1 | #$Id: .mrun.config.imuk_hlrn 998 2012-09-11 09:44:06Z knoop $ |
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2 | #column 1 column 2 column 3 |
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3 | #name of variable value of variable (~ must not be used) scope |
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4 | #---------------------------------------------------------------------------- |
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5 | %mainprog palm.f90 |
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6 | %base_directory $HOME/palm/current_version |
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7 | %base_data ~/palm/current_version/JOBS |
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8 | %source_path $base_directory/trunk/SOURCE |
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9 | %add_source_path $base_directory/USER_CODE/$fname |
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10 | %depository_path $base_directory/MAKE_DEPOSITORY |
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11 | %use_makefile true |
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12 | # |
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13 | # Enter your own host below by adding another line containing in the second |
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14 | # column your hostname (as provided by the unix command "hostname") and in the |
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15 | # third column the host identifier. Depending on your operating system, the |
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16 | # first characters of the host identifier should be "lc" (Linux cluster), "ibm" |
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17 | # (IBM-AIX), or "nec" (NEC-SX), respectively. |
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18 | %host_identifier service100 lcsgih |
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19 | %host_identifier r1* lcsgih |
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20 | %host_identifier h01* lcsgih |
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21 | %host_identifier r2* lcsgib |
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22 | %host_identifier b01* lcsgib |
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23 | %host_identifier inferno lcmuk |
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24 | # |
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25 | # The following blocks contain all information for compiling the PALM code |
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26 | # and for generating and running the PALM executable using MPI. Replace all |
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27 | # required paths (given in <>) by the respective paths valid on your host. |
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28 | # Please adjust compilernames, cpp-options, compiler-options etc. |
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29 | # appropriately for your own system(s), and please delete or comment out |
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30 | # blocks for unused systems. |
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31 | # |
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32 | # The following 'lcmuk parallel' block assumes PALM compilation and execution |
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33 | # on host inferno. Please note that other hosts within the IMUK linux cluster, |
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34 | # e.g. bora, may require different settings. |
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35 | # |
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36 | #%remote_username <replace by your IMUK username> lcmuk parallel |
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37 | #%tmp_user_catalog /home/<replace by your IMUK username>/palm/tmp/ lcmuk parallel |
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38 | %compiler_name mpif90 lcmuk parallel |
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39 | %compiler_name_ser ifort lcmuk parallel |
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40 | %cpp_options -cpp:-DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf lcmuk parallel |
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41 | %netcdf_inc -I:/muksoft/packages/netcdf/3.6.3/include lcmuk parallel |
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42 | %netcdf_lib -L/muksoft/packages/netcdf/3.6.3/lib:-lnetcdf lcmuk parallel |
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43 | %mopts -j:4 lcmuk parallel |
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44 | %fopts -fpe0:-O3:-r8:-fp-model:precise:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcmuk parallel |
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45 | %lopts -fpe0:-O3:-r8:-fp-model:precise:-ftz:-fno-alias:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-diag-disable:8290,8291 lcmuk parallel |
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46 | #%hostfile $base_directory/.hostfile lcmuk parallel |
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47 | # |
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48 | # |
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49 | %sgi_feature ice2 lcsgih parallel |
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50 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgih parallel |
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51 | %login_init_cmd .:/usr/share/modules/init/bash lcsgih parallel |
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52 | #%remote_username <replace by your HLRN username> lcsgih parallel |
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53 | %compiler_name ifort lcsgih parallel |
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54 | %compiler_name_ser ifort lcsgih parallel |
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55 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgih parallel |
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56 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgih parallel |
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57 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgih parallel |
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58 | %mopts -j:4 lcsgih parallel |
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59 | %fopts -fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgih parallel |
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60 | %lopts -fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgih parallel |
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61 | %memory 1500 lcsgih parallel |
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62 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgih parallel |
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63 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgih parallel |
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64 | # |
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65 | # |
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66 | # |
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67 | %sgi_feature ice2 lcsgih parallel trace |
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68 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgih parallel trace |
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69 | %login_init_cmd .:/usr/share/modules/init/bash lcsgih parallel trace |
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70 | #%remote_username <replace by your HLRN username> lcsgih parallel trace |
