#! /bin/bash
# batch_scp - script for automatic file/directory transfer using scp
#--------------------------------------------------------------------------------#
# This file is part of the PALM model system.
#
# PALM is free software: you can redistribute it and/or modify it under the terms
# of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
#
# PALM is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with
# PALM. If not, see .
#
# Copyright 1997-2021 Leibniz Universitaet Hannover
#--------------------------------------------------------------------------------#
#
# Current revisions:
# ------------------
#
#
# Former revisions:
# -----------------
# $Id: batch_scp 4843 2021-01-15 15:22:11Z suehring $
# add cycle number to initial files too (000),
# remove compatibility for cycle numbers which are less than three digits wide
#
# 3549 2018-11-21 15:44:44Z raasch
# english translation of german comments / variable names
#
# 2718 2018-01-02 08:49:38Z maronga
# Corrected "Former revisions" section
#
# 2715 2017-12-27 11:31:43Z raasch
# last commit documented
#
# 2714 2017-12-27 11:25:57Z raasch
# bugfix: variable cycle explicitly interpreted with 10 as the number base
#
# 2696 2017-12-14 17:12:51Z kanani
# Change in file header (GPL part)
#
# 2600 2017-11-01 14:11:20Z raasch
# cycle numbers made three digits wide
# host depending code completely removed
#
# 2261 2017-06-08 14:25:57Z raasch
# option usecycle added, script is running under bash now,
# filenames are allowed to contain arbitrary number of dots "."
#
# 1310 2014-03-14 08:01:56Z raasch
#
# 1202 2013-07-10 16:22:07Z witha
# adjustments for Forwind cluster (lcflow): using absolute paths for ssh
#
# 1099 2013-02-10 01:47:43Z raasch
# LANG variable is unset in some ssh calls to guarantee messages in English
#
# 1094 2013-02-03 01:52:12Z raasch
# new option -P for explicit setting of ssh/scp port
#
# 1090 2013-02-02 07:06:13Z raasch
# code put under GPL (PALM 3.9)
# adjustments for Kyushu-University computing center (lckyut)
# old changelog messages removed
#
# 08/03/11 - Siggi - adjustments for ibmkisti: this machine allows
# outgoing ssh/scp connections only from the
# interactive nodes (gaiad). All ssh/scp traffic is
# done via this interactive node.
# 04/01/02 - Siggi - first version finished
# 29/11/01 - Siggi - script development started
#
#--------------------------------------------------------------------------------#
# batch_scp - script for automatic file/directory transfers using scp
#
# batch_scp has up to 5 arguments (first 4 are mandatory):
# $1 = IP-addres of remote (target) machine
# $2 = file to be transferred
# $3 = directory of remote machine, where file should be copied to
# $4 = filename that file should be given on remote machine
# $5 = file extension (optional argument)
#
# ATTENTION: problems might occur if directories on remote machine include very
# old files for which "ls -al" does give "year" as modification
# time instead of "hh:mm". In such a case, batch_scp cannot check the
# filename and may not find the file (e.g. if option -g is used).
#--------------------------------------------------------------------------------#
# VARIABLE DECLARATIONS + DEFAULT VALUES
random=$RANDOM
absolut=false
append=false
catalog_copy=false
check=false
cyclestring=""
delete=false
errfile=batch_scp.errfile.$random
filelist=filelist.$random
get=false
local_host=`hostname`
local_wdir=`pwd`
locat=normal
make_catalog=false
overwrite=false
print_local_filename=false
quote_wait=false
remote_user=""
silent=false
transfermode=binary
typeset -i iii icycle maxcycle=0 usecycle wait=0
# ERROR HANDLING IN CASE ...
# ... EXIT
trap 'if [[ $locat != normal ]]
then
[[ -f "$filelist" ]] && cat $filelist
[[ -f "$errfile" ]] && cat $errfile
rm -rf $filelist $errfile
printf " +++ BATCH_SCP terminated \n"
printf " locat = $locat \n"
printf " arguments = $1 $2 $3 $4 \n\n"
exit 1
fi' exit
# ... TERMINAL-BREAK:
trap 'rm -rf $filelist $errfile
printf " +++ BATCH_SCP terminated \n\n"
exit 1
' 2
# READ SHELLSCRIPT-OPTIONS
while getopts :aAbcCdgmnoP:qsu:U:w: option
do
case $option in
(a) absolut=true;;
(A) append=true;;
(b) transfermode=binary;;
(c) catalog_copy=true;;
(C) check=true;;
(d) delete=true;;
(g) get=true;;
(m) make_catalog=true;;
(n) print_local_filename=true;; # Option ist nicht dokumentiert !
