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source: palm/tags/release-3.10/SCRIPTS/subjob

Last change on this file was 1290, checked in by raasch, 10 years ago
last commit documented fimm-, scirocco-, ibmy-, nech-, and sgi-specific code removed from scripts
Property svn:keywords set to `Id Rev`
File size: 50.2 KB

Line
1	#!/bin/ksh
2
3	# subjob - script for automatic generation and submission of batch-job files
4	# for various batch queuing systems
5
6	#--------------------------------------------------------------------------------#
7	# This file is part of PALM.
8	#
9	# PALM is free software: you can redistribute it and/or modify it under the terms
10	# of the GNU General Public License as published by the Free Software Foundation,
11	# either version 3 of the License, or (at your option) any later version.
12	#
13	# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
14	# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
15	# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
16	#
17	# You should have received a copy of the GNU General Public License along with
18	# PALM. If not, see <http://www.gnu.org/licenses/>.
19	#
20	# Copyright 1997-2012 Leibniz University Hannover
21	#--------------------------------------------------------------------------------#
22	#
23	# Current revisions:
24	# ------------------
25	#
26	#
27	# Former revisions:
28	# -----------------
29	# $Id: subjob 1290 2014-03-04 07:17:03Z banzhafs $
30	#
31	# 1289 2014-03-04 07:12:34Z raasch
32	# German comments translated to English
33	# fimm-, necriam-, scirocco-, ibmy-, and sgi-specific code removed
34	#
35	# 1279 2014-01-28 12:10:14Z raasch
36	# node calculation modified due to changes in mrun (tasks_per_node must not be
37	# an integral divisor of numprocs any more)
38	#
39	# 1274 2014-01-09 13:14:54Z heinze
40	# adjustments for lccrayh
41	#
42	# 1266 2013-12-11 12:07:34Z heinze
43	# further adjustments for lccrayb (use msub instead of qsub)
44	#
45	# 1264 2013-12-09 12:46:09Z fricke
46	# Bugfix: Using number of nodes instead of number of processors (lccrayb)
47	#
48	# 1262 2013-12-09 10:57:20Z fricke
49	# further adjustments for lccrayb
50	#
51	# 1260 2013-12-04 12:48:04Z raasch
52	# jaboticaba admitted
53	#
54	# 1255 2013-11-07 14:43:35Z raasch
55	# further adjustments for lccrayb
56	#
57	# 1224 2013-09-16 07:27:23Z raasch
58	# first adjustments for lccrayb
59	#
60	# 1202 2013-07-10 16:22:07Z witha
61	# adjustments for Forwind cluster (lcflow)
62	#
63	# 1199 2013-07-05 14:52:22Z raasch
64	# adjustments for CSC Helsinki (lccrayf)
65	#
66	# use of cluster/express queue enabled (ibmh)
67	# vinessa added (imuk)
68	#
69	# 1103 2013-02-20 02:15:53Z raasch
70	# bash compatibility adjustments (usage of OPTIND, output formatting with printf
71	# instead typeset -L/R),
72	# further adjustments for lckyuh
73	#
74	# 2013-02-10 01:47:43Z raasch
75	# adjustments for Kyushu-Univeristy computing center (lckyuh - hayaka)
76	# and for Forwind cluster (lcflow)
77	#
78	# 1094 2013-02-03 01:52:12Z raasch
79	# new option -P for explicit setting of ssh/scp port,
80	# decalpha parts (yonsei) removed
81	#
82	# 2013-02-02 07:06:13Z raasch
83	# adjustments for Kyushu-University computing center (lckyut - tatara)
84	# old changelog messages removed
85	#
86	# 1046 2012-11-09 14:38:45Z maronga
87	# code put under GPL (PALM 3.9)
88	#
89	# 08/07/94 - Siggi - first version finished
90	# 29/06/94 - Siggi - script development started
91	#--------------------------------------------------------------------------------#
92	# subjob - script for automatic generation and submission of batch-job files
93	# for various batch queuing systems
94	#--------------------------------------------------------------------------------#
95
96
97	# VARIABLE-DECLARATIONS AND DEFAULT VALUES
98	delete_dayfile=false
99	email_notification=none
100	group_number=none
101	locat=normal
102	no_default_queue=none
103	no_submit=false
104	job_catalog="~/job_queue"
105	job_name=none
106	local_user=$LOGNAME
107	node_usage=shared
108	numprocs=0
109	punkte="..........................................................."
110	submcom=qsub
111	queue=default
112	remote_host=none
113	remote_user=""
114	verify=true
115
116	typeset -i cputime=0 memory=0 Memory=0 minuten resttime sekunden stunden
117	typeset -i inumprocs mpi_tasks=0 nodes=0 processes_per_node=0 tasks_per_node=0 threads_per_task=1
118
119
120
121	# ERROR HANDLING
122	# IN CASE OF EXIT:
123	trap 'if [[ $locat != normal ]]
124	then
125	case $locat in
126	(option) printf "\n --> available optios can be displayed"
127	printf " by typing:"
128	printf "\n \"subjob ?\" \n";;
129	(ftpcopy\|parameter\|scp\|verify) printf "\n";;
130	(*) printf "\n +++ unknown error"
131	printf "\n please inform S. Raasch!\n"
132	esac
133	[[ -f $job_to_send ]] && rm $job_to_send
134	printf "\n\n+++ SUBJOB killed \n\n"
135	fi' exit
136
137
138	# IN CASE OF TERMINAL-BREAK:
139	trap '[[ -f $job_to_send ]] && rm $job_to_send
140	printf "\n\n+++ SUBJOB killed \n\n"
141	exit
142	' 2
143
144
145
146
147	# DETERMINE NAME OF LOCAL HOST
148	local_host=$(hostname)
149
150
151
152	# SET HOST-SPECIFIC VARIABLES VEREINBAREN (CHECK, IF LOCAL HOST
153	# IS ADMITTED AT ALL)
154	# NOTE: ONE OF THE ENTRIES FOR "lck" OR "lckordi" ALWAYS HAS TO BE
155	# COMMENT OUT, BECAUSE THE HOSTNAME (node*) IS SAME FOR BOTH MACHINES
156	case $local_host in
157	(ambiel-lx) local_addres=134.106.74.48; local_host=lcfor;;
158	(atmos) local_addres=172.20.25.35; local_host=lcide;;
159	(austru) local_addres=130.75.105.128; local_host=lcmuk;;
