684	if [[ $ii = 1 ]]
	2685	then
	2686	export F_ERRCNT=0 # acceptable number of errors before program is stopped
	2687	export MPIPROGINF=YES
[61]	2688	# export F_TRACE=YES\|FMT1\|FMT2 # output of ftrace informations to job protocol
[1]	2689	echo "*** execution on single node with mpirun"
[102]	2690	mpirun -np $numprocs ./a.out $ROPTS
[1]	2691	else
	2692	(( i = 0 ))
	2693	while (( i < ii ))
	2694	do
	2695	echo "-h $i -p $tasks_per_node -e ./mpi_exec_shell" >> multinode_config
	2696	(( i = i + 1 ))
	2697	done
	2698
	2699	echo "#!/bin/sh" > mpi_exec_shell
	2700	echo " " >> mpi_exec_shell
	2701	echo "set -u" >> mpi_exec_shell
	2702	echo "F_ERRCNT=0" >> mpi_exec_shell
	2703	echo "MPIPROGINV=YES" >> mpi_exec_shell
	2704	echo "OMP_NUM_THREADS=$threads_per_task" >> mpi_exec_shell
	2705	echo "cpurest=$cpurest" >> mpi_exec_shell
	2706	echo "fname=$fname" >> mpi_exec_shell
	2707	echo "localhost=$localhost" >> mpi_exec_shell
	2708	echo "return_addres=$return_addres" >> mpi_exec_shell
	2709	echo "return_username=$return_username" >> mpi_exec_shell
	2710	echo "tasks_per_node=$tasks_per_node" >> mpi_exec_shell
	2711	echo "write_binary=$write_binary" >> mpi_exec_shell
	2712	echo "use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	2713	echo " " >> mpi_exec_shell
	2714	echo "export F_ERRCNT" >> mpi_exec_shell
	2715	echo "export MPIPROGINV" >> mpi_exec_shell
	2716	echo "export OMP_NUM_THREADS" >> mpi_exec_shell
	2717	echo "export cpurest" >> mpi_exec_shell
	2718	echo "export fname" >> mpi_exec_shell
	2719	echo "export localhost" >> mpi_exec_shell
	2720	echo "export return_addres" >> mpi_exec_shell
	2721	echo "export return_username" >> mpi_exec_shell
	2722	echo "export tasks_per_node" >> mpi_exec_shell
	2723	echo "export write_binary" >> mpi_exec_shell
	2724	echo "export use_seperate_pe_for_dvrp_output" >> mpi_exec_shell
	2725	echo " " >> mpi_exec_shell
[102]	2726	echo "exec ./a.out" >> mpi_exec_shell
[1]	2727
	2728	chmod u+x mpi_exec_shell
	2729	export MPIPROGINF=YES
	2730	mpirun -f multinode_config &
	2731	wait
	2732
	2733	fi
[82]	2734	elif [[ $(echo $host \| cut -c1-2) = lc && $host != lctit ]]
[1]	2735	then
	2736
	2737	# COPY HOSTFILE FROM SOURCE DIRECTORY OR CREATE IT, IF IT
	2738	# DOES NOT EXIST
	2739	if [[ -f $hostfile ]]
	2740	then
	2741	cp $hostfile hostfile
	2742	else
	2743	(( ii = 1 ))
	2744	while (( ii <= $numprocs / $threads_per_task ))
	2745	do
	2746	echo $localhost_realname >> hostfile
	2747	(( ii = ii + 1 ))
	2748	done
	2749	fi
	2750	(( ii = $numprocs / $threads_per_task ))
	2751	eval zeile=\"`head -n $ii hostfile`\"
	2752	printf "\n *** running on: $zeile"
	2753	export OMP_NUM_THREADS=$threads_per_task
	2754	if [[ $threads_per_task != 1 ]]
	2755	then
	2756	printf "\n threads per task: $threads_per_task"
	2757	fi
[102]	2758	if [[ $run_coupled_model = false ]]
[1]	2759	then
[102]	2760	printf "\n\n"
[109]	2761	mpiexec -machinefile hostfile -n $ii a.out $ROPTS
[1]	2762	else
[102]	2763	(( iii = ii / 2 ))
	2764	printf "\n coupled run ($iii atmosphere, $iii ocean)"
	2765	printf "\n\n"
[109]	2766	mpiexec -machinefile hostfile -n $iii -env coupling_mode atmosphere_to_ocean a.out $ROPTS &
	2767	mpiexec -machinefile hostfile -n $iii -env coupling_mode ocean_to_atmosphere a.out $ROPTS &
[102]	2768	wait
[1]	2769	fi
[102]	2770
	2771	# if [[ $scirocco = true ]]
	2772	# then
	2773	# mpiexec -machinefile hostfile -n $ii a.out $ROPTS
	2774	# else
	2775	# mpirun -machinefile hostfile -np $ii a.out $ROPTS
	2776	# fi
	2777
[1]	2778	elif [[ $host = decalpha ]]
	2779	then
[102]	2780	dmpirun -np $numprocs a.out $ROPTS
[1]	2781	elif [[ $host = lctit ]]
	2782	then
	2783	export runfile=runfile.$kennung
	2784
	2785	echo "cd $PWD" > $runfile
	2786	echo "export OMP_NUM_THREADS=$OMP_NUM_THREADS" >> $runfile
	2787	echo "export cpurest=$cpurest" >> $runfile
	2788	echo "export fname=$fname" >> $runfile
	2789	echo "export localhost=$localhost" >> $runfile
	2790	echo "export return_addres=$return_addres" >> $runfile
	2791	echo "export return_username=$return_username" >> $runfile
	2792	echo "export tasks_per_node=$tasks_per_node" >> $runfile
	2793	echo "export write_binary=$write_binary" >> $runfile
	2794	echo "export use_seperate_pe_for_dvrp_output=$use_seperate_pe_for_dvrp_output" >> $runfile
	2795	echo "./a.out" >> $runfile
	2796	chmod u+x $runfile
	2797
	2798	if [[ "$QUEUE" = interactive ]]
	2799	then
[102]	2800	mpirun -np $numprocs a.out $ROPTS
[1]	2801	else
[127]	2802	(( mem_tsubame = $memory / 1024.0 ))
	2803	echo "Memory for Tsubame for each process in GB:", $mem_tsubame
[118]	2804	# n1ge -fore -g 1S060156 -mpi $numprocs -mem 4 -N palm -q $queue a.out $ROPTS
[126]	2805	/n1ge/TITECH_GRID/tools/bin/n1ge -fore -g $group_number -mpi ${numprocs}:$tasks_per_node -mem $mem_tsubame -N palm -rt $minuten -q $queue a.out $ROPTS
[1]	2806	fi
	2807
	2808	rm $runfile
	2809	else
[102]	2810	mpprun -n $numprocs a.out $ROPTS
[1]	2811	fi
	2812	[[ $? != 0 ]] && execution_error=true
	2813
	2814
	2815	# PERFORMANCE-AUSWERTUNG MIT APPRENTICE
	2816	if [[ "$cond1" = apprentice \|\| "$cond2" = apprentice ]]
	2817	then
	2818	apprentice