(o) overwrite=true;;
(P) scp_port=$OPTARG;;
(q) quote_wait=true;;
(s) silent=true;;
(u) remote_user=$OPTARG;;
(U) usecycle=$OPTARG;;
(w) wait=$OPTARG;;
(\?) printf " +++ option $OPTARG unknown \n"
printf " --> call: batch_scp [-aAbcCdgmnoqsuw] \n"
locat=parameter;exit;;
esac
done
(( to_shift = $OPTIND - 1 ))
shift $to_shift
# LIST SHORT DESCRIPTION OF AVAILABLE OPTIONS
if [ "$1" = "?" ]
then
(printf "\n *** batch_scp can be called as follows:\n"
printf "\n batch_scp -a -b -d -g -o -q -s -u.. -U.. -w.. \n"
printf "\n Description of available options:\n"
printf "\n Option Description Default-Value"
printf "\n -a Filenames are absolute. No cycle- ---"
printf "\n numbers will be determined"
printf "\n -A append to destination file ---"
printf "\n -b use binary-modus for transfer ASCII-modus"
printf "\n -c transfer of directory ---"
printf "\n -C check-Modus, no transfer ---"
printf "\n -d file to be transferred will be ---"
printf "\n deleted after successful transfer"
printf "\n -g change of transfer direction, i.e. ---"
printf "\n file will be transferred from"
printf "\n destination host"
printf "\n -o any existing file will be overwritten ---"
printf "\n -q switch on \"quote wait\" on ---"
printf "\n estination host"
printf "\n -s do not display informative messages ---"
printf "\n -u username on remote machine "
printf "\n -U cycle number to be used ---"
printf "\n -w waiting time in seconds, before trans- 0"
printf "\n fer will be initiated"
printf "\n "
printf "\n The positional parameters - must be provided at"
printf "\n any time and have the following meaning:"
printf "\n - IP-adress of destination host"
printf "\n or \"?\" (creates this short summary of options)"
printf "\n - abs. or rel. path of file to be transferred"
printf "\n - directory (abs.!) on destination host. Special cahracters"
printf "\n like \~ are allowed but must be quoted by \"."
printf "\n - filename (without path!) on destination host; must not"
printf "\n be given, if option -c is used."
printf "\n When using option -g, file will be copied from destination host to file"
printf "\n . In this case, no overwriting is possible.") | more
exit
fi
# CHECK FOR COMPLETENESS OF ARGUMENTS
if [[ "$1" = "" ]]
then
printf " +++ 1. argument missing \n"
locat=argument; exit
elif [[ "$2" = "" ]]
then
printf " +++ 2. argument missing \n"
locat=argument; exit
elif [[ "$3" = "" ]]
then
printf " +++ 3. argument missing \n"
locat=argument; exit
elif [[ "$4" = "" ]]
then
printf " +++ 4. argument missing \n"
locat=argument; exit
fi
# USER-NAME AUF ZIELRECHNER AUS .NETRC-DATEI ERMITTELN
if [[ -z $remote_user ]]
then
printf " +++ option -u is missing \n"
locat=remote_user; exit
fi
# APPEND IS ONLY ALLOWED FOR TRANSFER OF SINGLE FILES WITHOUT OVERWRITING
# IN SUCH A CASE GET IS NOT ALLOWED TOO
if [[ $append = true && ( $get = true || $catalog_copy = true || $overwrite = true ) ]]
then
printf " +++ options -g, -c and -o are not allowed, if -A is given \n"
locat=parameter; exit
fi
# QUOTE WAIT DOES NOT WORK IF COMPLETE FOLDERS ARE COPIED
if [[ $quote_wait = true && $catalog_copy = true ]]