160	(autan) local_addres=130.75.105.57; local_host=lcmuk;;
161	(bora) local_addres=130.75.105.103; local_host=lcmuk;;
162	(b04*) local_addres=133.5.4.33; local_host=lckyuh;;
163	(blizzard1) local_addres=136.172.40.15; local_host=ibmh;;
164	(blogin\|bxc) local_addres=130.73.233.1; local_host=lccrayb;;
165	(hlogin\|hxc) local_addres=130.75.4.1; local_host=lccrayh;;
166	(breva) local_addres=130.75.105.98; local_host=lcmuk;;
167	(buran) local_addres=130.75.105.58; local_host=lcmuk;;
168	(caurus) local_addres=130.75.105.19; local_host=lcmuk;;
169	(climate*) local_addres=165.132.26.68; local_host=lcyon;;
170	(clogin*) local_addres=86.50.166.21; local_host=lccrayf;;
171	(cs*) local_addres=136.172.44.131; local_host=nech;;
172	(elephanta) local_addres=130.75.105.6; local_host=lcmuk;;
173	(flow01) local_addres=10.141.255.71; local_host=lcflow;;
174	(flow02) local_addres=10.141.255.72; local_host=lcflow;;
175	(node*) local_addres=165.132.26.61 local_host=lck;;
176	# (node*) local_addres=210.219.61.8 local_host=lckordi;;
177	(gaia*) local_addres=150.183.146.24; local_host=ibmkisti;;
178	(gallego) local_addres=130.75.105.10; local_host=lcmuk;;
179	(gregale) local_addres=130.75.105.109; local_host=lcmuk;;
180	(hababai) local_addres=130.75.105.108; local_host=lcmuk;;
181	(hayaka*) local_addres=133.5.4.33; local_host=lckyuh;;
182	(hexagon.bccs.uib.no) local_addres=129.177.20.113; local_host=lcxe6;;
183	(hx*) local_addres=133.3.51.11; local_host=lckyoto;;
184	(inferno) local_addres=130.75.105.5; local_host=lcmuk;;
185	(irifi) local_addres=130.75.105.104; local_host=lcmuk;;
186	(jaboticaba) local_addres=150.163.25.181; local_host=lcbr;;
187	(sno) local_addres=130.75.105.113; local_host=lcmuk;;
188	(levanto) local_addres=130.75.105.45; local_host=lcmuk;;
189	(login*) local_addres=118.128.66.223; local_host=lckiaps;;
190	(maestro) local_addres=130.75.105.2; local_host=lcmuk;;
191	(meller) local_addres=134.106.74.155; local_host=lcfor;;
192	(meteo-login*) local_addres=193.166.211.144;local_host=lcxt5m;;
193	(hexagon*) local_addres=129.177.20.113; local_host=lcxe6;;
194	(nobel*) local_addres=150.183.5.101; local_host=ibms;;
195	(orkan) local_addres=130.75.105.3; local_host=lcmuk;;
196	(ostria) local_addres=130.75.105.106; local_host=lcmuk;;
197	(paesano) local_addres=130.75.105.46; local_host=lcmuk;;
198	(pcj*) local_addres=172.31.120.1; local_host=lckyut;;
199	(pingui) local_addres=134.106.74.118; local_host=lcfor;;
200	(quanero) local_addres=130.75.105.107; local_host=lcmuk;;
201	(rte*) local_addres=133.5.185.60; local_host=lcrte;;
202	(shiokaze-lx) local_addres=134.106.74.123; local_host=lcfor;;
203	(sisu-login*) local_addres=86.50.166.21; local_host=lccrayf;;
204	(solano) local_addres=130.75.105.110; local_host=lcmuk;;
205	(sugoka*) local_addres=172.31.120.1; local_host=lckyut;;
206	(t2a*) local_addres=10.1.6.165; local_host=lctit;;
207	(urban*) local_addres=147.46.30.151 local_host=lcsb;;
208	(vinessa) local_addres=130.75.105.112; local_host=lcmuk;;
209	(vorias) local_addres=172.20.25.43; local_host=lcmuk;;
210	(*.cc.kyushu-u.ac.jp) local_addres=133.5.4.129; local_host=ibmku;;
211	(*) printf "\n +++ \"$local_host\" unknown";
212	printf "\n please contact the PALM group at IMUK";
213	locat=parameter; exit;;
214	esac
215
216
217
218	# BY DEFAULT, THE REMOTE HOST IS THE LOCAL HOST
219	remote_host=$local_host
220
221
222
223
224	# READ THE SHELLSCRIPT-OPTIONS
225	while getopts :c:dDe:g:h:m:n:N:O:P:q:t:T:u:vX: option
226	do
227	case $option in
228	(c) job_catalog=$OPTARG;;
229	(d) delete_dayfile=true;;
230	(D) no_submit=true;;
231	(e) email_notification=$OPTARG;;
232	(g) group_number=$OPTARG;;
233	(h) remote_host=$OPTARG;;
234	(m) memory=$OPTARG;;
235	(n) job_name=$OPTARG;;
236	(N) node_usage=$OPTARG;;
237	(O) threads_per_task=$OPTARG;;
238	(P) scp_port=$OPTARG;;
239	(q) no_default_queue=$OPTARG;;
240	(t) cputime=$OPTARG;;
241	(T) tasks_per_node=$OPTARG;;
242	(u) remote_user=$OPTARG;;
243	(v) verify=false;;
244	(X) numprocs=$OPTARG;;
245	(\?) printf "\n +++ Option $OPTARG unknown \n";
246	locat=option; exit;;
247	esac
248	done
249
250
251	# GET THE NAME OF THE JOBFILE AS NEXT ARGUMENT
252	(( to_shift = $OPTIND - 1 ))
253	shift $to_shift; file_to_send=$1
254
255
256	# OUTPUT OF SHORT DESCRIPTION OF SCRIPT-OPTIONS
257	if [ "$1" = "?" ]
258	then
259	(printf "\n *** subjob can be called as follows:\n"
260	printf "\n subjob -c.. -d -D -h.. -m.. -q.. -t.. -u.. -v <jobfile>\n"
261	printf "\n Description of available options:\n"
262	printf "\n Option Description Default-Value"
263	printf "\n -c job-input- and output-catalog ~/job_queue"
264	printf "\n -d no job-protocol will be created ---"
265	printf "\n -D only the job-file will be created ---"
266	printf "\n -h execution host, available hosts: $remote_host"
267	printf "\n ibm, ibmh, ibmkisti, ibmku, ibms, lc...,"
268	printf "\n lckiaps, lctit, nech"
269	printf "\n -m memory demand per process in MByte ---"
270	printf "\n -n jobname <jobdatei>"
271	printf "\n -O threads per task (for OpenMP usage) 1"
272	printf "\n -P ssh/scp port default port"
273	printf "\n -q job-queue to be used default"
274	printf "\n -t allowed cpu-time in seconds ---"
275	printf "\n -T tasks per node (on parallel hosts) ---"
276	printf "\n -u username on execution host from .netrc"
277	printf "\n -v no prompt for confirmation ---"
278	printf "\n -X # of processors (on parallel hosts) 1"
279	printf "\n "
280	printf "\n The only possible positional parameter is <jobfile>:"
281	printf "\n The complete NQS-job must be provided here."
