| [892] | 1 | #$Id: .mrun.config.lcxe6 1044 2012-11-07 10:30:58Z heinze $ |
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| 2 | #column 1 column 2 column 3 |
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| 3 | #name of variable value of variable (~ must not be used) scope |
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| 4 | #---------------------------------------------------------------------------- |
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| 5 | %mainprog palm.f90 |
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| 6 | %base_directory $HOME/palm/current_version |
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| 7 | %base_data ~/palm/current_version/JOBS |
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| 8 | %source_path $base_directory/trunk/SOURCE |
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| 9 | %add_source_path $base_directory/USER_CODE/$fname |
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| 10 | %depository_path $base_directory/MAKE_DEPOSITORY |
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| 11 | %use_makefile true |
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| 12 | # |
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| 13 | # Enter your own host below by adding another line containing in the second |
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| 14 | # column your hostname (as provided by the unix command "hostname") and in the |
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| 15 | # third column the host identifier. Depending on your operating system, the |
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| 16 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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| 17 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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| 18 | # |
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| 19 | # The next line is just an example. Add your own line below or replace this line. |
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| 20 | %host_identifier hexagon* lcxe6 |
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| 21 | # |
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| 22 | # |
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| 23 | # The next block contains all informations for compiling the PALM code |
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| 24 | # and for generating and running the PALM executable using MPI. Replace all |
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| 25 | # required paths (given in <>) by the respective paths valid on your host. |
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| 26 | # Also replace <hi> by your host identifier (see above) in each line! |
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| 27 | # Compilernames, cpp-options and compiler-options are assuming |
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| 28 | # an Intel-Compiler and mpich2 on this host! Please change |
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| 29 | # appropriately, if you are using a different compiler / MPI-Version. |
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| 30 | # |
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| [1044] | 31 | # Additional hints: during mrun error messages will occur related to the |
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| 32 | # "module swap" command. You can simply ignore those messages. If you do not |
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| 33 | # know your project account, check the output of the "cost" command on hexagon |
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| 34 | # |
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| [911] | 35 | %tmp_user_catalog /work/<replace by your CrayXE6 username> lcxe6 parallel |
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| [920] | 36 | %tmp_data_catalog /work/<replace by your CrayXE6 username>/tmp/ lcxe6 parallel |
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| [911] | 37 | %compiler_name ftn lcxe6 parallel |
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| 38 | %compiler_name_ser ftn lcxe6 parallel |
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| [892] | 39 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__intel_openmp_bug lcxe6 parallel |
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| [911] | 40 | %netcdf_inc -I:/opt/cray/netcdf-hdf5parallel/default/netcdf-hdf5parallel-intel/include:-I/opt/cray/hdf5-parallel/default/hdf5-parallel-intel/include lcxe6 parallel |
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| 41 | %netcdf_lib -L/opt/cray/netcdf-hdf5parallel/default/netcdf-hdf5parallel-intel/lib:-lnetcdf:-lnetcdff:-L/opt/cray/hdf5-parallel/default/hdf5-parallel-intel/lib:-lhdf5_fortran:-lhdf5hl_fortran lcxe6 parallel |
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| 42 | %mopts -j:4 lcxe6 parallel |
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| 43 | %fopts -r8:-O3:-nbs:-convert:little_endian:-I:/opt/cray/mpt/default/xt/gemini/mpich2-intel/120/include lcxe6 parallel |
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| 44 | %lopts -r8:-O3:-nbs:-L:/opt/cray/mpt/default/xt/gemini/mpich2-intel/120/lib lcxe6 parallel |
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| 45 | %remote_username <replace by your CrayXE6 username> lcxe6 parallel |
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| [1044] | 46 | %memory 1000 lcxe6 parallel |
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| 47 | %project_account <replace by your project account> lcxe6 parallel |
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| 48 | %modules modules:Base-opts:pmi:hdf5-parallel:netcdf-hdf5parallel:xtpe-network-gemini:gni-headers lcxe6 parallel |
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| 49 | %login_init_cmd .:/opt/modules/default/init/ksh\;:.:/etc/bash.bashrc.local\;:module:swap:PrgEnv-cray:PrgEnv-intel\;:module:swap:cray-mpich2:xt-mpich2 lcxe6 parallel |
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| [911] | 50 | %email_notification <replace by your email address> lcxe6 parallel |
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| 51 | # |
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| [892] | 52 | %write_binary true restart |
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| 53 | # |
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| 54 | #---------------------------------------------------------------------------- |
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| 55 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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| 56 | #---------------------------------------------------------------------------- |
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| 57 | #IC: |
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| 58 | # |
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| 59 | #---------------------------------------------------------------------------- |
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| 60 | # ERROR-commands - executed when program terminates abnormally |
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| 61 | #---------------------------------------------------------------------------- |
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| 62 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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| 63 | EC:pwd; ls -al |
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| 64 | # |
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| 65 | #---------------------------------------------------------------------------- |
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| 66 | # OUTPUT-commands - executed when program terminates normally |
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| 67 | #---------------------------------------------------------------------------- |
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| 68 | # |
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| 69 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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| 70 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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| 71 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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| 72 | # |
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| 73 | # Combine all particle information files |
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| 74 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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| 75 | # |
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| 76 | #---------------------------------------------------------------------------- |
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| 77 | # List of input-files |
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| 78 | #---------------------------------------------------------------------------- |
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| 79 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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| 80 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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| 81 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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| 82 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
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| 83 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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| 84 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
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| 85 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
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| 86 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
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| 87 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