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71 | %compiler_name ifort lcsgih parallel trace |
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72 | %compiler_name_ser ifort lcsgih parallel trace |
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73 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgih parallel trace |
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74 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgih parallel trace |
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75 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgih parallel trace |
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76 | %mopts -j:4 lcsgih parallel trace |
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77 | %fopts -override-limits:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgih parallel trace |
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78 | %lopts -C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgih parallel trace |
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79 | %memory 1500 lcsgih parallel trace |
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80 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgih parallel trace |
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81 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgih parallel trace |
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82 | # |
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83 | # |
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84 | # |
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85 | %sgi_feature ice2 lcsgib parallel |
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86 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgib parallel |
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87 | %login_init_cmd .:/usr/share/modules/init/bash lcsgib parallel |
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88 | #%remote_username <replace by your HLRN username> lcsgib parallel |
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89 | %compiler_name ifort lcsgib parallel |
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90 | %compiler_name_ser ifort lcsgib parallel |
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91 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgib parallel |
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92 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgib parallel |
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93 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgib parallel |
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94 | %mopts -j:4 lcsgib parallel |
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95 | %fopts -fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgib parallel |
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96 | %lopts -fpe0:-O3:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgib parallel |
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97 | %memory 1500 lcsgib parallel |
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98 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgib parallel |
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99 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgib parallel |
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100 | # |
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101 | # |
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102 | # |
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103 | %sgi_feature ice2 lcsgib parallel trace |
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104 | %modules intel.compiler/11.1.072:mpt:phdf5/1.8.5-mpt-intel-11.1:pnetcdf/4.1.1-mpt-intel-11.1 lcsgib parallel trace |
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105 | %login_init_cmd .:/usr/share/modules/init/bash lcsgib parallel trace |
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106 | #%remote_username <replace by your HLRN username> lcsgib parallel trace |
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107 | %compiler_name ifort lcsgib parallel trace |
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108 | %compiler_name_ser ifort lcsgib parallel trace |
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109 | %cpp_options -DMPI_REAL=MPI_DOUBLE_PRECISION:-DMPI_2REAL=MPI_2DOUBLE_PRECISION:-D__netcdf:-D__netcdf4:-D__mpi2 lcsgib parallel trace |
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110 | %netcdf_inc -I:/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/include:-I:/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/include lcsgib parallel trace |
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111 | %netcdf_lib -L/sw/dataformats/pnetcdf/netcdf-4.1.1-mpt-intel-11.1/lib:-lnetcdf:-lnetcdff:-L/sw/dataformats/phdf5/hdf5-1.8.5-mpt-intel-11.1/lib:-lhdf5:-lhdf5_hl:-lz lcsgib parallel trace |
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112 | %mopts -j:4 lcsgib parallel trace |
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113 | %fopts -override-limits:-C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-convert:little_endian lcsgib parallel trace |
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114 | %lopts -C:-ftrapuv:-xS:-debug:extended:-check:nooutput_conversion:-O0:-fpe0:-g:-traceback:-cpp:-r8:-fp-model:precise:-align:all:-ftz:-fno-alias:-no-scalar-rep:-no-prec-div:-no-prec-sqrt:-ip:-nbs:-Vaxlib:-lmpi lcsgib parallel trace |
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115 | %memory 1500 lcsgib parallel trace |
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116 | #%tmp_data_catalog /gfs2/work/<replace by your HLRN username>/palm_restart_data lcsgib parallel trace |
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117 | #%tmp_user_catalog /gfs2/tmp/<replace by your HLRN username> lcsgib parallel trace |
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118 | # |
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119 | # |
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120 | %write_binary true restart |
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121 | # |
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122 | #---------------------------------------------------------------------------- |
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123 | # INPUT-commands, executed before running PALM - lines must start with "IC:" |
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124 | #---------------------------------------------------------------------------- |
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125 | #IC: |
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126 | # |
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127 | #---------------------------------------------------------------------------- |
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128 | # ERROR-commands - executed when program terminates abnormally |
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129 | #---------------------------------------------------------------------------- |
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130 | EC:[[ \$locat = execution ]] && cat RUN_CONTROL |
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131 | EC:pwd; ls -al |
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132 | # |
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133 | #---------------------------------------------------------------------------- |