282	printf "\n <jobfile>=? creates this outline\n\n") \| more
283	exit
284	fi
285
286
287
288	# CHECK, IF JOB-FILE HAS BEEN GIVEN AS ARGUMENT AND IF THE FILE ITSELF EXISTS
289	if [[ "$file_to_send" = "" ]]
290	then
291	printf "\n +++ job-file missing"
292	locat=parameter; exit
293	else
294	if [[ -f $file_to_send ]]
295	then
296	true
297	else
298	printf "\n +++ job-file: "
299	printf "\n $file_to_send"
300	printf "\n does not exist"
301	locat=parameter; exit
302	fi
303	fi
304
305
306
307	# IF NO JOBNAME HAS BEEN GIVEN, JOBNAME IS SET TO THE NAME OF THE JOB-FILE,
308	# PROVIDED THAT THE JOB-FILE NAME DOES NOT CONTAIN ANY PATH
309	if [[ $job_name = none ]]
310	then
311	job_name=$file_to_send
312	fi
313	if [[ $(echo $job_name \| grep -c "/") != 0 ]]
314	then
315	printf "\n +++ job-file name: "
316	printf "\n $job_name"
317	printf "\n must not contain \"/\"-characters"
318	locat=parameter; exit
319	fi
320
321
322
323
324	# SET HOST-SPECIFIC QUANTITIES, OR TERMINATE IN CASE OF UNKNOWN HOST,
325	# OR IF NO HOST HAS BEEN GIVEN
326	if [[ $remote_host = none ]]
327	then
328	printf "\n +++ host missing"
329	locat=option; exit
330	else
331	case $remote_host in
332	(ibm) queue=p690_standard; remote_addres=134.76.99.81; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
333	(ibmh) queue=cluster; remote_addres=136.172.40.15; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
334	(ibmkisti) queue=class.32plus; remote_addres=150.183.146.24; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
335	(ibmku) queue=s4; remote_addres=133.5.4.129; submcom=/usr/local/bin/llsubmit;;
336	(ibms) queue=p_normal; remote_addres=150.183.5.101; submcom=/usr/lpp/LoadL/full/bin/llsubmit;;
337	(lccrayb) queue=testq; remote_addres=130.73.233.1; submcom=/opt/moab/7.2.6/bin/msub;;
338	(lccrayh) queue=mpp1testq; remote_addres=130.75.4.1; submcom=/opt/moab/7.2.6/bin/msub;;
339	(lccrayf) queue=small; remote_addres=86.50.166.21; submcom=/opt/slurm/default/bin/sbatch;;
340	(lcflow) remote_addres=10.140.1.71; submcom=/cm/shared/apps/sge/6.2u5p2/bin/lx26-amd64/qsub;;
341	(lckyoto) remote_addres=133.3.51.11; submcom=/thin/local/bin/qsub;;
342	(lck) remote_addres=165.132.26.61; submcom=/usr/torque/bin/qsub;;
343	(lckiaps) remote_addres=118.128.66.223; submcom=/cm/shared/apps/pbspro/11.0.2.110766/bin/qsub;;
344	(lckordi) remote_addres=210.219.61.8; submcom=/usr/torque/bin/qsub;;
345	(lckyuh) remote_addres=133.5.4.33; submcom=/usr/bin/pjsub;;
346	(lckyut) remote_addres=133.5.4.37; submcom=/usr/bin/pjsub;;
347	(lcsb) remote_addres=147.46.30.151; submcom=/usr/torque/bin/qsub;;
348	(lctit) queue=S; remote_addres=10.1.6.165; submcom=/opt/pbs/tools/bin/t2sub;;
349	(lcxe6) remote_addres=129.177.20.113; submcom=/opt/torque/2.5.10/bin/qsub;;
350	(lcxt5m) remote_addres=193.166.211.144; submcom=/opt/pbs/10.1.0.91350/bin/qsub;;
351	(lcyon) remote_addres=165.132.26.68; submcom=/usr/torque/bin/qsub;;
352	(nech) qsubmem=memsz_job; qsubtime=cputim_job; remote_addres=136.172.44.147; submcom="/usr/local/bin/qsub";;
353	(*) printf "\n +++ hostname \"$remote_host\" not allowed";
354	locat=parameter; exit;;
355	esac
356	fi
357
358
359	# CHECK, IF A VALID QUEUE HAS BEEN GIVEN
360	if [[ $no_default_queue != none ]]
361	then
362	error=false
363	ndq=$no_default_queue
364	case $remote_host in
365	(ibm) case $ndq in
366	(p690_express\|p690_standard\|p690_long) error=false;;
367	(*) error=true;;
368	esac;;
369	(ibmh) case $ndq in
370	(cluster\|express) error=false;;
371	(*) error=true;;
372	esac;;
373	(ibmkisti) case $ndq in
374	(class.32plus\|class.1-2\|class.2-32) error=false;;
375	(*) error=true;;
376	esac;;
377	(ibmku) case $ndq in
378	(sdbg1\|sdbg2\|sdbg4\|s4\|s16\|s32\|s32-s) error=false;;
379	(*) error=true;;
380	esac;;
381	(ibms) case $ndq in
382	(express\|normal\|p_express\|p_normal\|p_normal_1.3\|p_normal_1.7\|grand) error=false;;
383	(*) error=true;;
384	esac;;
385	(lccrayb) case $ndq in
386	(mpp1q\|testq\|specialm1q) error=false;;
387	(*) error=true;;
388	esac;;
389	(lccrayh) case $ndq in
390	(mpp1q\|mpp1testq\|specialm1q\|dataq) error=false;;
391	(*) error=true;;
392	esac;;
393	(lccrayf) case $ndq in
394	(usup\|test*\|small\|large) error=false;;
395	(*) error=true;;
396	esac;;
397	(lcflow) case $ndq in
398	(cfd_lom_long.q\|cfd_him_long.q\|cfd_lom_serl.q\|cfd_lom_shrt.q\|cfd_him_shrt.q) error=false;;
399	(*) error=true;;
400	esac;;
401	(lckiaps) case $ndq in
402	(express\|normal) error=false;;
403	(*) error=true;;
404	esac;;
405	(lckyoto) case $ndq in
406	(eh\|ph) error=false;;
407	(*) error=true;;
408	esac;;
409	(lckyuh) case $ndq in
410	(fx-dbg\|fx-single\|fx-small\|fx-middle\|fx-large) error=false;;
411	(*) error=true;;
412	esac;;
413	(lckyut) case $ndq in
414	(cx-dbg\|cx-single\|cx-small\|cx-middle\|cx-large) error=false;;
415	(*) error=true;;
416	esac;;
417	(lctit) case $ndq in
418	(G\|L128\|L256\|L512H\|S\|S96\|V) error=false;;
419	(*) error=true;;
420	esac;;
421	(t3eb) case $ndq in
422	(berte\|p50\|p100\|p392\|forfree\|p25himem) error=false;;
423	(*) error=true;;
424	esac;;
425	(t3eh) case $ndq in
426	(para_t3e\|em\|k\|l\|lm\|comp_t3e\|c\|p\|ht) error=false;;
427	(*) error=true;;
428	esac;;
429	(t3ej2\|t3ej5) case $ndq in
430	(low\|normal\|high) error=false;;
431	(*) error=true;;
432	esac;;
433	(t3es) case $ndq in
434	(batch\|serial-4\|pe4\|p48\|pe16\|pe32\|pe64\|pe128) error=false;;
435	(*) error=true;;
436	esac;;
437	esac
438	if [[ $error = true ]]
439	then
440	printf "\n +++ queue \"$no_default_queue\" on host \"$remote_host\" not allowed"
441	locat=parameter; exit
442	else
443	queue=$no_default_queue
444	fi
445	fi
446
447
448
449	# CHECK THE CPU-TIME
450	# SPLIT TIME INTO HOURS, MINUTES, AND SECONDS
451	done=false
452	while [[ $done = false ]]
453	do
454	if (( $cputime <= 0 ))
455	then
456	printf "\n +++ wrong cpu-time or cpu-time missing"
457	printf "\n >>> Please type cpu-time in seconds as INTEGER:"
458	printf "\n >>> "