	2819	fi
	2820	else
[102]	2821	a.out $ROPTS
[1]	2822	fi
	2823	fi
	2824	if [[ $? != 0 \|\| $execution_error = true ]]
	2825	then
	2826
	2827	# ABBRUCH BEI LAUFZEITFEHLER
[102]	2828	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	2829	printf "\n +++ runtime error occured"
	2830	locat=execution
	2831	exit
	2832	else
[102]	2833	# [[ ! ( "$cond1" = debug \|\| "$cond2" = debug ) ]] && cat aout_output*
[1]	2834	printf "\n$striche\n *** execution finished \n"
	2835	fi
	2836
	2837
	2838
	2839	# EVENTUELLE OUTPUT-KOMMANDOS ABARBEITEN
	2840	(( i = 0 ))
	2841	while (( i < ioc ))
	2842	do
	2843	(( i = i + 1 ))
	2844	if (( i == 1 ))
	2845	then
	2846	printf "\n\n *** execution of OUTPUT-commands:\n$striche"
	2847	fi
	2848	printf "\n >>> ${out_command[$i]}"
	2849	eval ${out_command[$i]}
	2850	if (( i == ioc ))
	2851	then
	2852	printf "\n$striche\n"
	2853	fi
	2854	done
	2855
	2856
	2857	# EVTL. INHALT DES AKTUELLEN VERZEICHNISSES AUSGEBEN
	2858	if [[ $do_trace = true ]]
	2859	then
	2860	printf "\n\n"
	2861	ls -al
	2862	fi
	2863
	2864
	2865
	2866	# OUTPUT-DATEIEN AN IHRE ZIELORTE KOPIEREN
	2867	(( i = 0 ))
	2868	while (( i < iout ))
	2869	do
	2870	(( i = i + 1 ))
	2871	if (( i == 1 ))
	2872	then
	2873	printf "\n\n *** saving OUTPUT-files:\n$striche"
	2874	fi
	2875
	2876	# PRUEFEN, OB EINZELDATEI ODER DATEI PRO PROZESSOR
	2877	files_for_pes=false; filetyp=file
	2878	if [[ "${actionout[$i]}" = pe && -n $numprocs ]]
	2879	then
	2880	files_for_pes=true; filetyp=directory
	2881	actionout[$i]=""
	2882	elif [[ "${actionout[$i]}" = pe && ! -n $numprocs ]]
	2883	then
	2884	actionout[$i]=""
	2885	elif [[ "${actionout[$i]}" = arpe && -n $numprocs ]]
	2886	then
	2887	files_for_pes=true; filetyp=directory
	2888	actionout[$i]="ar"
	2889	elif [[ "${actionout[$i]}" = arpe && ! -n $numprocs ]]
	2890	then
	2891	actionout[$i]="ar"
	2892	elif [[ "${actionout[$i]}" = flpe && -n $numprocs ]]
	2893	then
	2894	files_for_pes=true; filetyp=directory
	2895	actionout[$i]="fl"
	2896	elif [[ "${actionout[$i]}" = flpe && ! -n $numprocs ]]
	2897	then
	2898	actionout[$i]="fl"
	2899	elif [[ "${actionout[$i]}" = trpe && -n $numprocs ]]
	2900	then
	2901	files_for_pes=true; filetyp=directory
	2902	actionout[$i]="tr"
	2903	elif [[ "${actionout[$i]}" = trpe && ! -n $numprocs ]]
	2904	then
	2905	actionout[$i]="tr"
	2906	fi
	2907
	2908	if [[ ! -f ${localout[$i]} && $files_for_pes = false ]]
	2909	then
	2910	printf "\n +++ temporary OUTPUT-file ${localout[$i]} does not exist\n"
	2911	elif [[ ! -f ${localout[$i]}/_0000 && $files_for_pes = true ]]
	2912	then
	2913	printf "\n +++ temporary OUTPUT-file ${localout[$i]}/.... does not exist\n"
	2914	else
	2915
	2916
	2917	# KOPIEREN PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	2918	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	2919	# REMOTE-RECHNUNGEN
	2920	if [[ "${actionout[$i]}" = tr ]]
	2921	then
	2922	if [[ $localhost != $fromhost ]]
	2923	then
	2924	if [[ $files_for_pes = false ]]
	2925	then
	2926	cps=""
	2927	cst=""
	2928	else
	2929	cps=-c
	2930	cst="/"
	2931	fi
	2932	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	2933	then
	2934
	2935	# TRANSFER IN EIGENSTAENDIGEM JOB
	2936	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	2937	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	2938	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	2939	if [[ $files_for_pes = false ]]
	2940	then
	2941	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	2942	else
	2943	mkdir $tmp_data_catalog/TRANSFER/$file_to_transfer
	2944	ln ${localout[$i]}/* $tmp_data_catalog/TRANSFER/$file_to_transfer
	2945	fi
	2946
	2947	echo "set -x" > transfer_${localout[$i]}
	2948	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	2949
	2950	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP in seperate job to"
	2951	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst"
	2952	printf "\n or higher cycle\n"
	2953	echo "batch_scp $cps -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	2954
[1]	2955	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	2956
	2957	if [[ $localhost = nech ]]
	2958	then
[82]	2959	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	2960	else
	2961	if [[ "$LOGNAME" = b323013 ]]
	2962	then
[82]	2963	subjob -v -q c1 -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	2964	else
[82]	2965	subjob -d -v -q c1 -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	2966	fi
	2967	fi
	2968
	2969	else
	2970
	2971	# TRANSFER INNERHALB DIESES JOBS
	2972	transfer_failed=false
[82]	2973	printf "\n >>> OUTPUT: ${localout[$i]}$cst by SCP to"
	2974	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}$cst\n"
	2975	batch_scp $cps -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	2976	[[ $? != 0 ]] && transfer_failed=true
[1]	2977
	2978	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	2979	# LOKALER MASCHINE ANLEGEN
	2980	if [[ $transfer_failed = true ]]
	2981	then
	2982	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	2983	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	2984
	2985	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	2986	# ANLEGEN.