then
printf " +++ options -c and -q must not be used simultaneously\n"
locat=parameter; exit
fi
# SCRIPT WILL BE ENDED HERE IN CASE OF CHECK-MODE
[[ $check = true ]] && exit
# WAIT A BIT (MAY BE REQUIRED IN CASE OF TRANSFERS OF JOB PROTOCOLS FROM
# WITHIN A JOB)
sleep $wait
# SET PORT NUMBER OPTION FOR CALLS OF SSH/SCP
if [[ "$scp_port" != "" ]]
then
PORTOPT="-P $scp_port"
SSH_PORTOPT="-p $scp_port"
fi
# CHECK, IF LOCAL FILE/FOLDER EXISTS
if [[ $get = false ]]
then
if [[ $catalog_copy = false ]]
then
if [[ ! -f $2 ]]
then
printf " +++ file \"$2\" to be transferred does not exist \n"
locat=localfile; exit
fi
else
if [[ ! -d $2 ]]
then
printf " +++ directory \"$2\" to be transferred does not exist\n"
printf " or is not a directory \n"
locat=localfile; exit
fi
fi
else
if [[ $catalog_copy = false ]]
then
if [[ -f $2 ]]
then
if [[ $overwrite = true ]]
then
rm $2
else
printf " +++ local file \"$2\" is already existing \n"
locat=localfile; exit
fi
else
# CHECK, IF LOCAL FILE CAN BE CREATED
local_dirname=`dirname $2`
if [[ ! -d $local_dirname ]]
then
printf " +++ local directory \"$local_dirname\" \n"
printf " does not exist or is not a directory \n"
printf " +++ cannot copy file \"$3/$4\" \n"
printf " from \"$1\" to \"$local_host\" \n"
locat=localfile; exit
fi
fi
else
if [[ -d $2 || -f $2 ]]
then
printf " +++ local directory \"$2\" is already existing, \n"
printf " or a file with the same name exists \n"
locat=localfile; exit
fi
fi
fi
# CREATE FILE LIST OF THE TARGET HOST FOLDER
ssh $SSH_PORTOPT $1 -l $remote_user "unset LANG; cd $3; ls -1; echo '*** list complete'" > $filelist 2>&1
ssh_status=$?
if [[ $ssh_status != 0 ]]
then
if [[ ! -f $filelist ]]
then
echo " local_host = $local_host ssh_status = $ssh_status"
locat=ssh_failed_1; exit
else
if [[ $(grep -c "*** list complete" $filelist) = 0 ]]
then
echo " local_host = $local_host ssh_status = $ssh_status"
locat=ssh_failed_2; exit
fi
fi
fi
# CHECK, IF FOLDER EXISTS. A FOLDER MUST NOT EXIST, IF COMPLETE FOLDERS
# SHALL BE COPIED TO THE TARGET HOST
if [[ $(cat $filelist | grep -c "not found") != 0 || \
$(cat $filelist | grep -c "No such file or directory") != 0 ]]
then
if [[ ! ( $catalog_copy = true && $get = false ) ]]
then
if [[ $make_catalog = false ]]
then
printf " +++ directory \"$3\" does not exist on destination host (\"$1\") \n"
locat=directory; exit
else
if [[ $silent = false ]]
then
printf " >>> directory \"$3\" does not exist on destination host (\"$1\")"
printf "\n trying to create \"$3\" \n"
fi
make_catalog=force
fi
fi
fi
# CHECK, IF FILE/FOLDER EXISTS. IF SO, DETERMINE HIGHEST CYCLE NUMBER
# (OR CHECK, IN ABSOLUT-MODE, IF FILE EXSITS)
# BUT DO THIS IN NON-OVERWRITE-MODE ONLY
found=false
if [[ ( $overwrite = false && $get = false ) || $get = true ]]
then
while read line
do
if [[ $absolut = false ]]
then
# REMOVE EXTENSION, IF EXISTING AND GIVEN AS ARGUMENT
if [[ "$5" != "" && "$5" != " " ]]
then
extension=${line##*.}
if [[ $extension = $5 ]]
then
text=${line%.*}
else
text=${line}
fi
else
text=${line}
fi
# GET AND REMOVE CYCLE NUMBER, IF EXISTING, AND CHECK, IF FILE EXISTS
cycle=${text##*.}