459	read cputime 1>/dev/null 2>&1
460	else
461	done=true
462	fi
463	done
464	if [[ $remote_host = nech ]]
465	then
466	if (( tasks_per_node != 0 ))
467	then
468	(( cputime = cputime * tasks_per_node ))
469	elif [[ $numprocs != 0 ]]
470	then
471	(( cputime = cputime * numprocs ))
472	fi
473	fi
474	(( stunden = cputime / 3600 ))
475	(( resttime = cputime - stunden * 3600 ))
476	(( minuten = resttime / 60 ))
477	(( sekunden = resttime - minuten * 60 ))
478	timestring=${stunden}:${minuten}:${sekunden}
479
480
481
482	# CHECK THE MEMORY DEMAND
483	done=false
484	while [[ $done = false ]]
485	do
486	if (( memory <= 0 ))
487	then
488	printf "\n +++ wrong memory demand or memory demand missing"
489	printf "\n >>> Please type memory in MByte per process as INTEGER:"
490	printf "\n >>> "
491	read memory 1>/dev/null 2>&1
492	else
493	done=true
494	fi
495	done
496
497	if [[ $remote_host = nech ]]
498	then
499	if (( tasks_per_node != 0 ))
500	then
501	(( Memory = memory * tasks_per_node / 1000 ))
502	elif [[ $numprocs != 0 ]]
503	then
504	(( Memory = memory * numprocs / 1000 ))
505	else
506	(( Memory = memory / 1000 ))
507	fi
508	elif [[ $remote_host = lctit ]]
509	then
510	(( Memory = memory * tasks_per_node / 1000 ))
511	fi
512
513
514	# MEMORY DEMAND IN CASE OF OPENMP-USAGE ON IBM-SYSTEMS
515	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
516	then
517	(( memory = memory * threads_per_task ))
518	fi
519
520
521	# CALCULATE NUMBER OF REQUIRED NODES
522	if (( tasks_per_node != 0 ))
523	then
524	(( nodes = ( numprocs - 1 ) / ( tasks_per_node * threads_per_task ) + 1 ))
525	fi
526
527
528	# CALCULATE NUMBER OF PROCESSES PER NODE
529	(( processes_per_node = tasks_per_node * threads_per_task ))
530
531
532	# CALCULATE NUMBER OF MPI TASKS
533	(( mpi_tasks = numprocs / threads_per_task ))
534
535
536	# SET PORT NUMBER OPTION FOR CALLS OF ssh/scp, subjob AND batch_scp SCRIPTS
537	if [[ "$scp_port" != "" ]]
538	then
539	PORTOPT="-P $scp_port"
540	SSH_PORTOPT="-p $scp_port"
541	fi
542
543
544	# HEADER-OUTPUT
545	if [[ $verify = true ]]
546	then
547	printf "\n\n"
548	printf "#--------------------------------------------------------------# \n"
549	spalte1=SUBJOB;spalte2=$(date)
550	printf "\| %-20s%40s \| \n" "$spalte1" "$spalte2"
551	printf "\| \| \n"
552	printf "\| values of parameters/options: \| \n"
553	spalte1=$(echo local_host$punkte \| cut -c-20)
554	spalte2=$punkte$local_host
555	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
556	spalte1=$(echo remote_host$punkte \| cut -c-20)
557	spalte2=$punkte$remote_host
558	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
559	spalte1=$(echo queue$punkte \| cut -c-20)
560	spalte2=$punkte$queue
561	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
562	spalte1=$(echo memory$punkte \| cut -c-20)
563	spalte2="$punkte$memory mb"
564	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
565	spalte1=$(echo cputime$punkte \| cut -c-20)
566	spalte2="$punkte$cputime sec"
567	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
568	spalte1=$(echo job_name$punkte \| cut -c-20)
569	spalte2="$punkte$job_name"
570	printf "\| %-20s%40s \| \n" "$spalte1" "${spalte2: -40}"
571	printf "#--------------------------------------------------------------# \n\n"
572
573
574	# QUERY CHECK
575	antwort="dummy"
576	while [[ $antwort != y && $antwort != Y && $antwort != n && $antwort != N ]]
577	do
578	read antwort?" >>> continue (y/n) ? "
579	done
580	if [[ $antwort = n \|\| $antwort = N ]]
581	then
582	locat=verify; exit
583	fi
584	printf "\n"
585	fi
586
587
588
589	# GENERATE RANDOM IDENTIFIER, AND DETERMINE THE JOBNAME ON THE TARGET HOST
590	identifier=$RANDOM
591	job_on_remhost=${job_name}_${identifier}_$local_host
592	job_to_send=job_to_send_$identifier
593	if [[ $delete_dayfile = false ]]
594	then
595	remote_dayfile=${local_host}_${job_name}_result_$identifier
596	local_dayfile=${remote_host}_${job_name}
597	else
598	remote_dayfile=/dev/null
599	fi
600
601
602
603	# GENERATE THE BATCH-JOB SCRIPTS (FOR QUEUEING-SYSTEMS qsub/msub/LoadLeveler)
604	if [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs != 0 ]]
605	then
606
607	# GENERAL LOADLEVELER SETTINGS
608	execute_in_shell="#!/bin/ksh"
609	use_shell="# @ shell = /bin/ksh"
610	consumable_memory="ConsumableMemory($memory mb)"
611	class="# @ class = $queue"
612	environment="# @ environment = OMP_NUM_THREADS=$threads_per_task; MP_SHARED_MEMORY=yes"
613	network_to_use="# @ network.mpi = sn_all,shared,us"
614	data_limit="# @ data_limit = 1.76gb"
615	image_size="# @ image_size = 50"
616	wall_clock_limit="# @ wall_clock_limit = ${timestring},$timestring"
617
618	if [[ $email_notification = none ]]
619	then
620	notify_user=""
621	else
622	notify_user="# @ notify_user = $email_notification"
623	if [[ $delete_dayfile = true ]]
624	then
625	notification='# @ notification = never'
626	fi
627	fi
628
629	if [[ $remote_host = ibmh ]]
630	then
631	data_limit=""
632	network_to_use=""
633	class="# @ class = $queue"
634	environment=""
635	rset="# @ rset = RSET_MCM_AFFINITY"
636	task_affinity="# @ task_affinity = core(1)"
637	elif [[ $remote_host = ibmkisti ]]
638	then
639	network_to_use="# @ network.MPI = sn_all,shared,US"
640	wall_clock_limit="# @ wall_clock_limit = $timestring"
641	if [[ $threads_per_task = 1 ]]
642	then
643	rset="# @ rset = RSET_MCM_AFFINITY"
644	mcm_affinity_options="# @ mcm_affinity_options = mcm_mem_pref mcm_sni_none mcm_distribute"
645	fi
646	environment=""
647	use_shell=""
648	data_limit=""
649	image_size=""
650	elif [[ $remote_host = ibmku ]]
651	then
652	execute_in_shell="#!/usr/bin/ksh"
653	use_shell="# @ shell = /usr/bin/ksh"
654	consumable_memory=""
655	environment=""
656	network_to_use="# @ network.mpi = sn_all,shared,us"
657	data_limit=""
658	image_size=""
659	elif [[ $remote_host = ibms ]]
660	then
661	network_to_use="# @ network.mpi = csss,shared,us"
662	fi
663
664	cat > $job_to_send << %%END%%
665	$execute_in_shell
