#$Id: .palm.config.aurora 4370 2020-01-10 14:00:44Z moh.hefny $
#column 1          column 2
#name of variable  value of variable (~ must not be used)
#----------------------------------------------------------------------------
%base_data         ~/palm/current_version/JOBS
%base_directory    $HOME/palm/current_version
%fast_io_catalog   /scratch/<replace by LUIS username>
%source_path       $HOME/palm/current_version/trunk/SOURCE
%user_source_path  $base_directory/JOBS/$run_identifier/USER_CODE
%local_jobcatalog  $HOME/job_queue
#
%local_ip            130.75.7.130
%local_username      <replace by LUIS username>
%compiler_name       mpinfort
%compiler_name_ser   mpinfort
%cpp_options         -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION
%make_options        -j 4
%compiler_options    -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include
%linker_options      -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi
#%hostfile            auto
%defaultqueue        all
%submit_command      /usr/bin/qsub
%memory              2000
%login_init_cmd      source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh
%execute_command     mpirun -v -ve 0-3  -np {{mpi_tasks}}  ./palm
#
#----------------------------------------------------------------------------
# INPUT-commands, executed before running PALM - lines must start with "IC:" 
#----------------------------------------------------------------------------
#IC:ulimit -s unlimited
#
#----------------------------------------------------------------------------
# ERROR-commands - executed when program terminates abnormally
#----------------------------------------------------------------------------
EC:[[ \$locat = execution ]]  &&  cat  RUN_CONTROL
EC:[[ \$locat = execution ]]  &&  cat  PARTICLE_INFOS/*
#
#----------------------------------------------------------------------------
# OUTPUT-commands - executed when program terminates normally
#----------------------------------------------------------------------------
#
# Combine 1D- and 3D-profile output (these files are not usable for plotting)
OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
#
# Combine all particle information files
OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO
#
# BATCH-directives to be used for batch jobs.
# ATTENTION: The batch following batch directives still need to be adjusted for the
#            NEC Aurora system!!!!!!!!!!!!!!
BD:#!/bin/bash
BD:#PBS -N {{run_id}}
BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
BD:#PBS -l ncpus={{cores}}
BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
BD:#PBS -l mem={{memory}}mb
BD:#PBS -W x=PARTITION:lena
BD:#PBS -o {{job_protocol_file}}
BD:#PBS -j oe
BD:#PBS -q {{queue}}