	2987	eval local_catalog=${pathout[$i]}
	2988	if [[ ! -d $local_catalog ]]
	2989	then
	2990	printf " *** local directory does not exist. Trying to create:\n"
	2991	printf " $local_catalog \n"
	2992	mkdir -p $local_catalog
	2993	fi
	2994	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	2995	transfer_problems=true
	2996	fi
	2997	fi
	2998	else
	2999
	3000	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR KOPIERT WIRD
	3001	actionout[$i]=""
	3002	fi
	3003	fi
	3004
	3005
	3006	# APPEND PER FTP/SCP (IMMER IM BINAERMODUS, -M: FALLS ZIELKATALOG
	3007	# NICHT VORHANDEN, WIRD VERSUCHT, IHN ANZULEGEN), ABER NUR BEI
	3008	# REMOTE-RECHNUNGEN
	3009	if [[ "${actionout[$i]}" = tra ]]
	3010	then
	3011	if [[ $localhost != $fromhost ]]
	3012	then
	3013	if [[ $localhost = ibmh \|\| $localhost = ibmb \|\| $localhost = nech ]]
	3014	then
	3015
	3016	# TRANSFER IN EIGENSTAENDIGEM JOB
	3017	# ZUERST KOPIE DER DATEI INS TEMPORAERE DATENVERZEICHNIS
	3018	[[ ! -d $tmp_data_catalog/TRANSFER ]] && mkdir -p $tmp_data_catalog/TRANSFER
	3019	file_to_transfer=${fname}_${localout[$i]}_to_transfer_$kennung
	3020	ln -f ${localout[$i]} $tmp_data_catalog/TRANSFER/$file_to_transfer
	3021
	3022	echo "set -x" > transfer_${localout[$i]}
	3023	echo "cd $tmp_data_catalog/TRANSFER" >> transfer_${localout[$i]}
[82]	3024
	3025	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP in seperate job to"
	3026	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}"
	3027	printf "\n or higher cycle\n"
	3028	echo "batch_scp -A -b -m -u $return_username $return_addres $file_to_transfer \"${pathout[$i]}\" ${localhost}_${fname}${endout[$i]} ${extout[$i]}" >> transfer_${localout[$i]}
	3029
[1]	3030	echo "[[ \$? = 0 ]] && rm $file_to_transfer" >> transfer_${localout[$i]}
	3031
	3032	if [[ $localhost = nech ]]
	3033	then
[82]	3034	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3035	else
	3036	if [[ $LOGNAME = b323013 ]]
	3037	then
[82]	3038	subjob -v -q c1 -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3039	else
[82]	3040	subjob -d -v -q c1 -X 0 -m 1000 -t 900 transfer_${localout[$i]}
[1]	3041	fi
	3042	fi
	3043
	3044	else
	3045
	3046	# TRANSFER INNERHALB DIESES JOBS
	3047	transfer_failed=false
[82]	3048	printf "\n >>> OUTPUT: ${localout[$i]} append by SCP to"
	3049	printf "\n ${pathout[$i]}/${localhost}_${fname}${endout[$i]}\n"
	3050	batch_scp -A -b -m -u $return_username $return_addres ${localout[$i]} "${pathout[$i]}" ${localhost}_${fname}${endout[$i]} ${extout[$i]}
	3051	[[ $? != 0 ]] && transfer_failed=true
[1]	3052
	3053	# BEI FEHLGESCHLAGENEM TRANSFER SICHERUNGSKOPIE AUF
	3054	# LOKALER MASCHINE ANLEGEN
	3055	if [[ $transfer_failed = true ]]
	3056	then
	3057	printf " +++ transfer failed. Trying to save a copy on the local host under:\n"
	3058	printf " ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung\n"
	3059
	3060	# ERSTMAL PRUEFEN, OB VERZEICHNIS EXISTIERT. GEGEBENENFALLS
	3061	# ANLEGEN
	3062	eval local_catalog=${pathout[$i]}
	3063	if [[ ! -d $local_catalog ]]
	3064	then
	3065	printf " *** local directory does not exist. Trying to create:\n"
	3066	printf " $local_catalog \n"
	3067	mkdir -p $local_catalog
	3068	fi
	3069
	3070	eval cp ${localout[$i]} ${pathout[$i]}/${localhost}_${fname}${endout[$i]}_$kennung
	3071	transfer_problems=true
	3072	fi
	3073	fi
	3074	else
	3075
	3076	# WERTZUWEISUNG, SO DASS WEITER UNTEN NUR APPEND AUF
	3077	# LOKALER MASCHINE DURCHGEFUEHRT WIRD
	3078	actionout[$i]=a
	3079	fi
	3080	fi
	3081
	3082
	3083	# OUTPUT-DATEI FUER EINEN FORTSETZUNGSLAUF. DATEI WIRD PER
	3084	# LINK AUF DEN TEMPORAEREN DATENKATALOG GELEGT. OPTION -f WIRD
	3085	# VERWENDET, FALLS DORT NOCH EINE DATEI GLEICHEN NAMENS VORHANDEN
	3086	# SEIN SOLLTE. ANSCHLIESSEND WIRD SEINE ARCHIVIERUNG ANGESTOSSEN
	3087	if [[ "${actionout[$i]}" = fl ]]
	3088	then
	3089	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3090	chmod g+rx $tmp_data_catalog
	3091	if [[ $files_for_pes = false ]]
	3092	then
	3093	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3094	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3095	ln -f ${localout[$i]} $tmp_data_catalog/${frelout[$i]}
	3096	else
	3097	printf "\n >>> OUTPUT: ${localout[$i]}/.... to"
	3098	printf "\n $tmp_data_catalog/${frelout[$i]} (temporary data catalog)\n"
	3099	mkdir $tmp_data_catalog/${frelout[$i]}
	3100	ln -f ${localout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3101	fi
	3102
	3103
	3104	# ARCHIVIERUNGSJOB WIRD ERZEUGT UND ABGESCHICKT
	3105	if [[ $store_on_archive_system = true ]]
	3106	then
	3107
	3108	if [[ $archive_system = asterix ]]
	3109	then
	3110	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3111	if [[ $files_for_pes = false ]]
	3112	then
	3113	echo "stageout ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3114	else
	3115	echo "stageout -t ${frelout[$i]} > STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3116	fi
	3117	echo "cat STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3118	echo "if [[ \$(grep -c \"st.msg:150\" STAGE_OUTPUT${i}_$kennung) != 0 ]]" >> archive_${frelout[$i]}
	3119	echo "then" >> archive_${frelout[$i]}
	3120	echo " do_stageout=false" >> archive_${frelout[$i]}