666	$use_shell
667
668	# @ job_type = parallel
669	# @ job_name = $job_name
670	# @ resources = ConsumableCpus($threads_per_task) $consumable_memory
671	# @ output = $remote_dayfile
672	# @ error = $remote_dayfile
673	$wall_clock_limit
674	$image_size
675	$class
676	$environment
677	$network_to_use
678	$data_limit
679	$rset
680	$mcm_affinity_options
681	$task_affinity
682	$notification
683	$notify_user
684
685	%%END%%
686
687	if (( nodes > 0 ))
688	then
689
690	if [[ $remote_host != ibmkisti ]]
691	then
692
693	cat >> $job_to_send << %%END%%
694	# @ node = $nodes
695	# @ tasks_per_node = $processes_per_node
696	# @ node_usage = $node_usage
697	# @ queue
698
699	%%END%%
700
701	else
702
703	cat >> $job_to_send << %%END%%
704	# @ total_tasks = $mpi_tasks
705	# @ blocking = unlimited
706	# @ queue
707
708	%%END%%
709
710	fi
711
712	else
713
714	cat >> $job_to_send << %%END%%
715	# @ blocking = unlimited
716	# @ total_tasks = $numprocs
717	# @ node_usage = $node_usage
718	# @ queue
719
720	%%END%%
721
722	fi
723
724	# WORKAROUND BECAUSE OF SILLY JOB FILTER ON ibmkisti
725	if [[ $remote_host = ibmkisti && $threads_per_task != 1 ]]
726	then
727	echo "export OMP_NUM_THREADS=$threads_per_task" >> $job_to_send
728	fi
729
730	elif [[ $(echo $remote_host \| cut -c1-3) = ibm && $numprocs = 0 ]]
731	then
732
733	cat > $job_to_send << %%END%%
734	#!/bin/ksh
735
736	# @ job_type = serial
737	# @ node_usage = $node_usage
738	# @ job_name = palm
739	# @ wall_clock_limit = ${timestring},$timestring
740	# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)
741	# @ output = $remote_dayfile
742	# @ error = $remote_dayfile
743	$class
744	$notification
745
746	# @ queue
747
748	%%END%%
749
750	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
751	then
752
753	if [[ $numprocs != 0 ]]
754	then
755	cat > $job_to_send << %%END%%
756	#!/bin/bash
757	#PBS -N $job_name
758	#PBS -l walltime=$timestring
759	#PBS -l nodes=$nodes:ppn=$processes_per_node
760	#PBS -o $remote_dayfile
761	#PBS -j oe
762	#PBS -q $queue
763
764	$module_calls
765
766	%%END%%
767
768	else
769
770	continue
771
772	fi
773
774	elif [[ $remote_host = lccrayf ]]
775	then
776
777	if [[ $numprocs != 0 ]]
778	then
779	cat > $job_to_send << %%END%%
780	#!/bin/bash -l
781	#SBATCH -J $job_name
782	#SBATCH -t $timestring
783	#SBATCH -N $nodes
784	#SBATCH --ntasks-per-node=$processes_per_node
785	#SBATCH -p $queue
786	#SBATCH -o $remote_dayfile
787	#SBATCH -e $remote_dayfile
788
789	$init_cmds
790	$module_calls
791
792	%%END%%
793
794	else
795	cat > $job_to_send << %%END%%
796	#!/bin/bash -l
797	#SBATCH -J $job_name
798	#SBATCH -t $timestring
799	#SBATCH -l ncpus=1
800	#SBATCH -l pmem=${memory}mb
801	#SBATCH -m abe
802	#SBATCH -o $remote_dayfile
803	#SBATCH -e $remote_dayfile
804
805	$init_cmds
806	$module_calls
807
808	%%END%%
809
810	fi
811
812	elif [[ $remote_host = lcflow ]]
813	then
814	if [ $memory -gt 1800 ]; then
815	use_himem=""
816	else
817	use_himem="#"
818	fi
819	if [[ $numprocs != 0 ]]
820	then
821	pe_set="#$ -pe impi41 $numprocs"
822	else
823	pe_set="#$ -pe impi41 1"
824	fi
825	if [[ $queue = default ]]
826	then
827	queue_set=""
828	else
829	queue_set="#$ -q $queue"
830	fi
831	[[ "$disc_space" = "" ]] && disc_space=50
832
833	cat > $job_to_send << %%END%%
834	#!/bin/bash
835	#$ -S /bin/bash
836	#$ -N $job_name
837	#$ -cwd
838	#$ -l h_rt=$timestring
839	#$ -l h_vmem=${memory}M
840	#$ -o $remote_dayfile
841	#$ -j y
842	$pe_set
843	#$ -R y
844	${use_himem}#$ -l highmem=true
845	#$ -l h_fsize=${disc_space}G
846	$queue_set
847
848	%%END%%
849
850	elif [[ $remote_host = lck \|\| $remote_host = lckordi \|\| $remote_host = lcsb ]]
851	then
852
853	if [[ $numprocs != 0 ]]
854	then
855	cat > $job_to_send << %%END%%
856	#!/bin/ksh
857	#PBS -N $job_name
858	#PBS -l walltime=$timestring
859	#PBS -l ncpus=$numprocs
860	#PBS -l pmem=${memory}mb
861	#PBS -o $remote_dayfile
862	#PBS -l nodes=$nodes:ppn=${processes_per_node}
863	#PBS -j oe
864
865	mpd &
866
867	%%END%%
868
869	else
870	cat > $job_to_send << %%END%%
871	#!/bin/ksh
872	#PBS -N $job_name
873	#PBS -l walltime=$timestring
874	#PBS -l ncpus=1
875	#PBS -l pmem=${memory}mb
876	#PBS -o $remote_dayfile
877	#PBS -j oe
878
879	%%END%%
880
881	fi
882
883	elif [[ $remote_host = lckiaps ]]
884	then
885
886	if [[ $numprocs != 0 ]]
887	then
888	cat > $job_to_send << %%END%%
889	#!/bin/ksh
890	#PBS -N $job_name
891	#PBS -l walltime=$timestring
892	#PBS -l select=1:ncpus=$numprocs
893	#PBS -l pmem=${memory}mb
894	#PBS -q $queue
895	#PBS -o $remote_dayfile
896	#PBS -j oe
897	#PBS -V
898
899	%%END%%
900
901	else
902	cat > $job_to_send << %%END%%
903	#!/bin/ksh
904	#PBS -N $job_name
905	#PBS -l walltime=$timestring
906	#PBS -l ncpus=1
907	#PBS -l pmem=${memory}mb
908	#PBS -o $remote_dayfile
909	#PBS -j oe
910
911	%%END%%
912
913	fi
914
915	elif [[ $remote_host = lcyon ]]
916	then
917
918	if [[ $numprocs != 0 ]]
919	then
920	cat > $job_to_send << %%END%%
921	#!/bin/ksh
922	#PBS -N $job_name
923	#PBS -l walltime=$timestring
924	#PBS -l ncpus=$numprocs
925	#PBS -l pmem=${memory}mb
926	#PBS -o $remote_dayfile
927	#PBS -j oe
928
929	%%END%%
930
931	else
932	cat > $job_to_send << %%END%%
933	#!/bin/ksh
934	#PBS -N $job_name
935	#PBS -l walltime=$timestring
936	#PBS -l ncpus=1
937	#PBS -l pmem=${memory}mb
938	#PBS -o $remote_dayfile
939	#PBS -j oe
940
941	%%END%%
942
943	fi
944
945	elif [[ $remote_host = lcxe6 ]]
946	then
947
948	if [[ $numprocs != 0 ]]
949	then
950	cat > $job_to_send << %%END%%
951	#!/bin/ksh
952	#PBS -S /bin/ksh
953	#PBS -N $job_name
954	#PBS -A $project_account
955	#PBS -j oe
956	#PBS -l walltime=$timestring
957	#PBS -l mppwidth=${numprocs}
958	#PBS -l mppnppn=${processes_per_node}
959	#PBS -m abe
960	#PBS -o $remote_dayfile
961	$email_directive
962
963	$init_cmds
964	$module_calls
965
966	%%END%%
967
968	else
969	cat > $job_to_send << %%END%%
970	#!/bin/ksh
971	#PBS -S /bin/ksh
972	#PBS -N $job_name