if [[ $cycle = $text ]]
then
# filename contains no dot, i.e. no cycle number
if [[ "$text" = "$4" ]]
then
found=true
(( icycle = 0 ))
fi
else
# filename contains at least one dot
# find out if the string after the last dot is a number
if [[ $cycle =~ ^-?[0-9]+$ ]]
then
text=${text%.*}
if [[ "$text" = "$4" ]]
then
found=true
(( icycle = $((10#$cycle)) ))
fi
else
if [[ "$text" = "$4" ]]
then
found=true
(( icycle = 0 ))
fi
fi
fi
if (( icycle > maxcycle ))
then
(( maxcycle = icycle ))
fi
else
# ABSOLUT-MODE ONLY REQUIRES TO CHECK IF FILE EXISTS
[[ $4 = $line ]] && found=true
fi
done <$filelist
fi
if [[ $found = true ]]
then
if [[ $get = false ]]
then
if [[ $absolut = false ]]
then
if [[ $append = false ]]
then
(( maxcycle = maxcycle + 1 ))
# TRY TO USE FIXED CYCLE NUMBER, IF GIVEN AS OPTION
if [[ "$usecycle" != "" ]]
then
if (( usecycle >= maxcycle ))
then
(( maxcycle = usecycle ))
else
printf " >>> Unified cycle number cannot be used\n"
fi
fi
fi
cyclestring=`printf ".%03d" $maxcycle`
else
if [[ $overwrite = false ]]
then
printf " +++ file \"$3/$4\" \n"
printf " already exists on destination host (use -o, if necessary) \n"
locat=file; exit
fi
fi
else
if [[ $absolut = false ]]
then
# MAKE CYCLE NUMBER THREE DIGITS WIDE
cyclestring=`printf ".%03d" $maxcycle`
else
cyclestring=""
fi
fi
else
if [[ "$usecycle" != "" ]]
then
(( maxcycle = usecycle ))
fi
cyclestring=`printf ".%03d" $maxcycle`
# EXIT, IF FILE SHALL BE GET FROM THE TARGET HOST, BUT DOESN'T EXIST
if [[ $get = true ]]
then
printf " +++ file \"$3/$4\" \n"
printf " does not exist on destination host (\"$1\") \n"
locat=remotefile; exit
fi
fi
# IF NAME-OPTION (-n) IS CHOSEN, ONLY DETERMINE THE LOCAL FILENAME ON THE
# TARGET HOST AND EXIT THE SCRIPT
if [[ $print_local_filename = true ]]
then
printf "$4$cyclestring\n"
rm -r $filelist
exit
fi
# IF A 5. ARGUMENT IS GIVEN, IT WILL BE PUT AS FILENAME EXTENSION/APPENDIX
# AFTER THE CYCLE NUMBER (ONLY WORKS IN CASE OF FILE COPY TO THE TARGET HOST)
if [[ "$5" != "" && $get = false ]]
then
cyclestring=${cyclestring}.$5
fi
# IN CASE OF FOLDER TRANSER TO THE TARGET HOST, CHECK IF ARGUMENT $3 REALLY
# REFERS TO A FOLDER ON THE TARGET HOST
if [[ $catalog_copy = true && $get = true ]]
then
rm -rf $filelist
ssh $SSH_PORTOPT $1 -l $remote_user "cd $3" > $filelist
if [[ $? != 0 ]]
then
locat=ssh_failed_3; exit
fi
if [[ $(cat $filelist | grep -c "Not a directory") != 0 ]]
then
printf " +++ \"$3\" on destination host is not a directory \n"
locat=directory; exit
fi
fi
# IN CASE OF FOLDER TRANSFER FROM THE TARGET HOST TO THE LOCAL HOST,
# CREATE THE RESPECTIVE FOLDER ON THE LOCAL HOST
if [[ $catalog_copy = true ]]
then
if [[ $get = true ]]
then
mkdir $2
fi
fi
catalog_name=$3
[[ "$catalog_name" != "" ]] && catalog_name=${catalog_name}/
# COPY FILE/FOLDER VIA SCP
if [[ $get = false ]]
then
if [[ $make_catalog != force ]]
then
if [[ $append = false ]]
then
if [[ $catalog_copy = false ]]
then
scp $PORTOPT -p $2 $remote_user@$1:$catalog_name$4$cyclestring > /dev/null
else
scp $PORTOPT -p -r $2 $remote_user@$1:$catalog_name$4$cyclestring > /dev/null
fi
scp_status=$?