	3121	echo "else" >> archive_${frelout[$i]}
	3122	echo " echo \" +++ $filetyp ${frelout[$i]} could not be stored on archive-system\" " >> archive_${frelout[$i]}
	3123	echo " cat /dev/null > ~/job_queue/ARCHIVE_ERROR_$fname" >> archive_${frelout[$i]}
	3124	echo " cat STAGE_OUTPUT${i}_$kennung > ~/job_queue/archive_${frelout[$i]}_error" >> archive_${frelout[$i]}
	3125	echo " echo \" *** $filetyp ${frelout[$i]} will be copied to \$WORK as backup\" " >> archive_${frelout[$i]}
	3126	if [[ $files_for_pes = false ]]
	3127	then
	3128	echo " cp ${frelout[$i]} \$WORK" >> archive_${frelout[$i]}
	3129	else
	3130	echo " cp -r ${frelout[$i]} \$WORK/${frelout[$i]}" >> archive_${frelout[$i]}
	3131	fi
	3132	echo " echo \" *** $filetyp ${frelout[$i]} saved\" " >> archive_${frelout[$i]}
	3133	echo "fi" >> archive_${frelout[$i]}
	3134	echo "rm STAGE_OUTPUT${i}_$kennung" >> archive_${frelout[$i]}
	3135	elif [[ $archive_system = DMF ]]
	3136	then
	3137	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3138	if [[ $files_for_pes = false ]]
	3139	then
	3140	printf "\n +++ archiving of single files impossible with $archive_system !\n"
	3141	locat=DMF
	3142	exit
	3143	else
	3144	# FUER RECHNER IN JUELICH. DORT KOENNTEN AUCH
	3145	# EINZELNE DATEIEN GESICHERT WERDEN (SPAETER KORR.)
	3146	echo "rm -rf \$ARCHIVE/${frelout[$i]}" >> archive_${frelout[$i]}
	3147	echo "cp -r ${frelout[$i]} \$ARCHIVE" >> archive_${frelout[$i]}
	3148	fi
	3149	elif [[ $archive_system = tivoli ]]
	3150	then
	3151	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3152	if [[ $files_for_pes = false ]]
	3153	then
	3154	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3155	echo "set -x" >> archive_${frelout[$i]}
	3156	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3157	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3158	else
	3159
	3160	echo "set -x" >> archive_${frelout[$i]}
	3161	echo "rm -rf \$PERM/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3162	echo "[[ ! -d \$PERM/${frelout[$i]} ]] && mkdir $PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3163	cd $tmp_data_catalog
	3164	all_files=`ls -1 ${frelout[$i]}/*`
	3165	cd - > /dev/null
	3166	(( inode = 0 ))
	3167	(( tp1 = tasks_per_node + 1 ))
	3168	while (( inode < nodes ))
	3169	do
	3170	# echo "*** all_files = \"$all_files\" "
	3171	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3172	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3173	# echo "*** tasks_per_node = \"$tasks_per_node\" "
	3174	# echo "*** files = \"$files\" "
	3175	# echo "*** all_files = \"$all_files\" "
	3176	echo "tar cvf \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3177	echo "dsmc incremental \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3178	echo "dsmmigrate \$PERM/${frelout[$i]}/${frelout[$i]}.node_$inode.tar" >> archive_${frelout[$i]}
	3179	(( inode = inode + 1 ))
	3180	done
	3181	# echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3182	# echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3183	fi
	3184	elif [[ $archive_system = ut ]]
	3185	then
	3186	echo "cd $tmp_data_catalog" >> archive_${frelout[$i]}
	3187	if [[ $files_for_pes = false ]]
	3188	then
	3189	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3190	echo "set -x" >> archive_${frelout[$i]}
	3191	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3192	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3193	else
	3194
	3195	echo "set -x" >> archive_${frelout[$i]}
	3196	echo "rm -rf \$UT/${frelout[$i]}/*" >> archive_${frelout[$i]}
	3197	echo "[[ ! -d \$UT/${frelout[$i]} ]] && mkdir $UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3198	cd $tmp_data_catalog
	3199	all_files=`ls -1 ${frelout[$i]}/*`
	3200	cd - > /dev/null
	3201	(( inode = 0 ))
	3202	(( tp1 = tasks_per_node + 1 ))
	3203	while (( inode < nodes ))
	3204	do
	3205	files=`echo $all_files \| cut -d" " -f1-$tasks_per_node`
	3206	all_files=`echo $all_files \| cut -d" " -f$tp1-`
	3207	echo "tar cvf \$UT/${frelout[$i]}/${frelout[$i]}.node_$inode.tar $files" >> archive_${frelout[$i]}
	3208	(( inode = inode + 1 ))
	3209	done
	3210	fi
	3211	elif [[ $archive_system = none ]]
	3212	then
	3213	printf " +++ archiving on $localhost not available!\n"
	3214	fi
	3215
	3216	if [[ $archive_system != none ]]
	3217	then
	3218	if [[ $localhost = ibmh \|\| $localhost = ibmb ]]
	3219	then
[97]	3220	# subjob -d -v -q cdata -X 0 -m 1000 -t 43200 archive_${frelout[$i]}
	3221	subjob -v -q cdata -X 0 -m 1000 -t 43200 archive_${frelout[$i]}
[1]	3222	elif [[ $localhost = nech ]]
	3223	then
[82]	3224	subjob -d -c /pf/b/$usern/job_queue -v -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3225	fi
	3226	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3227	fi
	3228	else
	3229	printf " +++ caution: option -A is switched on. No archiving on $archive_system!\n"
	3230	fi
	3231
	3232
	3233	# LEERDATEI IM BENUTZERVERZEICHNIS ANLEGEN, DAMIT BEKANNT IST,
	3234	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3235	if [[ $files_for_pes = false ]]
	3236	then
	3237	cat /dev/null > ${pathout[$i]}
	3238	else
	3239	mkdir -p ${pathout[$i]}
	3240	fi
	3241
	3242	fi
	3243
	3244
	3245	# KOPIEREN AUF LOKALER MASCHINE ZUM ARCHIV-SYSTEM