973	#PBS -A $project_account
974	#PBS -j oe
975	#PBS -l walltime=$timestring
976	#PBS -l ncpus=1
977	#PBS -l pmem=${memory}mb
978	#PBS -m abe
979	$email_directive
980	#PBS -o $remote_dayfile
981
982	$init_cmds
983	$module_calls
984
985	%%END%%
986
987	fi
988
989	elif [[ $remote_host = lckyoto ]]
990	then
991
992	cat > $job_to_send << %%END%%
993	#!/bin/ksh
994	# @\$-o $remote_dayfile
995	# @\$-eo -oi
996	# @\$-lP 16
997	# @\$-lp 1
998	# @\$-lm 28gb -llm unlimited -ls unlimited
999	# @\$-q $queue
1000	# @\$-Pvn abs_pack
1001	##for intel? @\$-Pvn abs_unpack -Pvs unpack -Pvc unpack
1002	#. /thin/local/etc/setprofile/intel-11.0.sh
1003	#. /thin/local/etc/setprofile/mvapich2-1.4+intel-11.0.sh
1004	. ~/.myprofile
1005	#. /home2/t/t51254/palm/current_version/myprofile
1006	#. /thin/apps/pgi/mpi.sh
1007	#
1008	env
1009	#
1010	set -x
1011
1012	%%END%%
1013
1014	elif [[ $remote_host = lcxt5m ]]
1015	then
1016
1017	if [[ $numprocs != 0 ]]
1018	then
1019	cat > $job_to_send << %%END%%
1020	#!/bin/ksh
1021	#PBS -S /bin/ksh
1022	#PBS -N $job_name
1023	#PBS -j oe
1024	#PBS -l walltime=$timestring
1025	#PBS -l mppwidth=${numprocs}
1026	#PBS -l mppnppn=${processes_per_node}
1027	#PBS -m abe
1028	#PBS -o $remote_dayfile
1029
1030	$init_cmds
1031	$module_calls
1032
1033	%%END%%
1034
1035	else
1036	cat > $job_to_send << %%END%%
1037	#!/bin/ksh
1038	#PBS -S /bin/ksh
1039	#PBS -N $job_name
1040	#PBS -j oe
1041	#PBS -l walltime=$timestring
1042	#PBS -l ncpus=1
1043	#PBS -l pmem=${memory}mb
1044	#PBS -m abe
1045	#PBS -o $remote_dayfile
1046
1047	$init_cmds
1048	$module_calls
1049
1050	%%END%%
1051
1052	fi
1053
1054	elif [[ $remote_host = lckyuh ]]
1055	then
1056	cat > $job_to_send << %%END%%
1057	#!/bin/bash
1058	#PJM -L "rscgrp=$queue"
1059	#PJM -L "node=$nodes"
1060	#PJM --mpi "proc=$numprocs"
1061	#PJM -L "elapse=$timestring"
1062	#PJM -o $remote_dayfile
1063	#PJM -j
1064	#PJM -X
1065	#PJM --no-stging
1066
1067	export LANG=en_US.UTF-8
1068	%%END%%
1069
1070	elif [[ $remote_host = lckyut ]]
1071	then
1072	cat > $job_to_send << %%END%%
1073	#!/bin/bash
1074	#PJM -L "rscgrp=$queue"
1075	#PJM -L "vnode=$numprocs"
1076	#PJM -L "vnode-core=1"
1077	#PJM -L "elapse=$timestring"
1078	#PJM --mpi proc=$numprocs
1079	#PJM -o $remote_dayfile
1080	#PJM -j
1081	#PJM -X
1082	#PJM --no-stging
1083
1084	export LANG=en_US.UTF-8
1085	%%END%%
1086
1087	elif [[ $remote_host = nech ]]
1088	then
1089
1090	if (( nodes > 1 ))
1091	then
1092	cat > $job_to_send << %%END%%
1093	#!/bin/ksh
1094	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1095	#PBS -l ${qsubmem}=${Memory}gb
1096	#PBS -b $nodes
1097	#PBS -o $remote_dayfile
1098	#PBS -N palm
1099	#PBS -j o
1100	#PBS -T mpisx
1101
1102	%%END%%
1103
1104	elif [[ $numprocs != 0 ]]
1105	then
1106	cat > $job_to_send << %%END%%
1107	#!/bin/ksh
1108	#PBS -l cpunum_prc=$processes_per_node,cputim_job=$cputime
1109	#PBS -l ${qsubmem}=${Memory}gb
1110	#PBS -o $remote_dayfile
1111	#PBS -N palm
1112	#PBS -j o
1113
1114	%%END%%
1115
1116	else
1117	cat > $job_to_send << %%END%%
1118	#!/bin/ksh
1119	#PBS -l ${qsubmem}=${Memory}gb,${qsubtime}=$cputime
1120	#PBS -o $remote_dayfile
1121	#PBS -j o
1122
1123	%%END%%
1124
1125	fi
1126
1127	elif [[ $remote_host = lctit ]]
1128	then
1129	cat > $job_to_send << %%END%%
1130	#!/bin/ksh
1131	$init_cmds
1132	$module_calls
1133
1134	%%END%%
1135
1136	# SET OPTIONS FOR SUBMIT-COMMAND
1137	if [[ $tasks_per_node != $processes_per_node ]]
1138	then
1139	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -o $remote_dayfile -j oe -q $queue "
1140	else
1141	submcom="$submcom -W group_list=$group_number -N $job_name -l walltime=$timestring -l select=$nodes:ncpus=$processes_per_node:mpiprocs=$tasks_per_node:mem=${Memory}gb -l place=scatter -o $remote_dayfile -j oe -q $queue "
1142	fi
1143
1144	else
1145
1146	cat > $job_to_send << %%END%%
1147	# @\$-q ${queue}
1148	# @\$-l${qsubtime} $timestring
1149	# @\$-l${qsubmem} ${memory}mb
1150	# @\$-o $remote_dayfile
1151	# @\$-eo
1152
1153	%%END%%
1154
1155	fi
1156
1157
1158	# IN CASE OF JOBS EXECUTING ON REMOTE-HOSTS, THE TRANSFER OF THE DAYFILES
1159	# TO THE LOCAL HOSTS WILL BE INITIATED BY TRAP ON EXIT
1160	# NO TRANSFER POSSIBLE ON IBM IN SEOUL
1161	if [[ $delete_dayfile = false && $remote_host != $local_host ]]
1162	then
1163	echo "set +vx" >> $job_to_send
1164	echo "trap '" >> $job_to_send
1165	echo "set +vx" >> $job_to_send
1166	if [[ $(echo $remote_host \| cut -c1-3) = ibm \|\| $remote_host = lccrayb \|\| $remote_host = lccrayh \|\| $(echo $remote_host \| cut -c1-3) = nec \|\| $remote_host = lcflow \|\| $remote_host = lckiaps \|\| $remote_host = lckyu* ]]
1167	then
1168	if [[ $remote_host = ibmh ]]
1169	then
1170	return_queue=c1
1171	elif [[ $remote_host = ibmkisti ]]
1172	then
1173	return_queue=class.1-2
1174	elif [[ $remote_host = ibmku ]]
1175	then
1176	return_queue=sdbg2
1177	elif [[ $remote_host = ibms ]]
1178	then
1179	return_queue=p_normal
1180	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1181	then
1182	return_queue=dataq
1183	elif [[ $remote_host = lckiaps ]]
1184	then
1185	return_queue=express
1186	elif [[ $remote_host = lckyuh ]]
1187	then
1188	return_queue=cx-single
1189	elif [[ $remote_host = lckyut ]]
1190	then
1191	return_queue=cx-single
1192	else
1193	return_queue=unknown
1194	fi
1195
1196	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1197	then
1198
1199	if [[ $remote_host = ibmku ]]
1200	then
1201	echo "echo \"#!/usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1202	echo "echo \"# @ shell = /usr/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1203	else
1204	echo "echo \"#!/bin/ksh\" >> scpjob.$identifier" >> $job_to_send
1205	fi
1206	echo "echo \"# @ job_type = serial\" >> scpjob.$identifier" >> $job_to_send
1207	echo "echo \"# @ job_name = transfer\" >> scpjob.$identifier" >> $job_to_send
1208	echo "echo \"# @ resources = ConsumableCpus(1) ConsumableMemory(1 gb)\" >> scpjob.$identifier" >> $job_to_send