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134 | # OUTPUT-commands - executed when program terminates normally |
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135 | #---------------------------------------------------------------------------- |
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136 | # |
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137 | # Combine 1D- and 3D-profile output (these files are not usable for plotting) |
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138 | OC:[[ -f LIST_PROFIL_1D ]] && cat LIST_PROFIL_1D >> LIST_PROFILE |
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139 | OC:[[ -f LIST_PROFIL ]] && cat LIST_PROFIL >> LIST_PROFILE |
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140 | # |
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141 | # Combine all particle information files |
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142 | OC:[[ -f PARTICLE_INFOS/_0000 ]] && cat PARTICLE_INFOS/* >> PARTICLE_INFO |
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143 | # |
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144 | #---------------------------------------------------------------------------- |
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145 | # List of input-files |
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146 | #---------------------------------------------------------------------------- |
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147 | PARIN in:job d3# $base_data/$fname/INPUT _p3d |
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148 | PARIN in:job d3f $base_data/$fname/INPUT _p3df |
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149 | TOPOGRAPHY_DATA in:locopt d3#:d3f $base_data/$fname/INPUT _topo |
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150 | BININ in:loc:flpe d3f $base_data/$fname/RESTART _d3d |
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151 | PARTICLE_RESTART_DATA_IN in:loc:flpe prtf $base_data/$fname/RESTART _rprt |
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152 | DATA_1D_PR_NETCDF in:locopt prf $base_data/$fname/OUTPUT _pr nc |
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153 | DATA_1D_SP_NETCDF in:locopt spf $base_data/$fname/OUTPUT _sp nc |
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154 | DATA_1D_TS_NETCDF in:locopt tsf $base_data/$fname/OUTPUT _ts nc |
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155 | DATA_1D_PTS_NETCDF in:locopt ptsf $base_data/$fname/OUTPUT _pts nc |
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156 | DATA_2D_XY_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy nc |
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157 | DATA_2D_XY_AV_NETCDF in:locopt xyf $base_data/$fname/OUTPUT _xy_av nc |
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158 | DATA_2D_XZ_NETCDF in:locopt xzf $base_data/$fname/OUTPUT _xz nc |
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159 | DATA_2D_YZ_NETCDF in:locopt yzf $base_data/$fname/OUTPUT _yz nc |
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160 | DATA_3D_NETCDF in:locopt 3df $base_data/$fname/OUTPUT _3d nc |
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161 | DATA_PRT_NETCDF in:locopt:pe prtf $base_data/$fname/OUTPUT _prt |
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162 | # |
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163 | #---------------------------------------------------------------------------- |
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164 | # List of output-files |
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165 | #---------------------------------------------------------------------------- |
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166 | BINOUT out:loc:flpe restart $base_data/$fname/RESTART _d3d |
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167 | PARTICLE_RESTART_DATA_OUT out:loc:flpe prt#:prtf $base_data/$fname/RESTART _rprt |
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168 | # |
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169 | RUN_CONTROL out:loc:tr d3# $base_data/$fname/MONITORING _rc |
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170 | RUN_CONTROL out:loc:tra d3f $base_data/$fname/MONITORING _rc |
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171 | HEADER out:loc:tr d3# $base_data/$fname/MONITORING _header |
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172 | HEADER out:loc:tra d3f $base_data/$fname/MONITORING _header |
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173 | CPU_MEASURES out:loc:tr d3# $base_data/$fname/MONITORING _cpu |
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174 | CPU_MEASURES out:loc:tra d3f $base_data/$fname/MONITORING _cpu |
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175 | # |
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176 | DATA_1D_PR_NETCDF out:loc:tr pr#:prf $base_data/$fname/OUTPUT _pr nc |
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177 | DATA_1D_SP_NETCDF out:loc:tr sp#:spf $base_data/$fname/OUTPUT _sp nc |
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178 | DATA_1D_TS_NETCDF out:loc:tr ts#:tsf $base_data/$fname/OUTPUT _ts nc |
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179 | DATA_1D_PTS_NETCDF out:loc:tr pts#:ptsf $base_data/$fname/OUTPUT _pts nc |
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180 | DATA_2D_XY_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy nc |
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181 | DATA_2D_XY_AV_NETCDF out:loc:tr xy#:xyf $base_data/$fname/OUTPUT _xy_av nc |
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182 | DATA_2D_XZ_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz nc |
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183 | DATA_2D_XZ_AV_NETCDF out:loc:tr xz#:xzf $base_data/$fname/OUTPUT _xz_av nc |
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184 | DATA_2D_YZ_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz nc |
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185 | DATA_2D_YZ_AV_NETCDF out:loc:tr yz#:yzf $base_data/$fname/OUTPUT _yz_av nc |
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186 | DATA_3D_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d nc |
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187 | DATA_3D_AV_NETCDF out:loc:tr 3d#:3df $base_data/$fname/OUTPUT _3d_av nc |
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188 | DATA_PRT_NETCDF out:loc:pe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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189 | DATA_PRT_NETCDF out:loc:trpe prt#:prtf $base_data/$fname/OUTPUT _prt nc |
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190 | DATA_DVR out:loc:trpe dvr $base_data/$fname/OUTPUT _dvr |
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191 | # |
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192 | DVRP_LOG out:loc:tr dv# $base_data/$fname/MONITORING _dvrp_log |
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193 | DVRP_LOG out:loc:tra dvf $base_data/$fname/MONITORING _dvrp_log |
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194 | PARTICLE_INFO out:loc:tr pt# $base_data/$fname/MONITORING _prt_info |
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195 | PARTICLE_INFO out:loc:tra ptf $base_data/$fname/MONITORING _prt_info |
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196 | PARTICLE_DATA out:loc:flpe prt#:prtf $base_data/$fname/OUTPUT _prt_dat |
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197 | # A BLANK LINE MUST FOLLOW |
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