	3246	# AUSSERDEM MUSS LEERDATEI ANGELEGT WERDEN, DAMIT BEKANNT IST,
	3247	# WIE DIE HOECHSTE ZYKLUSNUMMER AUF DEM ARCHIV-SYSTEM LAUTET
	3248	# FALLS IRGENDEINE (VON MEHREREN) ARCHIVIERUNGEN SCHIEF GEHT,
	3249	# WIRD FLAG GESETZT UND BLEIBT AUCH BEI WEITEREN ORDNUNGS-
	3250	# GEMAESSEN ARCHIVIERUNGEN GESETZT
	3251	if [[ "${actionout[$i]}" = ar ]]
	3252	then
	3253	if [[ $files_for_pes = false ]]
	3254	then
	3255	printf "\n >>> OUTPUT: ${localout[$i]} to"
	3256	printf "\n ${pathout[$i]}"
	3257	printf "\n File will be copied to archive-system ($archive_system) !\n"
	3258	else
	3259	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to"
	3260	printf "\n ${pathout[$i]}"
	3261	printf "\n Directory will be copied to archive-system ($archive_system) !\n"
	3262	fi
	3263	mv ${localout[$i]} ${frelout[$i]}
	3264
	3265	file_saved=false
	3266
	3267	if [[ $archive_system = asterix ]]
	3268	then
	3269	do_stageout=true
	3270	(( stageout_anz = 0 ))
	3271	while [[ $do_stageout = true ]]
	3272	do
	3273	if [[ $files_for_pes = false ]]
	3274	then
	3275	stageout ${frelout[$i]} > STAGE_OUTPUT
	3276	else
	3277	stageout -t ${frelout[$i]} > STAGE_OUTPUT
	3278	fi
	3279	cat STAGE_OUTPUT
	3280	if [[ $(grep -c "st.msg:150" STAGE_OUTPUT) != 0 ]]
	3281	then
	3282	file_saved=true
	3283	do_stageout=false
	3284	else
	3285	if [[ $files_for_pes = false ]]
	3286	then
	3287	printf "\n +++ file ${frelout[$i]} could not be saved on archive-system"
	3288	else
	3289	printf "\n +++ directory ${frelout[$i]} could not be saved on archive-system"
	3290	fi
	3291	(( stageout_anz = stageout_anz + 1 ))
	3292	if (( stageout_anz == 10 ))
	3293	then
	3294	printf "\n +++ stoped after 10 unsuccessful tries!"
	3295	archive_save=false
	3296	do_stageout=false
	3297	else
	3298	printf "\n *** new try to store on archive after 15 min:"
	3299	sleep 900
	3300	fi
	3301	fi
	3302	done
	3303	elif [[ $archive_system = DMF ]]
	3304	then
	3305	if [[ $files_for_pes = false ]]
	3306	then
	3307	printf "\n +++ archiving of single files impossible on $archive_system!\n"
	3308	locat=DMF
	3309	exit
	3310	else
	3311	rm -rf $ARCHIVE/${frelout[$i]}
	3312	cp -r ${frelout[$i]} $ARCHIVE
	3313	fi
	3314	file_saved=true
	3315	elif [[ $archive_system = tivoli ]]
	3316	then
	3317	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3318	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3319	# GELEGT WERDEN
	3320	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3321	chmod g+rx $tmp_data_catalog
	3322	if [[ $files_for_pes = false ]]
	3323	then
	3324	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3325	else
	3326	mkdir $tmp_data_catalog/${frelout[$i]}
	3327	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3328	fi
	3329
	3330	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3331	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3332	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3333	if [[ $files_for_pes = false ]]
	3334	then
	3335	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3336	echo "rm -rf \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3337	echo "cp ${frelout[$i]} \$PERM/${frelout[$i]}" >> archive_${frelout[$i]}
	3338	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3339	else
	3340	echo "rm -rf \$PERM/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3341	echo "tar cvf \$PERM/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3342	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3343	fi
	3344
[97]	3345	subjob -v -d -q cdata -X 0 -m 1000 -t 43200 archive_${frelout[$i]}
[1]	3346	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3347	file_saved=true
	3348
	3349	elif [[ $archive_system = ut ]]
	3350	then
	3351	# ARCHIVIERUNG NUR PER BATCH-JOB MOEGLICH
	3352	# DATEI MUSS ZWISCHENZEITLICH INS TEMPORAERE DATENVERZEICHNIS
	3353	# GELEGT WERDEN
	3354	[[ ! -d $tmp_data_catalog ]] && mkdir -p $tmp_data_catalog
	3355	chmod g+rx $tmp_data_catalog
	3356	if [[ $files_for_pes = false ]]
	3357	then
	3358	ln -f ${frelout[$i]} $tmp_data_catalog/${frelout[$i]}
	3359	else
	3360	mkdir $tmp_data_catalog/${frelout[$i]}
	3361	ln -f ${frelout[$i]}/* $tmp_data_catalog/${frelout[$i]}
	3362	fi
	3363
	3364	# BATCH JOB GENERIEREN UND ABSCHICKEN; DATEI MUSS WIEDER
	3365	# AUS TEMPORAEREM DATENVERZEICHNIS ENTFERNT WERDEN
	3366	echo "cd $tmp_data_catalog" > archive_${frelout[$i]}
	3367	if [[ $files_for_pes = false ]]
	3368	then
	3369	# EVENTUELL NOCH VORHANDENE DATEI IM ARCHIV LOSCHEN
	3370	echo "rm -rf \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3371	echo "cp ${frelout[$i]} \$UT/${frelout[$i]}" >> archive_${frelout[$i]}
	3372	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3373	else
	3374	echo "rm -rf \$UT/${frelout[$i]}.tar" >> archive_${frelout[$i]}
	3375	echo "tar cvf \$UT/${frelout[$i]}.tar ${frelout[$i]}" >> archive_${frelout[$i]}
	3376	echo "rm -rf ${frelout[$i]}" >> archive_${frelout[$i]}
	3377	fi
	3378
[82]	3379	subjob -v -c /pf/b/$usern/job_queue -d -q pp -X 0 -m 1000 -t 7200 archive_${frelout[$i]}
[1]	3380	printf " Archiving of $tmp_data_catalog/${frelout[$i]} initiated (batch job submitted)\n"
	3381	file_saved=true
	3382
	3383	else
	3384	printf "\n +++ archive_system=\"$archive_system\" archiving impossible!"