1209	echo "echo \"# @ wall_clock_limit = 00:10:00,00:10:00\" >> scpjob.$identifier " >> $job_to_send
1210	echo "echo \"# @ output = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1211	echo "echo \"# @ error = job_queue/last_job_transfer_protocol\" >> scpjob.$identifier" >> $job_to_send
1212	if [[ $host != "ibmh" ]]
1213	then
1214	echo "echo \"# @ class = $return_queue\" >> scpjob.$identifier" >> $job_to_send
1215	fi
1216	echo "echo \"# @ image_size = 10\" >> scpjob.$identifier" >> $job_to_send
1217	echo "echo \"# @ notification = never\" >> scpjob.$identifier" >> $job_to_send
1218
1219	echo "echo \"# @ queue\" >> scpjob.$identifier" >> $job_to_send
1220	echo "echo \" \" >> scpjob.$identifier" >> $job_to_send
1221
1222	echo "echo \"set -x\" >> scpjob.$identifier" >> $job_to_send
1223	echo "echo \"batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \\\"$job_catalog\\\" $local_dayfile\" >> scpjob.$identifier" >> $job_to_send
1224	if [[ $remote_host = ibmku ]]
1225	then
1226	echo "echo \"rm scpjob.$identifier\" >> scpjob.$identifier" >> $job_to_send
1227	fi
1228	echo "echo \"exit\" >> scpjob.$identifier" >> $job_to_send
1229
1230	elif [[ $remote_host = nech ]]
1231	then
1232	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1233	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1234	echo "#PBS -l ${qsubmem}=1GB,${qsubtime}=100" >> $job_to_send
1235	echo "#PBS -o last_job_transfer_protocol" >> $job_to_send
1236	echo "#PBS -j o" >> $job_to_send
1237	echo " " >> $job_to_send
1238	echo "set -x" >> $job_to_send
1239	echo "cd /pf/b/${remote_user}/job_queue" >> $job_to_send
1240	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1241	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1242	echo "%%END%%" >> $job_to_send
1243
1244	elif [[ $remote_host = lckyuh ]]
1245	then
1246	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1247	echo "#!/bin/bash" >> $job_to_send
1248	echo "#PJM -L \"node=1\"" >> $job_to_send
1249	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1250	echo "#PJM --no-stging" >> $job_to_send
1251	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1252	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1253	echo "#PJM -j" >> $job_to_send
1254	echo " " >> $job_to_send
1255	echo "export LANG=en_US.UTF-8" >> $job_to_send
1256	echo "set -x" >> $job_to_send
1257	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1258	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1259	echo "%%END%%" >> $job_to_send
1260
1261	elif [[ $remote_host = lckyut ]]
1262	then
1263	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1264	echo "#!/bin/bash" >> $job_to_send
1265	echo "#PJM -L \"vnode=1\"" >> $job_to_send
1266	echo "#PJM -L \"rscgrp=$return_queue\"" >> $job_to_send
1267	echo "#PJM --no-stging" >> $job_to_send
1268	echo "#PJM -L \"elapse=30:00\"" >> $job_to_send
1269	echo "#PJM -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1270	echo "#PJM -j" >> $job_to_send
1271	echo " " >> $job_to_send
1272	echo "export LANG=en_US.UTF-8" >> $job_to_send
1273	echo "set -x" >> $job_to_send
1274	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres $remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1275	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1276	echo "%%END%%" >> $job_to_send
1277
1278	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1279	then
1280	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1281	echo "#!/bin/bash" >> $job_to_send
1282	echo "#PBS -N job_protocol_transfer" >> $job_to_send
1283	echo "#PBS -l walltime=00:30:00" >> $job_to_send
1284	echo "#PBS -l nodes=1:ppn=1" >> $job_to_send
1285	echo "#PBS -o \$HOME/job_queue/last_job_transfer_protocol" >> $job_to_send
1286	echo "#PBS -j oe" >> $job_to_send
1287	echo " " >> $job_to_send
1288	echo "set -x" >> $job_to_send
1289	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1290	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1291	echo "%%END%%" >> $job_to_send
1292
1293	elif [[ $remote_host = lcflow ]]
1294	then
1295	echo "cat > scpjob.${identifier}.tmp << %%END%%" >> $job_to_send
1296	echo "#!/bin/bash" >> $job_to_send
1297	echo "SGEPREFIX -S /bin/bash" >> $job_to_send
1298	echo "SGEPREFIX -N transfer_$job_name" >> $job_to_send
1299	echo "SGEPREFIX -cwd" >> $job_to_send
1300	echo "SGEPREFIX -l h_rt=01:00:00" >> $job_to_send
1301	echo "SGEPREFIX -l h_vmem=500M" >> $job_to_send
1302	echo "SGEPREFIX -l excl_flow=false" >> $job_to_send
1303	echo "SGEPREFIX -j y" >> $job_to_send
1304	echo "SGEPREFIX -o ${local_host}_${job_name}_scpjob_$identifier" >> $job_to_send
1305	echo " " >> $job_to_send
1306	echo "set -x" >> $job_to_send
1307	echo "export PALM_BIN=$PALM_BIN" \| sed -e 's:'$HOME':$HOME:' >> $job_to_send
1308	echo "export PATH=\$PATH:\$PALM_BIN" >> $job_to_send
1309	echo "" >> $job_to_send
1310	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1311	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1312	echo "rm -f scpjob.${identifier}" >> $job_to_send
1313	echo "%%END%%" >> $job_to_send
1314	echo "sed -e 's/SGEPREFIX/#$/g' scpjob.${identifier}.tmp > scpjob.${identifier}" >> $job_to_send
1315	echo "rm -f scpjob.${identifier}.tmp" >> $job_to_send
1316
1317	else
1318
1319	echo "cat > scpjob.$identifier << %%END%%" >> $job_to_send
1320	echo "# @\\\$-q $return_queue" >> $job_to_send
1321	echo "# @\\\$-l${qsubtime} 10" >> $job_to_send
1322	echo "# @\\\$-l${qsubmem} 10mb" >> $job_to_send
1323	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 \|\| $remote_host = t3es ]]
1324	then
1325	echo "# @\$-l mpp_p=0" >> $job_to_send
1326	fi
1327	echo '# @\$-lF 10mb' >> $job_to_send
1328	echo '# @\$-o job_queue/last_job_transfer_protocol' >> $job_to_send
1329	echo '# @\\\$-eo' >> $job_to_send
1330	echo " " >> $job_to_send
1331	if [[ $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1332	then
1333	echo "set +vx" >> $job_to_send
1334	echo ". .profile" >> $job_to_send