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| 88 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
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| 89 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 90 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
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| 91 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
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| 92 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
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| 93 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
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| 94 | # |
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| 95 | #---------------------------------------------------------------------------- |
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| 96 | # List of output-files |
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| 97 | #---------------------------------------------------------------------------- |
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| 98 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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| 99 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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| 100 | # |
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| 101 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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| 102 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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| 103 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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| 104 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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| 105 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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| 106 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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| 107 | # |
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| 108 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
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| 109 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
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| 110 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
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| 111 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
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| 112 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
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| 113 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
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| 114 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
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| 115 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
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| 116 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
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| 117 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
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| 118 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
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| 119 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
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| 120 | DATA_MASK_01_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01 nc |
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| 121 | DATA_MASK_01_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m01_av nc |
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| 122 | DATA_MASK_02_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02 nc |
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| 123 | DATA_MASK_02_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m02_av nc |
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| 124 | DATA_MASK_03_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03 nc |
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| 125 | DATA_MASK_03_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m03_av nc |
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| 126 | DATA_MASK_04_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04 nc |
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| 127 | DATA_MASK_04_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m04_av nc |
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| 128 | DATA_MASK_05_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05 nc |
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| 129 | DATA_MASK_05_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m05_av nc |
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| 130 | DATA_MASK_06_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06 nc |
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| 131 | DATA_MASK_06_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m06_av nc |
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| 132 | DATA_MASK_07_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07 nc |
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| 133 | DATA_MASK_07_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m07_av nc |
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| 134 | DATA_MASK_08_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08 nc |
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| 135 | DATA_MASK_08_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m08_av nc |
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| 136 | DATA_MASK_09_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09 nc |
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| 137 | DATA_MASK_09_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m09_av nc |
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| 138 | DATA_MASK_10_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10 nc |
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| 139 | DATA_MASK_10_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m10_av nc |
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| 140 | DATA_MASK_11_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11 nc |
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| 141 | DATA_MASK_11_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m11_av nc |
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| 142 | DATA_MASK_12_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12 nc |
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| 143 | DATA_MASK_12_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m12_av nc |
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| 144 | DATA_MASK_13_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13 nc |
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| 145 | DATA_MASK_13_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m13_av nc |
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| 146 | DATA_MASK_14_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14 nc |
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| 147 | DATA_MASK_14_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m14_av nc |
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| 148 | DATA_MASK_15_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15 nc |
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| 149 | DATA_MASK_15_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m15_av nc |
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| 150 | DATA_MASK_16_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16 nc |
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| 151 | DATA_MASK_16_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m16_av nc |
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| 152 | DATA_MASK_17_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17 nc |
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| 153 | DATA_MASK_17_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m17_av nc |
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| 154 | DATA_MASK_18_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18 nc |
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| 155 | DATA_MASK_18_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m18_av nc |
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| 156 | DATA_MASK_19_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19 nc |
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| 157 | DATA_MASK_19_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m19_av nc |
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| 158 | DATA_MASK_20_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20 nc |
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| 159 | DATA_MASK_20_AV_NETCDF out:loc:tr ma#:maf $base_data/$fname/OUTPUT _m20_av nc |
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| 160 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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| 161 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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| 162 | DATA_DVR out:loc:trpe dvr $base_data/$fname/OUTPUT _dvr |
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| 163 | # |
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| 164 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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| 165 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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| 166 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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| 167 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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| 168 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
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| 169 | # A BLANK LINE MUST FOLLOW |
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