	3385	archive_save=false
	3386	fi
	3387	if [[ $file_saved = true ]]
	3388	then
	3389	if [[ $files_for_pes = false ]]
	3390	then
	3391	cat /dev/null > ${pathout[$i]}
	3392	else
	3393	mkdir -p ${pathout[$i]}
	3394	fi
	3395	fi
	3396	fi
	3397
	3398	# APPEND AUF LOKALER MASCHINE
	3399	if [[ "${actionout[$i]}" = "a" ]]
	3400	then
	3401	printf "\n >>> OUTPUT: ${localout[$i]} append to ${pathout[$i]}\n"
	3402	cat ${localout[$i]} >> ${pathout[$i]}
	3403	fi
	3404
	3405	# KOPIEREN AUF LOKALER MASCHINE
	3406	# ES MUSS KOPIERT WERDEN, DA MOVE NICHT UEBER FILESYSTEM HINAUS MOEGLICH
	3407	if [[ "${actionout[$i]}" = "" && $files_for_pes = false ]]
	3408	then
	3409
	3410	# KOPIEREN AUF EINPROZESSORMASCHINE
[5]	3411	if [[ "${extout[$i]}" != " " && "${extout[$i]}" != "" ]]
[1]	3412	then
	3413	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}.${extout[$i]}\n"
	3414	cp ${localout[$i]} ${pathout[$i]}.${extout[$i]}
	3415	else
	3416	printf "\n >>> OUTPUT: ${localout[$i]} to ${pathout[$i]}\n"
	3417	cp ${localout[$i]} ${pathout[$i]}
	3418	fi
	3419
	3420	elif [[ "${actionout[$i]}" = "" && $files_for_pes = true ]]
	3421	then
	3422
	3423	# DIE DEN PROZESSOREN EINES PARALLELRECHNERS ZUGEHOERIGEN
	3424	# DATEIEN WERDEN ERST IN EINEM KATALOG GESAMMELT UND DIESER
	3425	# WIRD DANN KOPIERT
	3426	# PER MOVE UMBENANNT WERDEN
	3427	printf "\n >>> OUTPUT: ${localout[$i]}/_.... to ${pathout[$i]}\n"
	3428	cp -r ${localout[$i]} ${pathout[$i]}
	3429
	3430	fi
	3431	fi
	3432	done
	3433	if (( i != 0 ))
	3434	then
	3435	if [[ $transfer_problems = true ]]
	3436	then
	3437	printf "\n$striche\n *** OUTPUT-files saved"
	3438	printf "\n +++ WARNING: some data transfers failed! \n"
	3439	else
	3440	printf "\n$striche\n *** all OUTPUT-files saved \n"
	3441	fi
	3442	fi
	3443
	3444
	3445	# EVENTUELL FOLGEJOB STARTEN
	3446	# DATEI CONTINUE_RUN MUSS VOM BENUTZERPROGRAMM AUS ERZEUGT WERDEN
	3447	if [[ -f CONTINUE_RUN ]]
	3448	then
	3449
	3450	if [[ $archive_save = true ]]
	3451	then
	3452
	3453	# ZUERST IN MRUN-AUFRUF OPTIONEN FUER FORTSETZUNGSLAUF, FUER
	3454	# STILLES ABARBEITEN (OHNE INTERAKTIVE RUECKFAGEN) UND FUER
	3455	# BATCH-BETRIEB (NUR WICHTIG, FALLS BATCH AUF LOKALER MASCHINE
	3456	# DURCHGEFUEHRT WERDEN SOLL) EINFUEGEN, FALLS NICHT BEREITS VOR-
	3457	# HANDEN
	3458	[[ $(echo $mc \| grep -c "\-C") = 0 ]] && mc="$mc -C"
	3459	[[ $(echo $mc \| grep -c "\-v") = 0 ]] && mc="$mc -v"
	3460	[[ $(echo $mc \| grep -c "\-b") = 0 ]] && mc="$mc -b"
	3461	if [[ $(echo $mc \| grep -c "#") != 0 ]]
	3462	then
	3463	mc=`echo $mc \| sed 's/#/f/g'`
	3464	fi
	3465
	3466
	3467	# JOB STARTEN
	3468	printf "\n\n *** initiating restart-run on \"$return_addres\" using command:\n"
	3469	echo " $mc"
	3470	printf "\n$striche\n"
	3471	if [[ $localhost != $fromhost ]]
	3472	then
	3473
	3474	if [[ $localhost = nech \|\| $localhost = ibmb \|\| $localhost = ibmh \|\| $localhost = ibms \|\| $localhost = lctit ]]
	3475	then
	3476	echo "*** ssh will be used to initiate restart-runs!"
	3477	echo " return_addres=\"$return_addres\" "
	3478	echo " return_username=\"$return_username\" "
	3479	if [[ $return_addres = 172.20.25.41 ]]
	3480	then
	3481	# WORKAROUND AUF SCIROCCO AM TIT
[33]	3482	print "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc " \| ssh $return_addres -l $return_username
[1]	3483	else
[33]	3484	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
[1]	3485	fi
	3486	else
	3487	printf "\n +++ no restart mechanism available for host \"$localhost\" "
	3488	locat=restart; exit
	3489	fi
	3490
	3491	# WARTEN, DAMIT SICH RESTART JOB IN QUEUE EINREIHEN KANN, BEVOR
	3492	# DER AKTUELLE JOB ENDET
	3493	sleep 30
	3494
	3495	else
	3496
	3497	# BEI RECHNUNGEN AUF LOKALER MASCHINE KANN MRUN DIREKT AUFGE-
[108]	3498	# RUFEN WERDEN, AUSSER AUF lcfimm
[1]	3499	cd $LOCAL_PWD
[108]	3500	if [[ $localhost = lcfimm ]]
	3501	then
	3502	ssh $return_addres -l $return_username "PATH=\$PATH:$LOCAL_MRUN_PATH;export PALM_BIN=$LOCAL_MRUN_PATH;cd $LOCAL_PWD; $mc "
	3503	else
	3504	eval $mc # ' MUESSEN AUSGEWERTET WERDEN
	3505	fi
[1]	3506	cd - > /dev/null
	3507	fi
	3508	printf "\n$striche\n *** restart-run initiated \n"
	3509
	3510
	3511	# EVENTUELL INPUT-DATEIEN, DIE VON TEMPORAEREM DATENVERZEICHNIS
	3512	# GEHOLT WORDEN SIND, LOESCHEN
	3513	(( i = 0 ))
	3514	while (( i < iin ))
	3515	do
	3516	(( i = i + 1 ))
	3517	if [[ "${got_tmp[$i]}" = true && $keep_data_from_previous_run = false ]]
	3518	then