1335	fi
1336	echo "set -x" >> $job_to_send
1337	echo "batch_scp $PORTOPT -d -w 10 -u $local_user $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null" >> $job_to_send
1338	echo "[[ \"\$for_subjob_to_do\" != \"\" ]] && eval \$for_subjob_to_do" >> $job_to_send
1339	echo "%%END%%" >> $job_to_send
1340	fi
1341
1342	if [[ $(echo $remote_host \| cut -c1-3) = ibm ]]
1343	then
1344	echo "llsubmit scpjob.$identifier" >> $job_to_send
1345	elif [[ $remote_host = lccrayb \|\| $remote_host = lccrayh ]]
1346	then
1347	echo "msub -q $return_queue scpjob.$identifier" >> $job_to_send
1348	elif [[ $remote_host = t3eb \|\| $remote_host = t3eh \|\| $remote_host = t3ej2 \|\| $remote_host = t3ej5 ]]
1349	then
1350	echo "qsub -J n scpjob.$identifier" >> $job_to_send
1351	elif [[ $remote_host = t3es ]]
1352	then
1353	echo "qsub -J n -s /bin/ksh scpjob.$identifier" >> $job_to_send
1354	elif [[ $remote_host = lckiaps ]]
1355	then
1356	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1357	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"$submcom ${job_catalog}/scpjob.$identifier\" " >> $job_to_send
1358	echo "rm ${job_catalog}/scpjob.$identifier" >> $job_to_send
1359	elif [[ $remote_host = lckyu* ]]
1360	then
1361	echo "scp $PORTOPT scpjob.$identifier ${remote_username}@${remote_addres}:job_queue" >> $job_to_send
1362	echo "ssh $SSH_PORTOPT ${remote_username}@${remote_addres} \"cd job_queue; $submcom scpjob.$identifier; rm scpjob.$identifier\" " >> $job_to_send
1363	elif [[ $remote_host = lcflow ]]
1364	then
1365	echo "mv scpjob.$identifier $job_catalog" >> $job_to_send
1366	echo "/usr/bin/ssh ${remote_username}@${remote_addres} \"$init_cmds $module_calls cd $job_catalog; $submcom scpjob.$identifier\" " >> $job_to_send
1367	else
1368	echo "$submcom scpjob.$identifier" >> $job_to_send
1369	fi
1370	if [[ $remote_host != ibmku && $remote_host != lckiaps ]]
1371	then
1372	echo "rm scpjob.$identifier" >> $job_to_send
1373	fi
1374	if [[ $remote_host = nech ]]
1375	then
1376	echo "cd -" >> $job_to_send
1377	fi
1378	else
1379	# echo "ftpcopy -d $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile" >> $job_to_send
1380	# ??? funktioniert das ÃŒberhaupt noch ???
1381	echo "nohup ftpcopy -d -w 15 $local_addres ${job_catalog}/$remote_dayfile \"$job_catalog\" $local_dayfile > /dev/null &" >> $job_to_send
1382	fi
1383	echo "set -x" >> $job_to_send
1384	echo " ' exit" >> $job_to_send
1385	echo "set -x" >> $job_to_send
1386	fi
1387
1388
1389
1390	# APPEND THE JOB-FILE (CREATE BY mrun) TO THE JOB-DIRECTIVES GENERATED ABOVE
1391	cat $file_to_send >> $job_to_send
1392
1393	if [[ $remote_host = ibm ]]
1394	then
1395	echo " " >> $job_to_send
1396	echo "exit" >> $job_to_send
1397	fi
1398
1399	# REMOVE JOB-FILE
1400	if [[ $remote_host = lctit \|\| $remote_host = ibmku \|\| $remote_host = lcflow ]]
1401	then
1402	echo " " >> $job_to_send
1403	echo "rm ~/job_queue/$job_on_remhost" >> $job_to_send
1404	fi
1405
1406
1407	# TRANSFER JOB TO THE TARGET HOST (JOB-DIRECTORY)
1408	if [[ $no_submit = false ]]
1409	then
1410	if [[ $remote_host != $local_host ]]
1411	then
1412	[[ $verify = true ]] && printf "\n >>> transfering job to \"$remote_host\"..."
1413	if [[ $remote_host = ibms ]] # ssh on ibms cannot handle "~/"
1414	then
1415	job_catalog_save=$job_catalog
1416	job_catalog=job_queue
1417	elif [[ $remote_host = nech ]]
1418	then
1419	job_catalog_save=$job_catalog
1420	job_catalog=/hpf/b/${remote_user}/job_queue
1421	fi
1422	if [[ $remote_host = nech ]]
1423	then
1424	# FILES CAN ONLY BE TRANSFERED VIA DKRZ'S ARCHIVE-SERVER
1425	scp $PORTOPT $job_to_send ${remote_user}@136.172.44.205:${job_catalog}/$job_on_remhost
1426	else
1427	scp $PORTOPT $job_to_send ${remote_user}@${remote_addres}:${job_catalog}/$job_on_remhost
1428	fi
1429	if [[ $? = 1 ]]
1430	then
1431	locat=scp; exit
1432	fi
1433	if [[ $remote_host = ibms ]]
1434	then
1435	job_catalog=$job_catalog_save
1436	fi
1437	[[ $verify = true ]] && printf "\n >>> finished\n"
1438	else
1439	eval job_catalog=$job_catalog
1440	cp $job_to_send ${job_catalog}/$job_on_remhost
1441	fi
1442
1443
1444
1445	# START NQS- / LOADLEVELER-JOB
1446	if [[ $remote_host != $local_host ]]
1447	then
1448	[[ $verify = true ]] && printf "\n >>> submitting job using \"qsub\"...\n"
1449
1450	if [[ $remote_host = ibmku ]]
1451	then
1452	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost"
1453	elif [[ $remote_host = lcflow ]]
1454	then
1455	/usr/bin/ssh $SSH_PORTOPT $remote_addres -l $remote_user "$init_cmds $module_calls cd $job_catalog; $submcom $job_on_remhost"
1456	else
1457	ssh $SSH_PORTOPT $remote_addres -l $remote_user "cd $job_catalog; $submcom $job_on_remhost; rm $job_on_remhost"
1458	fi
1459
1460	[[ $verify = true ]] && printf " >>> o.k.\n"
1461	else
1462	cd $job_catalog
1463	if [[ $(echo $local_host \| cut -c1-3) = ibm \|\| $(echo $local_host \| cut -c1-6) = lccray ]]
1464	then
1465	eval $submcom $job_on_remhost
1466	elif [[ $local_host = lctit \|\| $localhost = lcxe6 \|\| $localhost = lck \|\| $localhost = lckordi \|\| $localhost = lcyon \|\| $localhost = lcsb \|\| $localhost = lckyu* ]]
1467	then
1468	chmod u+x $job_on_remhost
1469	eval $submcom $job_on_remhost
1470	elif [[ $local_host = nech ]]
1471	then
1472	if [[ $queue = default ]]
1473	then
1474	eval $submcom $job_on_remhost
1475	else
1476	eval $submcom -q $queue $job_on_remhost
1477	fi
1478	else
1479	qsub $job_on_remhost
1480	fi
1481
1482	# JOBFILE MUST NOT BE DELETED ON lctit/ibmku/lcflow. THIS WILL BE DONE
1483	# AT THE END OF THE JOB
1484	if [[ $local_host != lctit && $local_host != ibmku && $local_host != lcflow ]]
1485	then
1486	rm $job_on_remhost
1487	fi
1488	cd - > /dev/null
1489	fi
1490	fi
1491
1492
1493
1494	# FINAL ACTIONS
1495	if [[ $no_submit = false ]]
1496	then
1497	rm -f $job_to_send
1498	fi
1499	[[ $verify = true ]] && printf "\n\n *** SUBJOB finished \n\n"

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