source: palm/trunk/SCRIPTS/.palm.config.idefix @ 2968

Last change on this file since 2968 was 2834, checked in by raasch, 4 years ago

fname renamed jobname

  • Property svn:keywords set to Id
File size: 4.0 KB
Line 
1#$Id: .palm.config.idefix 2834 2018-02-23 14:04:07Z suehring $
2#This configuration file is for running jobs locally (interactive or batch mode)
3#on host idefix.
4#-------------------------------------------------------------------------------
5#column 1          column 2
6#name of variable  value of variable (~ must not be used)
7#-------------------------------------------------------------------------------
8%base_data          ~/palm/current_version/JOBS
9%base_directory     $HOME/palm/current_version
10%fast_io_catalog    /work/<replace_by_your_IDEFIX_username>
11%local_jobcatalog   $HOME/job_queue
12%output_path        /work/<replace_by_your_IDEFIX_username>/JOBS/$jobname
13%remote_jobcatalog  $HOME/job_queue
14%source_path        $HOME/palm/current_version/trunk/SOURCE
15%user_source_path   $base_directory/JOBS/$jobname/USER_CODE
16#
17%local_ip            130.75.105.239
18%local_username      <replace_by_your_IDEFIX_username>
19%defaultqueue        workq
20%submit_command      /opt/pbspro/default/bin/qsub
21#
22%compiler_name       mpif90
23%compiler_name_ser   ifort
24%cpp_options         -cpp -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -D__intel_compiler
25%make_options        -j 4
26%compiler_options    -fpe0 -O3 -cpp -fp-model source -ftz -fno-alias -no-prec-div -no-prec-sqrt -ip -nbs -diag-disable 8290,8291 -I /opt/netcdf4_hdf5parallel/4411c_443f/intel/include -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib -L/opt/hdf5-parallel/1.10.0-patch1/intel/lib -lnetcdf -lnetcdff -I /opt/fftw/3.3.6-pl1/mvapich2-intel/include -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib -lfftw3
27%linker_options      -fpe0 -O3 -cpp -fp-model source -ftz -fno-alias -no-prec-div -no-prec-sqrt -ip -nbs -diag-disable 8290,829 -I /opt/netcdf4_hdf5parallel/4411c_443f/intel/include -L/opt/netcdf4_hdf5parallel/4411c_443f/intel/lib -L/opt/hdf5-parallel/1.10.0-patch1/intel/lib -lnetcdf -lnetcdff -I /opt/fftw/3.3.6-pl1/mvapich2-intel/include -L/opt/fftw/3.3.6-pl1/mvapich2-intel/lib -lfftw3
28%hostfile            auto
29%module_commands     module load intel-compiler/2017.1.132 mvapich2/2.2/intel fftw/3.3.6-pl1/mvapich2-intel hdf5-parallel/1.10.0-patch1/intel netcdf4_hdf5parallel/4411c_443f/intel
30#
31%execute_command     mpirun  -machinefile hostfile  -n {{mpi_tasks}} palm
32#
33#
34# BATCH-directives to be used for batch jobs.
35BD:#!/bin/bash
36BD:#PBS -N{{job_id}}
37BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
38BD:#PBS -l ncpus={{cores}}
39BD:#PBS -o{{job_protocol_file}}
40BD:#PBS -j oe
41BD:#PBS -q{{queue}}
42#
43# BATCH-directives for batch jobs used to send back the jobfile from a remote to a local host
44BDT:#!/bin/bash
45BDT:#PBS -N job_protocol_transfer
46BDT:#PBS -l walltime=00:30:00
47BDT:#PBS -l ncpus=1
48BDT:#PBS -o{{job_transfer_protocol_file}}
49BDT:#PBS -j oe
50BDT:#PBS -q workq
51#
52#
53#----------------------------------------------------------------------------
54# INPUT-commands, executed before running PALM - lines must start with "IC:"
55#----------------------------------------------------------------------------
56IC:export MV2_ENABLE_AFFINITY=0
57IC:export MV2_SHOW_CPU_BINDING=1
58IC:export MV2_CPU_BINDING_POLICY=scatter
59IC:ulimit -s unlimited
60#
61#----------------------------------------------------------------------------
62# ERROR-commands - executed when program terminates abnormally
63#----------------------------------------------------------------------------
64EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
65EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
66#
67#----------------------------------------------------------------------------
68# OUTPUT-commands - executed when program terminates normally
69#----------------------------------------------------------------------------
70#
71# Combine 1D- and 3D-profile output (these files are not usable for plotting)
72OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
73OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
74#
75# Combine all particle information files
76OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
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