	3519	rm -r $tmp_data_catalog/${frelin[$i]}
	3520	fi
	3521	done
	3522
	3523	else
	3524
	3525	printf "\n +++ no restart-run possible, since errors occured"
	3526	printf "\n during the archive process"
	3527	fi
	3528
	3529	fi
	3530
	3531
	3532
	3533	# EVTL. EMAIL-BENACHRICHTIGUNG UEBER ABGESCHLOSSENEN LAUF
	3534	if [[ "$email_notification" != "" ]]
	3535	then
	3536
	3537	if [[ $localhost != $fromhost ]]
	3538	then
	3539	if [[ -f CONTINUE_RUN ]]
	3540	then
	3541	echo "PALM restart run necessary" > email_text
	3542	echo "description header of actual run:" >> email_text
	3543	cat CONTINUE_RUN >> email_text
	3544	echo "mrun-command to restart:" >> email_text
	3545	echo "$mc" >> email_text
	3546	else
	3547	echo "PALM run with base filename \"$fname\" on host \"$localhost\" finished" > email_text
	3548	fi
	3549	mail $email_notification < email_text
	3550	printf "\n *** email notification sent to \"$email_notification\" "
	3551	fi
	3552	fi
	3553
	3554
	3555
	3556	# ALLE ARBEITEN BEENDET. TEMPORAERER KATALOG KANN GELOESCHT WERDEN
	3557	cd $HOME
	3558	[[ $delete_temporary_catalog = true ]] && rm -rf $TEMPDIR
	3559
	3560	else
	3561
	3562
	3563	# FALLS AUF REMOTE-MASCHINE GERECHNET WERDEN SOLL, WERDEN JETZT ENTSPRE-
	3564	# CHENDE AKTIONEN DURCHGEFUEHRT
	3565
	3566	# MRUN-BEFEHL FUER REMOTE-MASCHINE ZUSAMMENSTELLEN
[82]	3567	mrun_com="$mrun_script_name -a $afname -c $config_file -d $fname -h $host -H $fromhost -m $memory -t $cpumax -q $queue -R $return_addres -U $return_username -u $remote_username"
[1]	3568	[[ "$cpp_opts" != "" ]] && mrun_com=${mrun_com}" -D \"$cpp_opts\""
[79]	3569	[[ "$global_revision" != "" ]] && mrun_com=${mrun_com}" -G \"$global_revision\""
[123]	3570	[[ $group_number != none ]] && mrun_com=${mrun_com}" -g $group_number"
[1]	3571	[[ $do_compile = true ]] && mrun_com=${mrun_com}" -s \"$source_list\""
	3572	[[ "$input_list" != "" ]] && mrun_com=${mrun_com}" -i \"$input_list\""
	3573	[[ $ignore_archive_error = true ]] && mrun_com=${mrun_com}" -I"
	3574	[[ $keep_data_from_previous_run = true ]] && mrun_com=${mrun_com}" -k"
	3575	[[ "$additional_conditions" != "" ]] && mrun_com=${mrun_com}" -K \"$additional_conditions\""
	3576	# [[ "$makefile" != "$source_path/Makefile" ]] && mrun_com=${mrun_com}" -M \"$makefile\""
	3577	[[ "$output_list" != "" ]] && mrun_com=${mrun_com}" -o \"$output_list\""
	3578	[[ "$read_from_config" = false ]] && mrun_com=${mrun_com}" -S"
	3579	[[ $do_trace = true ]] && mrun_com=${mrun_com}" -x"
	3580	[[ "$numprocs" != "" ]] && mrun_com=${mrun_com}" -X $numprocs"
	3581	if [[ $use_openmp = true ]]
	3582	then
	3583	mrun_com=${mrun_com}" -O"
	3584	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $threads_per_task"
	3585	else
	3586	[[ "$tasks_per_node" != "" ]] && mrun_com=${mrun_com}" -T $tasks_per_node"
	3587	fi
	3588	[[ $store_on_archive_system = false ]] && mrun_com=${mrun_com}" -A"
	3589	[[ $package_list != "" ]] && mrun_com=${mrun_com}" -p \"$package_list\""
	3590	[[ $return_password != "" ]] && mrun_com=${mrun_com}" -P $return_password"
	3591	[[ $delete_temporary_catalog = false ]] && mrun_com=${mrun_com}" -B"
[127]	3592	[[ $node_usage != default && "$(echo $node_usage \| cut -c1-3)" != "sla" && $node_usage != novice ]] && mrun_com=${mrun_com}" -n $node_usage"
[102]	3593	[[ $run_coupled_model = true ]] && mrun_com=${mrun_com}" -Y"
[1]	3594	if [[ $do_remote = true ]]
	3595	then
	3596	printf "\n>>>> MRUN-command on execution host:\n>>>> $mrun_com \n"
	3597	fi
	3598
	3599
	3600	# ZUSAMMENSTELLUNG DES JOBSCRIPTS AUF DATEI jobfile
	3601	jobfile=jobfile.$RANDOM
	3602
	3603
	3604	# TEMPORAERES VERZEICHNIS GENERIEREN UND NACH DORT WECHSELN
	3605	echo "mkdir $TEMPDIR" >> $jobfile
	3606	echo "cd $TEMPDIR" >> $jobfile
	3607
	3608
	3609	# EVENTUELL FEHLERVERFOLGUNG AKTIVIEREN
	3610	if [[ $do_trace = true ]]
	3611	then
	3612	echo "set -x" >> $jobfile
	3613	else
	3614	echo "set +vx" >> $jobfile
	3615	fi
	3616
	3617
	3618	# ABSPEICHERN DER QUELLTEXTE (NUR FALLS UEBERSETZT WERDEN SOLL)
	3619	# SOWIE GEGEBENENFALLS DES MAKEFILES
	3620	if [[ $do_compile = true ]]
	3621	then
	3622
	3623	source_catalog=SOURCES_FOR_RUN_$fname
	3624
	3625	# UNTERVERZEICHNIS FUER QUELLTEXTE UND MAKEFILE ANLEGEN
	3626	# MRUN WIRD DIESES VRZEICHNIS UEBER ENVIRONMENT VARIABLE
	3627	# MITGETEILT (UEBERSTEUERT ANGABE IN KONFIGURATIONSDATEI)
	3628	echo "mkdir SOURCES_FOR_RUN_$fname" >> $jobfile
