#$Id: .palm.config.aurora 4370 2020-01-10 14:00:44Z moh.hefny $ #column 1 column 2 #name of variable value of variable (~ must not be used) #---------------------------------------------------------------------------- %base_data ~/palm/current_version/JOBS %base_directory $HOME/palm/current_version %fast_io_catalog /scratch/ %source_path $HOME/palm/current_version/trunk/SOURCE %user_source_path $base_directory/JOBS/$run_identifier/USER_CODE %local_jobcatalog $HOME/job_queue # %local_ip 130.75.7.130 %local_username %compiler_name mpinfort %compiler_name_ser mpinfort %cpp_options -fpp -D__parallel -D__nec -D__netcdf -D__netcdf4 -D__netcdf4_parallel -D__fftw -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION %make_options -j 4 %compiler_options -O3 -traceback -finline-functions -g -report-all -Werror -I /home/nhbkklau/opt/NetCDF_parallel_nec/include -I /home/nhbkklau/opt/fftw3_nec/include %linker_options -L/home/nhbkklau/opt/NetCDF_parallel_nec/lib -lnetcdff -lnetcdf -Wl,-rpath=/home/nhbkklau/opt/NetCDF_parallel_nec/lib -L/home/nhbkklau/opt/hdf5_parallel_nec/lib -lhdf5 -lhdf5_hl -Wl,-rpath=/home/nhbkklau/opt/hdf5_parallel_nec/lib -L/home/nhbkklau/opt/fftw3_nec/lib -lfftw3 -lmpi #%hostfile auto %defaultqueue all %submit_command /usr/bin/qsub %memory 2000 %login_init_cmd source /opt/nec/ve/mpi/2.2.0/bin/necmpivars.sh %execute_command mpirun -v -ve 0-3 -np {{mpi_tasks}} ./palm # #---------------------------------------------------------------------------- # INPUT-commands, executed before running PALM - lines must start with "IC:" #---------------------------------------------------------------------------- #IC:ulimit -s unlimited # #---------------------------------------------------------------------------- # ERROR-commands - executed when program terminates abnormally #---------------------------------------------------------------------------- EC:[[ \$locat = execution ]] && cat RUN_CONTROL EC:[[ \$locat = execution ]] && cat PARTICLE_INFOS/* # #---------------------------------------------------------------------------- # OUTPUT-commands - executed when program terminates normally #---------------------------------------------------------------------------- # # Combine 1D- and 3D-profile output (these files are not usable for plotting) OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE # # Combine all particle information files OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO # # BATCH-directives to be used for batch jobs. # ATTENTION: The batch following batch directives still need to be adjusted for the # NEC Aurora system!!!!!!!!!!!!!! BD:#!/bin/bash BD:#PBS -N {{run_id}} BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}} BD:#PBS -l ncpus={{cores}} BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}} BD:#PBS -l mem={{memory}}mb BD:#PBS -W x=PARTITION:lena BD:#PBS -o {{job_protocol_file}} BD:#PBS -j oe BD:#PBS -q {{queue}}