if [[ $scp_status != 0 ]]
then
# CHECK, IF FILE SIZES ON LOCAL HOST AND TARGET HOST MATCH
local_size=`ls -al $2`
local_size=`echo $local_size | cut -d" " -f5`
remote_size=`ssh $SSH_PORTOPT $1 -l $remote_user "ls -al $catalog_name$4$cyclestring"`
remote_size=`echo $remote_size | cut -d" " -f5`
if [[ "$remote_size" != "$local_size" ]]
then
echo " +++ scp failed on host \"$local_host\" with exit $scp_status"
echo " local size = \"$local_size\" remote size = \"$remote_size\" "
date
locat=scp_failed; exit
fi
fi
else
scp $PORTOPT -p $2 $remote_user@$1:${catalog_name}batch_scp_append_file.$random > /dev/null
if [[ $? != 0 ]]
then
# CHECK, IF FILE SIZES ON LOCAL HOST AND TARGET HOST MATCH
local_size=`ls -al $2`
local_size=`echo $local_size | cut -d" " -f5`
remote_size=`ssh $SSH_PORTOPT $1 -l $remote_user "ls -al ${catalog_name}batch_scp_append_file.$random"`
remote_size=`echo $remote_size | cut -d" " -f5`
if [[ "$remote_size" != "$local_size" ]]
then
echo " +++ scp failed on host \"$local_host\" with exit $scp_status"
echo " local size = \"$local_size\" remote size = \"$remote_size\" "
date
locat=scp_for_append_failed; exit
fi
fi
rm $filelist
ssh $SSH_PORTOPT $1 -l $remote_user "cd $3; cat batch_scp_append_file.$random >> $4$cyclestring; rm batch_scp_append_file.$random; echo '*** append complete'" > $filelist
if [[ $? != 0 ]]
then
if [[ ! -f $filelist ]]
then
locat=append_via_ssh_failed; exit
else
if [[ $(grep -c "*** append complete" $filelist) = 0 ]]
then
locat=append_via_ssh_failed; exit
fi
fi
fi
fi
else
ssh $SSH_PORTOPT $1 -l $remote_user "mkdir -p $3"
if [[ $? != 0 ]]
then
locat=ssh_failed_4; exit
fi
scp $PORTOPT -p $2 $remote_user@$1:$catalog_name$4$cyclestring > /dev/null
if [[ $? != 0 ]]
then
locat=scp_failed; exit
fi
fi
else
if [[ $catalog_copy = false ]]
then
if [[ $quote_wait = true ]]
then
printf " +++ quote wait not realized with BATCH_SCP"
locat=unavailable_feature; exit
else
scp $PORTOPT -p $remote_user@$1:$catalog_name$4$cyclestring $2 > /dev/null
if [[ $? != 0 ]]
then
locat=scp_failed; exit
fi
fi
else
printf " +++ get of whole cataloges not realized with BATCH_SCP so far"
locat=unavailable_feature; exit
fi
fi
# DELETE TRANSFERED FILE ON THE LOCAL HOST
if [[ $delete = true && $get = false ]]
then
rm -rf $2
fi
# FINAL MESSAGES
if [[ $silent = false ]]
then
if (( maxcycle == 0 ))
then
if [[ $append = false ]]
then
printf " >>> transfer successful \n"
else
printf " >>> file was appended \n"
fi
else
printf " >>> transfer successful \n"
if [[ $append = false ]]
then
if [[ $catalog_copy = false ]]
then
printf " new file has cycle number .%03d \n" $maxcycle
else
printf " new catalog has cycle number .%03d \n" $maxcycle
fi
else
printf " append to cycle number .%03d \n" $maxcycle
fi
fi
fi
rm -rf $filelist $errfile