	3629	echo "export SOURCES_COMPLETE=true" >> $jobfile
	3630	echo "cd SOURCES_FOR_RUN_$fname" >> $jobfile
	3631
	3632	for filename in $source_list
	3633	do
	3634	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	3635	echo "cat > $filename << \"%END%\"" >> $jobfile
	3636	cat $source_catalog/$filename >> $jobfile
	3637	echo " " >> $jobfile
	3638	echo "%END%" >> $jobfile
	3639	echo " " >> $jobfile
	3640	done
	3641
[82]	3642	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	3643	echo "cat > Makefile << \"%END%\"" >> $jobfile
	3644	cat $source_catalog/Makefile >> $jobfile
	3645	echo " " >> $jobfile
	3646	echo "%END%" >> $jobfile
	3647	echo " " >> $jobfile
[1]	3648
	3649	echo "cd - > /dev/null" >> $jobfile
	3650
	3651	fi
	3652
	3653
	3654	# ABSPEICHERN DER KONFIGURATIONSDATEI
	3655	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	3656	echo "cat > $config_file << \"%END%\"" >> $jobfile
	3657	cat $config_file >> $jobfile
	3658	echo "%END%" >> $jobfile
	3659	echo " " >> $jobfile
	3660
	3661
	3662	# ABSPEICHERN DER AKTUELLEN MRUN-VERSION
	3663	# ABDECKZEICHEN VERHINDERN, DASS ERSETZUNGEN ERFOLGEN
	3664	echo "cat > $mrun_script_name <<\"%END%\"" >> $jobfile
[22]	3665	cat ${PALM_BIN}/$mrun_script_name >> $jobfile
[1]	3666	echo "%END%" >> $jobfile
	3667	if [[ $host = lctit ]]
	3668	then
	3669	echo "sed 's/bin\/ksh/home2\/usr5\/mkanda\/pub\/ksh/' < $mrun_script_name > mrun_new" >> $jobfile
	3670	echo "mv mrun_new $mrun_script_name" >> $jobfile
	3671	fi
	3672	echo "chmod u+x $mrun_script_name" >> $jobfile
	3673	echo "execute_mrun=true" >> $jobfile
	3674	echo " " >> $jobfile
	3675
	3676	# EVTL. BENOETIGTE INPUT-DATEIEN PER FTP HOLEN ODER DEM JOB DIREKT
	3677	# MITGEBEN UND AUF DEM REMOTE-RECHNER IM BENUTZERVERZEICHNIS ABLEGEN
	3678	# FALLS DIESES NICHT EXISTIERT, WIRD VERSUCHT, DAS JEWEILS LETZTE
	3679	# UNTERVERZEICHNIS DES PFADNAMENS ANZULEGEN
	3680	if [[ $do_remote = true ]]
	3681	then
	3682	(( i = 0 ))
	3683	while (( i < iin ))
	3684	do
	3685	(( i = i + 1 ))
	3686	echo "[[ ! -d ${pathin[$i]} ]] && mkdir -p ${pathin[$i]}" >> $jobfile
	3687	if [[ "${transin[$i]}" = job ]]
	3688	then
	3689	echo "cat > ${remotepathin[$i]} <<\"%END%\"" >> $jobfile
	3690	eval cat ${pathin[$i]}/${frelin[$i]} >> $jobfile
	3691	echo " " >> $jobfile
	3692	echo "%END%" >> $jobfile
	3693	else
[82]	3694	echo "batch_scp -b -o -g -s -u $return_username $return_addres ${remotepathin[$i]} \"${pathin[$i]}\" ${frelin[$i]}" >> $jobfile
[1]	3695	fi
	3696
	3697	# UEBERPRUEFEN, OB DATEI ANGELEGT WERDEN KONNTE
	3698	echo "if [[ \$? = 1 ]]" >> $jobfile
	3699	echo "then" >> $jobfile
	3700	echo " echo \" \" " >> $jobfile
	3701	echo " echo \"+++ file ${remotepathin[$i]} could not be created\" " >> $jobfile
	3702	echo " echo \" please check, if directory exists on $host!\" " >> $jobfile
	3703	echo " echo \"+++ MRUN will not be continued\" " >> $jobfile
	3704	echo " execute_mrun=false" >> $jobfile
	3705	echo "fi" >> $jobfile
	3706	done
	3707	fi
	3708
	3709	# ARBEITSKATALOG AUF DER LOKALEN MASCHINE FUER EVENTUELLE
	3710	# FORTSETZUNGSLAUEFE PER ENV-VARIABLE UEBERGEBEN
	3711	echo "LOCAL_PWD=$working_directory" >> $jobfile
	3712	echo "export LOCAL_PWD" >> $jobfile
	3713
	3714	# EBENSO LOKALEN MRUN-KATALOG UEBERGEBEN
[22]	3715	echo "LOCAL_MRUN_PATH=$PALM_BIN" >> $jobfile
[1]	3716	echo "export LOCAL_MRUN_PATH" >> $jobfile
	3717
[66]	3718	# WORKAROUND FUER RIAM-NEC-JOBS WEGEN PROFILE-SCHWIERIGKEITEN
[69]	3719	if [[ $localhost_realname = "gate" \|\| $localhost = lctit ]]
[66]	3720	then
	3721	echo "export PALM_BIN=$PALM_BIN" >> $jobfile
	3722	fi
[1]	3723
	3724	# MRUN AUF ZIELRECHNER AUFRUFEN
	3725	echo "set -x" >> $jobfile
	3726	echo "[[ \$execute_mrun = true ]] && ./$mrun_com" >> $jobfile
	3727
	3728	echo 'ls -al; echo `pwd`' >> $jobfile
	3729	echo "cd \$HOME" >> $jobfile
	3730	echo "rm -rf $TEMPDIR" >> $jobfile
	3731
	3732
	3733
	3734
	3735	# JOB PER SUBJOB STARTEN
	3736	if [[ $silent = false ]]
	3737	then
	3738	printf "\n "
	3739	else
	3740	printf "\n\n"
	3741	fi
	3742
[122]	3743	subjob $job_on_file -h $host -u $remote_username -g $group_number -q $queue -m $memory -N $node_usage -t $cpumax $XOPT $TOPT $OOPT -n $fname -v $jobfile
[1]	3744	rm -rf $jobfile
	3745
	3746
	3747	fi # ENDE REMOTE-TEIL
	3748
	3749
	3750
	3751	# ENDE DER PROZEDUR

Note: See TracBrowser for help on using the repository browser.

Context Navigation

source: palm/trunk/SCRIPTS/mrun @ 134

Download in other formats: