source: palm/trunk/SCRIPTS/.palm.config.idefix @ 4814

Last change on this file since 4814 was 4814, checked in by gronemeier, 10 months ago

add additional output paths to palm.iofiles and update configuration files accordingly

  • Property svn:keywords set to Id
File size: 3.9 KB
Line 
1#$Id: .palm.config.idefix 4814 2020-12-09 13:08:08Z gronemeier $
2#This configuration file is for running jobs locally (interactive or batch mode)
3#on host idefix.
4#-------------------------------------------------------------------------------
5#column 1          column 2
6#name of variable  value of variable (~ must not be used)
7#-------------------------------------------------------------------------------
8%base_directory      $HOME/palm/current_version
9%base_data           ~/palm/current_version/JOBS
10%source_path         $HOME/palm/current_version/trunk/SOURCE
11%user_source_path    $base_directory/JOBS/$run_identifier/USER_CODE
12%fast_io_catalog     /work/<replace_by_your_IDEFIX_username>
13%restart_data_path    $fast_io_catalog
14%output_data_path    /work/<replace_by_your_IDEFIX_username>/JOBS/
15%local_jobcatalog    $base_data/$run_identifier/LOG_FILES
16%remote_jobcatalog   $base_data/$run_identifier/LOG_FILES
17
18%local_ip            130.75.105.239
19%local_username      <replace_by_your_IDEFIX_username>
20%defaultqueue        workq
21%submit_command      /opt/pbspro/default/bin/qsub
22
23%compiler_name       mpif90
24%compiler_name_ser   ifort
25%cpp_options         -cpp -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -D__intel_compiler
26%make_options        -j 4
27%compiler_options    -fpe0 -O3 -cpp -fp-model source -ftz -no-prec-div -no-prec-sqrt -ip -I /opt/netcdf4_hdf5parallel/4411c_443f/intel/include -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib -L/opt/hdf5-parallel/1.10.0-patch1/intel/lib -lnetcdf -lnetcdff -I /opt/fftw/3.3.6-pl1/mvapich2-intel/include -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib -lfftw3
28%linker_options      -fpe0 -O3 -cpp -fp-model source -ftz -no-prec-div -no-prec-sqrt -ip -I /opt/netcdf4_hdf5parallel/4411c_443f/intel/include -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib -L/opt/hdf5-parallel/1.10.0-patch1/intel/lib -lnetcdf -lnetcdff -I /opt/fftw/3.3.6-pl1/mvapich2-intel/include -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib -lfftw3
29%hostfile            auto
30%module_commands     module load intel-compiler/2017.1.132 mvapich2/2.2/intel fftw/3.3.6-pl1/mvapich2-intel hdf5-parallel/1.10.0-patch1/intel netcdf4_hdf5parallel/4411c_443f/intel
31%execute_command     mpirun  -machinefile hostfile  -n {{mpi_tasks}} palm
32
33# BATCH-directives to be used for batch jobs.
34BD:#!/bin/bash
35BD:#PBS -N{{run_id}}
36BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
37BD:#PBS -l ncpus={{cores}}
38BD:#PBS -o{{job_protocol_file}}
39BD:#PBS -j oe
40BD:#PBS -q{{queue}}
41
42# BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
43BDT:#!/bin/bash
44BDT:#PBS -N job_protocol_transfer
45BDT:#PBS -l walltime=00:30:00
46BDT:#PBS -l ncpus=1
47BDT:#PBS -o{{job_transfer_protocol_file}}
48BDT:#PBS -j oe
49BDT:#PBS -q workq
50
51#----------------------------------------------------------------------------
52# INPUT-commands, executed before running PALM - lines must start with "IC:"
53#----------------------------------------------------------------------------
54IC:export MV2_ENABLE_AFFINITY=0
55IC:export MV2_SHOW_CPU_BINDING=1
56IC:export MV2_CPU_BINDING_POLICY=scatter
57IC:ulimit -s unlimited
58
59#----------------------------------------------------------------------------
60# ERROR-commands - executed when program terminates abnormally
61#----------------------------------------------------------------------------
62EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
63EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
64
65#----------------------------------------------------------------------------
66# OUTPUT-commands - executed when program terminates normally
67#----------------------------------------------------------------------------
68# Combine 1D- and 3D-profile output (these files are not usable for plotting)
69OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
70OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
71
72# Combine all particle information files
73OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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